2025-09-08T19:39:06,898 Created temporary directory: /tmp/pip-build-tracker-zodm3qk1 2025-09-08T19:39:06,899 Initialized build tracking at /tmp/pip-build-tracker-zodm3qk1 2025-09-08T19:39:06,899 Created build tracker: /tmp/pip-build-tracker-zodm3qk1 2025-09-08T19:39:06,899 Entered build tracker: /tmp/pip-build-tracker-zodm3qk1 2025-09-08T19:39:06,900 Created temporary directory: /tmp/pip-wheel-hqut1h1x 2025-09-08T19:39:06,903 Created temporary directory: /tmp/pip-ephem-wheel-cache-nrvebofa 2025-09-08T19:39:06,958 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T19:39:06,960 2 location(s) to search for versions of libsonata: 2025-09-08T19:39:06,960 * https://pypi.org/simple/libsonata/ 2025-09-08T19:39:06,960 * https://www.piwheels.org/simple/libsonata/ 2025-09-08T19:39:06,961 Fetching project page and analyzing links: https://pypi.org/simple/libsonata/ 2025-09-08T19:39:06,961 Getting page https://pypi.org/simple/libsonata/ 2025-09-08T19:39:06,962 Found index url https://pypi.org/simple/ 2025-09-08T19:39:07,054 Fetched page https://pypi.org/simple/libsonata/ as application/vnd.pypi.simple.v1+json 2025-09-08T19:39:07,109 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/cd/67/aa4bcce757109b4907ef6b11a376b82f235f4edcdb14ab1cd2fa9991b90b/libsonata-0.0.1-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,109 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/4b/ca/553800b92784776ebe64a5e41ddb0c08501548a3438ac16c1959c513ba3b/libsonata-0.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,110 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ad/d7/05633e1f092a2e4e63535b12b4552fee3e1af52a9e59491b5ba85c7749a0/libsonata-0.0.1-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,110 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/f5/3a/79ba20d58bcf93f32f07fb453a33f9e0073380f6232d6f34311c30a41378/libsonata-0.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,110 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/f7/b1/b4950543f7d05072f41847d14cc5f78dd776762f58db172873c0663baab9/libsonata-0.0.1-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,110 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/65/2d/0abf53b76eb2c0a72f0c2ef76e4f4f39d4eff50a06615e40f5478feeb7b7/libsonata-0.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,110 Skipping link: No binaries permitted for libsonata: 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link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/54/9d/2efdb66e1830144e8d182173975ccb16e680db2665c41a25f8a5a6f2f485/libsonata-0.0.2-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,111 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/35/2a6035c56587c469f566f58934e9862e84f7f2b57abf29addfef0cd6b28b/libsonata-0.0.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,111 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/be/54/2101e715781231ac29891c966d8f264bc28a9adbefe3ee2a3722cb611279/libsonata-0.0.2-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,112 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,114 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/08/a0/baa1e4ee480d7e3b1f548ff6062a2a6bb2e7e62ea0872e2cc514f6da4f52/libsonata-0.0.3-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,114 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ef/6d/2df3b814ee1133587e954aa5e25bf80294c75b1250d5f2db68ab15c3313e/libsonata-0.0.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,115 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b1/a8/0018356cee12f4bce0bf9e6a89da00c7207b34ba0278206e5b2d2d3988ab/libsonata-0.1.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,115 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,115 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/72/e1/72dc9ac956101522c4f14ac4996214b032967c81d5635acf7ed7a017af30/libsonata-0.1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,115 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/d0/58/f74c17d6f0fef9444fbe68958159b4810745052fdca33c0a9decc5e94593/libsonata-0.1.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,116 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3e/82/f3da097e0619d333731b2c6adb4e955eede0aabdb08a93bfc3911bbdbc67/libsonata-0.1.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,116 Found link 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https://files.pythonhosted.org/packages/04/0a/1c456a113baa51867575c087d0bf9d81aba067619cba25ce8d30e244617e/libsonata-0.1.1-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,117 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/af/3e/43a56eb604c0f2f0cd885abfb636903e48fe36f4bbc30968e82d12521ac2/libsonata-0.1.1-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,117 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/98/59/3863aa3e0de1d5b8a5900ae51fb8a98bcadb3d8e05b40666b794e33ea344/libsonata-0.1.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2025-09-08T19:39:07,117 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/eb/ef/1461f6f78b189a580aaa757a4d9c1b313a9273c1e414c5d9890945b714bb/libsonata-0.1.31-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2025-09-08T19:39:07,177 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/95/68/af11573fefae24a46843bc1774c512f541bd8d9eba4c59c7d495da6d00dd/libsonata-0.1.31-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2025-09-08T19:39:07,177 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/71/d5/0f12c2e4daaeb6e95d351b759fa639664316e0be2c4562422f94ad909f17/libsonata-0.1.31-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2025-09-08T19:39:07,178 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/50/04/a525768d1a482d4fd847282a9b2f32f7d8d9ff9c3964b64022e76d6cd0e2/libsonata-0.1.31-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2025-09-08T19:39:07,178 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/c6/f3/382c440051b8c2c83c06698d3ef8c14beaf95b4248673aec6bc108e34a09/libsonata-0.1.31-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2025-09-08T19:39:07,178 Found link https://files.pythonhosted.org/packages/7e/f1/e71c5a9088c5c7c080422f1b6991e91ec072874f546aef098db55af157cc/libsonata-0.1.31.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9), version: 0.1.31 2025-09-08T19:39:07,178 Fetching project page and analyzing links: https://www.piwheels.org/simple/libsonata/ 2025-09-08T19:39:07,179 Getting page 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https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp34-cp34m-linux_armv6l.whl#sha256=eb0191c0c85eb15262865a055d297c79be1c9fc86d68f2cd9b0e05fb9b909b0c (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,338 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp34-cp34m-linux_armv7l.whl#sha256=eb0191c0c85eb15262865a055d297c79be1c9fc86d68f2cd9b0e05fb9b909b0c (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,338 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp37-cp37m-linux_armv7l.whl#sha256=23b7d8f937f3d7722ea66ea82193e096565c3093ae2146b2438fa3d9842ea2cb (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,338 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp37-cp37m-linux_armv6l.whl#sha256=23b7d8f937f3d7722ea66ea82193e096565c3093ae2146b2438fa3d9842ea2cb (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,338 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp39-cp39-linux_armv6l.whl#sha256=9314bbe6f274b6e2643b6188fe9c4fd1087093f3a6f4acc9622250afa07f250e (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.4.dev7-cp39-cp39-linux_armv7l.whl#sha256=9314bbe6f274b6e2643b6188fe9c4fd1087093f3a6f4acc9622250afa07f250e (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=6843c79b0b382fe18b24af2b3ae43ce303d5ef0388b2c0583382604d5ce8b81a (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=6843c79b0b382fe18b24af2b3ae43ce303d5ef0388b2c0583382604d5ce8b81a (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp34-cp34m-linux_armv6l.whl#sha256=737bf46855f9d666739d5d7be3f4f596cd11367c84d89a65cbb02437e315a667 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp34-cp34m-linux_armv7l.whl#sha256=737bf46855f9d666739d5d7be3f4f596cd11367c84d89a65cbb02437e315a667 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp35-cp35m-linux_armv6l.whl#sha256=95faa6c7caaf34fc9fd2e0de722715b7d06b371f553b62bf92443e7d6541aac7 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,339 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp35-cp35m-linux_armv7l.whl#sha256=95faa6c7caaf34fc9fd2e0de722715b7d06b371f553b62bf92443e7d6541aac7 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp37-cp37m-linux_armv6l.whl#sha256=6bb8c369f4f539bdbc5e096d7ad56ef42ca4a08eeff4274a462f6d14888899c3 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=6bb8c369f4f539bdbc5e096d7ad56ef42ca4a08eeff4274a462f6d14888899c3 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=203af13c796d6096151043c6656f50f8a26c9b5c634c4085c7b7ced33d0f6704 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,340 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,341 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,341 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,341 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2025-09-08T19:39:07,341 Skipping link: not a file: https://www.piwheels.org/simple/libsonata/ 2025-09-08T19:39:07,341 Skipping link: not a file: https://pypi.org/simple/libsonata/ 2025-09-08T19:39:07,366 Given no hashes to check 1 links for project 'libsonata': discarding no candidates 2025-09-08T19:39:07,367 Collecting libsonata==0.1.0 2025-09-08T19:39:07,369 Created temporary directory: /tmp/pip-unpack-eouzcgzt 2025-09-08T19:39:07,515 Downloading libsonata-0.1.0.tar.gz (382 kB) 2025-09-08T19:39:07,681 Added libsonata==0.1.0 from https://files.pythonhosted.org/packages/04/45/8cab82e154b64a54df0e89682e5e01522028f293f520a052a69a2353f6de/libsonata-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-zodm3qk1' 2025-09-08T19:39:07,682 Running setup.py (path:/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py) egg_info for package libsonata 2025-09-08T19:39:07,682 Created temporary directory: /tmp/pip-pip-egg-info-zcpm5f_o 2025-09-08T19:39:07,682 Preparing metadata (setup.py): started 2025-09-08T19:39:07,683 Running command python setup.py egg_info 2025-09-08T19:39:08,378 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py:12: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T19:39:08,378 !! 2025-09-08T19:39:08,379 ******************************************************************************** 2025-09-08T19:39:08,379 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T19:39:08,379 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T19:39:08,379 calls to avoid build errors in the future. 2025-09-08T19:39:08,379 ******************************************************************************** 2025-09-08T19:39:08,379 !! 2025-09-08T19:39:08,379 from setuptools.command.test import test 2025-09-08T19:39:08,559 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T19:39:08,560 !! 2025-09-08T19:39:08,560 ******************************************************************************** 2025-09-08T19:39:08,560 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T19:39:08,560 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T19:39:08,560 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T19:39:08,560 or your builds will no longer be supported. 2025-09-08T19:39:08,560 ******************************************************************************** 2025-09-08T19:39:08,561 !! 2025-09-08T19:39:08,561 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T19:39:11,889 running egg_info 2025-09-08T19:39:11,966 creating /tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info 2025-09-08T19:39:11,967 writing /tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/PKG-INFO 2025-09-08T19:39:11,968 writing dependency_links to /tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/dependency_links.txt 2025-09-08T19:39:11,968 writing requirements to /tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/requires.txt 2025-09-08T19:39:11,969 writing top-level names to /tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/top_level.txt 2025-09-08T19:39:11,969 writing manifest file '/tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/SOURCES.txt' 2025-09-08T19:39:12,292 listing git files failed - pretending there aren't any 2025-09-08T19:39:12,304 reading manifest file '/tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/SOURCES.txt' 2025-09-08T19:39:12,305 reading manifest template 'MANIFEST.in' 2025-09-08T19:39:12,307 warning: no files found matching 'VERSION' 2025-09-08T19:39:12,317 adding license file 'LICENSE.txt' 2025-09-08T19:39:12,322 writing manifest file '/tmp/pip-pip-egg-info-zcpm5f_o/libsonata.egg-info/SOURCES.txt' 2025-09-08T19:39:12,442 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T19:39:12,447 Source in /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f has version 0.1.0, which satisfies requirement libsonata==0.1.0 from https://files.pythonhosted.org/packages/04/45/8cab82e154b64a54df0e89682e5e01522028f293f520a052a69a2353f6de/libsonata-0.1.0.tar.gz 2025-09-08T19:39:12,447 Removed libsonata==0.1.0 from https://files.pythonhosted.org/packages/04/45/8cab82e154b64a54df0e89682e5e01522028f293f520a052a69a2353f6de/libsonata-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-zodm3qk1' 2025-09-08T19:39:12,450 Created temporary directory: /tmp/pip-unpack-lsu46aqt 2025-09-08T19:39:12,450 Created temporary directory: /tmp/pip-unpack-hp01bbsp 2025-09-08T19:39:12,451 Building wheels for collected packages: libsonata 2025-09-08T19:39:12,452 Created temporary directory: /tmp/pip-wheel-fslbtm95 2025-09-08T19:39:12,452 DEPRECATION: Building 'libsonata' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'libsonata'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T19:39:12,454 Building wheel for libsonata (setup.py): started 2025-09-08T19:39:12,454 Destination directory: /tmp/pip-wheel-fslbtm95 2025-09-08T19:39:12,454 Running command python setup.py bdist_wheel 2025-09-08T19:39:13,160 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py:12: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T19:39:13,160 !! 2025-09-08T19:39:13,161 ******************************************************************************** 2025-09-08T19:39:13,161 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T19:39:13,161 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T19:39:13,161 calls to avoid build errors in the future. 2025-09-08T19:39:13,161 ******************************************************************************** 2025-09-08T19:39:13,161 !! 2025-09-08T19:39:13,161 from setuptools.command.test import test 2025-09-08T19:39:13,281 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T19:39:13,281 !! 