2025-09-08T19:51:13,394 Created temporary directory: /tmp/pip-build-tracker-av_e4vs8
2025-09-08T19:51:13,394 Initialized build tracking at /tmp/pip-build-tracker-av_e4vs8
2025-09-08T19:51:13,394 Created build tracker: /tmp/pip-build-tracker-av_e4vs8
2025-09-08T19:51:13,394 Entered build tracker: /tmp/pip-build-tracker-av_e4vs8
2025-09-08T19:51:13,395 Created temporary directory: /tmp/pip-wheel-kf1bdoee
2025-09-08T19:51:13,398 Created temporary directory: /tmp/pip-ephem-wheel-cache-nnaz1_7a
2025-09-08T19:51:13,453 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T19:51:13,456 2 location(s) to search for versions of py-popgen:
2025-09-08T19:51:13,456 * https://pypi.org/simple/py-popgen/
2025-09-08T19:51:13,456 * https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:51:13,456 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2025-09-08T19:51:13,456 Getting page https://pypi.org/simple/py-popgen/
2025-09-08T19:51:13,458 Found index url https://pypi.org/simple/
2025-09-08T19:51:13,529 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2025-09-08T19:51:13,531   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2025-09-08T19:51:13,532   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2025-09-08T19:51:13,533   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2025-09-08T19:51:13,534   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2025-09-08T19:51:13,534   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2025-09-08T19:51:13,534   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2025-09-08T19:51:13,534   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2025-09-08T19:51:13,535   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2025-09-08T19:51:13,535   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2025-09-08T19:51:13,535   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2025-09-08T19:51:13,535   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,535   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2025-09-08T19:51:13,536   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,536   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2025-09-08T19:51:13,536   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,536   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,536   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2025-09-08T19:51:13,537   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,537   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2025-09-08T19:51:13,537   Ignoring invalid Requires-Python ('>=3.6.*, !=3.8.*') for link: https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,537   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2025-09-08T19:51:13,537 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:51:13,538 Getting page https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:51:13,539 Found index url https://www.piwheels.org/simple/
2025-09-08T19:51:13,620 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2025-09-08T19:51:13,629   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,629   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,629   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,630   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp311-cp311-linux_armv6l.whl#sha256=07620288fb87adf38d806db0782f4b4d78a4bfdc9cf3af5c84c2683dd7351d6d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp311-cp311-linux_armv7l.whl#sha256=07620288fb87adf38d806db0782f4b4d78a4bfdc9cf3af5c84c2683dd7351d6d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,631   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv6l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv7l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,632   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,633   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv6l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv7l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2025-09-08T19:51:13,634   Skipping link: No binaries permitted for py-popgen: https://archive1.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2025-09-08T19:51:13,635 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2025-09-08T19:51:13,635 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2025-09-08T19:51:13,659 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2025-09-08T19:51:13,660 Collecting py-popgen==0.1.1
2025-09-08T19:51:13,662   Created temporary directory: /tmp/pip-unpack-xbp1w5g0
2025-09-08T19:51:13,879   Downloading py-popgen-0.1.1.tar.gz (27.2 MB)
2025-09-08T19:51:18,776   Added py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-av_e4vs8'
2025-09-08T19:51:18,777   Running setup.py (path:/tmp/pip-wheel-kf1bdoee/py-popgen_979ae4962d05403d81315177a94b930d/setup.py) egg_info for package py-popgen
2025-09-08T19:51:18,777   Created temporary directory: /tmp/pip-pip-egg-info-hw3qc9zy
2025-09-08T19:51:18,778   Preparing metadata (setup.py): started
2025-09-08T19:51:18,778   Running command python setup.py egg_info
2025-09-08T19:51:20,879   Compiling pgpipe/test_cython.pyx because it changed.
2025-09-08T19:51:20,879   [1/1] Cythonizing pgpipe/test_cython.pyx
2025-09-08T19:51:21,379   running egg_info
2025-09-08T19:51:21,683   creating /tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info
2025-09-08T19:51:21,684   writing /tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/PKG-INFO
2025-09-08T19:51:21,685   writing dependency_links to /tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/dependency_links.txt
2025-09-08T19:51:21,685   writing requirements to /tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/requires.txt
2025-09-08T19:51:21,686   writing top-level names to /tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/top_level.txt
2025-09-08T19:51:21,686   writing manifest file '/tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:22,067   reading manifest file '/tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:22,067   reading manifest template 'MANIFEST.in'
2025-09-08T19:51:22,076   writing manifest file '/tmp/pip-pip-egg-info-hw3qc9zy/py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:22,332   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T19:51:22,337   Source in /tmp/pip-wheel-kf1bdoee/py-popgen_979ae4962d05403d81315177a94b930d has version 0.1.1, which satisfies requirement py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz
2025-09-08T19:51:22,337   Removed py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-av_e4vs8'
2025-09-08T19:51:22,345 Created temporary directory: /tmp/pip-unpack-gg6sgdfk
2025-09-08T19:51:22,345 Created temporary directory: /tmp/pip-unpack-xgfxztx0
2025-09-08T19:51:22,346 Building wheels for collected packages: py-popgen
2025-09-08T19:51:22,347   Created temporary directory: /tmp/pip-wheel-20nqwqf0
2025-09-08T19:51:22,348   DEPRECATION: Building 'py-popgen' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'py-popgen'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T19:51:22,349   Building wheel for py-popgen (setup.py): started
2025-09-08T19:51:22,350   Destination directory: /tmp/pip-wheel-20nqwqf0
2025-09-08T19:51:22,350   Running command python setup.py bdist_wheel
2025-09-08T19:51:23,751   running bdist_wheel
2025-09-08T19:51:24,124   running build
2025-09-08T19:51:24,124   running build_py
2025-09-08T19:51:24,201   creating build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,202   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,202   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,203   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,204   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,205   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,205   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,206   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,206   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,207   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,207   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,208   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,209   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,209   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,210   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,210   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,211   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,212   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,212   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,213   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,214   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,214   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,215   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,215   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,216   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,217   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,217   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,218   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,218   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,219   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,219   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,220   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,221   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,221   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,222   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,222   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,223   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,224   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,224   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,225   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,225   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,226   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,226   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,227   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,227   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,228   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,229   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,229   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,230   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,230   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,231   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,231   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,232   running egg_info
2025-09-08T19:51:24,306   writing py_popgen.egg-info/PKG-INFO
2025-09-08T19:51:24,307   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2025-09-08T19:51:24,308   writing requirements to py_popgen.egg-info/requires.txt
2025-09-08T19:51:24,308   writing top-level names to py_popgen.egg-info/top_level.txt
2025-09-08T19:51:24,387   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:24,391   reading manifest template 'MANIFEST.in'
2025-09-08T19:51:24,403   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2025-09-08T19:51:24,405   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,407   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,409   running build_ext
2025-09-08T19:51:24,416   building 'pgpipe.test_cython' extension
2025-09-08T19:51:24,417   creating build/temp.linux-armv7l-cpython-313/pgpipe
2025-09-08T19:51:24,417   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-313/pgpipe/test_cython.o
2025-09-08T19:51:24,789   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2025-09-08T19:51:24,791   pgpipe/test_cython.c:2951:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:24,791    2951 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2025-09-08T19:51:24,791         |                 ^
2025-09-08T19:51:24,794   pgpipe/test_cython.c:2951:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:24,794    2951 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2025-09-08T19:51:24,794         |                                           ^
2025-09-08T19:51:24,802   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2025-09-08T19:51:24,805   pgpipe/test_cython.c:3399:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:24,805    3399 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2025-09-08T19:51:24,805         |                 ^
2025-09-08T19:51:24,808   pgpipe/test_cython.c:3399:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2025-09-08T19:51:24,808    3399 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2025-09-08T19:51:24,808         |                                           ^
2025-09-08T19:51:27,967   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so
2025-09-08T19:51:28,084   running build_scripts
2025-09-08T19:51:28,085   creating build/scripts-3.13
2025-09-08T19:51:28,085   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.13
2025-09-08T19:51:28,086   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.13
2025-09-08T19:51:28,088   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.13
2025-09-08T19:51:28,088   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.13
2025-09-08T19:51:28,090   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.13
2025-09-08T19:51:28,091   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.13
2025-09-08T19:51:28,092   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.13
2025-09-08T19:51:28,093   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.13
2025-09-08T19:51:28,094   copying and adjusting pgpipe/convert.py -> build/scripts-3.13
2025-09-08T19:51:28,094   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.13
2025-09-08T19:51:28,095   copying and adjusting pgpipe/admixture.py -> build/scripts-3.13
2025-09-08T19:51:28,096   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.13
2025-09-08T19:51:28,097   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.13
2025-09-08T19:51:28,098   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.13
2025-09-08T19:51:28,099   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.13
2025-09-08T19:51:28,099   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.13
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/vcf_calc.py from 644 to 755
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/vcf_split.py from 644 to 755
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/vcf_phase.py from 644 to 755
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/four_gamete.py from 644 to 755
2025-09-08T19:51:28,100   changing mode of build/scripts-3.13/stat_sampler.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/bed_tasks.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/informative_loci_filter.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/convert.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/vcf_to_ima.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/admixture.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/plink_ld.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/ima3_wrapper.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/eigenstrat_fstats.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/vcf_liftover.py from 644 to 755
2025-09-08T19:51:28,101   changing mode of build/scripts-3.13/vcf_utilities.py from 644 to 755
2025-09-08T19:51:28,178   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T19:51:28,178   !!

