2025-09-08T19:44:48,851 Created temporary directory: /tmp/pip-build-tracker-6nmpnl2e 2025-09-08T19:44:48,851 Initialized build tracking at /tmp/pip-build-tracker-6nmpnl2e 2025-09-08T19:44:48,852 Created build tracker: /tmp/pip-build-tracker-6nmpnl2e 2025-09-08T19:44:48,852 Entered build tracker: /tmp/pip-build-tracker-6nmpnl2e 2025-09-08T19:44:48,852 Created temporary directory: /tmp/pip-wheel-sg9y7hsc 2025-09-08T19:44:48,855 Created temporary directory: /tmp/pip-ephem-wheel-cache-bcdby7d6 2025-09-08T19:44:48,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T19:44:48,914 2 location(s) to search for versions of frag-pele: 2025-09-08T19:44:48,914 * https://pypi.org/simple/frag-pele/ 2025-09-08T19:44:48,914 * https://www.piwheels.org/simple/frag-pele/ 2025-09-08T19:44:48,914 Fetching project page and analyzing links: https://pypi.org/simple/frag-pele/ 2025-09-08T19:44:48,915 Getting page https://pypi.org/simple/frag-pele/ 2025-09-08T19:44:48,916 Found index url https://pypi.org/simple/ 2025-09-08T19:44:49,124 Fetched page https://pypi.org/simple/frag-pele/ as application/vnd.pypi.simple.v1+json 2025-09-08T19:44:49,129 Found link https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0 2025-09-08T19:44:49,130 Found link https://files.pythonhosted.org/packages/d0/f0/86387845e4a8f6e60d4a4c22522f839fc3beda80130663bd03382b28a1f4/frag_pele-1.1.0.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.1 2025-09-08T19:44:49,130 Found link https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.2 2025-09-08T19:44:49,131 Found link https://files.pythonhosted.org/packages/b5/51/ed7816753a4eeed924b5890507ebcfe9a413d63070b08ac248f683cefac2/frag_pele-1.1.0.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.3 2025-09-08T19:44:49,131 Found link https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.4 2025-09-08T19:44:49,132 Found link https://files.pythonhosted.org/packages/ed/d4/6648da9cb9257d09439502d43db14a4942c4d1dd35d40377d4ce46c3c466/frag_pele-2.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.1 2025-09-08T19:44:49,132 Found link https://files.pythonhosted.org/packages/ee/f5/0400b73f5f6be4e6fb5a1792db7698af6084f6930a9abeb89cb1535f1bdd/frag_pele-2.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.2 2025-09-08T19:44:49,132 Found link https://files.pythonhosted.org/packages/90/35/ace23ab99bc3e98a8269a3a3d33e8e717768ff6db75754077efd94323e16/frag_pele-2.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.3 2025-09-08T19:44:49,133 Found link https://files.pythonhosted.org/packages/79/a5/050e2ac47772096b1906f154e7c704d2e3d121823fe04772618f4e288289/frag_pele-2.2.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.2.1 2025-09-08T19:44:49,133 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/4a/93/046a93fe08f3f658c27530aadccb6b6e9e9a1cb25aae99d86940af5adce0/frag_pele-3.0.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,134 Found link https://files.pythonhosted.org/packages/33/76/a0f81fd6c76ea115357677bb529efebf25ae6b905c2bcccb17a2f6f1718b/frag_pele-3.0.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.0.0 2025-09-08T19:44:49,134 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/94/4c/1549b7349fec873e2c06fae6013fbcfcb2bd626e06d864b313d01d62d955/frag_pele-3.1.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,134 Found link https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.0 2025-09-08T19:44:49,135 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/16/15/e3132e52417b05a0c88ed42ea62498b2641052cf42e6a42b4d204754c9ae/frag_pele-3.1.1-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,135 Found link https://files.pythonhosted.org/packages/cc/2d/7ff1c9faf26cf8824380629807559002692ffef0b42dddbc1823b9abc521/frag_pele-3.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.1 2025-09-08T19:44:49,135 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/32/ad/92e938dfbde9c8a3d98125a92eddd37b260ab4ebc40746c048d03ad98318/frag_pele-3.1.2-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,136 Found link https://files.pythonhosted.org/packages/5a/ef/977fde423ae01b491519f8028f7e286848c51f01a3eefa51593996d91ceb/frag_pele-3.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.2 2025-09-08T19:44:49,136 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/ff/b0/1a7d694865bc6c8bb32d7d2693ae1b3bbe074ad5b6dad5cfdbb8b7fe076d/frag_pele-3.1.3-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,136 Found link https://files.pythonhosted.org/packages/bd/8b/8754c70b54071cc0e9b5c49ddf360d8278611f4b6a6b05a6162c9b7fb0a1/frag_pele-3.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.3 2025-09-08T19:44:49,137 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/99/96/e7c37c95b7b4ff38ace877bf34e7be992506223211463c3b3f4776286dfe/frag_pele-3.1.4-py3-none-any.whl (from https://pypi.org/simple/frag-pele/) 2025-09-08T19:44:49,137 Found link https://files.pythonhosted.org/packages/69/06/36bcd297a916d4a0e2c35834e20e6a73415648428cb1417548e93fc7c846/frag_pele-3.1.