2025-09-08T19:44:58,658 Created temporary directory: /tmp/pip-build-tracker-ud8vwsct
2025-09-08T19:44:58,659 Initialized build tracking at /tmp/pip-build-tracker-ud8vwsct
2025-09-08T19:44:58,659 Created build tracker: /tmp/pip-build-tracker-ud8vwsct
2025-09-08T19:44:58,659 Entered build tracker: /tmp/pip-build-tracker-ud8vwsct
2025-09-08T19:44:58,659 Created temporary directory: /tmp/pip-wheel-395gvm8u
2025-09-08T19:44:58,663 Created temporary directory: /tmp/pip-ephem-wheel-cache-ny8x0p74
2025-09-08T19:44:58,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T19:44:58,734 2 location(s) to search for versions of frag-pele:
2025-09-08T19:44:58,734 * https://pypi.org/simple/frag-pele/
2025-09-08T19:44:58,734 * https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:58,734 Fetching project page and analyzing links: https://pypi.org/simple/frag-pele/
2025-09-08T19:44:58,735 Getting page https://pypi.org/simple/frag-pele/
2025-09-08T19:44:58,736 Found index url https://pypi.org/simple/
2025-09-08T19:44:58,809 Fetched page https://pypi.org/simple/frag-pele/ as application/vnd.pypi.simple.v1+json
2025-09-08T19:44:58,812   Found link https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0
2025-09-08T19:44:58,812   Found link https://files.pythonhosted.org/packages/d0/f0/86387845e4a8f6e60d4a4c22522f839fc3beda80130663bd03382b28a1f4/frag_pele-1.1.0.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.1
2025-09-08T19:44:58,813   Found link https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.2
2025-09-08T19:44:58,813   Found link https://files.pythonhosted.org/packages/b5/51/ed7816753a4eeed924b5890507ebcfe9a413d63070b08ac248f683cefac2/frag_pele-1.1.0.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.3
2025-09-08T19:44:58,813   Found link https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 1.1.0.4
2025-09-08T19:44:58,813   Found link https://files.pythonhosted.org/packages/ed/d4/6648da9cb9257d09439502d43db14a4942c4d1dd35d40377d4ce46c3c466/frag_pele-2.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.1
2025-09-08T19:44:58,814   Found link https://files.pythonhosted.org/packages/ee/f5/0400b73f5f6be4e6fb5a1792db7698af6084f6930a9abeb89cb1535f1bdd/frag_pele-2.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.2
2025-09-08T19:44:58,814   Found link https://files.pythonhosted.org/packages/90/35/ace23ab99bc3e98a8269a3a3d33e8e717768ff6db75754077efd94323e16/frag_pele-2.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.1.3
2025-09-08T19:44:58,814   Found link https://files.pythonhosted.org/packages/79/a5/050e2ac47772096b1906f154e7c704d2e3d121823fe04772618f4e288289/frag_pele-2.2.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 2.2.1
2025-09-08T19:44:58,814   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/4a/93/046a93fe08f3f658c27530aadccb6b6e9e9a1cb25aae99d86940af5adce0/frag_pele-3.0.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,814   Found link https://files.pythonhosted.org/packages/33/76/a0f81fd6c76ea115357677bb529efebf25ae6b905c2bcccb17a2f6f1718b/frag_pele-3.0.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.0.0
2025-09-08T19:44:58,814   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/94/4c/1549b7349fec873e2c06fae6013fbcfcb2bd626e06d864b313d01d62d955/frag_pele-3.1.0-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,815   Found link https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.0
2025-09-08T19:44:58,815   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/16/15/e3132e52417b05a0c88ed42ea62498b2641052cf42e6a42b4d204754c9ae/frag_pele-3.1.1-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,815   Found link https://files.pythonhosted.org/packages/cc/2d/7ff1c9faf26cf8824380629807559002692ffef0b42dddbc1823b9abc521/frag_pele-3.1.1.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.1
2025-09-08T19:44:58,815   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/32/ad/92e938dfbde9c8a3d98125a92eddd37b260ab4ebc40746c048d03ad98318/frag_pele-3.1.2-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,815   Found link https://files.pythonhosted.org/packages/5a/ef/977fde423ae01b491519f8028f7e286848c51f01a3eefa51593996d91ceb/frag_pele-3.1.2.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.2
2025-09-08T19:44:58,816   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/ff/b0/1a7d694865bc6c8bb32d7d2693ae1b3bbe074ad5b6dad5cfdbb8b7fe076d/frag_pele-3.1.3-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,816   Found link https://files.pythonhosted.org/packages/bd/8b/8754c70b54071cc0e9b5c49ddf360d8278611f4b6a6b05a6162c9b7fb0a1/frag_pele-3.1.3.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.3
2025-09-08T19:44:58,816   Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/99/96/e7c37c95b7b4ff38ace877bf34e7be992506223211463c3b3f4776286dfe/frag_pele-3.1.4-py3-none-any.whl (from https://pypi.org/simple/frag-pele/)
