2025-09-08T19:09:35,169 Created temporary directory: /tmp/pip-build-tracker-4d1mzx5f 2025-09-08T19:09:35,169 Initialized build tracking at /tmp/pip-build-tracker-4d1mzx5f 2025-09-08T19:09:35,169 Created build tracker: /tmp/pip-build-tracker-4d1mzx5f 2025-09-08T19:09:35,169 Entered build tracker: /tmp/pip-build-tracker-4d1mzx5f 2025-09-08T19:09:35,170 Created temporary directory: /tmp/pip-wheel-1_p9beiv 2025-09-08T19:09:35,173 Created temporary directory: /tmp/pip-ephem-wheel-cache-ie188k0m 2025-09-08T19:09:35,230 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T19:09:35,232 2 location(s) to search for versions of probabilistic2020: 2025-09-08T19:09:35,232 * https://pypi.org/simple/probabilistic2020/ 2025-09-08T19:09:35,232 * https://www.piwheels.org/simple/probabilistic2020/ 2025-09-08T19:09:35,232 Fetching project page and analyzing links: https://pypi.org/simple/probabilistic2020/ 2025-09-08T19:09:35,233 Getting page https://pypi.org/simple/probabilistic2020/ 2025-09-08T19:09:35,234 Found index url https://pypi.org/simple/ 2025-09-08T19:09:35,307 Fetched page https://pypi.org/simple/probabilistic2020/ as application/vnd.pypi.simple.v1+json 2025-09-08T19:09:35,309 Found link https://files.pythonhosted.org/packages/fa/48/119e543efc590b5373a68dcb704f2b52df46a73746d5835c4f2c61b53e27/probabilistic2020-1.0.0.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.0 2025-09-08T19:09:35,310 Found link https://files.pythonhosted.org/packages/2e/00/5c9a5fe6050e17f4974d14df400ae7e93a62e8b37371b33af4f2e1a4c8f5/probabilistic2020-1.0.1.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.1 2025-09-08T19:09:35,310 Found link https://files.pythonhosted.org/packages/a0/b7/7879eb08ab3a4c3f630deb37b705a12074880afa7f0b8f7ad9c611cbeb50/probabilistic2020-1.0.2.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.2 2025-09-08T19:09:35,310 Found link https://files.pythonhosted.org/packages/dc/60/e3cb0c222d9f2a4fba7cfe9aa180095e689eda05ff5315201176c0f0813e/probabilistic2020-1.0.3.post1.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.3.post1 2025-09-08T19:09:35,310 Found link https://files.pythonhosted.org/packages/b3/8b/d9a2de8ccb78f50bb9c2107a39b645472e156ef2b53bf7edea89ed243b4c/probabilistic2020-1.0.4.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.4 2025-09-08T19:09:35,311 Found link https://files.pythonhosted.org/packages/b8/50/de8d0ec282eb853467b5d01df38bc34b654a55349bfeca92744b1af51659/probabilistic2020-1.0.5.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.5 2025-09-08T19:09:35,311 Found link https://files.pythonhosted.org/packages/42/3c/41a788891b605cbace92168f2e2048cc30f89e9ae74c8fb79eb58227987a/probabilistic2020-1.0.6.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.6 2025-09-08T19:09:35,311 Found link https://files.pythonhosted.org/packages/ba/85/aeb7d2b0a42d2572bef16ec4b54ab19025b14939f5d266319b88c9253f5a/probabilistic2020-1.0.7.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.0.7 2025-09-08T19:09:35,311 Found link https://files.pythonhosted.org/packages/41/d7/a142a18c9676a20c5f309c027c39779f1e312f44af98a04c301d9862c6fb/probabilistic2020-1.1.0.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.1.0 2025-09-08T19:09:35,311 Found link https://files.pythonhosted.org/packages/96/5b/4a1b571cdf716507dc83b4b763df3b09a5def7562814d7aef8364ca5d270/probabilistic2020-1.1.1.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.1.1 2025-09-08T19:09:35,312 Found link https://files.pythonhosted.org/packages/30/ff/feae37090012be833521cf374700b1609d102fd3dfa8b5690ee657c9708f/probabilistic2020-1.2.0.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.2.0 2025-09-08T19:09:35,312 Found link https://files.pythonhosted.org/packages/ab/e3/41b006a57ddc39d0d598212f83eb4a31319839b0b2d1551c1747d9da83a2/probabilistic2020-1.2.1.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.2.1 2025-09-08T19:09:35,312 Found link https://files.pythonhosted.org/packages/31/27/d1769ce84e6d067a5d3bc3c3f97fd6367dbbaf21ef67678cc44bb2681778/probabilistic2020-1.2.2.