2025-09-08T19:50:57,253 Created temporary directory: /tmp/pip-build-tracker-bc1cgy_v
2025-09-08T19:50:57,254 Initialized build tracking at /tmp/pip-build-tracker-bc1cgy_v
2025-09-08T19:50:57,254 Created build tracker: /tmp/pip-build-tracker-bc1cgy_v
2025-09-08T19:50:57,254 Entered build tracker: /tmp/pip-build-tracker-bc1cgy_v
2025-09-08T19:50:57,254 Created temporary directory: /tmp/pip-wheel-53g5y6uw
2025-09-08T19:50:57,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-5hwaotiq
2025-09-08T19:50:57,321 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T19:50:57,324 2 location(s) to search for versions of py-popgen:
2025-09-08T19:50:57,324 * https://pypi.org/simple/py-popgen/
2025-09-08T19:50:57,324 * https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:50:57,324 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2025-09-08T19:50:57,324 Getting page https://pypi.org/simple/py-popgen/
2025-09-08T19:50:57,325 Found index url https://pypi.org/simple/
2025-09-08T19:50:57,473 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2025-09-08T19:50:57,478   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2025-09-08T19:50:57,479   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2025-09-08T19:50:57,483   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2025-09-08T19:50:57,484   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2025-09-08T19:50:57,484   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2025-09-08T19:50:57,485   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2025-09-08T19:50:57,485   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2025-09-08T19:50:57,486   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2025-09-08T19:50:57,486   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2025-09-08T19:50:57,487   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2025-09-08T19:50:57,487   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,488   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2025-09-08T19:50:57,488   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,489   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2025-09-08T19:50:57,489   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,490   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,490   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2025-09-08T19:50:57,490   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,491   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2025-09-08T19:50:57,491   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,492   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2025-09-08T19:50:57,492 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:50:57,493 Getting page https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:50:57,495 Found index url https://www.piwheels.org/simple/
2025-09-08T19:50:57,578 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2025-09-08T19:50:57,587   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,587   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,588   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp311-cp311-linux_armv6l.whl#sha256=07620288fb87adf38d806db0782f4b4d78a4bfdc9cf3af5c84c2683dd7351d6d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp311-cp311-linux_armv7l.whl#sha256=07620288fb87adf38d806db0782f4b4d78a4bfdc9cf3af5c84c2683dd7351d6d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,589   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv6l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv7l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,590   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,591   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,592   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv6l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,592   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv7l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:50:57,592   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2025-09-08T19:50:57,592   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2025-09-08T19:50:57,592 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:50:57,592 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2025-09-08T19:50:57,617 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2025-09-08T19:50:57,618 Collecting py-popgen==0.1
2025-09-08T19:50:57,619   Created temporary directory: /tmp/pip-unpack-r0o50ehj
2025-09-08T19:50:57,771   Downloading py-popgen-0.1.tar.gz (27.2 MB)
2025-09-08T19:51:02,360   Added py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-bc1cgy_v'
2025-09-08T19:51:02,361   Running setup.py (path:/tmp/pip-wheel-53g5y6uw/py-popgen_f1e9e9c664b14b66b06198eb870b3e74/setup.py) egg_info for package py-popgen
2025-09-08T19:51:02,361   Created temporary directory: /tmp/pip-pip-egg-info-koea8wvy
2025-09-08T19:51:02,362   Preparing metadata (setup.py): started
2025-09-08T19:51:02,362   Running command python setup.py egg_info
2025-09-08T19:51:04,445   Compiling pgpipe/test_cython.pyx because it changed.
