2025-09-08T19:17:04,655 Created temporary directory: /tmp/pip-build-tracker-41zie_ux 2025-09-08T19:17:04,656 Initialized build tracking at /tmp/pip-build-tracker-41zie_ux 2025-09-08T19:17:04,656 Created build tracker: /tmp/pip-build-tracker-41zie_ux 2025-09-08T19:17:04,656 Entered build tracker: /tmp/pip-build-tracker-41zie_ux 2025-09-08T19:17:04,656 Created temporary directory: /tmp/pip-wheel-wzb61z47 2025-09-08T19:17:04,660 Created temporary directory: /tmp/pip-ephem-wheel-cache-2qwza4mn 2025-09-08T19:17:04,715 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T19:17:04,717 2 location(s) to search for versions of adaptivepele: 2025-09-08T19:17:04,717 * https://pypi.org/simple/adaptivepele/ 2025-09-08T19:17:04,717 * https://www.piwheels.org/simple/adaptivepele/ 2025-09-08T19:17:04,718 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/ 2025-09-08T19:17:04,718 Getting page https://pypi.org/simple/adaptivepele/ 2025-09-08T19:17:04,719 Found index url https://pypi.org/simple/ 2025-09-08T19:17:04,792 Fetched page https://pypi.org/simple/adaptivepele/ as application/vnd.pypi.simple.v1+json 2025-09-08T19:17:04,794 Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.5.1 2025-09-08T19:17:04,794 Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.5.2 2025-09-08T19:17:04,794 Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6 2025-09-08T19:17:04,794 Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6.2 2025-09-08T19:17:04,795 Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6.3 2025-09-08T19:17:04,795 Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7 2025-09-08T19:17:04,795 Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7.1 2025-09-08T19:17:04,795 Found link https://files.pythonhosted.org/packages/d2/2a/993f92a15fee18f51f48793e865e2626d51c441ba7ec4565480fad4391d6/AdaptivePELE-1.7.4.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7.4 2025-09-08T19:17:04,796 Fetching project page and analyzing links: https://www.piwheels.org/simple/adaptivepele/ 2025-09-08T19:17:04,796 Getting page https://www.piwheels.org/simple/adaptivepele/ 2025-09-08T19:17:04,797 Found index url https://www.piwheels.org/simple/ 2025-09-08T19:17:04,898 Fetched page https://www.piwheels.org/simple/adaptivepele/ as text/html 2025-09-08T19:17:04,906 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp311-cp311-linux_armv6l.whl#sha256=8322937309a7efabf90fbc15d3d59ca9db71870cd9bb872bc4fefc2548447801 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,906 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp311-cp311-linux_armv7l.whl#sha256=8322937309a7efabf90fbc15d3d59ca9db71870cd9bb872bc4fefc2548447801 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,906 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp37-cp37m-linux_armv6l.whl#sha256=92d2fd2578aa02d8403fcd8ad2120883c524e2bce2be63df388ea24ad74eefd4 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,907 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp37-cp37m-linux_armv7l.whl#sha256=92d2fd2578aa02d8403fcd8ad2120883c524e2bce2be63df388ea24ad74eefd4 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,907 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp39-cp39-linux_armv6l.whl#sha256=6b765ee382a855a7704db9039fae9a5d842fcce59a92087f71b40dc636ca1fe8 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,907 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp39-cp39-linux_armv7l.whl#sha256=6b765ee382a855a7704db9039fae9a5d842fcce59a92087f71b40dc636ca1fe8 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,907 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp37-cp37m-linux_armv6l.whl#sha256=3292b60b31353aeff2e1832f504c186c202729cba0948d5ed44a194fab7eb63d (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,907 Skipping link: No binaries permitted for adaptivepele: 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https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp37-cp37m-linux_armv6l.whl#sha256=fc72f5016a0826fbe3b3a251f574c128cfffc1e1080f6ef21d32ae9134214087 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp37-cp37m-linux_armv7l.whl#sha256=fc72f5016a0826fbe3b3a251f574c128cfffc1e1080f6ef21d32ae9134214087 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp35-cp35m-linux_armv6l.whl#sha256=843a4ba6b03c34f08d3926f9c672ffecbe27f2d3a031f4e04cfba5ab92bf081b (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp35-cp35m-linux_armv7l.whl#sha256=843a4ba6b03c34f08d3926f9c672ffecbe27f2d3a031f4e04cfba5ab92bf081b (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp34-cp34m-linux_armv7l.whl#sha256=4f4aaf9237f2698965935feac86131663c03ebcf1f93aec451b35f8ce80d4c09 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp34-cp34m-linux_armv6l.whl#sha256=4f4aaf9237f2698965935feac86131663c03ebcf1f93aec451b35f8ce80d4c09 (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,909 Skipping link: No binaries permitted for adaptivepele: 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https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp35-cp35m-linux_armv7l.whl#sha256=11454cd28dbb1fac72eedb48155487d4e6a36fe5bf4ba70d1df2f81984690f5f (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,911 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp35-cp35m-linux_armv6l.whl#sha256=11454cd28dbb1fac72eedb48155487d4e6a36fe5bf4ba70d1df2f81984690f5f (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,911 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp34-cp34m-linux_armv6l.whl#sha256=ae482fbe798dddf382cbba7468496c022b12752804d218c198b78c1183e5342a (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,912 Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp34-cp34m-linux_armv7l.whl#sha256=ae482fbe798dddf382cbba7468496c022b12752804d218c198b78c1183e5342a (from https://www.piwheels.org/simple/adaptivepele/) 2025-09-08T19:17:04,912 Skipping link: not a file: https://www.piwheels.org/simple/adaptivepele/ 2025-09-08T19:17:04,912 Skipping link: not a file: https://pypi.org/simple/adaptivepele/ 2025-09-08T19:17:04,938 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates 2025-09-08T19:17:04,939 Collecting adaptivepele==1.6.2 2025-09-08T19:17:04,940 Created temporary directory: /tmp/pip-unpack-emwslehe 2025-09-08T19:17:05,111 Downloading AdaptivePELE-1.6.2.tar.gz (4.5 MB) 2025-09-08T19:17:06,618 Added adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-41zie_ux' 2025-09-08T19:17:06,619 Running setup.py (path:/tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166/setup.py) egg_info for package adaptivepele 2025-09-08T19:17:06,620 Created temporary directory: /tmp/pip-pip-egg-info-dq4d7gpq 2025-09-08T19:17:06,620 Preparing metadata (setup.py): started 2025-09-08T19:17:06,621 Running command python setup.py egg_info 2025-09-08T19:17:07,714 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:17:07,918 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:17:07,918 !! 2025-09-08T19:17:07,918 ******************************************************************************** 2025-09-08T19:17:07,919 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:17:07,919 License :: OSI Approved :: MIT License 2025-09-08T19:17:07,919 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:17:07,919 ******************************************************************************** 2025-09-08T19:17:07,919 !! 2025-09-08T19:17:07,919 self._finalize_license_expression() 2025-09-08T19:17:07,991 running egg_info 2025-09-08T19:17:08,064 creating /tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info 2025-09-08T19:17:08,064 writing /tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/PKG-INFO 2025-09-08T19:17:08,065 writing dependency_links to /tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/dependency_links.txt 2025-09-08T19:17:08,066 writing requirements to /tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/requires.txt 2025-09-08T19:17:08,066 writing top-level names to /tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/top_level.txt 2025-09-08T19:17:08,067 writing manifest file '/tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/SOURCES.txt' 2025-09-08T19:17:08,298 reading manifest file '/tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/SOURCES.txt' 2025-09-08T19:17:08,299 reading manifest template 'MANIFEST.in' 2025-09-08T19:17:08,309 writing manifest file '/tmp/pip-pip-egg-info-dq4d7gpq/AdaptivePELE.egg-info/SOURCES.txt' 2025-09-08T19:17:08,448 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T19:17:08,453 Source in /tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166 has version 1.6.2, which satisfies requirement adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz 2025-09-08T19:17:08,454 Removed adaptivepele==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-41zie_ux' 2025-09-08T19:17:08,458 Created temporary directory: /tmp/pip-unpack-v72qbxyr 2025-09-08T19:17:08,458 Created temporary directory: /tmp/pip-unpack-2u6jx_w2 2025-09-08T19:17:08,458 Building wheels for collected packages: adaptivepele 2025-09-08T19:17:08,460 Created temporary directory: /tmp/pip-wheel-i81fxe90 2025-09-08T19:17:08,460 DEPRECATION: Building 'adaptivepele' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'adaptivepele'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T19:17:08,461 Building wheel for adaptivepele (setup.py): started 2025-09-08T19:17:08,462 Destination directory: /tmp/pip-wheel-i81fxe90 2025-09-08T19:17:08,462 Running command python setup.py bdist_wheel 2025-09-08T19:17:09,539 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:17:09,742 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:17:09,742 !! 2025-09-08T19:17:09,742 ******************************************************************************** 2025-09-08T19:17:09,742 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:17:09,742 License :: OSI Approved :: MIT License 2025-09-08T19:17:09,743 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:17:09,743 ******************************************************************************** 2025-09-08T19:17:09,743 !! 2025-09-08T19:17:09,743 self._finalize_license_expression() 2025-09-08T19:17:09,743 running bdist_wheel 2025-09-08T19:17:10,031 running build 2025-09-08T19:17:10,031 running build_py 2025-09-08T19:17:10,107 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,107 copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,108 copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,108 copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,109 copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,110 copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE 2025-09-08T19:17:10,110 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator 2025-09-08T19:17:10,111 copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator 2025-09-08T19:17:10,111 copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator 2025-09-08T19:17:10,112 copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator 2025-09-08T19:17:10,113 