2025-09-08T19:44:55,533 Created temporary directory: /tmp/pip-build-tracker-v_1rr7tb
2025-09-08T19:44:55,533 Initialized build tracking at /tmp/pip-build-tracker-v_1rr7tb
2025-09-08T19:44:55,533 Created build tracker: /tmp/pip-build-tracker-v_1rr7tb
2025-09-08T19:44:55,534 Entered build tracker: /tmp/pip-build-tracker-v_1rr7tb
2025-09-08T19:44:55,534 Created temporary directory: /tmp/pip-wheel-i2j53rwg
2025-09-08T19:44:55,537 Created temporary directory: /tmp/pip-ephem-wheel-cache-lblrovob
2025-09-08T19:44:55,595 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T19:44:55,598 2 location(s) to search for versions of frag-pele:
2025-09-08T19:44:55,598 * https://pypi.org/simple/frag-pele/
2025-09-08T19:44:55,598 * https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:55,598 Fetching project page and analyzing links: https://pypi.org/simple/frag-pele/
2025-09-08T19:44:55,598 Getting page https://pypi.org/simple/frag-pele/
2025-09-08T19:44:55,599 Found index url https://pypi.org/simple/
2025-09-08T19:44:55,670 Fetched page https://pypi.org/simple/frag-pele/ as application/vnd.pypi.simple.v1+json
2025-09-08T19:44:55,673   Found link https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0
2025-09-08T19:44:55,673   Found link https://files.pythonhosted.org/packages/d0/f0/86387845e4a8f6e60d4a4c22522f839fc3beda80130663bd03382b28a1f4/frag_pele-1.1.0.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.1
2025-09-08T19:44:55,674   Found link https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.2
2025-09-08T19:44:55,674   Found link https://files.pythonhosted.org/packages/b5/51/ed7816753a4eeed924b5890507ebcfe9a413d63070b08ac248f683cefac2/frag_pele-1.1.0.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.3
2025-09-08T19:44:55,674   Found link https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.4
2025-09-08T19:44:55,674   Found link https://files.pythonhosted.org/packages/ed/d4/6648da9cb9257d09439502d43db14a4942c4d1dd35d40377d4ce46c3c466/frag_pele-2.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.1
2025-09-08T19:44:55,675   Found link https://files.pythonhosted.org/packages/ee/f5/0400b73f5f6be4e6fb5a1792db7698af6084f6930a9abeb89cb1535f1bdd/frag_pele-2.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.2
2025-09-08T19:44:55,675   Found link https://files.pythonhosted.org/packages/90/35/ace23ab99bc3e98a8269a3a3d33e8e717768ff6db75754077efd94323e16/frag_pele-2.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.3
2025-09-08T19:44:55,675   Found link https://files.pythonhosted.org/packages/79/a5/050e2ac47772096b1906f154e7c704d2e3d121823fe04772618f4e288289/frag_pele-2.2.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.2.1
2025-09-08T19:44:55,675   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/4a/93/046a93fe08f3f658c27530aadccb6b6e9e9a1cb25aae99d86940af5adce0/frag_pele-3.0.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,675   Found link https://files.pythonhosted.org/packages/33/76/a0f81fd6c76ea115357677bb529efebf25ae6b905c2bcccb17a2f6f1718b/frag_pele-3.0.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.0.0
2025-09-08T19:44:55,676   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/94/4c/1549b7349fec873e2c06fae6013fbcfcb2bd626e06d864b313d01d62d955/frag_pele-3.1.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,676   Found link https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.0
2025-09-08T19:44:55,676   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/16/15/e3132e52417b05a0c88ed42ea62498b2641052cf42e6a42b4d204754c9ae/frag_pele-3.1.1-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,676   Found link https://files.pythonhosted.org/packages/cc/2d/7ff1c9faf26cf8824380629807559002692ffef0b42dddbc1823b9abc521/frag_pele-3.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.1
2025-09-08T19:44:55,676   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/32/ad/92e938dfbde9c8a3d98125a92eddd37b260ab4ebc40746c048d03ad98318/frag_pele-3.1.2-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,677   Found link https://files.pythonhosted.org/packages/5a/ef/977fde423ae01b491519f8028f7e286848c51f01a3eefa51593996d91ceb/frag_pele-3.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.2
2025-09-08T19:44:55,677   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/ff/b0/1a7d694865bc6c8bb32d7d2693ae1b3bbe074ad5b6dad5cfdbb8b7fe076d/frag_pele-3.1.3-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,677   Found link https://files.pythonhosted.org/packages/bd/8b/8754c70b54071cc0e9b5c49ddf360d8278611f4b6a6b05a6162c9b7fb0a1/frag_pele-3.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.3
