2025-09-08T19:04:25,773 Created temporary directory: /tmp/pip-build-tracker-rj3kr1ku 2025-09-08T19:04:25,774 Initialized build tracking at /tmp/pip-build-tracker-rj3kr1ku 2025-09-08T19:04:25,774 Created build tracker: /tmp/pip-build-tracker-rj3kr1ku 2025-09-08T19:04:25,774 Entered build tracker: /tmp/pip-build-tracker-rj3kr1ku 2025-09-08T19:04:25,774 Created temporary directory: /tmp/pip-wheel-gyzn3mew 2025-09-08T19:04:25,778 Created temporary directory: /tmp/pip-ephem-wheel-cache-1u35dz9b 2025-09-08T19:04:25,834 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T19:04:25,837 2 location(s) to search for versions of uga: 2025-09-08T19:04:25,837 * https://pypi.org/simple/uga/ 2025-09-08T19:04:25,837 * https://www.piwheels.org/simple/uga/ 2025-09-08T19:04:25,837 Fetching project page and analyzing links: https://pypi.org/simple/uga/ 2025-09-08T19:04:25,838 Getting page https://pypi.org/simple/uga/ 2025-09-08T19:04:25,839 Found index url https://pypi.org/simple/ 2025-09-08T19:04:25,989 Fetched page https://pypi.org/simple/uga/ as application/vnd.pypi.simple.v1+json 2025-09-08T19:04:25,992 Found link https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz (from https://pypi.org/simple/uga/), version: 2.0 2025-09-08T19:04:25,993 Found link https://files.pythonhosted.org/packages/1c/d6/a97dd03cb53d33cf7c416104b018d86692ba0c2aabe0f8c0ccadf9e3e765/uga-2.0.1.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.1 2025-09-08T19:04:25,993 Found link https://files.pythonhosted.org/packages/58/7b/5005fe02a229b5ce76c2a917d9460e0bf3540972392f8eaff38ab1a47e0b/uga-2.0.2.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.2 2025-09-08T19:04:25,994 Found link https://files.pythonhosted.org/packages/d9/85/968d8552bd6c6199cea5842ee47db06558b1a7ce2a26e417fc40128b6d97/uga-2.0.3.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.3 2025-09-08T19:04:25,994 Found link https://files.pythonhosted.org/packages/50/67/a01e7e269051d4b1ba45db5607d68471ccf471ce3c0cb9b2901e3da53854/uga-2.0.4.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.4 2025-09-08T19:04:25,995 Found link https://files.pythonhosted.org/packages/1a/c0/99dfb28c44ba27be80436b5f1bb370fcb764ecbb4e69038d3eb7eacb247e/uga-2.0.5.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.5 2025-09-08T19:04:25,995 Found link https://files.pythonhosted.org/packages/89/55/7ae9e605effe88754f29b901fe962391ca9e945cf527a11e24f4b60a3c11/uga-2.0.6.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.6 2025-09-08T19:04:25,996 Found link https://files.pythonhosted.org/packages/49/34/6aab750c3cbd08ba7079b789bcedc045e8bdd6530eef5ca16a1a9988a1ca/uga-2.0.7.tar.gz (from https://pypi.org/simple/uga/), version: 2.0.7 2025-09-08T19:04:25,997 Fetching project page and analyzing links: https://www.piwheels.org/simple/uga/ 2025-09-08T19:04:25,997 Getting page https://www.piwheels.org/simple/uga/ 2025-09-08T19:04:25,999 Found index url https://www.piwheels.org/simple/ 2025-09-08T19:04:26,098 Fetched page https://www.piwheels.org/simple/uga/ as text/html 2025-09-08T19:04:26,105 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp39-cp39-linux_armv6l.whl#sha256=b4fb6eb8856ba46db111a66a8eb2b11d1aea08b4eb620a3ea7274516893c3af5 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,105 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp39-cp39-linux_armv7l.whl#sha256=b4fb6eb8856ba46db111a66a8eb2b11d1aea08b4eb620a3ea7274516893c3af5 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,105 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp35-cp35m-linux_armv6l.whl#sha256=469d902ba03a1cef7b56d68e6e1f32dc7a5f3ae7a09b9368d37bc2f42a783582 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,105 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp35-cp35m-linux_armv7l.whl#sha256=469d902ba03a1cef7b56d68e6e1f32dc7a5f3ae7a09b9368d37bc2f42a783582 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp37-cp37m-linux_armv7l.whl#sha256=15ddf61614a47076c82b3d2423000d684b480af4e976f24336d2552977d8d359 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.7-cp37-cp37m-linux_armv6l.whl#sha256=15ddf61614a47076c82b3d2423000d684b480af4e976f24336d2552977d8d359 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=19e6ca063f7eaa8a1c777d24590b2235a74e5bd0b4ebf6f9f84e18a5f275b703 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=19e6ca063f7eaa8a1c777d24590b2235a74e5bd0b4ebf6f9f84e18a5f275b703 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp35-cp35m-linux_armv6l.whl#sha256=adb9c18a283dcfe8e1f43cf2868bbf7f3a3a66a7e61fda4b97c95e783f282aff (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp35-cp35m-linux_armv7l.whl#sha256=adb9c18a283dcfe8e1f43cf2868bbf7f3a3a66a7e61fda4b97c95e783f282aff (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2f1dcf8a76bb64180bd49b9b3aa6b024a4dc4544d1d60b2d43d20d7e079f281 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,106 