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,113 copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,113 copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,114 copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,114 copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,115 copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,115 copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities 2025-09-08T19:17:10,116 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,117 copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,117 copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,118 copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,118 copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,119 copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,119 copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,120 copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,120 copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,121 copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,122 copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests 2025-09-08T19:17:10,122 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,123 copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,123 copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,124 copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,124 copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,125 copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning 2025-09-08T19:17:10,126 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation 2025-09-08T19:17:10,126 copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation 2025-09-08T19:17:10,127 copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation 2025-09-08T19:17:10,127 copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation 2025-09-08T19:17:10,128 copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation 2025-09-08T19:17:10,129 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,129 copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,130 copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,130 copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,131 copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,131 copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,132 copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,132 copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,133 copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,134 copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,134 copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,135 copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,135 copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,136 copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,136 copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,137 copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,137 copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,138 copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies 2025-09-08T19:17:10,138 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants 2025-09-08T19:17:10,139 copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants 2025-09-08T19:17:10,139 copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants 2025-09-08T19:17:10,140 copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants 2025-09-08T19:17:10,140 copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants 2025-09-08T19:17:10,141 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,141 copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,142 copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,142 copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,143 copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,144 copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering 2025-09-08T19:17:10,145 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset 2025-09-08T19:17:10,145 copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset 2025-09-08T19:17:10,145 copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset 2025-09-08T19:17:10,147 creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,147 copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,148 copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,148 copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,149 copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,149 copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,150 copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,150 copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,151 copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,151 copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,152 copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,152 copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,153 copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,154 copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,154 copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,155 copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,155 copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,156 copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,156 copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,157 copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,157 copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,158 copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,158 copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,159 copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,159 copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,160 copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,160 copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,161 copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,161 copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,162 copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,162 copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,163 copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,163 copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,164 copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,164 copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,165 copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,165 copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,166 copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,167 copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,167 copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,168 copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,168 copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis 2025-09-08T19:17:10,177 running build_ext 2025-09-08T19:17:10,699 Compiling AdaptivePELE/atomset/atomset.pyx because it changed. 2025-09-08T19:17:10,699 [1/1] Cythonizing AdaptivePELE/atomset/atomset.pyx 2025-09-08T19:17:11,653 Error compiling Cython file: 2025-09-08T19:17:11,653 ------------------------------------------------------------ 2025-09-08T19:17:11,653 ... 2025-09-08T19:17:11,653 def printAtom(self): 2025-09-08T19:17:11,654 """ 2025-09-08T19:17:11,654 Print Atom information 2025-09-08T19:17:11,654 """ 2025-09-08T19:17:11,654 print self.atomSerial, self.name, self.resname, self.resChain, self.resnum, self.x, self.y, self.z, self.type, self.mass 2025-09-08T19:17:11,654 ^ 2025-09-08T19:17:11,654 ------------------------------------------------------------ 2025-09-08T19:17:11,654 AdaptivePELE/atomset/atomset.pyx:349:14: Syntax error in simple statement list 2025-09-08T19:17:11,666 Traceback (most recent call last): 2025-09-08T19:17:11,674 File "", line 2, in 2025-09-08T19:17:11,675 exec(compile(''' 2025-09-08T19:17:11,675 ~~~~^^^^^^^^^^^^ 2025-09-08T19:17:11,675 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:17:11,675 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:17:11,675 ...<32 lines>... 2025-09-08T19:17:11,675 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:17:11,675 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:17:11,675 ''' % ('/tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166/setup.py',), "", "exec")) 2025-09-08T19:17:11,675 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:17:11,676 File "", line 35, in 2025-09-08T19:17:11,676 File "/tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166/setup.py", line 53, in 2025-09-08T19:17:11,676 setup( 2025-09-08T19:17:11,676 ~~~~~^ 2025-09-08T19:17:11,676 name="AdaptivePELE", 2025-09-08T19:17:11,676 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:17:11,676 ...<25 lines>... 2025-09-08T19:17:11,677 ) 2025-09-08T19:17:11,677 ^ 2025-09-08T19:17:11,677 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T19:17:11,677 return distutils.core.setup(**attrs) 2025-09-08T19:17:11,677 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,677 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T19:17:11,677 return run_commands(dist) 2025-09-08T19:17:11,677 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T19:17:11,678 dist.run_commands() 2025-09-08T19:17:11,678 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:17:11,678 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T19:17:11,678 self.run_command(cmd) 2025-09-08T19:17:11,678 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:17:11,678 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:17:11,678 super().run_command(command) 2025-09-08T19:17:11,678 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,678 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:17:11,679 cmd_obj.run() 2025-09-08T19:17:11,679 ~~~~~~~~~~~^^ 2025-09-08T19:17:11,679 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T19:17:11,679 self.run_command("build") 2025-09-08T19:17:11,679 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,679 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:17:11,679 self.distribution.run_command(command) 2025-09-08T19:17:11,679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,679 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:17:11,680 super().run_command(command) 2025-09-08T19:17:11,680 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,680 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:17:11,680 cmd_obj.run() 2025-09-08T19:17:11,680 ~~~~~~~~~~~^^ 2025-09-08T19:17:11,680 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T19:17:11,680 self.run_command(cmd_name) 2025-09-08T19:17:11,680 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T19:17:11,681 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:17:11,681 self.distribution.run_command(command) 2025-09-08T19:17:11,681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,681 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:17:11,681 super().run_command(command) 2025-09-08T19:17:11,681 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:17:11,681 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:17:11,681 cmd_obj.run() 2025-09-08T19:17:11,682 ~~~~~~~~~~~^^ 