2025-09-08T19:44:55,677   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/99/96/e7c37c95b7b4ff38ace877bf34e7be992506223211463c3b3f4776286dfe/frag_pele-3.1.4-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:55,677   Found link https://files.pythonhosted.org/packages/69/06/36bcd297a916d4a0e2c35834e20e6a73415648428cb1417548e93fc7c846/frag_pele-3.1.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.4
2025-09-08T19:44:55,678 Fetching project page and analyzing links: https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:55,678 Getting page https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:55,679 Found index url https://www.piwheels.org/simple/
2025-09-08T19:44:55,780 Fetched page https://www.piwheels.org/simple/frag-pele/ as text/html
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.4-py3-none-any.whl#sha256=5a1a28229329dbf2a8d8143fb15600438667a5b0e9556c771a4532f4e5aa2b87 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.3-py3-none-any.whl#sha256=f90dd9e42465039b6c71ff6cbee5a10d12aa624692b3a90f567dbf6d0f7ba5fd (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.2-py3-none-any.whl#sha256=75868403d44d58091fd2ee6662e81489116cedf3da152a42ea37be4b02a2e040 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.1-py3-none-any.whl#sha256=a36f94ff40e24eb6335bebdcdb7dfdc7ccff725ccf542f2972162d336ea4458e (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.0-py3-none-any.whl#sha256=9455207f1075adb67362805e3a8593d2a670b5d0e3c593fed14264c0356faad7 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,786   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.0.0-py3-none-any.whl#sha256=1793462d15783e1f0cf560b62550e3dfd2d27b4ee54d8ad026a23114f0386b42 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.2.1-py3-none-any.whl#sha256=dac51d1ee2aae573ddceba053c9b3710c17dfad54dd9868508c09b2b78ef562b (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.3-py3-none-any.whl#sha256=6f92a9b1a982e5de58bb9ddad669b8bf101cb931228adc6af0490116f05c251d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.2-py3-none-any.whl#sha256=62b6da24477854ebf1cdaa132a0fc842846a7cf0537a57f8c5b495c9704e6e85 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.1-py3-none-any.whl#sha256=3cdd313a3e30f08a1ee8a11f0e8e77faac7f8fc7b5c59092751030c27dd488c7 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv6l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv7l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,787   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv7l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv6l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv7l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv6l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv6l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,788   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv7l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv7l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv6l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv7l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv6l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:55,789 Skipping link: not a file: https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:55,790 Skipping link: not a file: https://pypi.org/simple/frag-pele/
2025-09-08T19:44:55,816 Given no hashes to check 1 links for project 'frag-pele': discarding no candidates
2025-09-08T19:44:55,817 Collecting frag-pele==1.1.0.2
2025-09-08T19:44:55,818   Created temporary directory: /tmp/pip-unpack-owo0c3e4
2025-09-08T19:44:56,025   Downloading frag_pele-1.1.0.2.tar.gz (236 kB)
2025-09-08T19:44:56,172   Added frag-pele==1.1.0.2 from https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-v_1rr7tb'
2025-09-08T19:44:56,174   Running setup.py (path:/tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd/setup.py) egg_info for package frag-pele
2025-09-08T19:44:56,174   Created temporary directory: /tmp/pip-pip-egg-info-tw2cc1e9
2025-09-08T19:44:56,174   Preparing metadata (setup.py): started
2025-09-08T19:44:56,175   Running command python setup.py egg_info
2025-09-08T19:44:57,294   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:44:57,502   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:44:57,502   !!