2025-09-08T19:51:04,445   [1/1] Cythonizing pgpipe/test_cython.pyx
2025-09-08T19:51:04,941   running egg_info
2025-09-08T19:51:05,017   creating /tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info
2025-09-08T19:51:05,017   writing /tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/PKG-INFO
2025-09-08T19:51:05,019   writing dependency_links to /tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/dependency_links.txt
2025-09-08T19:51:05,019   writing requirements to /tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/requires.txt
2025-09-08T19:51:05,020   writing top-level names to /tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/top_level.txt
2025-09-08T19:51:05,020   writing manifest file '/tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:05,395   reading manifest file '/tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:05,396   reading manifest template 'MANIFEST.in'
2025-09-08T19:51:05,405   writing manifest file '/tmp/pip-pip-egg-info-koea8wvy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:05,662   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T19:51:05,667   Source in /tmp/pip-wheel-53g5y6uw/py-popgen_f1e9e9c664b14b66b06198eb870b3e74 has version 0.1, which satisfies requirement py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz
2025-09-08T19:51:05,667   Removed py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-bc1cgy_v'
2025-09-08T19:51:05,675 Created temporary directory: /tmp/pip-unpack-nkk5n0o_
2025-09-08T19:51:05,676 Created temporary directory: /tmp/pip-unpack-w34t285s
2025-09-08T19:51:05,676 Building wheels for collected packages: py-popgen
2025-09-08T19:51:05,677   Created temporary directory: /tmp/pip-wheel-xo00cfs9
2025-09-08T19:51:05,677   DEPRECATION: Building 'py-popgen' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'py-popgen'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T19:51:05,678   Building wheel for py-popgen (setup.py): started
2025-09-08T19:51:05,679   Destination directory: /tmp/pip-wheel-xo00cfs9
2025-09-08T19:51:05,679   Running command python setup.py bdist_wheel
2025-09-08T19:51:07,079   running bdist_wheel
2025-09-08T19:51:07,451   running build
2025-09-08T19:51:07,451   running build_py
2025-09-08T19:51:07,528   creating build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,528   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,529   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,529   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,530   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,531   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,531   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,532   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,533   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,533   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,534   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,534   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,535   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,535   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,536   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,536   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,537   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,538   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,538   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,539   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,539   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,540   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,540   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,541   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,542   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,542   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,543   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,543   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,544   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,544   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,545   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,545   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,546   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,546   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,547   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,548   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,548   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,549   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,549   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,550   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,550   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,551   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,551   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,552   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,552   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,553   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,553   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,554   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,554   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,555   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,555   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,556   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,556   running egg_info
2025-09-08T19:51:07,629   writing py_popgen.egg-info/PKG-INFO
2025-09-08T19:51:07,631   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2025-09-08T19:51:07,631   writing requirements to py_popgen.egg-info/requires.txt
2025-09-08T19:51:07,631   writing top-level names to py_popgen.egg-info/top_level.txt
2025-09-08T19:51:07,709   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:07,714   reading manifest template 'MANIFEST.in'
2025-09-08T19:51:07,726   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:07,727   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,729   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,731   running build_ext
2025-09-08T19:51:07,738   building 'pgpipe.test_cython' extension
2025-09-08T19:51:07,739   creating build/temp.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:07,739   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-313/pgpipe/test_cython.o
2025-09-08T19:51:08,121   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2025-09-08T19:51:08,124   pgpipe/test_cython.c:2951:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:08,124    2951 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2025-09-08T19:51:08,124         |                 ^
2025-09-08T19:51:08,126   pgpipe/test_cython.c:2951:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:08,126    2951 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2025-09-08T19:51:08,127         |                                           ^
2025-09-08T19:51:08,134   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2025-09-08T19:51:08,137   pgpipe/test_cython.c:3399:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:08,137    3399 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2025-09-08T19:51:08,137         |                 ^
2025-09-08T19:51:08,140   pgpipe/test_cython.c:3399:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:08,140    3399 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2025-09-08T19:51:08,140         |                                           ^
2025-09-08T19:51:11,302   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so
2025-09-08T19:51:11,416   running build_scripts
2025-09-08T19:51:11,417   creating build/scripts-3.13
2025-09-08T19:51:11,417   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.13
2025-09-08T19:51:11,418   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.13
2025-09-08T19:51:11,419   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.13
2025-09-08T19:51:11,420   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.13
2025-09-08T19:51:11,422   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.13
2025-09-08T19:51:11,423   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.13
2025-09-08T19:51:11,424   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.13
2025-09-08T19:51:11,425   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.13
2025-09-08T19:51:11,425   copying and adjusting pgpipe/convert.py -> build/scripts-3.13
2025-09-08T19:51:11,426   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.13
2025-09-08T19:51:11,427   copying and adjusting pgpipe/admixture.py -> build/scripts-3.13
2025-09-08T19:51:11,428   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.13
2025-09-08T19:51:11,429   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.13
2025-09-08T19:51:11,429   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.13
2025-09-08T19:51:11,430   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.13
2025-09-08T19:51:11,431   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.13
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/vcf_calc.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/vcf_split.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/vcf_phase.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/four_gamete.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/stat_sampler.py from 644 to 755
2025-09-08T19:51:11,432   changing mode of build/scripts-3.13/bed_tasks.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/informative_loci_filter.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/convert.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/vcf_to_ima.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/admixture.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/plink_ld.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/ima3_wrapper.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/eigenstrat_fstats.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/vcf_liftover.py from 644 to 755
2025-09-08T19:51:11,433   changing mode of build/scripts-3.13/vcf_utilities.py from 644 to 755
2025-09-08T19:51:11,512   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T19:51:11,512   !!