2025-09-08T19:39:13,281 ******************************************************************************** 2025-09-08T19:39:13,281 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T19:39:13,281 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T19:39:13,282 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T19:39:13,282 or your builds will no longer be supported. 2025-09-08T19:39:13,282 ******************************************************************************** 2025-09-08T19:39:13,282 !! 2025-09-08T19:39:13,282 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T19:39:14,145 running bdist_wheel 2025-09-08T19:39:14,456 running build 2025-09-08T19:39:14,456 running build_ext 2025-09-08T19:39:14,545 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T19:39:14,545 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T19:39:14,545 CMake. 2025-09-08T19:39:14,546 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T19:39:14,546 to tell CMake that the project requires at least but has been updated 2025-09-08T19:39:14,546 to work with policies introduced by or earlier. 2025-09-08T19:39:14,546 CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): 2025-09-08T19:39:14,547 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T19:39:14,547 CMake. 2025-09-08T19:39:14,547 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T19:39:14,547 to tell CMake that the project requires at least but has been updated 2025-09-08T19:39:14,547 to work with policies introduced by or earlier. 2025-09-08T19:39:14,548 CMake Warning (dev) at CMakeLists.txt:5 (find_package): 2025-09-08T19:39:14,548 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T19:39:14,548 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T19:39:14,548 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T19:39:14,549 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T19:39:14,618 -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5") 2025-09-08T19:39:16,691 -- The C compiler identification is GNU 14.2.0 2025-09-08T19:39:17,002 -- The CXX compiler identification is GNU 14.2.0 2025-09-08T19:39:17,042 -- Detecting C compiler ABI info 2025-09-08T19:39:17,497 -- Detecting C compiler ABI info - done 2025-09-08T19:39:17,567 -- Check for working C compiler: /usr/bin/cc - skipped 2025-09-08T19:39:17,569 -- Detecting C compile features 2025-09-08T19:39:17,571 -- Detecting C compile features - done 2025-09-08T19:39:17,641 -- Detecting CXX compiler ABI info 2025-09-08T19:39:18,131 -- Detecting CXX compiler ABI info - done 2025-09-08T19:39:18,212 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-09-08T19:39:18,214 -- Detecting CXX compile features 2025-09-08T19:39:18,218 -- Detecting CXX compile features - done 2025-09-08T19:39:19,666 -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.14.5") 2025-09-08T19:39:19,670 CMake Deprecation Warning at extlib/fmt/CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T19:39:19,671 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T19:39:19,671 CMake. 2025-09-08T19:39:19,671 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T19:39:19,671 to tell CMake that the project requires at least but has been updated 2025-09-08T19:39:19,671 to work with policies introduced by or earlier. 2025-09-08T19:39:19,674 -- Version: 5.2.1 2025-09-08T19:39:19,674 -- Build type: 2025-09-08T19:39:19,681 -- CXX_STANDARD: 11 2025-09-08T19:39:19,685 -- Performing Test has_std_11_flag 2025-09-08T19:39:20,175 -- Performing Test has_std_11_flag - Success 2025-09-08T19:39:20,180 -- Performing Test has_std_0x_flag 2025-09-08T19:39:20,674 -- Performing Test has_std_0x_flag - Success 2025-09-08T19:39:20,675 -- Performing Test SUPPORTS_VARIADIC_TEMPLATES 2025-09-08T19:39:21,180 -- Performing Test SUPPORTS_VARIADIC_TEMPLATES - Success 2025-09-08T19:39:21,181 -- Performing Test SUPPORTS_INITIALIZER_LIST 2025-09-08T19:39:21,707 -- Performing Test SUPPORTS_INITIALIZER_LIST - Success 2025-09-08T19:39:21,708 -- Performing Test SUPPORTS_ENUM_BASE 2025-09-08T19:39:22,230 -- Performing Test SUPPORTS_ENUM_BASE - Success 2025-09-08T19:39:22,231 -- Performing Test SUPPORTS_TYPE_TRAITS 2025-09-08T19:39:22,794 -- Performing Test SUPPORTS_TYPE_TRAITS - Success 2025-09-08T19:39:22,795 -- Performing Test SUPPORTS_USER_DEFINED_LITERALS 2025-09-08T19:39:23,295 -- Performing Test SUPPORTS_USER_DEFINED_LITERALS - Success 2025-09-08T19:39:23,298 -- Looking for open 2025-09-08T19:39:23,767 -- Looking for open - found 2025-09-08T19:39:23,779 CMake Deprecation Warning at python/pybind11/CMakeLists.txt:8 (cmake_minimum_required): 2025-09-08T19:39:23,779 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T19:39:23,779 CMake. 2025-09-08T19:39:23,779 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T19:39:23,780 to tell CMake that the project requires at least but has been updated 2025-09-08T19:39:23,780 to work with policies introduced by or earlier. 2025-09-08T19:39:23,782 CMake Deprecation Warning at python/pybind11/tools/pybind11Tools.cmake:8 (cmake_minimum_required): 2025-09-08T19:39:23,782 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T19:39:23,782 CMake. 2025-09-08T19:39:23,783 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T19:39:23,783 to tell CMake that the project requires at least but has been updated 2025-09-08T19:39:23,783 to work with policies introduced by or earlier. 2025-09-08T19:39:23,783 Call Stack (most recent call first): 2025-09-08T19:39:23,783 python/pybind11/CMakeLists.txt:33 (include) 2025-09-08T19:39:23,785 CMake Warning (dev) at python/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package): 2025-09-08T19:39:23,785 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T19:39:23,786 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T19:39:23,786 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T19:39:23,786 Call Stack (most recent call first): 2025-09-08T19:39:23,786 python/pybind11/tools/pybind11Tools.cmake:16 (find_package) 2025-09-08T19:39:23,786 python/pybind11/CMakeLists.txt:33 (include) 2025-09-08T19:39:23,786 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T19:39:24,500 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so 2025-09-08T19:39:24,519 -- pybind11 v2.3.dev0 2025-09-08T19:39:24,525 -- Performing Test HAS_FLTO 2025-09-08T19:39:25,192 -- Performing Test HAS_FLTO - Success 2025-09-08T19:39:25,192 -- LTO enabled 2025-09-08T19:39:25,195 -- Configuring done (10.7s) 2025-09-08T19:39:25,275 -- Generating done (0.1s) 2025-09-08T19:39:25,276 -- Build files have been written to: /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/build/temp.linux-armv7l-cpython-313 2025-09-08T19:39:25,625 [ 10%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o 2025-09-08T19:39:25,627 [ 20%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o 2025-09-08T19:39:25,650 [ 30%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o 2025-09-08T19:39:25,657 [ 40%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o 2025-09-08T19:39:25,680 [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o 2025-09-08T19:39:25,686 [ 60%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o 2025-09-08T19:39:25,704 [ 70%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o 2025-09-08T19:39:26,478 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:16, 2025-09-08T19:39:26,478 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/nodes.cpp:10: 2025-09-08T19:39:26,479 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/fmt/include/fmt/format.h:440:8: warning: identifier ‘char8_t’ is a keyword in C++20 [-Wc++20-compat] 2025-09-08T19:39:26,479 440 | struct char8_t { 2025-09-08T19:39:26,479 | ^~~~~~~ 2025-09-08T19:39:26,570 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:16, 2025-09-08T19:39:26,570 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:10: 2025-09-08T19:39:26,571 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/fmt/include/fmt/format.h:440:8: warning: identifier ‘char8_t’ is a keyword in C++20 [-Wc++20-compat] 2025-09-08T19:39:26,571 440 | struct char8_t { 2025-09-08T19:39:26,571 | ^~~~~~~ 2025-09-08T19:39:26,651 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:16, 2025-09-08T19:39:26,652 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:10: 2025-09-08T19:39:26,652 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/fmt/include/fmt/format.h:440:8: warning: identifier ‘char8_t’ is a keyword in C++20 [-Wc++20-compat] 2025-09-08T19:39:26,652 440 | struct char8_t { 2025-09-08T19:39:26,652 | ^~~~~~~ 2025-09-08T19:39:29,304 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp: In function ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, bbp::sonata::NodeID)’: 2025-09-08T19:39:29,304 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:69:19: warning: narrowing conversion of ‘(bbp::sonata::NodeID)nodeID’ from ‘bbp::sonata::NodeID’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:29,304 69 | .select({ nodeID, 0 }, { 1, 2 }) 2025-09-08T19:39:29,305 | ^~~~~~ 2025-09-08T19:39:29,305 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:69:19: warning: narrowing conversion of ‘nodeID’ from ‘const bbp::sonata::NodeID’ {aka ‘const long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:29,310 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:82:19: warning: narrowing conversion of ‘(uint64_t)primaryRangeBegin’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:29,310 82 | .select({ primaryRangeBegin, 0 }, { primaryRangeEnd - primaryRangeBegin, 2 }) 2025-09-08T19:39:29,310 | ^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:29,311 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:82:19: warning: narrowing conversion of ‘primaryRangeBegin’ from ‘const uint64_t’ {aka ‘const long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:29,312 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:82:61: warning: narrowing conversion of ‘(((long long unsigned int)primaryRangeEnd) - ((long long unsigned int)primaryRangeBegin))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:29,312 82 | .select({ primaryRangeBegin, 0 }, { primaryRangeEnd - primaryRangeBegin, 2 }) 2025-09-08T19:39:29,312 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:29,313 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:82:61: warning: narrowing conversion of ‘(((long long unsigned int)primaryRangeEnd) - ((long long unsigned int)primaryRangeBegin))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,225 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = long long unsigned int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,225 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:67:34: required from here 2025-09-08T19:39:30,225 67 | return _readSelection(dset, selection); 2025-09-08T19:39:30,226 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,226 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,226 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,226 | ~~~~~~^~~~~ 2025-09-08T19:39:30,227 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,604 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readChunk(const HighFive::DataSet&, const bbp::sonata::Selection::Range&) [with T = std::__cxx11::basic_string; bbp::sonata::Selection::Range = std::pair]’: 2025-09-08T19:39:30,604 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:71:29: required from ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = std::__cxx11::basic_string; typename std::enable_if<(! std::is_pod<_Tp>::value)>::type* = 0]’ 2025-09-08T19:39:30,605 71 | return _readChunk(dset, selection.ranges().front()); 2025-09-08T19:39:30,605 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,605 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:181:39: required from here 2025-09-08T19:39:30,605 181 | return _readSelection(dset, Selection({{0, dset.getSpace().getDimensions()[0]}})); 2025-09-08T19:39:30,605 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,606 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:62:24: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,606 62 | dset.select({range.first}, {chunkSize}).read(result); 2025-09-08T19:39:30,606 | ~~~~~~^~~~~ 2025-09-08T19:39:30,606 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:62:24: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,611 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = unsigned int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,612 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = unsigned int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,612 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,612 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,612 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:201:46: required from here 2025-09-08T19:39:30,613 201 | const auto indices = getAttribute(name, selection); 2025-09-08T19:39:30,613 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,613 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,613 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,614 | ~~~~~~^~~~~ 2025-09-08T19:39:30,614 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,628 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = float; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,628 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = float; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,629 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,629 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,629 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:296:1: required from here 2025-09-08T19:39:30,629 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,629 | ^~~~~ 2025-09-08T19:39:30,630 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,630 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,630 | ~~~~~~^~~~~ 2025-09-08T19:39:30,630 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,636 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = double; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,636 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = double; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,636 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,636 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,637 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:297:1: required from here 2025-09-08T19:39:30,637 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,637 | ^~~~~ 2025-09-08T19:39:30,637 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,637 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,638 | ~~~~~~^~~~~ 2025-09-08T19:39:30,638 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,641 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = signed char; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,642 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = signed char; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,642 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,642 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,642 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:299:1: required from here 2025-09-08T19:39:30,642 