2025-09-08T17:57:48,927 Created temporary directory: /tmp/pip-build-tracker-sni_8s8n 2025-09-08T17:57:48,928 Initialized build tracking at /tmp/pip-build-tracker-sni_8s8n 2025-09-08T17:57:48,928 Created build tracker: /tmp/pip-build-tracker-sni_8s8n 2025-09-08T17:57:48,928 Entered build tracker: /tmp/pip-build-tracker-sni_8s8n 2025-09-08T17:57:48,929 Created temporary directory: /tmp/pip-wheel-fmjccr7e 2025-09-08T17:57:48,932 Created temporary directory: /tmp/pip-ephem-wheel-cache-svbcw30p 2025-09-08T17:57:48,995 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T17:57:48,998 2 location(s) to search for versions of deeptoolsintervals: 2025-09-08T17:57:48,998 * https://pypi.org/simple/deeptoolsintervals/ 2025-09-08T17:57:48,998 * https://www.piwheels.org/simple/deeptoolsintervals/ 2025-09-08T17:57:48,998 Fetching project page and analyzing links: https://pypi.org/simple/deeptoolsintervals/ 2025-09-08T17:57:48,998 Getting page https://pypi.org/simple/deeptoolsintervals/ 2025-09-08T17:57:48,999 Found index url https://pypi.org/simple/ 2025-09-08T17:57:49,070 Fetched page https://pypi.org/simple/deeptoolsintervals/ as application/vnd.pypi.simple.v1+json 2025-09-08T17:57:49,071 Found link https://files.pythonhosted.org/packages/da/1a/af0e167859b4302a666729c25cbcab02cc147c29a11e0b8768ce324960ff/deeptoolsintervals-0.1.7.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.7 2025-09-08T17:57:49,071 Found link https://files.pythonhosted.org/packages/5e/a6/fa0ec5fb29f0ab041ce69e6e837e04a831022bb5b1e2e8b524491d53b8a3/deeptoolsintervals-0.1.8.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.8 2025-09-08T17:57:49,072 Found link https://files.pythonhosted.org/packages/ac/1f/d10d6ad23c86c62d90d867d0506881a392ec6ef06885b858eaab868dd356/deeptoolsintervals-0.1.9.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.9 2025-09-08T17:57:49,072 Fetching project page and analyzing links: https://www.piwheels.org/simple/deeptoolsintervals/ 2025-09-08T17:57:49,072 Getting page https://www.piwheels.org/simple/deeptoolsintervals/ 2025-09-08T17:57:49,073 Found index url https://www.piwheels.org/simple/ 2025-09-08T17:57:49,171 Fetched page https://www.piwheels.org/simple/deeptoolsintervals/ as text/html 2025-09-08T17:57:49,178 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp39-cp39-linux_armv6l.whl#sha256=2f13db26292dccd89ee311342a772297b96151bda8a0a5ead0808ce09a9c8923 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp39-cp39-linux_armv7l.whl#sha256=2f13db26292dccd89ee311342a772297b96151bda8a0a5ead0808ce09a9c8923 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp34-cp34m-linux_armv6l.whl#sha256=91eab1918368ae25211e7d2841d4473fac0b05d620c3ad20f790df228b29c454 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp34-cp34m-linux_armv7l.whl#sha256=91eab1918368ae25211e7d2841d4473fac0b05d620c3ad20f790df228b29c454 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp37-cp37m-linux_armv7l.whl#sha256=11923297523d08eb35fdb7f7759be6811ff716b3b3ea5d33740187c4cf0165b1 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp37-cp37m-linux_armv6l.whl#sha256=11923297523d08eb35fdb7f7759be6811ff716b3b3ea5d33740187c4cf0165b1 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,179 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp35-cp35m-linux_armv6l.whl#sha256=2d453ce2d0fb2bf50c891a544525eb35d0f7700d7fd6d9d8c25302f5c5c9e53b (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,180 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp35-cp35m-linux_armv7l.whl#sha256=2d453ce2d0fb2bf50c891a544525eb35d0f7700d7fd6d9d8c25302f5c5c9e53b (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,180 Skipping link: No 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https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp34-cp34m-linux_armv7l.whl#sha256=a98b482405bd8bd98b21ad30fe6cc5dc228cc630483cffd0fca10115b22e0dda (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,182 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp34-cp34m-linux_armv6l.whl#sha256=a98b482405bd8bd98b21ad30fe6cc5dc228cc630483cffd0fca10115b22e0dda (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,183 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp311-cp311-linux_armv6l.whl#sha256=dfa3923a42bb5707a468d8b6f97f92bd937a3d3e7ba8710cb2d611d6b5547a77 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,183 Skipping link: No binaries permitted for deeptoolsintervals: https://archive1.