2025-09-08T19:44:57,502           ********************************************************************************
2025-09-08T19:44:57,502           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:44:57,503           License :: OSI Approved :: MIT License

2025-09-08T19:44:57,503           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:44:57,503           ********************************************************************************

2025-09-08T19:44:57,503   !!
2025-09-08T19:44:57,503     self._finalize_license_expression()
2025-09-08T19:44:57,577   pw-slave-d13-14
2025-09-08T19:44:57,577   running egg_info
2025-09-08T19:44:57,650   creating /tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info
2025-09-08T19:44:57,650   writing /tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/PKG-INFO
2025-09-08T19:44:57,652   writing dependency_links to /tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/dependency_links.txt
2025-09-08T19:44:57,652   writing requirements to /tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/requires.txt
2025-09-08T19:44:57,653   writing top-level names to /tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/top_level.txt
2025-09-08T19:44:57,653   writing manifest file '/tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:44:57,904   reading manifest file '/tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:44:57,905   reading manifest template 'MANIFEST.in'
2025-09-08T19:44:57,912   writing manifest file '/tmp/pip-pip-egg-info-tw2cc1e9/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:44:58,054   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T19:44:58,059   Source in /tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd has version 1.1.0.2, which satisfies requirement frag-pele==1.1.0.2 from https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz
2025-09-08T19:44:58,059   Removed frag-pele==1.1.0.2 from https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-v_1rr7tb'
2025-09-08T19:44:58,063 Created temporary directory: /tmp/pip-unpack-fsxpzuet
2025-09-08T19:44:58,064 Created temporary directory: /tmp/pip-unpack-2z__5tkg
2025-09-08T19:44:58,064 Building wheels for collected packages: frag-pele
2025-09-08T19:44:58,065   Created temporary directory: /tmp/pip-wheel-9x7pxspq
2025-09-08T19:44:58,066   DEPRECATION: Building 'frag-pele' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'frag-pele'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T19:44:58,067   Building wheel for frag-pele (setup.py): started
2025-09-08T19:44:58,067   Destination directory: /tmp/pip-wheel-9x7pxspq
2025-09-08T19:44:58,067   Running command python setup.py bdist_wheel
2025-09-08T19:44:59,206   pw-slave-d13-14
2025-09-08T19:44:59,377   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:44:59,584   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:44:59,584   !!

2025-09-08T19:44:59,584           ********************************************************************************
2025-09-08T19:44:59,584           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:44:59,584           License :: OSI Approved :: MIT License

2025-09-08T19:44:59,584           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:44:59,584           ********************************************************************************