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2f1dcf8a76bb64180bd49b9b3aa6b024a4dc4544d1d60b2d43d20d7e079f281 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=f401f01d0e2d62702e3fe794e0068b94ad6f55f0a5d92c7f59c78fa17d748b32 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=f401f01d0e2d62702e3fe794e0068b94ad6f55f0a5d92c7f59c78fa17d748b32 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp35-cp35m-linux_armv7l.whl#sha256=491a02ba97e9eb47d38732cd3ef41840a9aea5d14325b68144c7d2a48a026e0d (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp35-cp35m-linux_armv6l.whl#sha256=491a02ba97e9eb47d38732cd3ef41840a9aea5d14325b68144c7d2a48a026e0d (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp37-cp37m-linux_armv7l.whl#sha256=6bba3caa8c57b41d8f66eecd0f1eb41d0914362acd3664f88a33e63a9a0200f0 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.5-cp37-cp37m-linux_armv6l.whl#sha256=6bba3caa8c57b41d8f66eecd0f1eb41d0914362acd3664f88a33e63a9a0200f0 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=1e2e4afcd27e57550da17b606b1ed1a3e10d00c042aec434ec39f668fd9b9673 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,107 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=1e2e4afcd27e57550da17b606b1ed1a3e10d00c042aec434ec39f668fd9b9673 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp35-cp35m-linux_armv6l.whl#sha256=01d245dbc747468404c33a4e2da546fd8f8c16657d6ba518996349d745ddc12b (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp35-cp35m-linux_armv7l.whl#sha256=01d245dbc747468404c33a4e2da546fd8f8c16657d6ba518996349d745ddc12b (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp37-cp37m-linux_armv6l.whl#sha256=6301b8317fda7159f64ff58c5b5a9535422c8f58b98440dd44eb9f1d049889cd (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.4-cp37-cp37m-linux_armv7l.whl#sha256=6301b8317fda7159f64ff58c5b5a9535422c8f58b98440dd44eb9f1d049889cd (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=19595ba8c837169226774abafcd5d1796cfd63893d5df5993f6f02631cf3f9e8 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=19595ba8c837169226774abafcd5d1796cfd63893d5df5993f6f02631cf3f9e8 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=4ae5094a5d2ac0045c05a95364489c3fef767b5ec34a527317e3eacd6889db30 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,108 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=4ae5094a5d2ac0045c05a95364489c3fef767b5ec34a527317e3eacd6889db30 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=9164b6be38accde172bb7d02e8236d78f4a524cd725964eacbac814d4c214cd8 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=9164b6be38accde172bb7d02e8236d78f4a524cd725964eacbac814d4c214cd8 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=81c811d08f5395585ef4afb30b07f59f6696b27e91c2e7dfd250659b78e2b1fb (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=81c811d08f5395585ef4afb30b07f59f6696b27e91c2e7dfd250659b78e2b1fb (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp35-cp35m-linux_armv6l.whl#sha256=8df33993e25739b0c2ecf50ba74014958c2b3a7ba2bb06c13894583ce07a6c5d (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp35-cp35m-linux_armv7l.whl#sha256=8df33993e25739b0c2ecf50ba74014958c2b3a7ba2bb06c13894583ce07a6c5d (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,109 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=5ad5c598603eba3a3905831df3b9dc6a6889d3baf37c0d6d657f24a48dd346c1 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=5ad5c598603eba3a3905831df3b9dc6a6889d3baf37c0d6d657f24a48dd346c1 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=89b29333f3cdcb8d83850465197343059fc01a115bf3844569a14f9908a10c6e (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=89b29333f3cdcb8d83850465197343059fc01a115bf3844569a14f9908a10c6e (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=0c73f6fdf7ecda943ac8a6d904970f0f1f773c23440b50de8e8fbc4ace03a3d5 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=0c73f6fdf7ecda943ac8a6d904970f0f1f773c23440b50de8e8fbc4ace03a3d5 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=95052aab0a69abd2738d368663a3ca61e9270aec462c54936e8ad838ed45de95 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,110 Skipping link: No binaries permitted for uga: https://archive1.piwheels.org/simple/uga/uga-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=95052aab0a69abd2738d368663a3ca61e9270aec462c54936e8ad838ed45de95 (from https://www.piwheels.org/simple/uga/) 2025-09-08T19:04:26,111 Skipping link: not a file: https://www.piwheels.org/simple/uga/ 2025-09-08T19:04:26,111 Skipping link: not a file: https://pypi.org/simple/uga/ 2025-09-08T19:04:26,137 Given no hashes to check 1 links for project 'uga': discarding no candidates 2025-09-08T19:04:26,138 Collecting uga==2.0 2025-09-08T19:04:26,139 Created temporary directory: /tmp/pip-unpack-wf4aw0a7 2025-09-08T19:04:26,281 Downloading uga-2.0.tar.gz (709 kB) 2025-09-08T19:04:26,494 Added uga==2.0 from https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz to build tracker '/tmp/pip-build-tracker-rj3kr1ku' 2025-09-08T19:04:26,495 Running setup.py (path:/tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/setup.py) egg_info for package uga 2025-09-08T19:04:26,496 Created temporary directory: /tmp/pip-pip-egg-info-hqfwrhpx 2025-09-08T19:04:26,496 Preparing metadata (setup.py): started 2025-09-08T19:04:26,497 Running command python setup.py egg_info 2025-09-08T19:04:27,005 /tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/setup.py:2: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T19:04:27,005 !! 