2025-09-08T19:44:58,816   Found link https://files.pythonhosted.org/packages/69/06/36bcd297a916d4a0e2c35834e20e6a73415648428cb1417548e93fc7c846/frag_pele-3.1.4.tar.gz (from https://pypi.org/simple/frag-pele/), version: 3.1.4
2025-09-08T19:44:58,816 Fetching project page and analyzing links: https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:58,817 Getting page https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:58,817 Found index url https://www.piwheels.org/simple/
2025-09-08T19:44:58,913 Fetched page https://www.piwheels.org/simple/frag-pele/ as text/html
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.4-py3-none-any.whl#sha256=5a1a28229329dbf2a8d8143fb15600438667a5b0e9556c771a4532f4e5aa2b87 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.3-py3-none-any.whl#sha256=f90dd9e42465039b6c71ff6cbee5a10d12aa624692b3a90f567dbf6d0f7ba5fd (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.2-py3-none-any.whl#sha256=75868403d44d58091fd2ee6662e81489116cedf3da152a42ea37be4b02a2e040 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.1-py3-none-any.whl#sha256=a36f94ff40e24eb6335bebdcdb7dfdc7ccff725ccf542f2972162d336ea4458e (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.1.0-py3-none-any.whl#sha256=9455207f1075adb67362805e3a8593d2a670b5d0e3c593fed14264c0356faad7 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,919   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-3.0.0-py3-none-any.whl#sha256=1793462d15783e1f0cf560b62550e3dfd2d27b4ee54d8ad026a23114f0386b42 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.2.1-py3-none-any.whl#sha256=dac51d1ee2aae573ddceba053c9b3710c17dfad54dd9868508c09b2b78ef562b (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.3-py3-none-any.whl#sha256=6f92a9b1a982e5de58bb9ddad669b8bf101cb931228adc6af0490116f05c251d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.2-py3-none-any.whl#sha256=62b6da24477854ebf1cdaa132a0fc842846a7cf0537a57f8c5b495c9704e6e85 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-2.1.1-py3-none-any.whl#sha256=3cdd313a3e30f08a1ee8a11f0e8e77faac7f8fc7b5c59092751030c27dd488c7 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv6l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp39-cp39-linux_armv7l.whl#sha256=fded52cf53bcd8944e76b691093e2fbd3f031d25dc750aa82083161a65b2c358 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,920   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv7l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp35-cp35m-linux_armv6l.whl#sha256=ecbc03d97775d35e2e7de4c4a50a95cf82132f1d9720ad35e939f4a4b81df1e1 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv7l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp34-cp34m-linux_armv6l.whl#sha256=d2a41b35404590d3eaaac367a1ae968b147a62bf0cf08f61b759c95da4f09824 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=c25edd25bda1a186feb908f0e3d69c70abbb71d27579bb61a4c9b8b9d909e58c (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv6l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp39-cp39-linux_armv7l.whl#sha256=63262fc334d8ad3a159032168f846626e7bf8813d7db00e2be5551fca184913d (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,921   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv7l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp34-cp34m-linux_armv6l.whl#sha256=6ae3a6312c856611ae9b7250efcbeac51812b52fda47ad11a2b7cfd42cf34078 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv7l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp35-cp35m-linux_armv6l.whl#sha256=956dc65e7b2172f4d87591bbdda984a3c93fadffe2c39699b770702f9e6c7df4 (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922   Skipping link: No binaries permitted for frag-pele: https://archive1.piwheels.org/simple/frag-pele/frag_pele-1.1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=df4eebeb3a3755b2931d10bc8550eee5cde15b72829fcad88ffef825bdcaa47a (from https://www.piwheels.org/simple/frag-pele/)
2025-09-08T19:44:58,922 Skipping link: not a file: https://www.piwheels.org/simple/frag-pele/
2025-09-08T19:44:58,922 Skipping link: not a file: https://pypi.org/simple/frag-pele/
2025-09-08T19:44:58,946 Given no hashes to check 1 links for project 'frag-pele': discarding no candidates
2025-09-08T19:44:58,947 Collecting frag-pele==1.1.0.4
2025-09-08T19:44:58,949   Created temporary directory: /tmp/pip-unpack-rfonxnky
2025-09-08T19:44:59,088   Downloading frag_pele-1.1.0.4.tar.gz (236 kB)
2025-09-08T19:44:59,238   Added frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-ud8vwsct'
2025-09-08T19:44:59,239   Running setup.py (path:/tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f/setup.py) egg_info for package frag-pele
2025-09-08T19:44:59,239   Created temporary directory: /tmp/pip-pip-egg-info-22g61_es
2025-09-08T19:44:59,239   Preparing metadata (setup.py): started
2025-09-08T19:44:59,240   Running command python setup.py egg_info
2025-09-08T19:45:00,388   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:45:00,596   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:45:00,597   !!