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp311-cp311-linux_armv7l.whl#sha256=dfa3923a42bb5707a468d8b6f97f92bd937a3d3e7ba8710cb2d611d6b5547a77 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,183 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp313-cp313-linux_armv6l.whl#sha256=0a4400b612160e75acd24acd1d84f03c0243ee6acf01a4a8ea1b5e987593bfca (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,183 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp313-cp313-linux_armv7l.whl#sha256=0a4400b612160e75acd24acd1d84f03c0243ee6acf01a4a8ea1b5e987593bfca (from https://www.piwheels.org/simple/deeptoolsintervals/) 2025-09-08T17:57:49,183 Skipping link: not a file: https://www.piwheels.org/simple/deeptoolsintervals/ 2025-09-08T17:57:49,183 Skipping link: not a file: https://pypi.org/simple/deeptoolsintervals/ 2025-09-08T17:57:49,208 Given no hashes to check 1 links for project 'deeptoolsintervals': discarding no candidates 2025-09-08T17:57:49,209 Collecting deeptoolsintervals==0.1.8 2025-09-08T17:57:49,210 Created temporary directory: /tmp/pip-unpack-njya2ms7 2025-09-08T17:57:49,347 Downloading deeptoolsintervals-0.1.8.tar.gz (40 kB) 2025-09-08T17:57:49,387 Added deeptoolsintervals==0.1.8 from https://files.pythonhosted.org/packages/5e/a6/fa0ec5fb29f0ab041ce69e6e837e04a831022bb5b1e2e8b524491d53b8a3/deeptoolsintervals-0.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-sni_8s8n' 2025-09-08T17:57:49,388 Running setup.py (path:/tmp/pip-wheel-fmjccr7e/deeptoolsintervals_1c4f2c3eae494fdc9cbb95c36218891c/setup.py) egg_info for package deeptoolsintervals 2025-09-08T17:57:49,388 Created temporary directory: /tmp/pip-pip-egg-info-b036pkw4 2025-09-08T17:57:49,388 Preparing metadata (setup.py): started 2025-09-08T17:57:49,389 Running command python setup.py egg_info 2025-09-08T17:57:50,080 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' 2025-09-08T17:57:50,080 warnings.warn(msg) 2025-09-08T17:57:50,542 running egg_info 2025-09-08T17:57:50,617 creating /tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info 2025-09-08T17:57:50,617 writing /tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/PKG-INFO 2025-09-08T17:57:50,618 writing dependency_links to /tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/dependency_links.txt 2025-09-08T17:57:50,619 writing top-level names to /tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/top_level.txt 2025-09-08T17:57:50,620 writing manifest file '/tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/SOURCES.txt' 2025-09-08T17:57:50,914 reading manifest file '/tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/SOURCES.txt' 2025-09-08T17:57:50,915 reading manifest template 'MANIFEST.in' 2025-09-08T17:57:50,916 warning: no files found matching 'deeptoolsintervals/tree.*' 2025-09-08T17:57:50,920 writing manifest file '/tmp/pip-pip-egg-info-b036pkw4/deeptoolsintervals.egg-info/SOURCES.txt' 2025-09-08T17:57:51,033 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T17:57:51,038 Source in /tmp/pip-wheel-fmjccr7e/deeptoolsintervals_1c4f2c3eae494fdc9cbb95c36218891c has version 0.1.8, which satisfies requirement deeptoolsintervals==0.1.8 from https://files.pythonhosted.org/packages/5e/a6/fa0ec5fb29f0ab041ce69e6e837e04a831022bb5b1e2e8b524491d53b8a3/deeptoolsintervals-0.1.8.tar.gz 2025-09-08T17:57:51,038 Removed deeptoolsintervals==0.1.8 from https://files.pythonhosted.org/packages/5e/a6/fa0ec5fb29f0ab041ce69e6e837e04a831022bb5b1e2e8b524491d53b8a3/deeptoolsintervals-0.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-sni_8s8n' 2025-09-08T17:57:51,041 Created temporary directory: /tmp/pip-unpack-u2934pgc 2025-09-08T17:57:51,041 Created temporary directory: /tmp/pip-unpack-ni9o4f2l 2025-09-08T17:57:51,041 Building wheels for collected packages: deeptoolsintervals 2025-09-08T17:57:51,042 Created temporary directory: /tmp/pip-wheel-5c_l43yr 2025-09-08T17:57:51,043 DEPRECATION: Building 'deeptoolsintervals' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'deeptoolsintervals'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T17:57:51,044 Building wheel for deeptoolsintervals (setup.py): started 2025-09-08T17:57:51,045 Destination directory: /tmp/pip-wheel-5c_l43yr 2025-09-08T17:57:51,045 Running command python setup.py bdist_wheel 2025-09-08T17:57:51,726 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' 2025-09-08T17:57:51,726 warnings.warn(msg) 2025-09-08T17:57:52,104 running bdist_wheel 