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.4 2025-09-08T19:44:49,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/frag-pele/ 2025-09-08T19:44:49,138 Getting page https://www.piwheels.org/simple/frag-pele/ 2025-09-08T19:44:49,140 Found index url https://www.piwheels.org/simple/ 2025-09-08T19:44:49,235 Fetched page https://www.piwheels.org/simple/frag-pele/ as text/html 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.4-py3-none-any.whl#sha256=5a1a28229329dbf2a8d8143fb15600438667a5b0e9556c771a4532f4e5aa2b87 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.3-py3-none-any.whl#sha256=f90dd9e42465039b6c71ff6cbee5a10d12aa624692b3a90f567dbf6d0f7ba5fd (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.2-py3-none-any.whl#sha256=75868403d44d58091fd2ee6662e81489116cedf3da152a42ea37be4b02a2e040 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.1-py3-none-any.whl#sha256=a36f94ff40e24eb6335bebdcdb7dfdc7ccff725ccf542f2972162d336ea4458e (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.0-py3-none-any.whl#sha256=9455207f1075adb67362805e3a8593d2a670b5d0e3c593fed14264c0356faad7 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.0.0-py3-none-any.whl#sha256=1793462d15783e1f0cf560b62550e3dfd2d27b4ee54d8ad026a23114f0386b42 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.2.1-py3-none-any.whl#sha256=dac51d1ee2aae573ddceba053c9b3710c17dfad54dd9868508c09b2b78ef562b (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,240 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.3-py3-none-any.whl#sha256=6f92a9b1a982e5de58bb9ddad669b8bf101cb931228adc6af0490116f05c251d (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.2-py3-none-any.whl#sha256=62b6da24477854ebf1cdaa132a0fc842846a7cf0537a57f8c5b495c9704e6e85 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.1-py3-none-any.whl#sha256=3cdd313a3e30f08a1ee8a11f0e8e77faac7f8fc7b5c59092751030c27dd488c7 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv6l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv7l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv7l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv6l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv7l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,241 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv6l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv6l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv7l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv7l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv6l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv7l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,242 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv6l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,243 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,243 Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/) 2025-09-08T19:44:49,243 Skipping link: not a file: https://www.piwheels.org/simple/frag-pele/ 2025-09-08T19:44:49,243 Skipping link: not a file: https://pypi.org/simple/frag-pele/ 2025-09-08T19:44:49,269 Given no hashes to check 1 links for project 'frag-pele': discarding no candidates 2025-09-08T19:44:49,270 Collecting frag-pele==1.1.0 2025-09-08T19:44:49,271 Created temporary directory: /tmp/pip-unpack-fv4d0lr9 2025-09-08T19:44:49,528 Downloading frag_pele-1.1.0.tar.gz (236 kB) 2025-09-08T19:44:49,674 Added frag-pele==1.1.0 from https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-6nmpnl2e' 2025-09-08T19:44:49,675 Running setup.py (path:/tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32/setup.py) egg_info for package frag-pele 2025-09-08T19:44:49,675 Created temporary directory: /tmp/pip-pip-egg-info-qychjg_m 2025-09-08T19:44:49,676 Preparing metadata (setup.py): started 2025-09-08T19:44:49,676 Running command python setup.py egg_info 2025-09-08T19:44:50,802 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:44:51,015 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:44:51,015 !! 2025-09-08T19:44:51,015 ******************************************************************************** 2025-09-08T19:44:51,015 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:44:51,016 License :: OSI Approved :: MIT License 2025-09-08T19:44:51,016 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:44:51,016 ******************************************************************************** 2025-09-08T19:44:51,016 !! 2025-09-08T19:44:51,016 self._finalize_license_expression() 2025-09-08T19:44:51,090 pw-slave-d13-04 2025-09-08T19:44:51,091 running egg_info 2025-09-08T19:44:51,165 creating /tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info 2025-09-08T19:44:51,165 writing /tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/PKG-INFO 2025-09-08T19:44:51,166 writing dependency_links to /tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/dependency_links.txt 2025-09-08T19:44:51,167 writing requirements to /tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/requires.txt 2025-09-08T19:44:51,167 writing top-level names to /tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/top_level.txt 2025-09-08T19:44:51,168 writing manifest file '/tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/SOURCES.txt' 2025-09-08T19:44:51,408 reading manifest file '/tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/SOURCES.txt' 2025-09-08T19:44:51,409 reading manifest template 'MANIFEST.in' 2025-09-08T19:44:51,416 writing manifest file '/tmp/pip-pip-egg-info-qychjg_m/frag_pele.egg-info/SOURCES.txt' 2025-09-08T19:44:51,557 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T19:44:51,562 Source in /tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32 has version 1.1.0, which satisfies requirement frag-pele==1.1.0 from https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz 2025-09-08T19:44:51,562 Removed frag-pele==1.1.0 from https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-6nmpnl2e' 2025-09-08T19:44:51,567 Created temporary directory: /tmp/pip-unpack-x8n6mau0 2025-09-08T19:44:51,567 Created temporary directory: /tmp/pip-unpack-d1c5918p 2025-09-08T19:44:51,567 Building wheels for collected packages: frag-pele 2025-09-08T19:44:51,568 Created temporary directory: /tmp/pip-wheel-3h7iqt5k 2025-09-08T19:44:51,569 DEPRECATION: Building 'frag-pele' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'frag-pele'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T19:44:51,570 Building wheel for frag-pele (setup.py): started 2025-09-08T19:44:51,571 Destination directory: /tmp/pip-wheel-3h7iqt5k 2025-09-08T19:44:51,571 Running command python setup.py bdist_wheel 2025-09-08T19:44:52,508 pw-slave-d13-04 2025-09-08T19:44:52,690 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:44:52,904 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:44:52,904 !! 