2025-09-08T19:45:00,597           ********************************************************************************
2025-09-08T19:45:00,597           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:45:00,597           License :: OSI Approved :: MIT License

2025-09-08T19:45:00,597           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:45:00,597           ********************************************************************************

2025-09-08T19:45:00,598   !!
2025-09-08T19:45:00,598     self._finalize_license_expression()
2025-09-08T19:45:00,671   pw-slave-d13-12
2025-09-08T19:45:00,671   running egg_info
2025-09-08T19:45:00,746   creating /tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info
2025-09-08T19:45:00,746   writing /tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/PKG-INFO
2025-09-08T19:45:00,747   writing dependency_links to /tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/dependency_links.txt
2025-09-08T19:45:00,748   writing requirements to /tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/requires.txt
2025-09-08T19:45:00,748   writing top-level names to /tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/top_level.txt
2025-09-08T19:45:00,748   writing manifest file '/tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:00,988   reading manifest file '/tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:00,989   reading manifest template 'MANIFEST.in'
2025-09-08T19:45:00,997   writing manifest file '/tmp/pip-pip-egg-info-22g61_es/frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:01,139   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T19:45:01,143   Source in /tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f has version 1.1.0.4, which satisfies requirement frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz
2025-09-08T19:45:01,144   Removed frag-pele==1.1.0.4 from https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-ud8vwsct'
2025-09-08T19:45:01,148 Created temporary directory: /tmp/pip-unpack-hayue3ok
2025-09-08T19:45:01,148 Created temporary directory: /tmp/pip-unpack-4ae5zcq7
2025-09-08T19:45:01,148 Building wheels for collected packages: frag-pele
2025-09-08T19:45:01,150   Created temporary directory: /tmp/pip-wheel-vbwattu_
2025-09-08T19:45:01,150   DEPRECATION: Building 'frag-pele' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'frag-pele'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T19:45:01,151   Building wheel for frag-pele (setup.py): started
2025-09-08T19:45:01,152   Destination directory: /tmp/pip-wheel-vbwattu_
2025-09-08T19:45:01,152   Running command python setup.py bdist_wheel
2025-09-08T19:45:02,084   pw-slave-d13-12
2025-09-08T19:45:02,262   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:45:02,470   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:45:02,471   !!