2025-09-08T17:57:52,470 running build 2025-09-08T17:57:52,471 running build_py 2025-09-08T17:57:52,547 creating build/lib.linux-armv7l-cpython-313/deeptoolsintervals 2025-09-08T17:57:52,548 copying deeptoolsintervals/parse.py -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals 2025-09-08T17:57:52,548 copying deeptoolsintervals/enrichment.py -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals 2025-09-08T17:57:52,549 copying deeptoolsintervals/__init__.py -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals 2025-09-08T17:57:52,549 running egg_info 2025-09-08T17:57:52,624 writing deeptoolsintervals.egg-info/PKG-INFO 2025-09-08T17:57:52,625 writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt 2025-09-08T17:57:52,626 writing top-level names to deeptoolsintervals.egg-info/top_level.txt 2025-09-08T17:57:52,701 reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' 2025-09-08T17:57:52,704 reading manifest template 'MANIFEST.in' 2025-09-08T17:57:52,705 warning: no files found matching 'deeptoolsintervals/tree.*' 2025-09-08T17:57:52,709 writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' 2025-09-08T17:57:52,711 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. 2025-09-08T17:57:52,711 !! 2025-09-08T17:57:52,711 ******************************************************************************** 2025-09-08T17:57:52,711 ############################ 2025-09-08T17:57:52,711 # Package would be ignored # 2025-09-08T17:57:52,711 ############################ 2025-09-08T17:57:52,711 Python recognizes 'deeptoolsintervals.test' as an importable package[^1], 2025-09-08T17:57:52,711 but it is absent from setuptools' `packages` configuration. 2025-09-08T17:57:52,712 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T17:57:52,712 package, please make sure that 'deeptoolsintervals.test' is explicitly added 2025-09-08T17:57:52,712 to the `packages` configuration field. 2025-09-08T17:57:52,712 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T17:57:52,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T17:57:52,712 instead of `find_packages(...)`/`find:`). 2025-09-08T17:57:52,712 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T17:57:52,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T17:57:52,713 If you don't want 'deeptoolsintervals.test' to be distributed and are 2025-09-08T17:57:52,713 already explicitly excluding 'deeptoolsintervals.test' via 2025-09-08T17:57:52,713 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T17:57:52,713 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T17:57:52,713 combination with a more fine grained `package-data` configuration. 2025-09-08T17:57:52,713 You can read more about "package data files" on setuptools documentation page: 2025-09-08T17:57:52,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T17:57:52,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T17:57:52,714 even if it does not contain any `.py` files. 2025-09-08T17:57:52,714 On the other hand, currently there is no concept of package data 2025-09-08T17:57:52,714 directory, all directories are treated like packages. 2025-09-08T17:57:52,714 ******************************************************************************** 2025-09-08T17:57:52,714 !! 2025-09-08T17:57:52,714 check.warn(importable) 2025-09-08T17:57:52,714 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. 2025-09-08T17:57:52,715 !! 2025-09-08T17:57:52,715 ******************************************************************************** 2025-09-08T17:57:52,715 ############################ 2025-09-08T17:57:52,715 # Package would be ignored # 2025-09-08T17:57:52,715 ############################ 2025-09-08T17:57:52,715 Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], 2025-09-08T17:57:52,715 but it is absent from setuptools' `packages` configuration. 2025-09-08T17:57:52,715 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T17:57:52,716 package, please make sure that 'deeptoolsintervals.tree' is explicitly added 2025-09-08T17:57:52,716 to the `packages` configuration field. 2025-09-08T17:57:52,716 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T17:57:52,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T17:57:52,716 instead of `find_packages(...)`/`find:`). 