2025-09-08T19:44:59,585   !!
2025-09-08T19:44:59,585     self._finalize_license_expression()
2025-09-08T19:44:59,586   running bdist_wheel
2025-09-08T19:44:59,874   running build
2025-09-08T19:44:59,875   running build_py
2025-09-08T19:44:59,951   creating build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:44:59,952   copying frag_pele/serie_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:44:59,953   copying frag_pele/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:44:59,954   copying frag_pele/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:44:59,954   copying frag_pele/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:44:59,955   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:44:59,956   copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:44:59,957   copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:44:59,957   copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:44:59,958   copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:44:59,960   creating build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,960   copying frag_pele/Helpers/templatize.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,961   copying frag_pele/Helpers/runner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,962   copying frag_pele/Helpers/helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,963   copying frag_pele/Helpers/folder_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,964   copying frag_pele/Helpers/correct_fragment_names.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,965   copying frag_pele/Helpers/constraints.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,965   copying frag_pele/Helpers/clusterizer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,966   copying frag_pele/Helpers/checker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,967   copying frag_pele/Helpers/check_constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,968   copying frag_pele/Helpers/center_of_mass.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,968   copying frag_pele/Helpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:44:59,969   creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,970   copying frag_pele/Growing/template_selector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,970   copying frag_pele/Growing/template_fragmenter.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,971   copying frag_pele/Growing/simulations_linker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,972   copying frag_pele/Growing/bestStructs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,973   copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,973   copying frag_pele/Growing/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:44:59,974   creating build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:44:59,974   copying frag_pele/Banner/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:44:59,975   copying frag_pele/Banner/Detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:44:59,976   creating build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,976   copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,976   copying frag_pele/Analysis/rmsd_computer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,977   copying frag_pele/Analysis/output_files.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,978   copying frag_pele/Analysis/interaction_detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,978   copying frag_pele/Analysis/get_plots.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,979   copying frag_pele/Analysis/forcefield_analysis.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,979   copying frag_pele/Analysis/analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,980   copying frag_pele/Analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:44:59,980   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:44:59,981   copying frag_pele/AdaptivePELE_repo/setup.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:44:59,981   copying frag_pele/AdaptivePELE_repo/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:44:59,982   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:44:59,982   copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:44:59,983   copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:44:59,983   copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:44:59,984   copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:44:59,984   creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing/add_fragment
2025-09-08T19:44:59,985   copying frag_pele/Growing/add_fragment/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/add_fragment
2025-09-08T19:44:59,985   creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:44:59,986   copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:44:59,986   copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:44:59,987   copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:44:59,987   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,988   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,988   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,989   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,989   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,990   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:44:59,991   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:44:59,991   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:44:59,991   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:44:59,992   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:44:59,993   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:44:59,993   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:44:59,994   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:44:59,994   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:44:59,995   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,995   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,996   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,996   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,997   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,997   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,998   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,999   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:44:59,999   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,000   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,000   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,001   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,001   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,002   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:00,003   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:00,003   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:00,004   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:00,004   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:00,005   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,005   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,006   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,006   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,007   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,007   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,008   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,009   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,009   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,010   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,010   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,011   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,011   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,012   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,012   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,013   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,013   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,014   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,015   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:00,015   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:00,015   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:00,016   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:00,016   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:00,017   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,017   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,018   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,019   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,019   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,020   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:00,021   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:00,021   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:00,022   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,022   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,023   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,023   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,024   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,024   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,025   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,025   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,026   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,026   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,027   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,027   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,028   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,028   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,029   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,029   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,030   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,030   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,031   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,032   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,032   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,033   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,033   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:00,034   running egg_info
2025-09-08T19:45:00,106   writing frag_pele.egg-info/PKG-INFO
2025-09-08T19:45:00,107   writing dependency_links to frag_pele.egg-info/dependency_links.txt
2025-09-08T19:45:00,108   writing requirements to frag_pele.egg-info/requires.txt
2025-09-08T19:45:00,108   writing top-level names to frag_pele.egg-info/top_level.txt
2025-09-08T19:45:00,193   reading manifest file 'frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:00,202   reading manifest template 'MANIFEST.in'
2025-09-08T19:45:00,210   writing manifest file 'frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:00,212   /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.PlopRotTemp_S_2017.param' is absent from the `packages` configuration.
2025-09-08T19:45:00,213   !!

2025-09-08T19:45:00,213           ********************************************************************************
2025-09-08T19:45:00,213           ############################
2025-09-08T19:45:00,213           # Package would be ignored #
2025-09-08T19:45:00,213           ############################
2025-09-08T19:45:00,213           Python recognizes 'frag_pele.PlopRotTemp_S_2017.param' as an importable package[^1],
2025-09-08T19:45:00,213           but it is absent from setuptools' `packages` configuration.

2025-09-08T19:45:00,213           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-08T19:45:00,214           package, please make sure that 'frag_pele.PlopRotTemp_S_2017.param' is explicitly added
2025-09-08T19:45:00,214           to the `packages` configuration field.

2025-09-08T19:45:00,214           Alternatively, you can also rely on setuptools' discovery methods
2025-09-08T19:45:00,214           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-08T19:45:00,214           instead of `find_packages(...)`/`find:`).