2025-09-08T19:45:02,471           ********************************************************************************
2025-09-08T19:45:02,471           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:45:02,471           License :: OSI Approved :: MIT License

2025-09-08T19:45:02,471           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:45:02,471           ********************************************************************************

2025-09-08T19:45:02,471   !!
2025-09-08T19:45:02,472     self._finalize_license_expression()
2025-09-08T19:45:02,472   running bdist_wheel
2025-09-08T19:45:02,769   running build
2025-09-08T19:45:02,770   running build_py
2025-09-08T19:45:02,849   creating build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:02,850   copying frag_pele/serie_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:02,851   copying frag_pele/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:02,851   copying frag_pele/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:02,852   copying frag_pele/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:02,853   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:45:02,853   copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:45:02,853   copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:45:02,854   copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:45:02,854   copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017
2025-09-08T19:45:02,856   creating build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,856   copying frag_pele/Helpers/templatize.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,857   copying frag_pele/Helpers/runner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,857   copying frag_pele/Helpers/helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,858   copying frag_pele/Helpers/folder_handler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,858   copying frag_pele/Helpers/correct_fragment_names.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,859   copying frag_pele/Helpers/constraints.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,859   copying frag_pele/Helpers/clusterizer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,860   copying frag_pele/Helpers/checker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,860   copying frag_pele/Helpers/check_constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,861   copying frag_pele/Helpers/center_of_mass.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,861   copying frag_pele/Helpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Helpers
2025-09-08T19:45:02,862   creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,862   copying frag_pele/Growing/template_selector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,863   copying frag_pele/Growing/template_fragmenter.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,864   copying frag_pele/Growing/simulations_linker.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,864   copying frag_pele/Growing/bestStructs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,865   copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,865   copying frag_pele/Growing/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing
2025-09-08T19:45:02,866   creating build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:45:02,866   copying frag_pele/Banner/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:45:02,867   copying frag_pele/Banner/Detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Banner
2025-09-08T19:45:02,868   creating build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,868   copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,868   copying frag_pele/Analysis/rmsd_computer.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,869   copying frag_pele/Analysis/output_files.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,869   copying frag_pele/Analysis/interaction_detector.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,870   copying frag_pele/Analysis/get_plots.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,871   copying frag_pele/Analysis/forcefield_analysis.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,871   copying frag_pele/Analysis/analyser.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,872   copying frag_pele/Analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Analysis
2025-09-08T19:45:02,872   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:45:02,873   copying frag_pele/AdaptivePELE_repo/setup.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:45:02,873   copying frag_pele/AdaptivePELE_repo/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo
2025-09-08T19:45:02,874   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:45:02,874   copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:45:02,875   copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:45:02,875   copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:45:02,876   copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/template
2025-09-08T19:45:02,877   creating build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:45:02,877   copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:45:02,877   copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:45:02,878   copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Growing/AddingFragHelpers
2025-09-08T19:45:02,879   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,879   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,880   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,880   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,881   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,881   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE
2025-09-08T19:45:02,882   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:45:02,882   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:45:02,883   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:45:02,883   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/validator
2025-09-08T19:45:02,884   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:45:02,884   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:45:02,885   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:45:02,885   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities
2025-09-08T19:45:02,886   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,886   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,887   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,887   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,888   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,889   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,889   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,890   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/tests
2025-09-08T19:45:02,891   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,891   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,891   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,892   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,893   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,893   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning
2025-09-08T19:45:02,894   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:02,894   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:02,895   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:02,895   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation
2025-09-08T19:45:02,896   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,897   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,897   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,898   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,898   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,899   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,899   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,900   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,901   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,901   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,902   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,902   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,903   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,903   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,904   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,904   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,905   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,905   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:02,906   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:02,906   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:02,907   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:02,907   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:02,908   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/constants
2025-09-08T19:45:02,909   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,909   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,910   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,910   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,911   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,911   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering
2025-09-08T19:45:02,912   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:02,912   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:02,913   creating build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,914   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,914   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,915   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,915   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,916   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,916   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,917   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,917   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,918   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,918   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,919   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,919   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,920   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,921   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,921   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,922   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,922   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,923   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,923   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,924   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,924   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,925   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis
2025-09-08T19:45:02,925   running egg_info
2025-09-08T19:45:03,000   writing frag_pele.egg-info/PKG-INFO
2025-09-08T19:45:03,002   writing dependency_links to frag_pele.egg-info/dependency_links.txt
2025-09-08T19:45:03,002   writing requirements to frag_pele.egg-info/requires.txt
2025-09-08T19:45:03,003   writing top-level names to frag_pele.egg-info/top_level.txt
2025-09-08T19:45:03,090   reading manifest file 'frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:03,098   reading manifest template 'MANIFEST.in'
2025-09-08T19:45:03,107   writing manifest file 'frag_pele.egg-info/SOURCES.txt'
2025-09-08T19:45:03,109   /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.PlopRotTemp_S_2017.param' is absent from the `packages` configuration.
2025-09-08T19:45:03,109   !!