2025-09-08T17:57:52,716 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T17:57:52,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T17:57:52,717 If you don't want 'deeptoolsintervals.tree' to be distributed and are 2025-09-08T17:57:52,717 already explicitly excluding 'deeptoolsintervals.tree' via 2025-09-08T17:57:52,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T17:57:52,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T17:57:52,717 combination with a more fine grained `package-data` configuration. 2025-09-08T17:57:52,717 You can read more about "package data files" on setuptools documentation page: 2025-09-08T17:57:52,717 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T17:57:52,718 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T17:57:52,718 even if it does not contain any `.py` files. 2025-09-08T17:57:52,718 On the other hand, currently there is no concept of package data 2025-09-08T17:57:52,718 directory, all directories are treated like packages. 2025-09-08T17:57:52,718 ******************************************************************************** 2025-09-08T17:57:52,718 !! 2025-09-08T17:57:52,718 check.warn(importable) 2025-09-08T17:57:52,718 creating build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,718 copying deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,718 copying deeptoolsintervals/test/GRCh38.84.bed -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/GRCh38.84.bed2 -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/GRCh38.84.bed6 -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/GRCh38.84.gtf.gz -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/GRCh38.84.labels.bed -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/noOverlaps.bed -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 copying deeptoolsintervals/test/strands.bed -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test 2025-09-08T17:57:52,719 creating build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,719 copying deeptoolsintervals/tree/findOverlaps.c -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,719 copying deeptoolsintervals/tree/gtf.c -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,720 copying deeptoolsintervals/tree/gtf.h -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,721 copying deeptoolsintervals/tree/hashTable.c -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,721 copying deeptoolsintervals/tree/kseq.h -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,722 copying deeptoolsintervals/tree/kstring.h -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,722 copying deeptoolsintervals/tree/murmur3.c -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,723 copying deeptoolsintervals/tree/murmur3.h -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,723 copying deeptoolsintervals/tree/tree.c -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,724 copying deeptoolsintervals/tree/tree.h -> build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:52,725 running build_ext 2025-09-08T17:57:53,054 building 'deeptoolsintervals.tree' extension 2025-09-08T17:57:53,055 creating build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree 2025-09-08T17:57:53,056 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/findOverlaps.c -o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/findOverlaps.o 2025-09-08T17:57:54,269 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/gtf.c -o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/gtf.o 2025-09-08T17:57:54,379 deeptoolsintervals/tree/gtf.c: In function ‘destroyGTFtree’: 2025-09-08T17:57:54,379 deeptoolsintervals/tree/gtf.c:58:15: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2025-09-08T17:57:54,379 58 | for(i=0; in_targets; i++) { 2025-09-08T17:57:54,379 | ^ 2025-09-08T17:57:55,352 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/hashTable.c -o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/hashTable.o 2025-09-08T17:57:55,457 deeptoolsintervals/tree/hashTable.c: In function ‘rehashHT’: 2025-09-08T17:57:55,457 deeptoolsintervals/tree/hashTable.c:55:15: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-09-08T17:57:55,457 55 | for(i=0; il; i++) { 2025-09-08T17:57:55,457 | ^ 2025-09-08T17:57:55,458 deeptoolsintervals/tree/hashTable.c: In function ‘growHT’: 2025-09-08T17:57:55,458 deeptoolsintervals/tree/hashTable.c:72:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-09-08T17:57:55,458 72 | for(i=ht->l; im; i++) { 2025-09-08T17:57:55,458 | ^ 2025-09-08T17:57:55,458 deeptoolsintervals/tree/hashTable.c: In function ‘destroyHT’: 2025-09-08T17:57:55,459 