2025-09-08T19:45:00,214           You can read more about "package discovery" on setuptools documentation page:

2025-09-08T19:45:00,214           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-08T19:45:00,215           If you don't want 'frag_pele.PlopRotTemp_S_2017.param' to be distributed and are
2025-09-08T19:45:00,215           already explicitly excluding 'frag_pele.PlopRotTemp_S_2017.param' via
2025-09-08T19:45:00,215           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-08T19:45:00,215           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-08T19:45:00,215           combination with a more fine grained `package-data` configuration.

2025-09-08T19:45:00,215           You can read more about "package data files" on setuptools documentation page:

2025-09-08T19:45:00,215           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-08T19:45:00,216           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-08T19:45:00,216                 even if it does not contain any `.py` files.
2025-09-08T19:45:00,216                 On the other hand, currently there is no concept of package data
2025-09-08T19:45:00,216                 directory, all directories are treated like packages.
2025-09-08T19:45:00,216           ********************************************************************************

2025-09-08T19:45:00,216   !!
2025-09-08T19:45:00,216     check.warn(importable)
2025-09-08T19:45:00,216   /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.Templates' is absent from the `packages` configuration.
2025-09-08T19:45:00,216   !!

2025-09-08T19:45:00,217           ********************************************************************************
2025-09-08T19:45:00,217           ############################
2025-09-08T19:45:00,217           # Package would be ignored #
2025-09-08T19:45:00,217           ############################
2025-09-08T19:45:00,217           Python recognizes 'frag_pele.Templates' as an importable package[^1],
2025-09-08T19:45:00,217           but it is absent from setuptools' `packages` configuration.

2025-09-08T19:45:00,217           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-08T19:45:00,217           package, please make sure that 'frag_pele.Templates' is explicitly added
2025-09-08T19:45:00,217           to the `packages` configuration field.

2025-09-08T19:45:00,217           Alternatively, you can also rely on setuptools' discovery methods
2025-09-08T19:45:00,218           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-08T19:45:00,218           instead of `find_packages(...)`/`find:`).

2025-09-08T19:45:00,218           You can read more about "package discovery" on setuptools documentation page:

2025-09-08T19:45:00,218           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-08T19:45:00,218           If you don't want 'frag_pele.Templates' to be distributed and are
2025-09-08T19:45:00,218           already explicitly excluding 'frag_pele.Templates' via
2025-09-08T19:45:00,218           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-08T19:45:00,218           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-08T19:45:00,218           combination with a more fine grained `package-data` configuration.

2025-09-08T19:45:00,219           You can read more about "package data files" on setuptools documentation page:

2025-09-08T19:45:00,219           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-08T19:45:00,219           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-08T19:45:00,219                 even if it does not contain any `.py` files.
2025-09-08T19:45:00,219                 On the other hand, currently there is no concept of package data
2025-09-08T19:45:00,219                 directory, all directories are treated like packages.
2025-09-08T19:45:00,219           ********************************************************************************

2025-09-08T19:45:00,220   !!
2025-09-08T19:45:00,220     check.warn(importable)
2025-09-08T19:45:00,220   copying frag_pele/log_configure.ini -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:00,220   creating build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:00,221   copying frag_pele/Templates/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:00,221   copying frag_pele/Templates/control_template.conf -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:00,222   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,222   copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,223   copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,224   copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,224   copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,225   copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:00,226   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:00,226   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:00,227   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:00,227   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:00,233   running build_ext
2025-09-08T19:45:00,667   Compiling frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx because it changed.
2025-09-08T19:45:00,667   [1/1] Cythonizing frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx

2025-09-08T19:45:01,521   Error compiling Cython file:
2025-09-08T19:45:01,521   ------------------------------------------------------------
2025-09-08T19:45:01,521   ...