2025-09-08T19:45:03,110           ********************************************************************************
2025-09-08T19:45:03,110           ############################
2025-09-08T19:45:03,110           # Package would be ignored #
2025-09-08T19:45:03,110           ############################
2025-09-08T19:45:03,110           Python recognizes 'frag_pele.PlopRotTemp_S_2017.param' as an importable package[^1],
2025-09-08T19:45:03,110           but it is absent from setuptools' `packages` configuration.

2025-09-08T19:45:03,110           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-08T19:45:03,110           package, please make sure that 'frag_pele.PlopRotTemp_S_2017.param' is explicitly added
2025-09-08T19:45:03,110           to the `packages` configuration field.

2025-09-08T19:45:03,111           Alternatively, you can also rely on setuptools' discovery methods
2025-09-08T19:45:03,111           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-08T19:45:03,111           instead of `find_packages(...)`/`find:`).

2025-09-08T19:45:03,111           You can read more about "package discovery" on setuptools documentation page:

2025-09-08T19:45:03,111           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-08T19:45:03,111           If you don't want 'frag_pele.PlopRotTemp_S_2017.param' to be distributed and are
2025-09-08T19:45:03,111           already explicitly excluding 'frag_pele.PlopRotTemp_S_2017.param' via
2025-09-08T19:45:03,112           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-08T19:45:03,112           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-08T19:45:03,112           combination with a more fine grained `package-data` configuration.

2025-09-08T19:45:03,112           You can read more about "package data files" on setuptools documentation page:

2025-09-08T19:45:03,112           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-08T19:45:03,112           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-08T19:45:03,112                 even if it does not contain any `.py` files.
2025-09-08T19:45:03,113                 On the other hand, currently there is no concept of package data
2025-09-08T19:45:03,113                 directory, all directories are treated like packages.
2025-09-08T19:45:03,113           ********************************************************************************

2025-09-08T19:45:03,113   !!
2025-09-08T19:45:03,113     check.warn(importable)
2025-09-08T19:45:03,113   /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'frag_pele.Templates' is absent from the `packages` configuration.
2025-09-08T19:45:03,113   !!