2025-09-08T19:51:11,512           ********************************************************************************
2025-09-08T19:51:11,512           Please avoid running ``setup.py`` directly.
2025-09-08T19:51:11,513           Instead, use pypa/build, pypa/installer or other
2025-09-08T19:51:11,513           standards-based tools.

2025-09-08T19:51:11,513           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T19:51:11,513           or your builds will no longer be supported.

2025-09-08T19:51:11,513           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T19:51:11,513           ********************************************************************************

2025-09-08T19:51:11,513   !!
2025-09-08T19:51:11,513     self.initialize_options()
2025-09-08T19:51:11,585   installing to build/bdist.linux-armv7l/wheel
2025-09-08T19:51:11,585   running install
2025-09-08T19:51:11,608   running install_lib
2025-09-08T19:51:11,681   creating build/bdist.linux-armv7l/wheel
2025-09-08T19:51:11,682   creating build/bdist.linux-armv7l/wheel/pgpipe
2025-09-08T19:51:11,682   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,684   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,684   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,686   copying build/lib.linux-armv7l-cpython-313/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,686   copying build/lib.linux-armv7l-cpython-313/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,687   copying build/lib.linux-armv7l-cpython-313/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,687   copying build/lib.linux-armv7l-cpython-313/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,687   copying build/lib.linux-armv7l-cpython-313/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,688   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,688   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,689   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,689   copying build/lib.linux-armv7l-cpython-313/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,689   copying build/lib.linux-armv7l-cpython-313/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,690   copying build/lib.linux-armv7l-cpython-313/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,690   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,690   copying build/lib.linux-armv7l-cpython-313/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,691   copying build/lib.linux-armv7l-cpython-313/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,691   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,692   copying build/lib.linux-armv7l-cpython-313/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,692   copying build/lib.linux-armv7l-cpython-313/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,693   copying build/lib.linux-armv7l-cpython-313/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,693   copying build/lib.linux-armv7l-cpython-313/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,694   copying build/lib.linux-armv7l-cpython-313/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,694   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,694   copying build/lib.linux-armv7l-cpython-313/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,695   copying build/lib.linux-armv7l-cpython-313/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,695   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,695   copying build/lib.linux-armv7l-cpython-313/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,696   copying build/lib.linux-armv7l-cpython-313/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,696   copying build/lib.linux-armv7l-cpython-313/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,697   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,697   copying build/lib.linux-armv7l-cpython-313/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,697   copying build/lib.linux-armv7l-cpython-313/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,698   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,698   copying build/lib.linux-armv7l-cpython-313/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,699   copying build/lib.linux-armv7l-cpython-313/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,699   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,700   copying build/lib.linux-armv7l-cpython-313/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,700   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,700   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,701   copying build/lib.linux-armv7l-cpython-313/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,701   copying build/lib.linux-armv7l-cpython-313/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,702   