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,643 | ^~~~~ 2025-09-08T19:39:30,643 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,643 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,643 | ~~~~~~^~~~~ 2025-09-08T19:39:30,644 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,647 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = unsigned char; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,647 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = unsigned char; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,647 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,648 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,648 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:300:1: required from here 2025-09-08T19:39:30,648 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,648 | ^~~~~ 2025-09-08T19:39:30,649 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,649 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,649 | ~~~~~~^~~~~ 2025-09-08T19:39:30,650 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,656 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = short int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,656 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = short int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,657 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,657 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,657 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:301:1: required from here 2025-09-08T19:39:30,657 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,657 | ^~~~~ 2025-09-08T19:39:30,658 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,658 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,658 | ~~~~~~^~~~~ 2025-09-08T19:39:30,659 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,665 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = short unsigned int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,665 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = short unsigned int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,665 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,666 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:302:1: required from here 2025-09-08T19:39:30,666 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,666 | ^~~~~ 2025-09-08T19:39:30,666 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,667 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,667 | ~~~~~~^~~~~ 2025-09-08T19:39:30,667 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,674 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,675 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,675 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,675 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,676 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:303:1: required from here 2025-09-08T19:39:30,676 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,676 | ^~~~~ 2025-09-08T19:39:30,676 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,676 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,677 | ~~~~~~^~~~~ 2025-09-08T19:39:30,677 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,683 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = long long int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,683 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = long long int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,684 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,684 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,684 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:305:1: required from here 2025-09-08T19:39:30,684 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,684 | ^~~~~ 2025-09-08T19:39:30,685 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,685 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,685 | ~~~~~~^~~~~ 2025-09-08T19:39:30,686 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,692 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp: In instantiation of ‘std::vector bbp::sonata::{anonymous}::_readSelection(const HighFive::DataSet&, const bbp::sonata::Selection&) [with T = long long unsigned int; typename std::enable_if::value>::type* = 0]’: 2025-09-08T19:39:30,692 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:189:29: required from ‘std::vector bbp::sonata::Population::getAttribute(const std::string&, const bbp::sonata::Selection&) const [with T = long long unsigned int; std::string = std::__cxx11::basic_string]’ 2025-09-08T19:39:30,692 189 | return _readSelection(impl_->getAttributeDataSet(name), selection); 2025-09-08T19:39:30,692 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:30,693 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:306:1: required from here 2025-09-08T19:39:30,693 285 | const std::string&, const Selection&) const; \ 2025-09-08T19:39:30,693 | ^~~~~ 2025-09-08T19:39:30,693 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘(long long unsigned int)range.std::pair::first’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:30,694 96 | dset.select({range.first}, {chunkSize}).read(dst); 2025-09-08T19:39:30,694 | ~~~~~~^~~~~ 2025-09-08T19:39:30,694 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:96:28: warning: narrowing conversion of ‘range.std::pair::first’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2025-09-08T19:39:31,102 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp: In function ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&)’: 2025-09-08T19:39:31,103 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:106:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,103 106 | merged.insert(ids.begin(), ids.end()); 2025-09-08T19:39:31,103 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,104 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:108:62: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator’ changed in GCC 7.1 2025-09-08T19:39:31,104 108 | return Selection::fromValues(merged.begin(), merged.end()); 2025-09-08T19:39:31,104 | ^ 2025-09-08T19:39:31,128 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp: In function ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’: 2025-09-08T19:39:31,128 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:126:41: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 2025-09-08T19:39:31,128 126 | result[lastNodeID].push_back({rangeStart, i}); 2025-09-08T19:39:31,128 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,129 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:132:33: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 2025-09-08T19:39:31,130 132 | result[lastNodeID].push_back({rangeStart, nodeIDs.size()}); 2025-09-08T19:39:31,130 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,158 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp: In function ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’: 2025-09-08T19:39:31,158 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:175:35: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 2025-09-08T19:39:31,158 175 | primaryIndex.push_back({offset, offset}); 2025-09-08T19:39:31,158 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,159 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:178:35: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 2025-09-08T19:39:31,160 178 | primaryIndex.push_back({offset, offset + ranges.size()}); 2025-09-08T19:39:31,160 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,215 In file included from /usr/include/c++/14/vector:66, 2025-09-08T19:39:31,215 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:18, 2025-09-08T19:39:31,216 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.h:12, 2025-09-08T19:39:31,216 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.cpp:10: 2025-09-08T19:39:31,216 /usr/include/c++/14/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:31,216 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 2025-09-08T19:39:31,217 678 | vector(initializer_list __l, 2025-09-08T19:39:31,217 | ^~~~~~ 2025-09-08T19:39:31,282 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../H5Exception.hpp:15, 2025-09-08T19:39:31,283 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:12, 2025-09-08T19:39:31,283 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5Object.hpp:58, 2025-09-08T19:39:31,283 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5PropertyList.hpp:12, 2025-09-08T19:39:31,283 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5FileDriver.hpp:12, 2025-09-08T19:39:31,284 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5File.hpp:14, 2025-09-08T19:39:31,284 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edge_index.h:14: 2025-09-08T19:39:31,284 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp: In function ‘std::vector HighFive::details::to_vector_size_t(std::vector) [with Size = long long unsigned int]’: 2025-09-08T19:39:31,284 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:172:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,285 172 | std::copy(vec.begin(), vec.end(), res.begin()); 2025-09-08T19:39:31,285 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,404 In file included from /usr/include/c++/14/vector:72: 2025-09-08T19:39:31,404 /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = std::pair; _Alloc = std::allocator >]’: 2025-09-08T19:39:31,404 /usr/include/c++/14/bits/vector.tcc:86:43: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,405 86 | __tmp = _M_allocate_and_copy(__n, 2025-09-08T19:39:31,405 | ~~~~~~~~~~~~~~~~~~~~^~~~~ 2025-09-08T19:39:31,405 87 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_start), 2025-09-08T19:39:31,405 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,406 88 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish)); 2025-09-08T19:39:31,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,442 In file included from /usr/include/c++/14/set:63, 2025-09-08T19:39:31,442 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:16: 2025-09-08T19:39:31,443 /usr/include/c++/14/bits/stl_set.h: In member function ‘void std::set<_Key, _Compare, _Alloc>::insert(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Compare = std::less; _Alloc = std::allocator]’: 2025-09-08T19:39:31,443 /usr/include/c++/14/bits/stl_set.h:568:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,443 568 | insert(_InputIterator __first, _InputIterator __last) 2025-09-08T19:39:31,444 | ^~~~~~ 2025-09-08T19:39:31,445 /usr/include/c++/14/bits/stl_set.h:568:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,446 /usr/include/c++/14/bits/stl_set.h:569:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,446 569 | { _M_t._M_insert_range_unique(__first, __last); } 2025-09-08T19:39:31,447 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,455 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = std::_Rb_tree_const_iterator]’: 2025-09-08T19:39:31,456 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:54:11: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator’ changed in GCC 7.1 2025-09-08T19:39:31,456 54 | Selection Selection::fromValues(Iterator first, Iterator last) 2025-09-08T19:39:31,457 | ^~~~~~~~~ 2025-09-08T19:39:31,457 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:54:11: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator’ changed in GCC 7.1 2025-09-08T19:39:31,571 In file included from /usr/include/c++/14/memory:69, 2025-09-08T19:39:31,571 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:15: 2025-09-08T19:39:31,571 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*; _Tp = long long unsigned int]’: 2025-09-08T19:39:31,572 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,572 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:31,572 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,573 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,573 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,574 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:31,574 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,634 In file included from /usr/include/c++/14/string:51, 2025-09-08T19:39:31,634 from /usr/include/c++/14/stdexcept:39, 2025-09-08T19:39:31,634 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/common.h:13, 2025-09-08T19:39:31,634 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:12: 2025-09-08T19:39:31,635 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:31,635 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,635 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:31,635 | ^~~~ 2025-09-08T19:39:31,636 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,637 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,637 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:31,637 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,638 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:31,638 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,703 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:31,703 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,703 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:31,704 | ^~~~ 2025-09-08T19:39:31,724 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Attribute_misc.hpp:29, 2025-09-08T19:39:31,724 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../H5Attribute.hpp:73, 2025-09-08T19:39:31,725 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Annotate_traits_misc.hpp:18, 2025-09-08T19:39:31,725 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Annotate_traits.hpp:86, 2025-09-08T19:39:31,725 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5File.hpp:17: 2025-09-08T19:39:31,725 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp: In member function ‘void HighFive::details::data_converter, typename std::enable_if >::value>::type>::process_result(std::vector&) [with T = std::vector]’: 2025-09-08T19:39:31,726 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:300:69: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,726 300 | single_buffer_to_vectors::type, T>( 2025-09-08T19:39:31,726 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:39:31,726 301 | _vec_align.begin(), _vec_align.end(), _dims, 0, vec); 2025-09-08T19:39:31,727 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,738 /usr/include/c++/14/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator*>; _Tp = std::pair; _Alloc = std::allocator >]’: 2025-09-08T19:39:31,739 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,739 1618 | _M_allocate_and_copy(size_type __n, 2025-09-08T19:39:31,739 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,740 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,740 /usr/include/c++/14/bits/stl_vector.h:1624:42: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,741 1624 | std::__uninitialized_copy_a(__first, __last, __result, 2025-09-08T19:39:31,741 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,741 1625 | _M_get_Tp_allocator()); 2025-09-08T19:39:31,741 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,778 In file included from /usr/include/c++/14/set:62: 2025-09-08T19:39:31,778 /usr/include/c++/14/bits/stl_tree.h: In member function ‘std::__enable_if_t<((bool)std::is_same<_Val, typename std::iterator_traits<_InputIterator>::value_type>::value)> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_range_unique(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Val = long long unsigned int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: 2025-09-08T19:39:31,779 /usr/include/c++/14/bits/stl_tree.h:1096:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,779 1096 | _M_insert_range_unique(_InputIterator __first, _InputIterator __last) 2025-09-08T19:39:31,779 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,780 /usr/include/c++/14/bits/stl_tree.h:1096:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,781 /usr/include/c++/14/bits/stl_tree.h:1100:30: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ changed in GCC 7.1 2025-09-08T19:39:31,781 1100 | _M_insert_unique_(end(), *__first, __an); 2025-09-08T19:39:31,781 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,903 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:31,903 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,903 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:31,904 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,904 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,905 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,905 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:31,905 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,905 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:31,906 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,938 In file included from /usr/include/c++/14/string:44: 2025-09-08T19:39:31,938 /usr/include/c++/14/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:31,938 /usr/include/c++/14/bits/cpp_type_traits.h:608:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,939 608 | __miter_base(_Iterator __it) 2025-09-08T19:39:31,939 | ^~~~~~~~~~~~ 2025-09-08T19:39:31,941 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:31,941 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,941 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:31,942 | ^~~~~~~~~~~~~ 2025-09-08T19:39:31,942 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,971 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:31,971 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:31,984 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp: In function ‘typename std::vector::iterator HighFive::details::single_buffer_to_vectors(typename std::vector::iterator, typename std::vector::iterator, const std::vector&, size_t, std::vector&) [with T = long long unsigned int; U = std::vector]’: 2025-09-08T19:39:31,984 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:108:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:31,985 108 | single_buffer_to_vectors(typename std::vector::iterator begin_buffer, 2025-09-08T19:39:31,985 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,985 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:108:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:31,986 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:119:48: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:31,986 119 | begin_buffer = single_buffer_to_vectors(begin_buffer, end_buffer, dims, 2025-09-08T19:39:31,987 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,987 120 | current_dim + 1, *it); 2025-09-08T19:39:31,987 | ~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,996 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*; _Tp = pair]’: 2025-09-08T19:39:31,996 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,996 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:31,997 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:31,997 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,998 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:31,998 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:31,998 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,009 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = pair*; _ForwardIterator = pair*; _Allocator = allocator >]’: 2025-09-08T19:39:32,009 /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,009 398 | return std::__uninitialized_copy_a 2025-09-08T19:39:32,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,010 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), 2025-09-08T19:39:32,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,010 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); 2025-09-08T19:39:32,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,022 /usr/include/c++/14/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(const_iterator, _Arg&&, _NodeGen&) [with _Arg = const long long unsigned int&; _NodeGen = std::_Rb_tree, std::less, std::allocator >::_Alloc_node; _Key = long long unsigned int; _Val = long long unsigned int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: 2025-09-08T19:39:32,022 /usr/include/c++/14/bits/stl_tree.h:2269:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,022 2269 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-09-08T19:39:32,022 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,092 /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,092 /usr/include/c++/14/bits/vector.tcc:86:43: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,092 86 | __tmp = _M_allocate_and_copy(__n, 2025-09-08T19:39:32,093 | ~~~~~~~~~~~~~~~~~~~~^~~~~ 2025-09-08T19:39:32,093 87 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_start), 2025-09-08T19:39:32,093 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,093 88 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish)); 2025-09-08T19:39:32,093 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,135 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:32,135 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,135 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,136 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,136 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,137 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,137 147 | { return std::copy(__first, __last, __result); } 2025-09-08T19:39:32,137 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,157 In file included from /usr/include/c++/14/string:48: 2025-09-08T19:39:32,158 /usr/include/c++/14/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = long long unsigned int*; _Container = vector]’: 2025-09-08T19:39:32,158 /usr/include/c++/14/bits/stl_iterator.h:1348:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,158 1348 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) 2025-09-08T19:39:32,158 | ^~~~~~~~~~~~ 2025-09-08T19:39:32,175 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_From std::__niter_wrap(_From, _To) [with _From = __gnu_cxx::__normal_iterator >; _To = long long unsigned int*]’: 2025-09-08T19:39:32,176 /usr/include/c++/14/bits/stl_algobase.h:346:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,176 346 | __niter_wrap(_From __from, _To __res) 2025-09-08T19:39:32,176 | ^~~~~~~~~~~~ 2025-09-08T19:39:32,206 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp: In function ‘typename std::vector::iterator HighFive::details::single_buffer_to_vectors(typename std::vector::iterator, typename std::vector::iterator, const std::vector&, size_t, std::vector&) [with T = long long unsigned int]’: 2025-09-08T19:39:32,207 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:32,207 94 | single_buffer_to_vectors(typename std::vector::iterator begin_buffer, 2025-09-08T19:39:32,207 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,208 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:32,209 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:102:26: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:32,209 102 | vec_single_dim.assign(begin_buffer, end_copy_iter); 2025-09-08T19:39:32,209 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,218 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*]’: 2025-09-08T19:39:32,218 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,219 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,219 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,219 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,220 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,220 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:32,221 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,221 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:32,221 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,234 /usr/include/c++/14/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = long long unsigned int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: 2025-09-08T19:39:32,234 /usr/include/c++/14/bits/stl_tree.h:2208:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,234 2208 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-09-08T19:39:32,235 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,317 /usr/include/c++/14/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,318 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,318 1618 | _M_allocate_and_copy(size_type __n, 2025-09-08T19:39:32,318 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,319 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,320 /usr/include/c++/14/bits/stl_vector.h:1624:42: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,320 1624 | std::__uninitialized_copy_a(__first, __last, __result, 2025-09-08T19:39:32,320 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,320 1625 | _M_get_Tp_allocator()); 2025-09-08T19:39:32,320 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,331 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp: In function ‘void HighFive::details::vectors_to_single_buffer(const std::vector&, const std::vector&, size_t, std::vector&) [with T = long long unsigned int]’: 2025-09-08T19:39:32,332 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:73:18: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,332 73 | buffer.insert(buffer.end(), vec_single_dim.begin(), vec_single_dim.end()); 2025-09-08T19:39:32,332 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,333 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Converter_misc.hpp:73:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,353 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long long unsigned int*]’: 2025-09-08T19:39:32,353 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,353 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,354 | ^~~~ 2025-09-08T19:39:32,354 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,355 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,355 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:32,355 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,356 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:32,356 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,411 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long unsigned int*; _ForwardIterator = long long unsigned int*; _Allocator = allocator]’: 2025-09-08T19:39:32,411 /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,412 398 | return std::__uninitialized_copy_a 2025-09-08T19:39:32,412 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,412 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), 2025-09-08T19:39:32,413 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,413 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); 2025-09-08T19:39:32,414 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,442 /usr/include/c++/14/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,442 /usr/include/c++/14/bits/stl_vector.h:828:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,442 828 | assign(_InputIterator __first, _InputIterator __last) 2025-09-08T19:39:32,442 | ^~~~~~ 2025-09-08T19:39:32,443 /usr/include/c++/14/bits/stl_vector.h:828:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,444 /usr/include/c++/14/bits/stl_vector.h:829:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,444 829 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } 2025-09-08T19:39:32,444 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,450 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator*>; _ForwardIterator = std::pair*; bool _TrivialValueTypes = false]’: 2025-09-08T19:39:32,450 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,450 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,451 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,451 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,452 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,452 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-09-08T19:39:32,452 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,508 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*; _Tp = long long unsigned int]’: 2025-09-08T19:39:32,508 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,509 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,509 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,510 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,510 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,511 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:32,511 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,519 /usr/include/c++/14/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,519 /usr/include/c++/14/bits/stl_vector.h:1484:9: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,519 1484 | insert(const_iterator __position, _InputIterator __first, 2025-09-08T19:39:32,520 | ^~~~~~ 2025-09-08T19:39:32,520 /usr/include/c++/14/bits/stl_vector.h:1484:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,521 /usr/include/c++/14/bits/stl_vector.h:1484:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,522 /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,522 1488 | _M_range_insert(begin() + __offset, __first, __last, 2025-09-08T19:39:32,522 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,523 1489 | std::__iterator_category(__first)); 2025-09-08T19:39:32,523 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,523 /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,537 /usr/include/c++/14/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:32,538 /usr/include/c++/14/bits/cpp_type_traits.h:608:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,538 608 | __miter_base(_Iterator __it) 2025-09-08T19:39:32,538 | ^~~~~~~~~~~~ 2025-09-08T19:39:32,540 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long long unsigned int*]’: 2025-09-08T19:39:32,540 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,540 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,541 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,541 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,577 /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,577 /usr/include/c++/14/bits/vector.tcc:318:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,578 318 | vector<_Tp, _Alloc>:: 2025-09-08T19:39:32,578 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,578 /usr/include/c++/14/bits/vector.tcc:318:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,579 /usr/include/c++/14/bits/vector.tcc:331:47: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,580 331 | pointer __tmp(_M_allocate_and_copy(__len, __first, __last)); 2025-09-08T19:39:32,580 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,581 /usr/include/c++/14/bits/vector.tcc:343:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,581 343 | _M_erase_at_end(std::copy(__first, __last, this->_M_impl._M_start)); 2025-09-08T19:39:32,581 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,582 /usr/include/c++/14/bits/vector.tcc:348:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,582 348 | std::copy(__first, __mid, this->_M_impl._M_start); 2025-09-08T19:39:32,582 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,583 /usr/include/c++/14/bits/vector.tcc:352:42: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,583 352 | std::__uninitialized_copy_a(__mid, __last, 2025-09-08T19:39:32,583 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-09-08T19:39:32,584 353 | this->_M_impl._M_finish, 2025-09-08T19:39:32,584 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,584 354 | _M_get_Tp_allocator()); 2025-09-08T19:39:32,584 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,595 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*]’: 2025-09-08T19:39:32,595 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,595 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,596 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,596 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:32,649 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:32,649 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,650 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,650 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,650 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,651 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,651 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:32,651 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,651 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:32,652 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,658 /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,658 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-09-08T19:39:32,658 954 | vector<_Tp, _Alloc>:: 2025-09-08T19:39:32,658 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,659 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,659 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,661 /usr/include/c++/14/bits/vector.tcc:977:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,661 977 | std::copy(__first, __last, __position); 2025-09-08T19:39:32,661 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,662 /usr/include/c++/14/bits/vector.tcc:984:48: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,662 984 | std::__uninitialized_copy_a(__mid, __last, 2025-09-08T19:39:32,662 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-09-08T19:39:32,663 985 | this->_M_impl._M_finish, 2025-09-08T19:39:32,663 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,663 986 | _M_get_Tp_allocator()); 2025-09-08T19:39:32,663 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,664 /usr/include/c++/14/bits/vector.tcc:995:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,664 995 | std::copy(__first, __mid, __position); 2025-09-08T19:39:32,665 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,666 /usr/include/c++/14/bits/vector.tcc:1022:52: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,666 1022 | = std::__uninitialized_copy_a(__first, __last, 2025-09-08T19:39:32,666 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,666 1023 | __new_finish, 2025-09-08T19:39:32,667 | ~~~~~~~~~~~~~ 2025-09-08T19:39:32,667 1024 | _M_get_Tp_allocator()); 2025-09-08T19:39:32,667 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,693 /usr/include/c++/14/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const long long unsigned int*; _Container = vector]’: 2025-09-08T19:39:32,693 /usr/include/c++/14/bits/stl_iterator.h:1348:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,693 1348 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) 2025-09-08T19:39:32,694 | ^~~~~~~~~~~~ 2025-09-08T19:39:32,729 /usr/include/c++/14/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:32,729 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,729 1618 | _M_allocate_and_copy(size_type __n, 2025-09-08T19:39:32,730 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,730 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,731 /usr/include/c++/14/bits/stl_vector.h:1624:42: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,731 1624 | std::__uninitialized_copy_a(__first, __last, __result, 2025-09-08T19:39:32,731 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,731 1625 | _M_get_Tp_allocator()); 2025-09-08T19:39:32,732 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,735 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long long unsigned int*]’: 2025-09-08T19:39:32,735 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,735 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,736 | ^~~~ 2025-09-08T19:39:32,736 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,737 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,737 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:32,738 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,738 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:32,738 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,740 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*; _Tp = long long unsigned int]’: 2025-09-08T19:39:32,741 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,741 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,741 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,741 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,742 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,742 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:32,743 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,778 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:32,778 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,778 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,779 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,779 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,780 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,780 147 | { return std::copy(__first, __last, __result); } 2025-09-08T19:39:32,780 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,782 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long unsigned int*; _ForwardIterator = long long unsigned int*; _Allocator = allocator]’: 2025-09-08T19:39:32,783 /usr/include/c++/14/bits/stl_uninitialized.h:384:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,783 384 | return std::__uninitialized_copy_a(_GLIBCXX_MAKE_MOVE_ITERATOR(__first), 2025-09-08T19:39:32,783 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,783 385 | _GLIBCXX_MAKE_MOVE_ITERATOR(__last), 2025-09-08T19:39:32,784 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,784 386 | __result, __alloc); 2025-09-08T19:39:32,784 | ~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,788 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:32,789 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,789 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,789 | ^~~~ 2025-09-08T19:39:32,789 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,790 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,791 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,791 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:32,791 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,791 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:32,792 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,818 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long long unsigned int*]’: 2025-09-08T19:39:32,818 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,819 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,819 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,819 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,824 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:32,824 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,824 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,824 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,825 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,826 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,826 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:32,826 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,827 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:32,827 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,845 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long unsigned int*]’: 2025-09-08T19:39:32,845 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,846 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,846 | ^~~~ 2025-09-08T19:39:32,846 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,852 In file included from /usr/include/c++/14/cassert:44, 2025-09-08T19:39:32,853 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Slice_traits_misc.hpp:15, 2025-09-08T19:39:32,853 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5DataSet_misc.hpp:29, 2025-09-08T19:39:32,853 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../H5DataSet.hpp:92, 2025-09-08T19:39:32,853 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Node_traits_misc.hpp:19, 2025-09-08T19:39:32,853 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Node_traits.hpp:126, 2025-09-08T19:39:32,854 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5File.hpp:18, 2025-09-08T19:39:32,854 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:17: 2025-09-08T19:39:32,854 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp: In member function ‘bbp::sonata::Selection bbp::sonata::EdgePopulation::connectingEdges(const std::vector&, const std::vector&) const’: 2025-09-08T19:39:32,854 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:105:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,855 105 | assert(std::is_sorted(pre.begin(), pre.end())); // return result of _resolveIndex is sorted 2025-09-08T19:39:32,855 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,855 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:32,855 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,856 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:32,856 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,856 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,856 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,857 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:106:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,857 106 | assert(std::is_sorted(post.begin(), post.end())); 2025-09-08T19:39:32,858 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,859 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:108:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,859 108 | set_intersection( 2025-09-08T19:39:32,859 | ~~~~~~~~~~~~~~~~^ 2025-09-08T19:39:32,859 109 | pre.begin(), pre.end(), 2025-09-08T19:39:32,860 | ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,860 110 | post.begin(), post.end(), 2025-09-08T19:39:32,860 | ~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,860 111 | std::back_inserter(result)); 2025-09-08T19:39:32,861 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,873 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/edges.cpp:108:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,874 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:32,874 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,874 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:32,874 | ^~~~~~~~~~~~~ 2025-09-08T19:39:32,875 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,875 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:32,875 147 | { return std::copy(__first, __last, __result); } 2025-09-08T19:39:32,875 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:32,886 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long unsigned int*]’: 2025-09-08T19:39:32,887 /usr/include/c++/14/bits/stl_iterator.h:2981:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:32,887 2981 | __miter_base(move_iterator<_Iterator> __it) 2025-09-08T19:39:32,887 | ^~~~~~~~~~~~ 2025-09-08T19:39:33,008 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../H5Exception.hpp:15, 2025-09-08T19:39:33,009 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:12, 2025-09-08T19:39:33,009 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5Object.hpp:58, 2025-09-08T19:39:33,009 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5PropertyList.hpp:12, 2025-09-08T19:39:33,009 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5FileDriver.hpp:12, 2025-09-08T19:39:33,009 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5File.hpp:14: 2025-09-08T19:39:33,009 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp: In function ‘std::vector HighFive::details::to_vector_size_t(std::vector) [with Size = long long unsigned int]’: 2025-09-08T19:39:33,010 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:172:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,010 172 | std::copy(vec.begin(), vec.end(), res.begin()); 2025-09-08T19:39:33,010 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,207 In file included from /usr/include/c++/14/algorithm:61, 2025-09-08T19:39:33,207 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/fmt/include/fmt/format.h:31: 2025-09-08T19:39:33,208 /usr/include/c++/14/bits/stl_algo.h: In function ‘bool std::is_sorted(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,208 /usr/include/c++/14/bits/stl_algo.h:3191:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,208 3191 | is_sorted(_ForwardIterator __first, _ForwardIterator __last) 2025-09-08T19:39:33,208 | ^~~~~~~~~ 2025-09-08T19:39:33,209 /usr/include/c++/14/bits/stl_algo.h:3191:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,210 /usr/include/c++/14/bits/stl_algo.h:3192:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,210 3192 | { return std::is_sorted_until(__first, __last) == __last; } 2025-09-08T19:39:33,210 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,217 /usr/include/c++/14/bits/stl_algo.h: In function ‘_OIter std::set_intersection(_IIter1, _IIter1, _IIter2, _IIter2, _OIter) [with _IIter1 = __gnu_cxx::__normal_iterator >; _IIter2 = __gnu_cxx::__normal_iterator >; _OIter = back_insert_iterator >]’: 2025-09-08T19:39:33,217 /usr/include/c++/14/bits/stl_algo.h:5214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,217 5214 | set_intersection(_InputIterator1 __first1, _InputIterator1 __last1, 2025-09-08T19:39:33,218 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,218 /usr/include/c++/14/bits/stl_algo.h:5214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,219 /usr/include/c++/14/bits/stl_algo.h:5214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,219 /usr/include/c++/14/bits/stl_algo.h:5214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,220 /usr/include/c++/14/bits/stl_algo.h:5234:48: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,220 5234 | return _GLIBCXX_STD_A::__set_intersection(__first1, __last1, 2025-09-08T19:39:33,220 | ^ 2025-09-08T19:39:33,221 /usr/include/c++/14/bits/stl_algo.h:5234:48: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,369 In file included from /usr/include/c++/14/string:51, 2025-09-08T19:39:33,369 from /usr/include/c++/14/stdexcept:39, 2025-09-08T19:39:33,370 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/common.h:13, 2025-09-08T19:39:33,370 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:12, 2025-09-08T19:39:33,370 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:14: 2025-09-08T19:39:33,370 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,370 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,370 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:33,370 | ^~~~ 2025-09-08T19:39:33,371 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,372 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,372 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:33,372 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,372 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:33,372 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,521 /usr/include/c++/14/bits/stl_algo.h: In function ‘_FIter std::is_sorted_until(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,521 /usr/include/c++/14/bits/stl_algo.h:3237:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,522 3237 | is_sorted_until(_ForwardIterator __first, _ForwardIterator __last) 2025-09-08T19:39:33,522 | ^~~~~~~~~~~~~~~ 2025-09-08T19:39:33,522 /usr/include/c++/14/bits/stl_algo.h:3237:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,523 /usr/include/c++/14/bits/stl_algo.h:3246:36: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,523 3246 | return std::__is_sorted_until(__first, __last, 2025-09-08T19:39:33,523 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,524 3247 | __gnu_cxx::__ops::__iter_less_iter()); 2025-09-08T19:39:33,524 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,530 /usr/include/c++/14/bits/stl_algo.h: In function ‘_OutputIterator std::__set_intersection(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = __gnu_cxx::__normal_iterator >; _InputIterator2 = __gnu_cxx::__normal_iterator >; _OutputIterator = back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2025-09-08T19:39:33,530 /usr/include/c++/14/bits/stl_algo.h:5173:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,530 5173 | __set_intersection(_InputIterator1 __first1, _InputIterator1 __last1, 2025-09-08T19:39:33,530 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,531 /usr/include/c++/14/bits/stl_algo.h:5173:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,531 /usr/include/c++/14/bits/stl_algo.h:5173:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,532 /usr/include/c++/14/bits/stl_algo.h:5173:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,532 /usr/include/c++/14/bits/stl_algo.h:5178:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,532 5178 | if (__comp(__first1, __first2)) 2025-09-08T19:39:33,533 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,533 /usr/include/c++/14/bits/stl_algo.h:5180:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,533 5180 | else if (__comp(__first2, __first1)) 2025-09-08T19:39:33,534 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,627 In file included from /usr/include/c++/14/string:44: 2025-09-08T19:39:33,627 /usr/include/c++/14/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,627 /usr/include/c++/14/bits/cpp_type_traits.h:608:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,627 608 | __miter_base(_Iterator __it) 2025-09-08T19:39:33,627 | ^~~~~~~~~~~~ 2025-09-08T19:39:33,629 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,629 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,629 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:33,629 | ^~~~~~~~~~~~~ 2025-09-08T19:39:33,630 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,723 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,723 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,723 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:33,723 | ^~~~ 2025-09-08T19:39:33,742 /usr/include/c++/14/bits/stl_algo.h: In function ‘_ForwardIterator std::__is_sorted_until(_ForwardIterator, _ForwardIterator, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2025-09-08T19:39:33,742 /usr/include/c++/14/bits/stl_algo.h:3213:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,743 3213 | __is_sorted_until(_ForwardIterator __first, _ForwardIterator __last, 2025-09-08T19:39:33,743 | ^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,743 /usr/include/c++/14/bits/stl_algo.h:3213:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,744 /usr/include/c++/14/bits/stl_algo.h:3221:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,744 3221 | if (__comp(__next, __first)) 2025-09-08T19:39:33,744 | ~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T19:39:33,752 In file included from /usr/include/c++/14/bits/stl_algobase.h:71: 2025-09-08T19:39:33,752 /usr/include/c++/14/bits/predefined_ops.h: In member function ‘bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,752 /usr/include/c++/14/bits/predefined_ops.h:44:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,752 44 | operator()(_Iterator1 __it1, _Iterator2 __it2) const 2025-09-08T19:39:33,753 | ^~~~~~~~ 2025-09-08T19:39:33,753 /usr/include/c++/14/bits/predefined_ops.h:44:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,803 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(const Values&)’: 2025-09-08T19:39:33,803 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:52:51: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,804 52 | return fromValues(values.begin(), values.end()); 2025-09-08T19:39:33,804 | ^ 2025-09-08T19:39:33,882 In file included from /usr/include/c++/14/string:48: 2025-09-08T19:39:33,882 /usr/include/c++/14/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = long long unsigned int*; _Container = vector]’: 2025-09-08T19:39:33,882 /usr/include/c++/14/bits/stl_iterator.h:1348:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,882 1348 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) 2025-09-08T19:39:33,882 | ^~~~~~~~~~~~ 2025-09-08T19:39:33,884 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp: In member function ‘std::vector > bbp::sonata::Population::enumerationValues(const std::string&) const’: 2025-09-08T19:39:33,884 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.cpp:181:97: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2025-09-08T19:39:33,885 181 | return _readSelection(dset, Selection({{0, dset.getSpace().getDimensions()[0]}})); 2025-09-08T19:39:33,885 | ^ 2025-09-08T19:39:33,950 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:33,950 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:33,951 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:33,951 | ^~~~~~~~~~~~~ 2025-09-08T19:39:34,167 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_From std::__niter_wrap(_From, _To) [with _From = __gnu_cxx::__normal_iterator >; _To = long long unsigned int*]’: 2025-09-08T19:39:34,167 /usr/include/c++/14/bits/stl_algobase.h:346:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,167 346 | __niter_wrap(_From __from, _To __res) 2025-09-08T19:39:34,167 | ^~~~~~~~~~~~ 2025-09-08T19:39:34,180 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../H5Exception.hpp:15, 2025-09-08T19:39:34,180 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:12, 2025-09-08T19:39:34,181 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5Object.hpp:58, 2025-09-08T19:39:34,181 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5PropertyList.hpp:12, 2025-09-08T19:39:34,181 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5FileDriver.hpp:12, 2025-09-08T19:39:34,181 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/H5File.hpp:14, 2025-09-08T19:39:34,181 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:17: 2025-09-08T19:39:34,181 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp: In function ‘std::vector HighFive::details::to_vector_size_t(std::vector) [with Size = long long unsigned int]’: 2025-09-08T19:39:34,181 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/extlib/HighFive/include/highfive/bits/../bits/H5Utils.hpp:172:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,182 172 | std::copy(vec.begin(), vec.end(), res.begin()); 2025-09-08T19:39:34,182 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,343 In file included from /usr/include/c++/14/vector:66, 2025-09-08T19:39:34,343 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:18, 2025-09-08T19:39:34,344 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/src/population.hpp:14: 2025-09-08T19:39:34,344 /usr/include/c++/14/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = std::pair; _Alloc = std::allocator >]’: 2025-09-08T19:39:34,344 /usr/include/c++/14/bits/stl_vector.h:606:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:34,344 606 | std::__uninitialized_copy_a(__x.begin(), __x.end(), 2025-09-08T19:39:34,344 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,345 607 | this->_M_impl._M_start, 2025-09-08T19:39:34,345 | ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,345 608 | _M_get_Tp_allocator()); 2025-09-08T19:39:34,345 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,354 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:34,355 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:54:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,355 54 | Selection Selection::fromValues(Iterator first, Iterator last) 2025-09-08T19:39:34,355 | ^~~~~~~~~ 2025-09-08T19:39:34,355 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:54:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,366 In file included from /usr/include/c++/14/vector:72: 2025-09-08T19:39:34,367 /usr/include/c++/14/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:34,367 /usr/include/c++/14/bits/vector.tcc:86:43: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,367 86 | __tmp = _M_allocate_and_copy(__n, 2025-09-08T19:39:34,367 | ~~~~~~~~~~~~~~~~~~~~^~~~~ 2025-09-08T19:39:34,367 87 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_start), 2025-09-08T19:39:34,367 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,367 88 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish)); 2025-09-08T19:39:34,367 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,386 In file included from /usr/include/c++/14/memory:69, 2025-09-08T19:39:34,386 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:15: 2025-09-08T19:39:34,386 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long unsigned int*; _ForwardIterator = long long unsigned int*; _Allocator = allocator]’: 2025-09-08T19:39:34,386 /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,387 398 | return std::__uninitialized_copy_a 2025-09-08T19:39:34,387 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,387 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), 2025-09-08T19:39:34,387 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,387 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); 2025-09-08T19:39:34,387 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,396 /usr/include/c++/14/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’: 2025-09-08T19:39:34,397 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2025-09-08T19:39:34,397 678 | vector(initializer_list __l, 2025-09-08T19:39:34,397 | ^~~~~~ 2025-09-08T19:39:34,548 In file included from /usr/include/c++/14/string:51, 2025-09-08T19:39:34,549 from /usr/include/c++/14/stdexcept:39, 2025-09-08T19:39:34,549 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/common.h:13, 2025-09-08T19:39:34,549 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:12: 2025-09-08T19:39:34,549 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:34,549 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,549 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:34,549 | ^~~~ 2025-09-08T19:39:34,550 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,550 /usr/include/c++/14/bits/stl_algobase.h:651:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:34,551 650 | return std::__copy_move_a<__is_move_iterator<_II>::__value> 2025-09-08T19:39:34,551 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,551 651 | (std::__miter_base(__first), std::__miter_base(__last), __result); 2025-09-08T19:39:34,551 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,585 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*; _Tp = long long unsigned int]’: 2025-09-08T19:39:34,586 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,586 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:34,586 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,586 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,587 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,587 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:34,587 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,738 In file included from /usr/include/c++/14/memory:69, 2025-09-08T19:39:34,738 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/include/bbp/sonata/population.h:15: 2025-09-08T19:39:34,738 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = pair*; _Tp = pair]’: 2025-09-08T19:39:34,738 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:34,739 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:34,739 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,739 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:34,739 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:34,740 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:34,740 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,758 /usr/include/c++/14/bits/stl_vector.h: In member function ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2025-09-08T19:39:34,758 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,758 1618 | _M_allocate_and_copy(size_type __n, 2025-09-08T19:39:34,758 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,758 /usr/include/c++/14/bits/stl_vector.h:1618:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,759 /usr/include/c++/14/bits/stl_vector.h:1624:42: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,759 