2025-09-08T19:45:03,113           ********************************************************************************
2025-09-08T19:45:03,113           ############################
2025-09-08T19:45:03,114           # Package would be ignored #
2025-09-08T19:45:03,114           ############################
2025-09-08T19:45:03,114           Python recognizes 'frag_pele.Templates' as an importable package[^1],
2025-09-08T19:45:03,114           but it is absent from setuptools' `packages` configuration.

2025-09-08T19:45:03,114           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-08T19:45:03,114           package, please make sure that 'frag_pele.Templates' is explicitly added
2025-09-08T19:45:03,114           to the `packages` configuration field.

2025-09-08T19:45:03,114           Alternatively, you can also rely on setuptools' discovery methods
2025-09-08T19:45:03,114           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-08T19:45:03,115           instead of `find_packages(...)`/`find:`).

2025-09-08T19:45:03,115           You can read more about "package discovery" on setuptools documentation page:

2025-09-08T19:45:03,115           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-08T19:45:03,115           If you don't want 'frag_pele.Templates' to be distributed and are
2025-09-08T19:45:03,115           already explicitly excluding 'frag_pele.Templates' via
2025-09-08T19:45:03,115           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-08T19:45:03,115           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-08T19:45:03,115           combination with a more fine grained `package-data` configuration.

2025-09-08T19:45:03,116           You can read more about "package data files" on setuptools documentation page:

2025-09-08T19:45:03,116           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-08T19:45:03,116           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-08T19:45:03,116                 even if it does not contain any `.py` files.
2025-09-08T19:45:03,116                 On the other hand, currently there is no concept of package data
2025-09-08T19:45:03,116                 directory, all directories are treated like packages.
2025-09-08T19:45:03,116           ********************************************************************************

2025-09-08T19:45:03,117   !!
2025-09-08T19:45:03,117     check.warn(importable)
2025-09-08T19:45:03,117   copying frag_pele/log_configure.ini -> build/lib.linux-armv7l-cpython-313/frag_pele
2025-09-08T19:45:03,117   creating build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:03,118   copying frag_pele/Templates/constants.py -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:03,118   copying frag_pele/Templates/control_template.conf -> build/lib.linux-armv7l-cpython-313/frag_pele/Templates
2025-09-08T19:45:03,119   creating build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,119   copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,120   copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,121   copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,121   copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,122   copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib.linux-armv7l-cpython-313/frag_pele/PlopRotTemp_S_2017/param
2025-09-08T19:45:03,123   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies
2025-09-08T19:45:03,123   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,124   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,124   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,125   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,125   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,126   copying frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx -> build/lib.linux-armv7l-cpython-313/frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset
2025-09-08T19:45:03,132   running build_ext
2025-09-08T19:45:03,575   Compiling frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx because it changed.
2025-09-08T19:45:03,575   [1/1] Cythonizing frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx

2025-09-08T19:45:04,426   Error compiling Cython file:
2025-09-08T19:45:04,427   ------------------------------------------------------------
2025-09-08T19:45:04,427   ...

2025-09-08T19:45:04,427       def printAtom(self):
2025-09-08T19:45:04,427           """
2025-09-08T19:45:04,427               Print Atom information
2025-09-08T19:45:04,427           """
2025-09-08T19:45:04,427           print self.atomSerial, self.name, self.resname, self.resChain, self.resnum, self.x, self.y, self.z, self.type, self.mass
2025-09-08T19:45:04,427                 ^
2025-09-08T19:45:04,427   ------------------------------------------------------------