2025-09-08T19:17:11,682 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T19:17:11,682 self.build_extensions() 2025-09-08T19:17:11,682 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:17:11,682 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T19:17:11,682 self._build_extensions_serial() 2025-09-08T19:17:11,682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:17:11,682 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T19:17:11,682 self.build_extension(ext) 2025-09-08T19:17:11,683 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:17:11,683 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T19:17:11,683 new_ext = cythonize( 2025-09-08T19:17:11,683 ~~~~~~~~~^ 2025-09-08T19:17:11,683 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T19:17:11,683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:17:11,683 )[0] 2025-09-08T19:17:11,683 ^ 2025-09-08T19:17:11,683 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T19:17:11,684 cythonize_one(*args) 2025-09-08T19:17:11,684 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T19:17:11,684 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T19:17:11,684 raise CompileError(None, pyx_file) 2025-09-08T19:17:11,684 Cython.Compiler.Errors.CompileError: AdaptivePELE/atomset/atomset.pyx 2025-09-08T19:17:11,954 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T19:17:11,967 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T19:17:11,967 exec(compile('"'"''"'"''"'"' 2025-09-08T19:17:11,967 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:17:11,967 # 2025-09-08T19:17:11,967 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T19:17:11,967 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T19:17:11,967 # - It provides a clear error message when setuptools is not installed. 2025-09-08T19:17:11,967 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T19:17:11,967 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T19:17:11,967 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T19:17:11,967 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T19:17:11,967 import os, sys, tokenize, traceback 2025-09-08T19:17:11,967 2025-09-08T19:17:11,967 try: 2025-09-08T19:17:11,967 import setuptools 2025-09-08T19:17:11,967 except ImportError: 2025-09-08T19:17:11,967 print( 2025-09-08T19:17:11,967 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T19:17:11,967 "the build environment with exception:", 2025-09-08T19:17:11,967 file=sys.stderr, 2025-09-08T19:17:11,967 ) 2025-09-08T19:17:11,967 traceback.print_exc() 2025-09-08T19:17:11,967 sys.exit(1) 2025-09-08T19:17:11,967 2025-09-08T19:17:11,967 __file__ = %r 2025-09-08T19:17:11,967 sys.argv[0] = __file__ 2025-09-08T19:17:11,967 2025-09-08T19:17:11,967 if os.path.exists(__file__): 2025-09-08T19:17:11,967 filename = __file__ 2025-09-08T19:17:11,967 with tokenize.open(__file__) as f: 2025-09-08T19:17:11,967 setup_py_code = f.read() 2025-09-08T19:17:11,967 else: 2025-09-08T19:17:11,967 filename = "" 2025-09-08T19:17:11,967 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T19:17:11,967 2025-09-08T19:17:11,967 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:17:11,967 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-i81fxe90[/] 2025-09-08T19:17:11,967 [bold magenta]cwd[/]: /tmp/pip-wheel-wzb61z47/adaptivepele_6dac27b92ae14c4185ed5d58f1b36166/ 2025-09-08T19:17:11,967 Building wheel for adaptivepele (setup.py): finished with status 'error' 2025-09-08T19:17:11,968 ERROR: Failed building wheel for adaptivepele 2025-09-08T19:17:11,969 Running setup.py clean for adaptivepele 2025-09-08T19:17:11,970 Running command python setup.py clean 2025-09-08T19:17:13,060 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:17:13,266 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:17:13,266 !! 2025-09-08T19:17:13,266 ******************************************************************************** 2025-09-08T19:17:13,266 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:17:13,267 License :: OSI Approved :: MIT License 2025-09-08T19:17:13,267 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:17:13,267 ******************************************************************************** 2025-09-08T19:17:13,267 !! 2025-09-08T19:17:13,267 self._finalize_license_expression() 2025-09-08T19:17:13,341 running clean 2025-09-08T19:17:13,484 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:17:13,487 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T19:17:13,488 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T19:17:13,488 removing 'build' 2025-09-08T19:17:13,627 Failed to build adaptivepele 2025-09-08T19:17:13,627 ERROR: Failed to build one or more wheels 2025-09-08T19:17:13,628 Exception information: 2025-09-08T19:17:13,628 Traceback (most recent call last): 2025-09-08T19:17:13,628 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T19:17:13,628 status = _inner_run() 2025-09-08T19:17:13,628 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T19:17:13,628 return self.run(options, args) 2025-09-08T19:17:13,628 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T19:17:13,628 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T19:17:13,628 return func(self, options, args) 2025-09-08T19:17:13,628 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T19:17:13,628 raise CommandError("Failed to build one or more wheels") 2025-09-08T19:17:13,628 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T19:17:13,633 Removed build tracker: '/tmp/pip-build-tracker-41zie_ux'