2025-09-08T19:44:52,904 ******************************************************************************** 2025-09-08T19:44:52,904 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:44:52,904 License :: OSI Approved :: MIT License 2025-09-08T19:44:52,904 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:44:52,905 ******************************************************************************** 2025-09-08T19:44:52,905 !! 2025-09-08T19:44:52,905 self._finalize_license_expression() 2025-09-08T19:44:52,905 running bdist_wheel 2025-09-08T19:44:53,205 running build 2025-09-08T19:44:53,205 running build_py 2025-09-08T19:44:53,285 creating build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,286 copying frag_pele/serie_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,287 copying frag_pele/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,287 copying frag_pele/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,288 copying frag_pele/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,289 creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017 2025-09-08T19:44:53,289 copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017 2025-09-08T19:44:53,290 copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017 2025-09-08T19:44:53,290 copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017 2025-09-08T19:44:53,291 copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017 2025-09-08T19:44:53,292 creating build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,292 copying frag_pele/Helpers/templatize.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,293 copying frag_pele/Helpers/runner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,293 copying frag_pele/Helpers/helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,294 copying frag_pele/Helpers/folder_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,295 copying frag_pele/Helpers/correct_fragment_names.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,295 copying frag_pele/Helpers/constraints.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,296 copying frag_pele/Helpers/clusterizer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,296 copying frag_pele/Helpers/checker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,297 copying frag_pele/Helpers/check_constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,297 copying frag_pele/Helpers/center_of_mass.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,298 copying frag_pele/Helpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers 2025-09-08T19:44:53,298 creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,299 copying frag_pele/Growing/template_selector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,299 copying frag_pele/Growing/template_fragmenter.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,300 copying frag_pele/Growing/simulations_linker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,300 copying frag_pele/Growing/bestStructs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,301 copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,302 copying frag_pele/Growing/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing 2025-09-08T19:44:53,302 creating build/lib.linux-armv7l-cpython-313/frag_pele/Banner 2025-09-08T19:44:53,303 copying frag_pele/Banner/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner 2025-09-08T19:44:53,303 copying frag_pele/Banner/Detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner 2025-09-08T19:44:53,304 creating build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,304 copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,305 copying frag_pele/Analysis/rmsd_computer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,305 copying frag_pele/Analysis/output_files.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,306 copying frag_pele/Analysis/interaction_detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,306 copying frag_pele/Analysis/get_plots.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,307 copying frag_pele/Analysis/forcefield_analysis.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,308 copying frag_pele/Analysis/analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,308 copying frag_pele/Analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis 2025-09-08T19:44:53,309 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo 2025-09-08T19:44:53,309 copying frag_pele/AdaptivePELE_repo/setup.