2025-09-08T19:04:27,005 ******************************************************************************** 2025-09-08T19:04:27,006 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T19:04:27,006 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T19:04:27,006 calls to avoid build errors in the future. 2025-09-08T19:04:27,006 ******************************************************************************** 2025-09-08T19:04:27,006 !! 2025-09-08T19:04:27,006 from setuptools.command.test import test as TestCommand 2025-09-08T19:04:27,716 Traceback (most recent call last): 2025-09-08T19:04:27,719 File "", line 2, in 2025-09-08T19:04:27,719 exec(compile(''' 2025-09-08T19:04:27,719 ~~~~^^^^^^^^^^^^ 2025-09-08T19:04:27,719 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:04:27,719 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,719 ...<32 lines>... 2025-09-08T19:04:27,720 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:04:27,720 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,720 ''' % ('/tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/setup.py',), "", "exec")) 2025-09-08T19:04:27,720 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,720 File "", line 35, in 2025-09-08T19:04:27,720 File "/tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/setup.py", line 21, in 2025-09-08T19:04:27,720 ext_modules = cythonize(["uga/Geno.pyx","uga/Geno.pxd","uga/Model.pyx","uga/Variant.pyx","uga/Variant.pxd"]), 2025-09-08T19:04:27,720 ~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,720 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 978, in cythonize 2025-09-08T19:04:27,721 module_list, module_metadata = create_extension_list( 2025-09-08T19:04:27,721 ~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,721 module_list, 2025-09-08T19:04:27,721 ^^^^^^^^^^^^ 2025-09-08T19:04:27,721 ...<4 lines>... 2025-09-08T19:04:27,721 language=language, 2025-09-08T19:04:27,721 ^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,721 aliases=aliases) 2025-09-08T19:04:27,721 ^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,722 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 809, in create_extension_list 2025-09-08T19:04:27,722 for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern): 2025-09-08T19:04:27,722 ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,722 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 80, in nonempty 2025-09-08T19:04:27,722 raise ValueError(error_msg) 2025-09-08T19:04:27,722 ValueError: 'uga/Geno.pyx' doesn't match any files 2025-09-08T19:04:27,877 ERROR: python setup.py egg_info exited with 1 2025-09-08T19:04:27,889 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T19:04:27,889 exec(compile('"'"''"'"''"'"' 2025-09-08T19:04:27,889 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:04:27,889 # 2025-09-08T19:04:27,889 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T19:04:27,889 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T19:04:27,889 # - It provides a clear error message when setuptools is not installed. 2025-09-08T19:04:27,889 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T19:04:27,889 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T19:04:27,889 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T19:04:27,889 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T19:04:27,889 import os, sys, tokenize, traceback 2025-09-08T19:04:27,889 2025-09-08T19:04:27,889 try: 2025-09-08T19:04:27,889 import setuptools 2025-09-08T19:04:27,889 except ImportError: 2025-09-08T19:04:27,889 print( 2025-09-08T19:04:27,889 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T19:04:27,889 "the build environment with exception:", 2025-09-08T19:04:27,889 file=sys.stderr, 2025-09-08T19:04:27,889 ) 2025-09-08T19:04:27,889 traceback.print_exc() 2025-09-08T19:04:27,889 sys.exit(1) 2025-09-08T19:04:27,889 2025-09-08T19:04:27,889 __file__ = %r 2025-09-08T19:04:27,889 sys.argv[0] = __file__ 2025-09-08T19:04:27,889 2025-09-08T19:04:27,889 if os.path.exists(__file__): 2025-09-08T19:04:27,889 filename = __file__ 2025-09-08T19:04:27,889 with tokenize.open(__file__) as f: 2025-09-08T19:04:27,889 setup_py_code = f.read() 