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,702   copying build/lib.linux-armv7l-cpython-313/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,702   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,703   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,703   copying build/lib.linux-armv7l-cpython-313/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,704   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,704   copying build/lib.linux-armv7l-cpython-313/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,705   copying build/lib.linux-armv7l-cpython-313/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,705   copying build/lib.linux-armv7l-cpython-313/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,705   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,706   copying build/lib.linux-armv7l-cpython-313/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,706   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:11,707   running install_egg_info
2025-09-08T19:51:11,783   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/./py_popgen-0.1-py3.13.egg-info
2025-09-08T19:51:11,785   running install_scripts
2025-09-08T19:51:11,786   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,786   copying build/scripts-3.13/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,786   copying build/scripts-3.13/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,787   copying build/scripts-3.13/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,787   copying build/scripts-3.13/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,788   copying build/scripts-3.13/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,788   copying build/scripts-3.13/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,788   copying build/scripts-3.13/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,789   copying build/scripts-3.13/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,789   copying build/scripts-3.13/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,790   copying build/scripts-3.13/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,790   copying build/scripts-3.13/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,791   copying build/scripts-3.13/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,791   copying build/scripts-3.13/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,792   copying build/scripts-3.13/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,792   copying build/scripts-3.13/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,793   copying build/scripts-3.13/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2025-09-08T19:51:11,793   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_utilities.py to 755
2025-09-08T19:51:11,793   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_liftover.py to 755
2025-09-08T19:51:11,793   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/eigenstrat_fstats.py to 755
2025-09-08T19:51:11,793   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/ima3_wrapper.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/plink_ld.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/admixture.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_to_ima.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/convert.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/informative_loci_filter.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/bed_tasks.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/stat_sampler.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/four_gamete.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_phase.py to 755
2025-09-08T19:51:11,794   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_split.py to 755
2025-09-08T19:51:11,795   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_calc.py to 755
2025-09-08T19:51:11,795   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_filter.py to 755
2025-09-08T19:51:11,843   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.dist-info/WHEEL
2025-09-08T19:51:11,845   creating '/tmp/pip-wheel-xo00cfs9/py_popgen-0.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T19:51:11,846   adding 'pgpipe/__init__.py'
2025-09-08T19:51:11,848   adding 'pgpipe/admixtools.py'
2025-09-08T19:51:11,849   adding 'pgpipe/admixture.py'
2025-09-08T19:51:11,850   adding 'pgpipe/argparse_sets.py'
2025-09-08T19:51:11,852   adding 'pgpipe/bcftools.py'
2025-09-08T19:51:11,854   adding 'pgpipe/beagle.py'
2025-09-08T19:51:11,855   adding 'pgpipe/bed_invert.py'
2025-09-08T19:51:11,856   adding 'pgpipe/bed_tasks.py'
2025-09-08T19:51:11,857   adding 'pgpipe/bedtools.py'
2025-09-08T19:51:11,859   adding 'pgpipe/convert.py'