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo 2025-09-08T19:44:53,310 copying frag_pele/AdaptivePELE_repo/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo 2025-09-08T19:44:53,311 creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template 2025-09-08T19:44:53,311 copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template 2025-09-08T19:44:53,311 copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template 2025-09-08T19:44:53,312 copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template 2025-09-08T19:44:53,313 copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template 2025-09-08T19:44:53,313 creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing/add_fragment 2025-09-08T19:44:53,314 copying frag_pele/Growing/add_fragment/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/add_fragment 2025-09-08T19:44:53,314 creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers 2025-09-08T19:44:53,315 copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers 2025-09-08T19:44:53,315 copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers 2025-09-08T19:44:53,316 copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers 2025-09-08T19:44:53,317 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,317 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,317 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,318 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,319 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,319 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE 2025-09-08T19:44:53,320 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2025-09-08T19:44:53,320 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2025-09-08T19:44:53,321 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2025-09-08T19:44:53,321 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator 2025-09-08T19:44:53,322 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2025-09-08T19:44:53,322 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2025-09-08T19:44:53,323 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2025-09-08T19:44:53,324 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities 2025-09-08T19:44:53,324 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,325 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,325 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,326 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,326 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,327 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,327 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,328 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests 2025-09-08T19:44:53,329 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,329 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,330 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,330 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,331 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,331 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning 2025-09-08T19:44:53,332 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2025-09-08T19:44:53,332 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2025-09-08T19:44:53,333 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2025-09-08T19:44:53,334 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation 2025-09-08T19:44:53,335 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,335 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,335 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,336 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,337 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,337 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,338 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,338 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,339 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,339 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,340 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,340 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,341 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,341 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,342 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,343 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,343 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,344 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,345 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2025-09-08T19:44:53,345 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2025-09-08T19:44:53,345 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2025-09-08T19:44:53,346 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2025-09-08T19:44:53,346 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants 2025-09-08T19:44:53,347 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,347 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,348 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,349 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,349 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,350 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering 2025-09-08T19:44:53,351 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2025-09-08T19:44:53,351 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2025-09-08T19:44:53,352 creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,352 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,353 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,353 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,354 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,354 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,355 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,355 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,356 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,356 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,357 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,358 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,358 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,359 