2025-09-08T19:04:27,889 else: 2025-09-08T19:04:27,889 filename = "" 2025-09-08T19:04:27,889 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T19:04:27,889 2025-09-08T19:04:27,889 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:04:27,889 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-hqfwrhpx[/] 2025-09-08T19:04:27,889 [bold magenta]cwd[/]: /tmp/pip-wheel-gyzn3mew/uga_f9d849229e414050ba25f95f56346996/ 2025-09-08T19:04:27,889 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T19:04:27,890 ERROR: metadata generation failed 2025-09-08T19:04:27,897 Exception information: 2025-09-08T19:04:27,897 Traceback (most recent call last): 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T19:04:27,897 call_subprocess( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 args, 2025-09-08T19:04:27,897 ^^^^^ 2025-09-08T19:04:27,897 ...<2 lines>... 2025-09-08T19:04:27,897 spinner=spinner, 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T19:04:27,897 raise error 2025-09-08T19:04:27,897 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T19:04:27,897 2025-09-08T19:04:27,897 The above exception was the direct cause of the following exception: 2025-09-08T19:04:27,897 2025-09-08T19:04:27,897 Traceback (most recent call last): 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T19:04:27,897 status = _inner_run() 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T19:04:27,897 return self.run(options, args) 2025-09-08T19:04:27,897 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T19:04:27,897 return func(self, options, args) 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T19:04:27,897 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T19:04:27,897 result = self._result = resolver.resolve( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T19:04:27,897 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T19:04:27,897 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T19:04:27,897 if not criterion.candidates: 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T19:04:27,897 return bool(self._sequence) 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T19:04:27,897 self._bool = any(self) 2025-09-08T19:04:27,897 ~~~^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T19:04:27,897 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T19:04:27,897 ^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T19:04:27,897 candidate = func() 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T19:04:27,897 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 link, template, name, version 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T19:04:27,897 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 link, 2025-09-08T19:04:27,897 ^^^^^ 2025-09-08T19:04:27,897 ...<3 lines>... 2025-09-08T19:04:27,897 version=version, 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T19:04:27,897 super().__init__( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 link=link, 2025-09-08T19:04:27,897 ^^^^^^^^^^ 2025-09-08T19:04:27,897 ...<4 lines>... 2025-09-08T19:04:27,897 version=version, 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T19:04:27,897 self.dist = self._prepare() 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T19:04:27,897 dist = self._prepare_distribution() 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T19:04:27,897 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T19:04:27,897 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T19:04:27,897 dist = _get_prepared_distribution( 2025-09-08T19:04:27,897 req, 2025-09-08T19:04:27,897 ...<3 lines>... 2025-09-08T19:04:27,897 self.check_build_deps, 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T19:04:27,897 abstract_dist.prepare_distribution_metadata( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 finder, build_isolation, check_build_deps 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T19:04:27,897 self.req.prepare_metadata() 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T19:04:27,897 self.metadata_directory = generate_metadata_legacy( 2025-09-08T19:04:27,897 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:04:27,897 build_env=self.build_env, 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ...<3 lines>... 2025-09-08T19:04:27,897 details=details, 2025-09-08T19:04:27,897 ^^^^^^^^^^^^^^^^ 2025-09-08T19:04:27,897 ) 2025-09-08T19:04:27,897 ^ 2025-09-08T19:04:27,897 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T19:04:27,897 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T19:04:27,897 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T19:04:27,920 Removed uga==2.0 from https://files.pythonhosted.org/packages/4d/36/f482cd61f6203a95145fba1337b51dc4b8fcd6f17645fdc4971547a18f20/uga-2.0.tar.gz from build tracker '/tmp/pip-build-tracker-rj3kr1ku' 2025-09-08T19:04:27,920 Removed build tracker: '/tmp/pip-build-tracker-rj3kr1ku'