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.2.2 2025-09-08T19:09:35,312 Found link https://files.pythonhosted.org/packages/d7/58/32b490f92ab7a44a8ea617134ca5666a53e167634fa7c82d445a861577d1/probabilistic2020-1.2.3.tar.gz (from https://pypi.org/simple/probabilistic2020/), version: 1.2.3 2025-09-08T19:09:35,313 Fetching project page and analyzing links: https://www.piwheels.org/simple/probabilistic2020/ 2025-09-08T19:09:35,313 Getting page https://www.piwheels.org/simple/probabilistic2020/ 2025-09-08T19:09:35,314 Found index url https://www.piwheels.org/simple/ 2025-09-08T19:09:35,413 Fetched page https://www.piwheels.org/simple/probabilistic2020/ as text/html 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp34-cp34m-linux_armv7l.whl#sha256=d259e3cf96214329e349d38c6b7718430ec670ddb0b183ad9daa218213dd7c44 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp34-cp34m-linux_armv6l.whl#sha256=d259e3cf96214329e349d38c6b7718430ec670ddb0b183ad9daa218213dd7c44 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp35-cp35m-linux_armv7l.whl#sha256=835827338b8e03ccc5203b2211af245e34efc9d0598fbd4f03ddbceb3c383836 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp35-cp35m-linux_armv6l.whl#sha256=835827338b8e03ccc5203b2211af245e34efc9d0598fbd4f03ddbceb3c383836 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp37-cp37m-linux_armv6l.whl#sha256=bd0bccd37d87683de0b081f70ae2f4b2c9a201eb25b0c1503fd333f879e32f96 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.3-cp37-cp37m-linux_armv7l.whl#sha256=bd0bccd37d87683de0b081f70ae2f4b2c9a201eb25b0c1503fd333f879e32f96 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,420 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=49d30cdb2956719690052f4c99bf60cd9dba5e6de20d4c64bab18a7c7313bebd (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,421 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=49d30cdb2956719690052f4c99bf60cd9dba5e6de20d4c64bab18a7c7313bebd (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,421 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.2-cp34-cp34m-linux_armv6l.whl#sha256=01ff0304774c3c6a469ed49680deb34e7b910ab25d544c669ec296ba39c40178 (from 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https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=d5e462020f360c4bbdf9cad787125b16bf1437ece54f6fb2a2f81042ae831f92 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.0-cp34-cp34m-linux_armv7l.whl#sha256=c56e145d65ecbb89359df832000f94341a11a0147ea80a3869ab56fbab845d40 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.2.0-cp34-cp34m-linux_armv6l.whl#sha256=c56e145d65ecbb89359df832000f94341a11a0147ea80a3869ab56fbab845d40 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.1.1-cp34-cp34m-linux_armv7l.whl#sha256=0724b22d7a881975d589e46e30b4d3f7aaf3be7ac4b8215dc447753a0cbd3d1c (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.1.1-cp34-cp34m-linux_armv6l.whl#sha256=0724b22d7a881975d589e46e30b4d3f7aaf3be7ac4b8215dc447753a0cbd3d1c (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,422 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.1.0-cp34-cp34m-linux_armv7l.whl#sha256=a78d9cf13f819d236ca225ea1d10323f1ff57930eaecbfe615d7b2f92ca74489 (from 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https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,423 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.5-cp34-cp34m-linux_armv6l.whl#sha256=bfddb1887143f3128bdd4300b6f4bae8cc16e7af522480632d1da3889975053d (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,423 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.4-cp34-cp34m-linux_armv7l.whl#sha256=a120b528f7f1d5301d6f4878b1fa6bfabce4cc8a02ac2f88b2d02ceef3329619 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,423 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.4-cp34-cp34m-linux_armv6l.whl#sha256=a120b528f7f1d5301d6f4878b1fa6bfabce4cc8a02ac2f88b2d02ceef3329619 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,423 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.2-cp34-cp34m-linux_armv7l.whl#sha256=e803a122d618df4affe98fd3ad6257a81942114821894ce15fbb7c3345b4f4a6 