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,359 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,360 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,360 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,361 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,361 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,362 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,362 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,363 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,363 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis 2025-09-08T19:44:53,364 running egg_info 2025-09-08T19:44:53,440 writing frag_pele.egg-info/PKG-INFO 2025-09-08T19:44:53,441 writing dependency_links to frag_pele.egg-info/dependency_links.txt 2025-09-08T19:44:53,442 writing requirements to frag_pele.egg-info/requires.txt 2025-09-08T19:44:53,442 writing top-level names to frag_pele.egg-info/top_level.txt 2025-09-08T19:44:53,529 reading manifest file 'frag_pele.egg-info/SOURCES.txt' 2025-09-08T19:44:53,537 reading manifest template 'MANIFEST.in' 2025-09-08T19:44:53,545 writing manifest file 'frag_pele.egg-info/SOURCES.txt' 2025-09-08T19:44:53,548 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.PlopRotTemp_S_2017.param' is absent from the `packages` configuration. 2025-09-08T19:44:53,548 !! 2025-09-08T19:44:53,548 ******************************************************************************** 2025-09-08T19:44:53,548 ############################ 2025-09-08T19:44:53,548 # Package would be ignored # 2025-09-08T19:44:53,548 ############################ 2025-09-08T19:44:53,548 Python recognizes 'frag_pele.PlopRotTemp_S_2017.param' as an importable package[^1], 2025-09-08T19:44:53,549 but it is absent from setuptools' `packages` configuration. 2025-09-08T19:44:53,549 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T19:44:53,549 package, please make sure that 'frag_pele.PlopRotTemp_S_2017.param' is explicitly added 2025-09-08T19:44:53,549 to the `packages` configuration field. 2025-09-08T19:44:53,549 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T19:44:53,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T19:44:53,549 instead of `find_packages(...)`/`find:`). 2025-09-08T19:44:53,549 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T19:44:53,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T19:44:53,550 If you don't want 'frag_pele.PlopRotTemp_S_2017.param' to be distributed and are 2025-09-08T19:44:53,550 already explicitly excluding 'frag_pele.PlopRotTemp_S_2017.param' via 2025-09-08T19:44:53,550 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T19:44:53,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T19:44:53,550 combination with a more fine grained `package-data` configuration. 2025-09-08T19:44:53,550 You can read more about "package data files" on setuptools documentation page: 2025-09-08T19:44:53,551 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T19:44:53,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T19:44:53,551 even if it does not contain any `.py` files. 2025-09-08T19:44:53,551 On the other hand, currently there is no concept of package data 2025-09-08T19:44:53,551 directory, all directories are treated like packages. 2025-09-08T19:44:53,551 ******************************************************************************** 2025-09-08T19:44:53,551 !! 2025-09-08T19:44:53,551 check.warn(importable) 2025-09-08T19:44:53,552 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.Templates' is absent from the `packages` configuration. 2025-09-08T19:44:53,552 !! 2025-09-08T19:44:53,552 ******************************************************************************** 2025-09-08T19:44:53,552 ############################ 2025-09-08T19:44:53,552 # Package would be ignored # 2025-09-08T19:44:53,552 ############################ 2025-09-08T19:44:53,552 Python recognizes 'frag_pele.Templates' as an importable package[^1], 2025-09-08T19:44:53,552 but it is absent from setuptools' `packages` configuration. 2025-09-08T19:44:53,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T19:44:53,553 package, please make sure that 'frag_pele.Templates' is explicitly added 2025-09-08T19:44:53,553 to the `packages` configuration field. 2025-09-08T19:44:53,553 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T19:44:53,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T19:44:53,553 instead of `find_packages(...)`/`find:`). 2025-09-08T19:44:53,553 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T19:44:53,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T19:44:53,554 If you don't want 'frag_pele.Templates' to be distributed and are 2025-09-08T19:44:53,554 already explicitly excluding 'frag_pele.Templates' via 2025-09-08T19:44:53,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T19:44:53,554 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T19:44:53,554 combination with a more fine grained `package-data` configuration. 2025-09-08T19:44:53,554 You can read more about "package data files" on setuptools documentation page: 2025-09-08T19:44:53,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T19:44:53,555 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T19:44:53,555 even if it does not contain any `.py` files. 2025-09-08T19:44:53,555 On the other hand, currently there is no concept of package data 2025-09-08T19:44:53,555 directory, all directories are treated like packages. 2025-09-08T19:44:53,555 ******************************************************************************** 2025-09-08T19:44:53,555 !! 