1624 | std::__uninitialized_copy_a(__first, __last, __result, 2025-09-08T19:39:34,759 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,759 1625 | _M_get_Tp_allocator()); 2025-09-08T19:39:34,759 | ~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,797 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:34,797 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,797 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:34,797 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,797 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,798 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:34,798 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:34,798 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:34,798 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:34,798 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,044 In file included from /usr/include/c++/14/string:44: 2025-09-08T19:39:35,044 /usr/include/c++/14/bits/cpp_type_traits.h: In function ‘_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:35,044 /usr/include/c++/14/bits/cpp_type_traits.h:608:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,045 608 | __miter_base(_Iterator __it) 2025-09-08T19:39:35,045 | ^~~~~~~~~~~~ 2025-09-08T19:39:35,046 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:35,046 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,046 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,046 | ^~~~~~~~~~~~~ 2025-09-08T19:39:35,046 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:35,047 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,047 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:35,047 | ^~~~~~~~~~~~~ 2025-09-08T19:39:35,047 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,047 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,048 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,048 147 | { return std::copy(__first, __last, __result); } 2025-09-08T19:39:35,048 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,149 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = pair*]’: 2025-09-08T19:39:35,149 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,149 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,149 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,149 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,150 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,150 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:35,150 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,150 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:35,150 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,173 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*; _Tp = long long unsigned int]’: 2025-09-08T19:39:35,173 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,173 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,173 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,173 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,174 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,174 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:35,174 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,181 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long unsigned int*; _ForwardIterator = long long unsigned int*; _Allocator = allocator]’: 2025-09-08T19:39:35,182 /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,182 398 | return std::__uninitialized_copy_a 2025-09-08T19:39:35,182 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,182 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), 2025-09-08T19:39:35,182 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,182 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); 2025-09-08T19:39:35,182 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,230 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long unsigned int*]’: 2025-09-08T19:39:35,230 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,230 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:35,231 | ^~~~ 2025-09-08T19:39:35,231 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,372 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long unsigned int*]’: 2025-09-08T19:39:35,373 /usr/include/c++/14/bits/stl_iterator.h:2981:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,373 2981 | __miter_base(move_iterator<_Iterator> __it) 2025-09-08T19:39:35,373 | ^~~~~~~~~~~~ 2025-09-08T19:39:35,467 In file included from /usr/include/c++/14/string:48: 2025-09-08T19:39:35,467 /usr/include/c++/14/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = long long unsigned int*; _Container = vector]’: 2025-09-08T19:39:35,467 /usr/include/c++/14/bits/stl_iterator.h:1348:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,467 1348 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) 2025-09-08T19:39:35,468 | ^~~~~~~~~~~~ 2025-09-08T19:39:35,540 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator = std::pair*; bool _TrivialValueTypes = false]’: 2025-09-08T19:39:35,541 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,541 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,541 | ^~~~~~~~~~~~~ 2025-09-08T19:39:35,541 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,542 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,542 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-09-08T19:39:35,542 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,556 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = pair*; _ForwardIterator = pair*; _Allocator = allocator >]’: 2025-09-08T19:39:35,556 /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:35,556 398 | return std::__uninitialized_copy_a 2025-09-08T19:39:35,556 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,556 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), 2025-09-08T19:39:35,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,556 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); 2025-09-08T19:39:35,556 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,563 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:35,563 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,564 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,564 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,564 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,564 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,565 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:35,565 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,565 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:35,565 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,574 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:35,575 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,575 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:35,575 | ^~~~ 2025-09-08T19:39:35,837 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = pair*]’: 2025-09-08T19:39:35,837 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,837 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,837 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,838 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-09-08T19:39:35,850 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*; _Tp = pair]’: 2025-09-08T19:39:35,851 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:35,851 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,851 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,851 /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:35,852 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:35,852 373 | return std::uninitialized_copy(__first, __last, __result); 2025-09-08T19:39:35,853 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,859 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long unsigned int*]’: 2025-09-08T19:39:35,859 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,859 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:35,859 | ^~~~~~~~~~~~~ 2025-09-08T19:39:35,860 /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,860 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:35,860 147 | { return std::copy(__first, __last, __result); } 2025-09-08T19:39:35,860 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:35,873 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]’: 2025-09-08T19:39:35,874 /usr/include/c++/14/bits/stl_algobase.h:553:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:35,874 553 | __copy_move_a(_II __first, _II __last, _OI __result) 2025-09-08T19:39:35,874 | ^~~~~~~~~~~~~ 2025-09-08T19:39:36,116 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*]’: 2025-09-08T19:39:36,116 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,116 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:36,117 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:36,117 /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,117 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,117 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: 2025-09-08T19:39:36,117 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:36,117 185 | __uninit_copy(__first, __last, __result); 2025-09-08T19:39:36,118 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:36,119 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long unsigned int*]’: 2025-09-08T19:39:36,119 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:36,120 642 | copy(_II __first, _II __last, _OI __result) 2025-09-08T19:39:36,120 | ^~~~ 2025-09-08T19:39:36,120 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:36,129 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_From std::__niter_wrap(_From, _To) [with _From = __gnu_cxx::__normal_iterator >; _To = long long unsigned int*]’: 2025-09-08T19:39:36,129 /usr/include/c++/14/bits/stl_algobase.h:346:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-08T19:39:36,130 346 | __niter_wrap(_From __from, _To __res) 2025-09-08T19:39:36,130 | ^~~~~~~~~~~~ 2025-09-08T19:39:36,320 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator*>; _ForwardIterator = std::pair*; bool _TrivialValueTypes = false]’: 2025-09-08T19:39:36,320 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,320 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:36,321 | ^~~~~~~~~~~~~ 2025-09-08T19:39:36,321 /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,321 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,321 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-09-08T19:39:36,321 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T19:39:36,323 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long unsigned int*]’: 2025-09-08T19:39:36,323 /usr/include/c++/14/bits/stl_iterator.h:2981:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2025-09-08T19:39:36,323 2981 | __miter_base(move_iterator<_Iterator> __it) 2025-09-08T19:39:36,324 | ^~~~~~~~~~~~ 2025-09-08T19:39:36,513 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator*>; _ForwardIterator = pair*]’: 2025-09-08T19:39:36,513 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:36,513 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2025-09-08T19:39:36,513 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:36,513 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator*>’ changed in GCC 7.1 2025-09-08T19:39:37,847 [ 80%] Linking CXX static library libsonata.a 2025-09-08T19:39:38,589 [ 80%] Built target sonata_static 2025-09-08T19:39:38,708 [ 90%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o 2025-09-08T19:39:41,014 In file included from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h:13, 2025-09-08T19:39:41,014 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:43, 2025-09-08T19:39:41,014 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/bindings.cpp:1: 2025-09-08T19:39:41,014 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h: In function ‘std::string pybind11::detail::error_string()’: 2025-09-08T19:39:41,014 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:442:36: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,014 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-08T19:39:41,014 | ^~ 2025-09-08T19:39:41,015 In file included from /usr/include/python3.13/Python.h:67, 2025-09-08T19:39:41,015 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/detail/common.h:112, 2025-09-08T19:39:41,015 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pytypes.h:12, 2025-09-08T19:39:41,015 from /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:13: 2025-09-08T19:39:41,015 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,016 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,016 | ^~~~~~ 2025-09-08T19:39:41,016 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:442:75: error: expected primary-expression before ‘>’ token 2025-09-08T19:39:41,016 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-08T19:39:41,016 | ^ 2025-09-08T19:39:41,016 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:442:77: error: expected primary-expression before ‘)’ token 2025-09-08T19:39:41,016 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-08T19:39:41,017 | ^ 2025-09-08T19:39:41,017 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:444:29: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,017 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-08T19:39:41,017 | ^~ 2025-09-08T19:39:41,017 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,018 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,018 | ^~~~~~ 2025-09-08T19:39:41,018 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:444:64: error: expected primary-expression before ‘>’ token 2025-09-08T19:39:41,018 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-08T19:39:41,018 | ^ 2025-09-08T19:39:41,018 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:444:66: error: expected primary-expression before ‘)’ token 2025-09-08T19:39:41,018 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-08T19:39:41,019 | ^ 2025-09-08T19:39:41,019 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/cast.h:445:26: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,019 445 | frame = frame->f_back; 2025-09-08T19:39:41,019 | ^~ 2025-09-08T19:39:41,019 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,019 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,019 | ^~~~~~ 2025-09-08T19:39:41,153 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h: At global scope: 2025-09-08T19:39:41,153 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h:185:10: error: ‘uint16_t’ in namespace ‘std’ does not name a type; did you mean ‘wint_t’? 