2025-09-08T19:45:04,428   frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx:166:14: Syntax error in simple statement list
2025-09-08T19:45:04,436   Traceback (most recent call last):
2025-09-08T19:45:04,444     File "<string>", line 2, in <module>
2025-09-08T19:45:04,444       exec(compile('''
2025-09-08T19:45:04,444       ~~~~^^^^^^^^^^^^
2025-09-08T19:45:04,444       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T19:45:04,444       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:04,444       ...<32 lines>...
2025-09-08T19:45:04,444       exec(compile(setup_py_code, filename, "exec"))
2025-09-08T19:45:04,444       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:04,445       ''' % ('/tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-08T19:45:04,445       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:04,445     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-08T19:45:04,445     File "/tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f/setup.py", line 121, in <module>
2025-09-08T19:45:04,445       setup(
2025-09-08T19:45:04,445       ~~~~~^
2025-09-08T19:45:04,445           name="frag_pele",
2025-09-08T19:45:04,445           ^^^^^^^^^^^^^^^^^
2025-09-08T19:45:04,446       ...<26 lines>...
2025-09-08T19:45:04,446       },
2025-09-08T19:45:04,446       ^^
2025-09-08T19:45:04,446       )
2025-09-08T19:45:04,446       ^
2025-09-08T19:45:04,446     File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-08T19:45:04,446       return distutils.core.setup(**attrs)
2025-09-08T19:45:04,446              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,446     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-08T19:45:04,447       return run_commands(dist)
2025-09-08T19:45:04,447     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-08T19:45:04,447       dist.run_commands()
2025-09-08T19:45:04,447       ~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:04,447     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-08T19:45:04,447       self.run_command(cmd)
2025-09-08T19:45:04,447       ~~~~~~~~~~~~~~~~^^^^^
2025-09-08T19:45:04,447     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:04,447       super().run_command(command)
2025-09-08T19:45:04,448       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,448     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:04,448       cmd_obj.run()
2025-09-08T19:45:04,448       ~~~~~~~~~~~^^
2025-09-08T19:45:04,448     File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-08T19:45:04,448       self.run_command("build")
2025-09-08T19:45:04,448       ~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,448     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T19:45:04,448       self.distribution.run_command(command)
2025-09-08T19:45:04,449       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,449     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:04,449       super().run_command(command)
2025-09-08T19:45:04,449       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,449     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:04,449       cmd_obj.run()
2025-09-08T19:45:04,449       ~~~~~~~~~~~^^
2025-09-08T19:45:04,449     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-08T19:45:04,450       self.run_command(cmd_name)
2025-09-08T19:45:04,450       ~~~~~~~~~~~~~~~~^^^^^^^^^^
2025-09-08T19:45:04,450     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T19:45:04,450       self.distribution.run_command(command)
2025-09-08T19:45:04,450       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,450     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T19:45:04,450       super().run_command(command)
2025-09-08T19:45:04,450       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T19:45:04,451     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T19:45:04,451       cmd_obj.run()
2025-09-08T19:45:04,451       ~~~~~~~~~~~^^
2025-09-08T19:45:04,451     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run
2025-09-08T19:45:04,451       self.build_extensions()
2025-09-08T19:45:04,451       ~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:04,451     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions
2025-09-08T19:45:04,451       self._build_extensions_serial()
2025-09-08T19:45:04,452       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T19:45:04,452     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial
2025-09-08T19:45:04,452       self.build_extension(ext)
2025-09-08T19:45:04,452       ~~~~~~~~~~~~~~~~~~~~^^^^^
2025-09-08T19:45:04,452     File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension
2025-09-08T19:45:04,452       new_ext = cythonize(
2025-09-08T19:45:04,452                 ~~~~~~~~~^
2025-09-08T19:45:04,452           ext,force=self.force, quiet=self.verbose == 0, **options
2025-09-08T19:45:04,453           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T19:45:04,453       )[0]
2025-09-08T19:45:04,453       ^
2025-09-08T19:45:04,453     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
2025-09-08T19:45:04,453       cythonize_one(*args)
2025-09-08T19:45:04,453       ~~~~~~~~~~~~~^^^^^^^
2025-09-08T19:45:04,453     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one
2025-09-08T19:45:04,453       raise CompileError(None, pyx_file)
2025-09-08T19:45:04,453   Cython.Compiler.Errors.CompileError: frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx
2025-09-08T19:45:04,727   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T19:45:04,738   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T19:45:04,738   exec(compile('"'"''"'"''"'"'
2025-09-08T19:45:04,738   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T19:45:04,738   #
2025-09-08T19:45:04,738   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T19:45:04,738   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T19:45:04,738   # - It provides a clear error message when setuptools is not installed.
2025-09-08T19:45:04,738   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T19:45:04,738   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T19:45:04,738   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T19:45:04,738   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T19:45:04,738   import os, sys, tokenize, traceback
2025-09-08T19:45:04,738   
2025-09-08T19:45:04,738   try:
2025-09-08T19:45:04,738       import setuptools
2025-09-08T19:45:04,738   except ImportError:
2025-09-08T19:45:04,738       print(
2025-09-08T19:45:04,738           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T19:45:04,738           "the build environment with exception:",
2025-09-08T19:45:04,738           file=sys.stderr,
2025-09-08T19:45:04,738       )
2025-09-08T19:45:04,738       traceback.print_exc()
2025-09-08T19:45:04,738       sys.exit(1)
2025-09-08T19:45:04,738   
2025-09-08T19:45:04,738   __file__ = %r
2025-09-08T19:45:04,738   sys.argv[0] = __file__
2025-09-08T19:45:04,738   
2025-09-08T19:45:04,738   if os.path.exists(__file__):
2025-09-08T19:45:04,738       filename = __file__
2025-09-08T19:45:04,738       with tokenize.open(__file__) as f:
2025-09-08T19:45:04,738           setup_py_code = f.read()
2025-09-08T19:45:04,738   else:
2025-09-08T19:45:04,738       filename = "<auto-generated setuptools caller>"
2025-09-08T19:45:04,738       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T19:45:04,738   
2025-09-08T19:45:04,738   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T19:45:04,738   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-vbwattu_[/]
2025-09-08T19:45:04,738   [bold magenta]cwd[/]: /tmp/pip-wheel-395gvm8u/frag-pele_f5166d07278a482380522e51469edf5f/
2025-09-08T19:45:04,739   Building wheel for frag-pele (setup.py): finished with status 'error'
2025-09-08T19:45:04,739   ERROR: Failed building wheel for frag-pele
2025-09-08T19:45:04,740   Running setup.py clean for frag-pele
2025-09-08T19:45:04,741   Running command python setup.py clean
2025-09-08T19:45:05,671   pw-slave-d13-12
2025-09-08T19:45:05,843   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-08T19:45:06,049   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T19:45:06,049   !!