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.2-cp34-cp34m-linux_armv6l.whl#sha256=e803a122d618df4affe98fd3ad6257a81942114821894ce15fbb7c3345b4f4a6 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.1-cp34-cp34m-linux_armv7l.whl#sha256=a4214a962fc19569a727d9bc1f1479c4fe2927caa61ab0b940b3a9bda7d202a1 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.1-cp34-cp34m-linux_armv6l.whl#sha256=a4214a962fc19569a727d9bc1f1479c4fe2927caa61ab0b940b3a9bda7d202a1 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=71683255249f266fb0b1990e0d7fe1c83d3bfaff6a9c267e4e7be4fed2e76307 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: No binaries permitted for probabilistic2020: https://archive1.piwheels.org/simple/probabilistic2020/probabilistic2020-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=71683255249f266fb0b1990e0d7fe1c83d3bfaff6a9c267e4e7be4fed2e76307 (from https://www.piwheels.org/simple/probabilistic2020/) 2025-09-08T19:09:35,424 Skipping link: not a file: https://www.piwheels.org/simple/probabilistic2020/ 2025-09-08T19:09:35,424 Skipping link: not a file: https://pypi.org/simple/probabilistic2020/ 2025-09-08T19:09:35,452 Given no hashes to check 1 links for project 'probabilistic2020': discarding no candidates 2025-09-08T19:09:35,454 Collecting probabilistic2020==1.2.3 2025-09-08T19:09:35,455 Created temporary directory: /tmp/pip-unpack-8ut1z8_i 2025-09-08T19:09:35,594 Downloading probabilistic2020-1.2.3.tar.gz (184 kB) 2025-09-08T19:09:35,679 Added probabilistic2020==1.2.3 from https://files.pythonhosted.org/packages/d7/58/32b490f92ab7a44a8ea617134ca5666a53e167634fa7c82d445a861577d1/probabilistic2020-1.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-4d1mzx5f' 2025-09-08T19:09:35,680 Running setup.py (path:/tmp/pip-wheel-1_p9beiv/probabilistic2020_dd629627d8aa430ea18e9c2a1223728d/setup.py) egg_info for package probabilistic2020 2025-09-08T19:09:35,680 Created temporary directory: /tmp/pip-pip-egg-info-8l3kx2er 2025-09-08T19:09:35,680 Preparing metadata (setup.py): started 2025-09-08T19:09:35,681 Running command python setup.py egg_info 2025-09-08T19:09:37,077 running egg_info 2025-09-08T19:09:37,153 creating /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info 2025-09-08T19:09:37,153 writing /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/PKG-INFO 2025-09-08T19:09:37,154 writing dependency_links to /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/dependency_links.txt 2025-09-08T19:09:37,155 writing entry points to /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/entry_points.txt 2025-09-08T19:09:37,155 writing requirements to /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/requires.txt 2025-09-08T19:09:37,156 writing top-level names to /tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/top_level.txt 2025-09-08T19:09:37,156 writing manifest file '/tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/SOURCES.txt' 2025-09-08T19:09:37,463 reading manifest file '/tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/SOURCES.txt' 2025-09-08T19:09:37,464 reading manifest template 'MANIFEST.in' 2025-09-08T19:09:37,465 warning: no files found matching 'prob2020/console/frameshift_lrt.R' 2025-09-08T19:09:37,468 writing manifest file '/tmp/pip-pip-egg-info-8l3kx2er/probabilistic2020.egg-info/SOURCES.txt' 2025-09-08T19:09:37,604 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T19:09:37,608 Source in /tmp/pip-wheel-1_p9beiv/probabilistic2020_dd629627d8aa430ea18e9c2a1223728d has version 1.2.3, which satisfies requirement probabilistic2020==1.2.3 from https://files.pythonhosted.org/packages/d7/58/32b490f92ab7a44a8ea617134ca5666a53e167634fa7c82d445a861577d1/probabilistic2020-1.2.3.tar.gz 2025-09-08T19:09:37,609 Removed probabilistic2020==1.2.3 from https://files.pythonhosted.org/packages/d7/58/32b490f92ab7a44a8ea617134ca5666a53e167634fa7c82d445a861577d1/probabilistic2020-1.