2025-09-08T19:39:41,153 185 | std::uint16_t nargs; 2025-09-08T19:39:41,153 | ^~~~~~~~ 2025-09-08T19:39:41,154 | wint_t 2025-09-08T19:39:41,164 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h: In constructor ‘pybind11::detail::function_call::function_call(const pybind11::detail::function_record&, pybind11::handle)’: 2025-09-08T19:39:41,165 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h:283:20: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,165 283 | args.reserve(f.nargs); 2025-09-08T19:39:41,165 | ^~~~~ 2025-09-08T19:39:41,165 | args 2025-09-08T19:39:41,165 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/attr.h:284:28: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,165 284 | args_convert.reserve(f.nargs); 2025-09-08T19:39:41,166 | ^~~~~ 2025-09-08T19:39:41,166 | args 2025-09-08T19:39:41,250 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h: In member function ‘void pybind11::cpp_function::initialize_generic(pybind11::detail::function_record*, const char*, const std::type_info* const*, pybind11::size_t)’: 2025-09-08T19:39:41,251 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:283:14: error: ‘struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,251 283 | rec->nargs = (std::uint16_t) args; 2025-09-08T19:39:41,251 | ^~~~~ 2025-09-08T19:39:41,251 | args 2025-09-08T19:39:41,253 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:283:28: error: ‘uint16_t’ is not a member of ‘std’; did you mean ‘wint_t’? 2025-09-08T19:39:41,253 283 | rec->nargs = (std::uint16_t) args; 2025-09-08T19:39:41,253 | ^~~~~~~~ 2025-09-08T19:39:41,253 | wint_t 2025-09-08T19:39:41,275 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h: In static member function ‘static PyObject* pybind11::cpp_function::dispatcher(PyObject*, PyObject*, PyObject*)’: 2025-09-08T19:39:41,275 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:481:40: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,275 481 | size_t pos_args = func.nargs; // Number of positional arguments that we need 2025-09-08T19:39:41,275 | ^~~~~ 2025-09-08T19:39:41,275 | args 2025-09-08T19:39:41,281 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:603:46: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,281 603 | if (call.args.size() != func.nargs || call.args_convert.size() != func.nargs) 2025-09-08T19:39:41,282 | ^~~~~ 2025-09-08T19:39:41,282 | args 2025-09-08T19:39:41,282 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:603:88: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,282 603 | if (call.args.size() != func.nargs || call.args_convert.size() != func.nargs) 2025-09-08T19:39:41,282 | ^~~~~ 2025-09-08T19:39:41,282 | args 2025-09-08T19:39:41,283 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:612:53: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-08T19:39:41,283 612 | second_pass_convert.resize(func.nargs, false); 2025-09-08T19:39:41,283 | ^~~~~ 2025-09-08T19:39:41,283 | args 2025-09-08T19:39:41,444 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::function pybind11::get_type_overload(const void*, const detail::type_info*, const char*)’: 2025-09-08T19:39:41,444 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1994:49: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’ 2025-09-08T19:39:41,445 1994 | PyFrameObject *frame = PyThreadState_Get()->frame; 2025-09-08T19:39:41,445 | ^~~~~ 2025-09-08T19:39:41,445 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1995:41: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,445 1995 | if (frame && (std::string) str(frame->f_code->co_name) == name && 2025-09-08T19:39:41,445 | ^~ 2025-09-08T19:39:41,445 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,445 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,446 | ^~~~~~ 2025-09-08T19:39:41,446 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1996:14: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,446 1996 | frame->f_code->co_argcount > 0) { 2025-09-08T19:39:41,446 | ^~ 2025-09-08T19:39:41,446 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,446 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,446 | ^~~~~~ 2025-09-08T19:39:41,447 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1999:18: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,447 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-08T19:39:41,447 | ^~ 2025-09-08T19:39:41,447 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,447 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,447 | ^~~~~~ 2025-09-08T19:39:41,448 In file included from /usr/include/python3.13/Python.h:19: 2025-09-08T19:39:41,448 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1999:30: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,448 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-08T19:39:41,448 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:41,448 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,448 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,448 | ^~~~~~ 2025-09-08T19:39:41,449 In file included from /usr/include/python3.13/Python.h:63: 2025-09-08T19:39:41,449 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/python/pybind11/include/pybind11/pybind11.h:1999:30: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,449 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-08T19:39:41,449 | ^~~~~~~~~~~~~~~~ 2025-09-08T19:39:41,449 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T19:39:41,450 22 | typedef struct _frame PyFrameObject; 2025-09-08T19:39:41,450 | ^~~~~~ 2025-09-08T19:39:47,950 gmake[3]: *** [python/CMakeFiles/sonata_python.dir/build.make:79: python/CMakeFiles/sonata_python.dir/bindings.cpp.o] Error 1 2025-09-08T19:39:47,951 gmake[2]: *** [CMakeFiles/Makefile2:322: python/CMakeFiles/sonata_python.dir/all] Error 2 2025-09-08T19:39:47,951 gmake[1]: *** [CMakeFiles/Makefile2:329: python/CMakeFiles/sonata_python.dir/rule] Error 2 2025-09-08T19:39:47,952 gmake: *** [Makefile:231: sonata_python] Error 2 2025-09-08T19:39:47,964 Traceback (most recent call last): 2025-09-08T19:39:47,971 File "", line 2, in 2025-09-08T19:39:47,971 exec(compile(''' 2025-09-08T19:39:47,971 ~~~~^^^^^^^^^^^^ 2025-09-08T19:39:47,971 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:39:47,972 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,972 ...<32 lines>... 2025-09-08T19:39:47,972 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:39:47,972 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,972 ''' % ('/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py',), "", "exec")) 2025-09-08T19:39:47,972 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,972 File "", line 35, in 2025-09-08T19:39:47,973 File "/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py", line 127, in 2025-09-08T19:39:47,973 setup( 2025-09-08T19:39:47,973 ~~~~~^ 2025-09-08T19:39:47,973 name="libsonata", 2025-09-08T19:39:47,973 ^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,973 ...<14 lines>... 2025-09-08T19:39:47,973 use_scm_version=True, 2025-09-08T19:39:47,973 ^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,974 ) 2025-09-08T19:39:47,974 ^ 2025-09-08T19:39:47,974 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T19:39:47,974 return distutils.core.setup(**attrs) 2025-09-08T19:39:47,974 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,974 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T19:39:47,974 return run_commands(dist) 2025-09-08T19:39:47,974 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T19:39:47,975 dist.run_commands() 2025-09-08T19:39:47,975 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:39:47,975 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T19:39:47,975 self.run_command(cmd) 2025-09-08T19:39:47,975 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:39:47,975 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:39:47,975 super().run_command(command) 2025-09-08T19:39:47,976 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,976 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:39:47,976 cmd_obj.run() 2025-09-08T19:39:47,976 ~~~~~~~~~~~^^ 2025-09-08T19:39:47,976 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T19:39:47,976 self.run_command("build") 2025-09-08T19:39:47,976 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,976 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:39:47,977 self.distribution.run_command(command) 2025-09-08T19:39:47,977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,977 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:39:47,977 super().run_command(command) 2025-09-08T19:39:47,977 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,977 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:39:47,977 cmd_obj.run() 2025-09-08T19:39:47,978 ~~~~~~~~~~~^^ 2025-09-08T19:39:47,978 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T19:39:47,978 self.run_command(cmd_name) 2025-09-08T19:39:47,978 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T19:39:47,978 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:39:47,978 self.distribution.run_command(command) 2025-09-08T19:39:47,978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,978 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:39:47,979 super().run_command(command) 2025-09-08T19:39:47,979 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:39:47,979 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:39:47,979 cmd_obj.run() 2025-09-08T19:39:47,979 ~~~~~~~~~~~^^ 2025-09-08T19:39:47,979 File "/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py", line 68, in run 2025-09-08T19:39:47,979 self.build_extension(ext) 2025-09-08T19:39:47,980 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:39:47,980 File "/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py", line 105, in build_extension 2025-09-08T19:39:47,980 subprocess.check_call( 2025-09-08T19:39:47,980 ~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T19:39:47,980 ["cmake", "--build", "."] + build_args, cwd=self.build_temp 2025-09-08T19:39:47,980 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:39:47,980 ) 2025-09-08T19:39:47,981 ^ 2025-09-08T19:39:47,981 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T19:39:47,981 raise CalledProcessError(retcode, cmd) 2025-09-08T19:39:47,981 subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--config', 'ON', '--target', 'sonata_python', '--', '-j']' returned non-zero exit status 2. 2025-09-08T19:39:48,095 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T19:39:48,108 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T19:39:48,108 exec(compile('"'"''"'"''"'"' 2025-09-08T19:39:48,108 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:39:48,108 # 2025-09-08T19:39:48,108 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T19:39:48,108 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T19:39:48,108 # - It provides a clear error message when setuptools is not installed. 2025-09-08T19:39:48,108 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T19:39:48,108 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T19:39:48,108 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T19:39:48,108 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T19:39:48,108 import os, sys, tokenize, traceback 2025-09-08T19:39:48,108 2025-09-08T19:39:48,108 try: 2025-09-08T19:39:48,108 import setuptools 2025-09-08T19:39:48,108 except ImportError: 2025-09-08T19:39:48,108 print( 2025-09-08T19:39:48,108 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T19:39:48,108 "the build environment with exception:", 2025-09-08T19:39:48,108 file=sys.stderr, 2025-09-08T19:39:48,108 ) 2025-09-08T19:39:48,108 traceback.print_exc() 2025-09-08T19:39:48,108 sys.exit(1) 2025-09-08T19:39:48,108 2025-09-08T19:39:48,108 __file__ = %r 2025-09-08T19:39:48,108 sys.argv[0] = __file__ 2025-09-08T19:39:48,108 2025-09-08T19:39:48,108 if os.path.exists(__file__): 2025-09-08T19:39:48,108 filename = __file__ 2025-09-08T19:39:48,108 with tokenize.open(__file__) as f: 2025-09-08T19:39:48,108 setup_py_code = f.read() 2025-09-08T19:39:48,108 else: 2025-09-08T19:39:48,108 filename = "" 2025-09-08T19:39:48,108 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T19:39:48,108 2025-09-08T19:39:48,108 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:39:48,108 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-fslbtm95[/] 2025-09-08T19:39:48,109 [bold magenta]cwd[/]: /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/ 2025-09-08T19:39:48,109 Building wheel for libsonata (setup.py): finished with status 'error' 2025-09-08T19:39:48,110 ERROR: Failed building wheel for libsonata 2025-09-08T19:39:48,111 Running setup.py clean for libsonata 2025-09-08T19:39:48,112 Running command python setup.py clean 2025-09-08T19:39:48,826 /tmp/pip-wheel-hqut1h1x/libsonata_2c22e69259e148aeae1a681568dfc11f/setup.py:12: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T19:39:48,826 !! 2025-09-08T19:39:48,826 ******************************************************************************** 2025-09-08T19:39:48,826 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T19:39:48,827 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T19:39:48,827 calls to avoid build errors in the future. 2025-09-08T19:39:48,827 ******************************************************************************** 2025-09-08T19:39:48,827 !! 2025-09-08T19:39:48,827 from setuptools.command.test import test 2025-09-08T19:39:48,945 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T19:39:48,946 !! 2025-09-08T19:39:48,946 ******************************************************************************** 2025-09-08T19:39:48,946 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T19:39:48,946 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T19:39:48,946 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T19:39:48,946 or your builds will no longer be supported. 2025-09-08T19:39:48,946 ******************************************************************************** 2025-09-08T19:39:48,946 !! 2025-09-08T19:39:48,947 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T19:39:49,906 running clean 2025-09-08T19:39:50,061 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:39:50,072 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:39:50,073 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T19:39:50,073 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T19:39:50,073 removing 'build' 2025-09-08T19:39:50,191 Failed to build libsonata 2025-09-08T19:39:50,191 ERROR: Failed to build one or more wheels 2025-09-08T19:39:50,192 Exception information: 2025-09-08T19:39:50,192 Traceback (most recent call last): 2025-09-08T19:39:50,192 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T19:39:50,192 status = _inner_run() 2025-09-08T19:39:50,192 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T19:39:50,192 return self.run(options, args) 2025-09-08T19:39:50,192 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T19:39:50,192 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T19:39:50,192 return func(self, options, args) 2025-09-08T19:39:50,192 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T19:39:50,192 raise CommandError("Failed to build one or more wheels") 2025-09-08T19:39:50,192 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T19:39:50,197 Removed build tracker: '/tmp/pip-build-tracker-zodm3qk1'