2025-09-08T19:45:01,522       def printAtom(self):
2025-09-08T19:45:01,522           """
2025-09-08T19:45:01,522               Print Atom information
2025-09-08T19:45:01,522           """
2025-09-08T19:45:01,522           print self.atomSerial, self.name, self.resname, self.resChain, self.resnum, self.x, self.y, self.z, self.type, self.mass
2025-09-08T19:45:01,522                 ^
2025-09-08T19:45:01,522   ------------------------------------------------------------

2025-09-08T19:45:01,523   frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx:166:14: Syntax error in simple statement list
2025-09-08T19:45:01,531   Traceback (most recent call last):
2025-09-08T19:45:01,539     File "<string>", line 2, in <module>
2025-09-08T19:45:01,539       exec(compile('''
2025-09-08T19:45:01,539       ~~~~^^^^^^^^^^^^
2025-09-08T19:45:01,539       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T19:45:01,539       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:01,539       ...<32 lines>...
2025-09-08T19:45:01,539       exec(compile(setup_py_code, filename, "exec"))
2025-09-08T19:45:01,540       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:01,540       ''' % ('/tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-08T19:45:01,540       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:01,540     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-08T19:45:01,540     File "/tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd/setup.py", line 121, in <module>
2025-09-08T19:45:01,540       setup(
2025-09-08T19:45:01,540       ~~~~~^
2025-09-08T19:45:01,540           name="frag_pele",
2025-09-08T19:45:01,540           ^^^^^^^^^^^^^^^^^
2025-09-08T19:45:01,541       ...<26 lines>...
2025-09-08T19:45:01,541       },
2025-09-08T19:45:01,541       ^^
2025-09-08T19:45:01,541       )
2025-09-08T19:45:01,541       ^
2025-09-08T19:45:01,541     File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-08T19:45:01,541       return distutils.core.setup(**attrs)
2025-09-08T19:45:01,541              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,541     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-08T19:45:01,542       return run_commands(dist)
2025-09-08T19:45:01,542     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-08T19:45:01,542       dist.run_commands()
2025-09-08T19:45:01,542       ~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:01,542     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-08T19:45:01,542       self.run_command(cmd)
2025-09-08T19:45:01,542       ~~~~~~~~~~~~~~~~^^^^^
2025-09-08T19:45:01,542     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:01,543       super().run_command(command)
2025-09-08T19:45:01,543       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,543     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:01,543       cmd_obj.run()
2025-09-08T19:45:01,543       ~~~~~~~~~~~^^
2025-09-08T19:45:01,543     File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-08T19:45:01,543       self.run_command("build")
2025-09-08T19:45:01,543       ~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,543     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T19:45:01,543       self.distribution.run_command(command)
2025-09-08T19:45:01,544       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,544     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:01,544       super().run_command(command)
2025-09-08T19:45:01,544       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,544     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:01,544       cmd_obj.run()
2025-09-08T19:45:01,544       ~~~~~~~~~~~^^
2025-09-08T19:45:01,544     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-08T19:45:01,545       self.run_command(cmd_name)
2025-09-08T19:45:01,545       ~~~~~~~~~~~~~~~~^^^^^^^^^^
2025-09-08T19:45:01,545     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T19:45:01,545       self.distribution.run_command(command)
2025-09-08T19:45:01,545       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,545     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:01,545       super().run_command(command)
2025-09-08T19:45:01,545       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:01,545     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:01,546       cmd_obj.run()
2025-09-08T19:45:01,546       ~~~~~~~~~~~^^
2025-09-08T19:45:01,546     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run
2025-09-08T19:45:01,546       self.build_extensions()
2025-09-08T19:45:01,546       ~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:01,546     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions
2025-09-08T19:45:01,546       self._build_extensions_serial()
2025-09-08T19:45:01,546       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:01,546     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial
2025-09-08T19:45:01,547       self.build_extension(ext)
2025-09-08T19:45:01,547       ~~~~~~~~~~~~~~~~~~~~^^^^^
2025-09-08T19:45:01,547     File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension
2025-09-08T19:45:01,547       new_ext = cythonize(
2025-09-08T19:45:01,547                 ~~~~~~~~~^
2025-09-08T19:45:01,547           ext,force=self.force, quiet=self.verbose == 0, **options
2025-09-08T19:45:01,547           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:01,547       )[0]
2025-09-08T19:45:01,548       ^
2025-09-08T19:45:01,548     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
2025-09-08T19:45:01,548       cythonize_one(*args)
2025-09-08T19:45:01,548       ~~~~~~~~~~~~~^^^^^^^
2025-09-08T19:45:01,548     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one
2025-09-08T19:45:01,548       raise CompileError(None, pyx_file)
2025-09-08T19:45:01,548   Cython.Compiler.Errors.CompileError: frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx
2025-09-08T19:45:01,822   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T19:45:01,834   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T19:45:01,834   exec(compile('"'"''"'"''"'"'
2025-09-08T19:45:01,834   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T19:45:01,834   #
2025-09-08T19:45:01,834   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T19:45:01,834   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T19:45:01,834   # - It provides a clear error message when setuptools is not installed.
2025-09-08T19:45:01,834   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T19:45:01,834   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T19:45:01,834   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T19:45:01,834   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T19:45:01,834   import os, sys, tokenize, traceback
2025-09-08T19:45:01,834   
2025-09-08T19:45:01,834   try:
2025-09-08T19:45:01,834       import setuptools
2025-09-08T19:45:01,834   except ImportError:
2025-09-08T19:45:01,834       print(
2025-09-08T19:45:01,834           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T19:45:01,834           "the build environment with exception:",
2025-09-08T19:45:01,834           file=sys.stderr,
2025-09-08T19:45:01,834       )
2025-09-08T19:45:01,834       traceback.print_exc()
2025-09-08T19:45:01,834       sys.exit(1)
2025-09-08T19:45:01,834   
2025-09-08T19:45:01,834   __file__ = %r
2025-09-08T19:45:01,834   sys.argv[0] = __file__
2025-09-08T19:45:01,834   
2025-09-08T19:45:01,834   if os.path.exists(__file__):
2025-09-08T19:45:01,834       filename = __file__
2025-09-08T19:45:01,834       with tokenize.open(__file__) as f:
2025-09-08T19:45:01,834           setup_py_code = f.read()
2025-09-08T19:45:01,834   else:
2025-09-08T19:45:01,834       filename = "<auto-generated setuptools caller>"
2025-09-08T19:45:01,834       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T19:45:01,834   
2025-09-08T19:45:01,834   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T19:45:01,834   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-9x7pxspq[/]
2025-09-08T19:45:01,834   [bold magenta]cwd[/]: /tmp/pip-wheel-i2j53rwg/frag-pele_1e982434311d4dfc9ef686b46dce35dd/
2025-09-08T19:45:01,834   Building wheel for frag-pele (setup.py): finished with status 'error'
2025-09-08T19:45:01,835   ERROR: Failed building wheel for frag-pele
2025-09-08T19:45:01,836   Running setup.py clean for frag-pele
2025-09-08T19:45:01,837   Running command python setup.py clean
2025-09-08T19:45:02,744   pw-slave-d13-14
2025-09-08T19:45:02,916   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:45:03,119   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:45:03,119   !!