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-4d1mzx5f' 2025-09-08T19:09:37,613 Created temporary directory: /tmp/pip-unpack-0onn095f 2025-09-08T19:09:37,613 Created temporary directory: /tmp/pip-unpack-mij9pph9 2025-09-08T19:09:37,613 Building wheels for collected packages: probabilistic2020 2025-09-08T19:09:37,615 Created temporary directory: /tmp/pip-wheel-8d6rouc1 2025-09-08T19:09:37,615 DEPRECATION: Building 'probabilistic2020' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'probabilistic2020'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T19:09:37,617 Building wheel for probabilistic2020 (setup.py): started 2025-09-08T19:09:37,617 Destination directory: /tmp/pip-wheel-8d6rouc1 2025-09-08T19:09:37,618 Running command python setup.py bdist_wheel 2025-09-08T19:09:38,916 running bdist_wheel 2025-09-08T19:09:39,289 running build 2025-09-08T19:09:39,289 running build_py 2025-09-08T19:09:39,370 creating build/lib.linux-armv7l-cpython-313/prob2020 2025-09-08T19:09:39,370 copying prob2020/__init__.py -> build/lib.linux-armv7l-cpython-313/prob2020 2025-09-08T19:09:39,371 creating build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,372 copying prob2020/python/gene_sequence.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,372 copying prob2020/python/mymath.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,373 copying prob2020/python/utils.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,373 copying prob2020/python/annotate.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,374 copying prob2020/python/amino_acid.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,374 copying prob2020/python/p_value.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,375 copying prob2020/python/sequence_context.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,376 copying prob2020/python/mutation_context.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,376 copying prob2020/python/indel.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,377 copying prob2020/python/permutation.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,377 copying prob2020/python/__init__.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,378 copying prob2020/python/count_frameshifts.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,378 copying prob2020/python/process_result.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,379 copying prob2020/python/scores.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,379 copying prob2020/python/bed_line.py -> build/lib.linux-armv7l-cpython-313/prob2020/python 2025-09-08T19:09:39,380 creating build/lib.linux-armv7l-cpython-313/prob2020/cython 2025-09-08T19:09:39,380 copying prob2020/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/prob2020/cython 2025-09-08T19:09:39,381 creating build/lib.linux-armv7l-cpython-313/prob2020/cpp 2025-09-08T19:09:39,381 copying prob2020/cpp/__init__.py -> build/lib.linux-armv7l-cpython-313/prob2020/cpp 2025-09-08T19:09:39,382 creating build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,382 copying prob2020/console/extract_gene_seq.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,383 copying prob2020/console/simulate_non_silent_ratio.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,384 copying prob2020/console/probabilistic2020.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,384 copying prob2020/console/annotate.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,385 copying prob2020/console/__init__.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,385 copying prob2020/console/count_frameshifts.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,386 copying prob2020/console/randomization_test.py -> build/lib.linux-armv7l-cpython-313/prob2020/console 2025-09-08T19:09:39,389 running build_ext 2025-09-08T19:09:39,736 building 'prob2020.cython.cutils' extension 2025-09-08T19:09:39,736 creating build/temp.linux-armv7l-cpython-313/prob2020/cython 2025-09-08T19:09:39,737 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iprob2020/cpp/ -Iprob2020/cython/ -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c prob2020/cython/cutils.cpp -o build/temp.linux-armv7l-cpython-313/prob2020/cython/cutils.o 2025-09-08T19:09:40,104 prob2020/cython/cutils.cpp:219:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T19:09:40,104 219 | #include "longintrepr.h" 2025-09-08T19:09:40,104 | ^~~~~~~~~~~~~~~ 2025-09-08T19:09:40,104 compilation terminated. 