2025-09-08T19:44:53,555 check.warn(importable) 2025-09-08T19:44:53,555 copying frag_pele/log_configure.ini -> build/lib.linux-armv7l-cpython-313/frag_pele 2025-09-08T19:44:53,556 creating build/lib.linux-armv7l-cpython-313/frag_pele/Templates 2025-09-08T19:44:53,556 copying frag_pele/Templates/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates 2025-09-08T19:44:53,557 copying frag_pele/Templates/control_template.conf -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates 2025-09-08T19:44:53,557 creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,558 copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,558 copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,559 copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,560 copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,561 copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param 2025-09-08T19:44:53,561 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies 2025-09-08T19:44:53,562 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2025-09-08T19:44:53,562 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2025-09-08T19:44:53,563 copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset 2025-09-08T19:44:53,569 running build_ext 2025-09-08T19:44:54,006 Compiling frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx because it changed. 2025-09-08T19:44:54,007 [1/1] Cythonizing frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx 2025-09-08T19:44:54,856 Error compiling Cython file: 2025-09-08T19:44:54,856 ------------------------------------------------------------ 2025-09-08T19:44:54,856 ... 2025-09-08T19:44:54,856 def printAtom(self): 2025-09-08T19:44:54,856 """ 2025-09-08T19:44:54,856 Print Atom information 2025-09-08T19:44:54,857 """ 2025-09-08T19:44:54,857 print self.atomSerial, self.name, self.resname, self.resChain, self.resnum, self.x, self.y, self.z, self.type, self.mass 2025-09-08T19:44:54,857 ^ 2025-09-08T19:44:54,857 ------------------------------------------------------------ 2025-09-08T19:44:54,857 frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx:166:14: Syntax error in simple statement list 2025-09-08T19:44:54,865 Traceback (most recent call last): 2025-09-08T19:44:54,873 File "", line 2, in 2025-09-08T19:44:54,873 exec(compile(''' 2025-09-08T19:44:54,874 ~~~~^^^^^^^^^^^^ 2025-09-08T19:44:54,874 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:44:54,874 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:44:54,874 ...<32 lines>... 2025-09-08T19:44:54,874 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:44:54,874 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:44:54,874 ''' % ('/tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32/setup.py',), "", "exec")) 2025-09-08T19:44:54,874 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:44:54,874 File "", line 35, in 2025-09-08T19:44:54,875 File "/tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32/setup.py", line 121, in 2025-09-08T19:44:54,875 setup( 2025-09-08T19:44:54,875 ~~~~~^ 2025-09-08T19:44:54,875 name="frag_pele", 2025-09-08T19:44:54,875 ^^^^^^^^^^^^^^^^^ 2025-09-08T19:44:54,875 ...<27 lines>... 2025-09-08T19:44:54,875 }, 2025-09-08T19:44:54,875 ^^ 2025-09-08T19:44:54,875 ) 2025-09-08T19:44:54,876 ^ 2025-09-08T19:44:54,876 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T19:44:54,876 return distutils.core.setup(**attrs) 2025-09-08T19:44:54,876 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,876 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T19:44:54,876 return run_commands(dist) 2025-09-08T19:44:54,876 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T19:44:54,876 dist.run_commands() 2025-09-08T19:44:54,876 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:44:54,877 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T19:44:54,877 self.run_command(cmd) 2025-09-08T19:44:54,877 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:44:54,877 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:44:54,877 super().run_command(command) 2025-09-08T19:44:54,877 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,877 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:44:54,877 cmd_obj.run() 2025-09-08T19:44:54,877 ~~~~~~~~~~~^^ 2025-09-08T19:44:54,878 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T19:44:54,878 self.run_command("build") 2025-09-08T19:44:54,878 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,878 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:44:54,878 self.distribution.run_command(command) 2025-09-08T19:44:54,878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,878 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:44:54,878 super().run_command(command) 2025-09-08T19:44:54,878 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,879 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:44:54,879 cmd_obj.run() 2025-09-08T19:44:54,879 ~~~~~~~~~~~^^ 2025-09-08T19:44:54,879 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T19:44:54,879 self.run_command(cmd_name) 2025-09-08T19:44:54,879 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T19:44:54,879 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T19:44:54,879 self.distribution.run_command(command) 2025-09-08T19:44:54,879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,880 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T19:44:54,880 super().run_command(command) 2025-09-08T19:44:54,880 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T19:44:54,880 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T19:44:54,880 cmd_obj.run() 2025-09-08T19:44:54,880 ~~~~~~~~~~~^^ 