2025-09-08T19:45:03,119           ********************************************************************************
2025-09-08T19:45:03,119           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:45:03,120           License :: OSI Approved :: MIT License

2025-09-08T19:45:03,120           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:45:03,120           ********************************************************************************

2025-09-08T19:45:03,120   !!
2025-09-08T19:45:03,120     self._finalize_license_expression()
2025-09-08T19:45:03,196   running clean
2025-09-08T19:45:03,341   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T19:45:03,346   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T19:45:03,347   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T19:45:03,347   removing 'build'
2025-09-08T19:45:03,488 Failed to build frag-pele
2025-09-08T19:45:03,489 ERROR: Failed to build one or more wheels
2025-09-08T19:45:03,490 Exception information:
2025-09-08T19:45:03,490 Traceback (most recent call last):
2025-09-08T19:45:03,490   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T19:45:03,490     status = _inner_run()
2025-09-08T19:45:03,490   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T19:45:03,490     return self.run(options, args)
2025-09-08T19:45:03,490            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T19:45:03,490   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T19:45:03,490     return func(self, options, args)
2025-09-08T19:45:03,490   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T19:45:03,490     raise CommandError("Failed to build one or more wheels")
2025-09-08T19:45:03,490 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T19:45:03,494 Removed build tracker: '/tmp/pip-build-tracker-v_1rr7tb'