2025-09-08T19:09:40,110 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2025-09-08T19:09:40,283 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T19:09:40,295 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T19:09:40,295 exec(compile('"'"''"'"''"'"' 2025-09-08T19:09:40,295 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:09:40,295 # 2025-09-08T19:09:40,295 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T19:09:40,295 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T19:09:40,295 # - It provides a clear error message when setuptools is not installed. 2025-09-08T19:09:40,295 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T19:09:40,295 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T19:09:40,295 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T19:09:40,295 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T19:09:40,295 import os, sys, tokenize, traceback 2025-09-08T19:09:40,295 2025-09-08T19:09:40,295 try: 2025-09-08T19:09:40,295 import setuptools 2025-09-08T19:09:40,295 except ImportError: 2025-09-08T19:09:40,295 print( 2025-09-08T19:09:40,295 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T19:09:40,295 "the build environment with exception:", 2025-09-08T19:09:40,295 file=sys.stderr, 2025-09-08T19:09:40,295 ) 2025-09-08T19:09:40,295 traceback.print_exc() 2025-09-08T19:09:40,295 sys.exit(1) 2025-09-08T19:09:40,295 2025-09-08T19:09:40,295 __file__ = %r 2025-09-08T19:09:40,295 sys.argv[0] = __file__ 2025-09-08T19:09:40,295 2025-09-08T19:09:40,295 if os.path.exists(__file__): 2025-09-08T19:09:40,295 filename = __file__ 2025-09-08T19:09:40,295 with tokenize.open(__file__) as f: 2025-09-08T19:09:40,295 setup_py_code = f.read() 2025-09-08T19:09:40,295 else: 2025-09-08T19:09:40,295 filename = "" 2025-09-08T19:09:40,295 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T19:09:40,295 2025-09-08T19:09:40,295 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:09:40,295 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-1_p9beiv/probabilistic2020_dd629627d8aa430ea18e9c2a1223728d/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-8d6rouc1[/] 2025-09-08T19:09:40,295 [bold magenta]cwd[/]: /tmp/pip-wheel-1_p9beiv/probabilistic2020_dd629627d8aa430ea18e9c2a1223728d/ 2025-09-08T19:09:40,295 Building wheel for probabilistic2020 (setup.py): finished with status 'error' 2025-09-08T19:09:40,296 ERROR: Failed building wheel for probabilistic2020 2025-09-08T19:09:40,296 Running setup.py clean for probabilistic2020 2025-09-08T19:09:40,297 Running command python setup.py clean 2025-09-08T19:09:41,645 running clean 2025-09-08T19:09:41,788 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:09:41,788 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:09:41,789 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T19:09:41,789 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T19:09:41,789 removing 'build' 2025-09-08T19:09:41,925 Failed to build probabilistic2020 2025-09-08T19:09:41,926 ERROR: Failed to build one or more wheels 2025-09-08T19:09:41,927 Exception information: 2025-09-08T19:09:41,927 Traceback (most recent call last): 2025-09-08T19:09:41,927 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T19:09:41,927 status = _inner_run() 2025-09-08T19:09:41,927 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T19:09:41,927 return self.run(options, args) 2025-09-08T19:09:41,927 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T19:09:41,927 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T19:09:41,927 return func(self, options, args) 2025-09-08T19:09:41,927 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T19:09:41,927 raise CommandError("Failed to build one or more wheels") 2025-09-08T19:09:41,927 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T19:09:41,931 Removed build tracker: '/tmp/pip-build-tracker-4d1mzx5f'