2025-09-08T19:45:06,049           ********************************************************************************
2025-09-08T19:45:06,049           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T19:45:06,050           License :: OSI Approved :: MIT License

2025-09-08T19:45:06,050           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T19:45:06,050           ********************************************************************************

2025-09-08T19:45:06,050   !!
2025-09-08T19:45:06,050     self._finalize_license_expression()
2025-09-08T19:45:06,122   running clean
2025-09-08T19:45:06,267   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T19:45:06,273   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T19:45:06,273   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T19:45:06,273   removing 'build'
2025-09-08T19:45:06,414 Failed to build frag-pele
2025-09-08T19:45:06,415 ERROR: Failed to build one or more wheels
2025-09-08T19:45:06,416 Exception information:
2025-09-08T19:45:06,416 Traceback (most recent call last):
2025-09-08T19:45:06,416   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T19:45:06,416     status = _inner_run()
2025-09-08T19:45:06,416   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T19:45:06,416     return self.run(options, args)
2025-09-08T19:45:06,416            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T19:45:06,416   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T19:45:06,416     return func(self, options, args)
2025-09-08T19:45:06,416   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T19:45:06,416     raise CommandError("Failed to build one or more wheels")
2025-09-08T19:45:06,416 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T19:45:06,420 Removed build tracker: '/tmp/pip-build-tracker-ud8vwsct'