deeptoolsintervals/tree/hashTable.c:103:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-09-08T17:57:55,459 103 | for(i=0; il; i++) free(ht->str[i]); 2025-09-08T17:57:55,459 | ^ 2025-09-08T17:57:55,459 deeptoolsintervals/tree/hashTable.c:105:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-09-08T17:57:55,459 105 | for(i=0; im; i++) { 2025-09-08T17:57:55,459 | ^ 2025-09-08T17:57:55,460 deeptoolsintervals/tree/hashTable.c: In function ‘val2strHT’: 2025-09-08T17:57:55,460 deeptoolsintervals/tree/hashTable.c:139:11: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-09-08T17:57:55,460 139 | if(val>=ht->l) return NULL; 2025-09-08T17:57:55,460 | ^~ 2025-09-08T17:57:55,715 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/murmur3.c -o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/murmur3.o 2025-09-08T17:57:56,332 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/tree.c -o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/tree.o 2025-09-08T17:57:56,691 deeptoolsintervals/tree/tree.c: In function ‘Numeric2Uint’: 2025-09-08T17:57:56,691 deeptoolsintervals/tree/tree.c:49:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-08T17:57:56,691 49 | if(l > 0xFFFFFFFF) { 2025-09-08T17:57:56,691 | ^ 2025-09-08T17:57:57,119 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/findOverlaps.o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/gtf.o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/hashTable.o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/murmur3.o build/temp.linux-armv7l-cpython-313/deeptoolsintervals/tree/tree.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/python3.13/config-3.13-arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lz -lpython3.13 -o build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree.cpython-313-arm-linux-gnueabihf.so 2025-09-08T17:57:57,335 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T17:57:57,335 !! 2025-09-08T17:57:57,335 ******************************************************************************** 2025-09-08T17:57:57,335 Please avoid running ``setup.py`` directly. 2025-09-08T17:57:57,336 Instead, use pypa/build, pypa/installer or other 2025-09-08T17:57:57,336 standards-based tools. 2025-09-08T17:57:57,336 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T17:57:57,336 or your builds will no longer be supported. 2025-09-08T17:57:57,336 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T17:57:57,336 ******************************************************************************** 2025-09-08T17:57:57,336 !! 2025-09-08T17:57:57,336 self.initialize_options() 2025-09-08T17:57:57,411 installing to build/bdist.linux-armv7l/wheel 2025-09-08T17:57:57,411 running install 2025-09-08T17:57:57,435 running install_lib 2025-09-08T17:57:57,508 creating build/bdist.linux-armv7l/wheel 2025-09-08T17:57:57,509 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals 2025-09-08T17:57:57,510 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals 2025-09-08T17:57:57,511 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2025-09-08T17:57:57,512 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/tree.h -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,512 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/tree.c -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,513 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/murmur3.h -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,514 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/murmur3.c -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,514 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/kstring.h -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,515 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/kseq.h -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,515 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/hashTable.c -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,516 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/gtf.h -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,517 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/gtf.c -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,517 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/tree/findOverlaps.c -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/tree 2025-09-08T17:57:57,518 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2025-09-08T17:57:57,519 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/strands.bed -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,519 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/noOverlaps.bed -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,520 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.labels.bed -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,520 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.gtf.gz -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,521 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.bed6 -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,521 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.bed2 -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,522 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,522 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.bed -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,523 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals/test 2025-09-08T17:57:57,524 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/__init__.py -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals 2025-09-08T17:57:57,524 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/enrichment.py -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals 2025-09-08T17:57:57,525 copying build/lib.linux-armv7l-cpython-313/deeptoolsintervals/parse.py -> build/bdist.linux-armv7l/wheel/./deeptoolsintervals 2025-09-08T17:57:57,526 running install_egg_info 2025-09-08T17:57:57,602 Copying deeptoolsintervals.egg-info to build/bdist.linux-armv7l/wheel/./deeptoolsintervals-0.1.8-py3.13.egg-info 2025-09-08T17:57:57,605 running install_scripts 2025-09-08T17:57:57,654 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals-0.1.8.dist-info/WHEEL 2025-09-08T17:57:57,655 creating '/tmp/pip-wheel-5c_l43yr/deeptoolsintervals-0.1.8-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T17:57:57,657 adding 'deeptoolsintervals/__init__.py' 2025-09-08T17:57:57,658 adding 'deeptoolsintervals/enrichment.py' 2025-09-08T17:57:57,662 adding 'deeptoolsintervals/parse.py' 2025-09-08T17:57:57,688 adding 'deeptoolsintervals/tree.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T17:57:57,691 adding 'deeptoolsintervals/test/GRCh38.84.2.gtf.gz' 2025-09-08T17:57:57,691 adding 'deeptoolsintervals/test/GRCh38.84.bed' 2025-09-08T17:57:57,692 adding 'deeptoolsintervals/test/GRCh38.84.bed12.bz2' 2025-09-08T17:57:57,693 adding 'deeptoolsintervals/test/GRCh38.84.bed2' 2025-09-08T17:57:57,694 adding 'deeptoolsintervals/test/GRCh38.84.bed6' 2025-09-08T17:57:57,695 adding 'deeptoolsintervals/test/GRCh38.84.gtf.gz' 2025-09-08T17:57:57,696 adding 'deeptoolsintervals/test/GRCh38.84.labels.bed' 2025-09-08T17:57:57,697 adding 'deeptoolsintervals/test/noOverlaps.bed' 2025-09-08T17:57:57,698 adding 'deeptoolsintervals/test/strands.bed' 2025-09-08T17:57:57,699 adding 'deeptoolsintervals/tree/findOverlaps.c' 2025-09-08T17:57:57,702 adding 'deeptoolsintervals/tree/gtf.c' 2025-09-08T17:57:57,703 adding 'deeptoolsintervals/tree/gtf.h' 2025-09-08T17:57:57,704 adding 'deeptoolsintervals/tree/hashTable.c' 2025-09-08T17:57:57,706 adding 'deeptoolsintervals/tree/kseq.h' 2025-09-08T17:57:57,707 adding 'deeptoolsintervals/tree/kstring.h' 2025-09-08T17:57:57,708 adding 'deeptoolsintervals/tree/murmur3.c' 2025-09-08T17:57:57,709 adding 'deeptoolsintervals/tree/murmur3.h' 2025-09-08T17:57:57,711 adding 'deeptoolsintervals/tree/tree.c' 2025-09-08T17:57:57,712 adding 'deeptoolsintervals/tree/tree.h' 2025-09-08T17:57:57,713 adding 'deeptoolsintervals-0.1.8.dist-info/METADATA' 2025-09-08T17:57:57,714 adding 'deeptoolsintervals-0.1.8.dist-info/WHEEL' 2025-09-08T17:57:57,714 adding 'deeptoolsintervals-0.1.8.dist-info/top_level.txt' 2025-09-08T17:57:57,715 adding 'deeptoolsintervals-0.1.8.dist-info/RECORD' 2025-09-08T17:57:57,716 removing build/bdist.linux-armv7l/wheel 2025-09-08T17:57:57,864 Building wheel for deeptoolsintervals (setup.py): finished with status 'done' 2025-09-08T17:57:57,866 Created wheel for deeptoolsintervals: filename=deeptoolsintervals-0.1.8-cp313-cp313-linux_armv7l.whl size=109900 sha256=5e7e960addcc0bdbed205befa57378bd120f6965573b48e4320e9f641478eafb 2025-09-08T17:57:57,867 Stored in directory: /tmp/pip-ephem-wheel-cache-svbcw30p/wheels/da/7f/21/01dfa2dfb16e29e11844e5c449488a3f792eb9f8cee7e4cb71 2025-09-08T17:57:57,874 Successfully built deeptoolsintervals 2025-09-08T17:57:57,876 Removed build tracker: '/tmp/pip-build-tracker-sni_8s8n'