2025-09-08T19:44:54,880 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T19:44:54,880 self.build_extensions() 2025-09-08T19:44:54,880 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:44:54,881 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T19:44:54,881 self._build_extensions_serial() 2025-09-08T19:44:54,881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T19:44:54,881 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T19:44:54,881 self.build_extension(ext) 2025-09-08T19:44:54,881 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T19:44:54,881 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T19:44:54,881 new_ext = cythonize( 2025-09-08T19:44:54,882 ~~~~~~~~~^ 2025-09-08T19:44:54,882 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T19:44:54,882 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T19:44:54,882 )[0] 2025-09-08T19:44:54,882 ^ 2025-09-08T19:44:54,882 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T19:44:54,882 cythonize_one(*args) 2025-09-08T19:44:54,882 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T19:44:54,882 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T19:44:54,883 raise CompileError(None, pyx_file) 2025-09-08T19:44:54,883 Cython.Compiler.Errors.CompileError: frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx 2025-09-08T19:44:55,154 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T19:44:55,166 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T19:44:55,166 exec(compile('"'"''"'"''"'"' 2025-09-08T19:44:55,166 # This is -- a caller that pip uses to run setup.py 2025-09-08T19:44:55,166 # 2025-09-08T19:44:55,166 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T19:44:55,166 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T19:44:55,166 # - It provides a clear error message when setuptools is not installed. 2025-09-08T19:44:55,166 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T19:44:55,166 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T19:44:55,166 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T19:44:55,166 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T19:44:55,166 import os, sys, tokenize, traceback 2025-09-08T19:44:55,166 2025-09-08T19:44:55,166 try: 2025-09-08T19:44:55,166 import setuptools 2025-09-08T19:44:55,166 except ImportError: 2025-09-08T19:44:55,166 print( 2025-09-08T19:44:55,166 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T19:44:55,166 "the build environment with exception:", 2025-09-08T19:44:55,166 file=sys.stderr, 2025-09-08T19:44:55,166 ) 2025-09-08T19:44:55,166 traceback.print_exc() 2025-09-08T19:44:55,166 sys.exit(1) 2025-09-08T19:44:55,166 2025-09-08T19:44:55,166 __file__ = %r 2025-09-08T19:44:55,166 sys.argv[0] = __file__ 2025-09-08T19:44:55,166 2025-09-08T19:44:55,166 if os.path.exists(__file__): 2025-09-08T19:44:55,166 filename = __file__ 2025-09-08T19:44:55,166 with tokenize.open(__file__) as f: 2025-09-08T19:44:55,166 setup_py_code = f.read() 2025-09-08T19:44:55,166 else: 2025-09-08T19:44:55,166 filename = "" 2025-09-08T19:44:55,166 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T19:44:55,166 2025-09-08T19:44:55,166 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T19:44:55,166 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-3h7iqt5k[/] 2025-09-08T19:44:55,166 [bold magenta]cwd[/]: /tmp/pip-wheel-sg9y7hsc/frag-pele_7656f1236a9f40d2879d4c23bfb51d32/ 2025-09-08T19:44:55,166 Building wheel for frag-pele (setup.py): finished with status 'error' 2025-09-08T19:44:55,167 ERROR: Failed building wheel for frag-pele 2025-09-08T19:44:55,168 Running setup.py clean for frag-pele 2025-09-08T19:44:55,168 Running command python setup.py clean 2025-09-08T19:44:56,099 pw-slave-d13-04 2025-09-08T19:44:56,277 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-08T19:44:56,490 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T19:44:56,490 !! 2025-09-08T19:44:56,491 ******************************************************************************** 2025-09-08T19:44:56,491 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T19:44:56,491 License :: OSI Approved :: MIT License 2025-09-08T19:44:56,491 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T19:44:56,491 ******************************************************************************** 2025-09-08T19:44:56,491 !! 2025-09-08T19:44:56,492 self._finalize_license_expression() 2025-09-08T19:44:56,567 running clean 2025-09-08T19:44:56,945 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T19:44:56,950 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T19:44:56,950 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T19:44:56,950 removing 'build' 2025-09-08T19:44:57,091 Failed to build frag-pele 2025-09-08T19:44:57,092 ERROR: Failed to build one or more wheels 2025-09-08T19:44:57,093 Exception information: 2025-09-08T19:44:57,093 Traceback (most recent call last): 2025-09-08T19:44:57,093 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T19:44:57,093 status = _inner_run() 2025-09-08T19:44:57,093 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T19:44:57,093 return self.run(options, args) 2025-09-08T19:44:57,093 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T19:44:57,093 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T19:44:57,093 return func(self, options, args) 2025-09-08T19:44:57,093 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T19:44:57,093 raise CommandError("Failed to build one or more wheels") 2025-09-08T19:44:57,093 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T19:44:57,097 Removed build tracker: '/tmp/pip-build-tracker-6nmpnl2e'