2025-09-08T19:51:11,861   adding 'pgpipe/eigenstrat_fstats.py'
2025-09-08T19:51:11,862   adding 'pgpipe/extend_loci.py'
2025-09-08T19:51:11,862   adding 'pgpipe/fasta.py'
2025-09-08T19:51:11,863   adding 'pgpipe/fasta_utilities.py'
2025-09-08T19:51:11,864   adding 'pgpipe/filter_single_vcf.py'
2025-09-08T19:51:11,868   adding 'pgpipe/four_gamete.py'
2025-09-08T19:51:11,870   adding 'pgpipe/genome_region.py'
2025-09-08T19:51:11,871   adding 'pgpipe/get_nonmissing_chunks.py'
2025-09-08T19:51:11,872   adding 'pgpipe/graph_plotter.py'
2025-09-08T19:51:11,873   adding 'pgpipe/ima3_wrapper.py'
2025-09-08T19:51:11,874   adding 'pgpipe/ima_priors.py'
2025-09-08T19:51:11,875   adding 'pgpipe/ima_to_treemix.py'
2025-09-08T19:51:11,876   adding 'pgpipe/informative_loci_filter.py'
2025-09-08T19:51:11,877   adding 'pgpipe/logging_module.py'
2025-09-08T19:51:11,878   adding 'pgpipe/min_pop_filter.py'
2025-09-08T19:51:11,879   adding 'pgpipe/model.py'
2025-09-08T19:51:11,881   adding 'pgpipe/model_creator.py'
2025-09-08T19:51:11,882   adding 'pgpipe/model_sampler.py'
2025-09-08T19:51:11,883   adding 'pgpipe/parse_functions.py'
2025-09-08T19:51:11,884   adding 'pgpipe/picard.py'
2025-09-08T19:51:11,886   adding 'pgpipe/plink.py'
2025-09-08T19:51:11,888   adding 'pgpipe/plink_ld.py'
2025-09-08T19:51:11,890   adding 'pgpipe/shapeit.py'
2025-09-08T19:51:11,890   adding 'pgpipe/site_stats.py'
2025-09-08T19:51:11,892   adding 'pgpipe/stat_sampler.py'
2025-09-08T19:51:11,893   adding 'pgpipe/subtract_bed.py'
2025-09-08T19:51:11,924   adding 'pgpipe/test_cython.c'
2025-09-08T19:51:11,966   adding 'pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T19:51:11,968   adding 'pgpipe/test_cython.pyx'
2025-09-08T19:51:11,971   adding 'pgpipe/vcf_calc.py'
2025-09-08T19:51:11,975   adding 'pgpipe/vcf_filter.py'
2025-09-08T19:51:11,978   adding 'pgpipe/vcf_filter_bcftools.py'
2025-09-08T19:51:11,981   adding 'pgpipe/vcf_filter_vcftools.py'
2025-09-08T19:51:11,983   adding 'pgpipe/vcf_liftover.py'
2025-09-08T19:51:11,986   adding 'pgpipe/vcf_phase.py'
2025-09-08T19:51:11,989   adding 'pgpipe/vcf_reader_func.py'
2025-09-08T19:51:11,991   adding 'pgpipe/vcf_ref_to_seq.py'
2025-09-08T19:51:11,993   adding 'pgpipe/vcf_sampler.py'
2025-09-08T19:51:11,995   adding 'pgpipe/vcf_split.py'
2025-09-08T19:51:11,997   adding 'pgpipe/vcf_split_pysam.py'
2025-09-08T19:51:12,000   adding 'pgpipe/vcf_to_ima.py'
2025-09-08T19:51:12,001   adding 'pgpipe/vcf_to_treemix.py'
2025-09-08T19:51:12,002   adding 'pgpipe/vcf_utilities.py'
2025-09-08T19:51:12,005   adding 'pgpipe/vcftools.py'
2025-09-08T19:51:12,007   adding 'py_popgen-0.1.data/scripts/admixture.py'
2025-09-08T19:51:12,008   adding 'py_popgen-0.1.data/scripts/bed_tasks.py'
2025-09-08T19:51:12,010   adding 'py_popgen-0.1.data/scripts/convert.py'
2025-09-08T19:51:12,012   adding 'py_popgen-0.1.data/scripts/eigenstrat_fstats.py'
2025-09-08T19:51:12,016   adding 'py_popgen-0.1.data/scripts/four_gamete.py'
2025-09-08T19:51:12,018   adding 'py_popgen-0.1.data/scripts/ima3_wrapper.py'
2025-09-08T19:51:12,019   adding 'py_popgen-0.1.data/scripts/informative_loci_filter.py'
2025-09-08T19:51:12,021   adding 'py_popgen-0.1.data/scripts/plink_ld.py'
2025-09-08T19:51:12,023   adding 'py_popgen-0.1.data/scripts/stat_sampler.py'
2025-09-08T19:51:12,026   adding 'py_popgen-0.1.data/scripts/vcf_calc.py'
2025-09-08T19:51:12,029   adding 'py_popgen-0.1.data/scripts/vcf_filter.py'
2025-09-08T19:51:12,031   adding 'py_popgen-0.1.data/scripts/vcf_liftover.py'
2025-09-08T19:51:12,035   adding 'py_popgen-0.1.data/scripts/vcf_phase.py'
2025-09-08T19:51:12,037   adding 'py_popgen-0.1.data/scripts/vcf_split.py'
2025-09-08T19:51:12,040   adding 'py_popgen-0.1.data/scripts/vcf_to_ima.py'
2025-09-08T19:51:12,042   adding 'py_popgen-0.1.data/scripts/vcf_utilities.py'
2025-09-08T19:51:12,043   adding 'py_popgen-0.1.dist-info/METADATA'
2025-09-08T19:51:12,044   adding 'py_popgen-0.1.dist-info/WHEEL'
2025-09-08T19:51:12,044   adding 'py_popgen-0.1.dist-info/top_level.txt'
2025-09-08T19:51:12,045   adding 'py_popgen-0.1.dist-info/RECORD'
2025-09-08T19:51:12,046   removing build/bdist.linux-armv7l/wheel
2025-09-08T19:51:12,200   Building wheel for py-popgen (setup.py): finished with status 'done'
2025-09-08T19:51:12,205   Created wheel for py-popgen: filename=py_popgen-0.1-cp313-cp313-linux_armv7l.whl size=401165 sha256=5661aad46507a933371a5106a1a3480a92ce95b4daa7eaac0edcb272ef39bcbf
2025-09-08T19:51:12,206   Stored in directory: /tmp/pip-ephem-wheel-cache-5hwaotiq/wheels/63/ba/f5/b86cb755fea33537c9df2ab8ac0d03f8fea9eae092d9c0f72d
2025-09-08T19:51:12,215 Successfully built py-popgen
2025-09-08T19:51:12,218 Removed build tracker: '/tmp/pip-build-tracker-bc1cgy_v'