2025-09-08T19:51:28,178           ********************************************************************************
2025-09-08T19:51:28,179           Please avoid running ``setup.py`` directly.
2025-09-08T19:51:28,179           Instead, use pypa/build, pypa/installer or other
2025-09-08T19:51:28,179           standards-based tools.

2025-09-08T19:51:28,179           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T19:51:28,179           or your builds will no longer be supported.

2025-09-08T19:51:28,179           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T19:51:28,179           ********************************************************************************

2025-09-08T19:51:28,180   !!
2025-09-08T19:51:28,180     self.initialize_options()
2025-09-08T19:51:28,253   installing to build/bdist.linux-armv7l/wheel
2025-09-08T19:51:28,253   running install
2025-09-08T19:51:28,276   running install_lib
2025-09-08T19:51:28,351   creating build/bdist.linux-armv7l/wheel
2025-09-08T19:51:28,352   creating build/bdist.linux-armv7l/wheel/pgpipe
2025-09-08T19:51:28,352   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,353   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,354   copying build/lib.linux-armv7l-cpython-313/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,355   copying build/lib.linux-armv7l-cpython-313/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,356   copying build/lib.linux-armv7l-cpython-313/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,356   copying build/lib.linux-armv7l-cpython-313/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,357   copying build/lib.linux-armv7l-cpython-313/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,357   copying build/lib.linux-armv7l-cpython-313/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,357   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,358   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,358   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,358   copying build/lib.linux-armv7l-cpython-313/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,359   copying build/lib.linux-armv7l-cpython-313/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,359   copying build/lib.linux-armv7l-cpython-313/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,360   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,360   copying build/lib.linux-armv7l-cpython-313/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,360   copying build/lib.linux-armv7l-cpython-313/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,361   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,361   copying build/lib.linux-armv7l-cpython-313/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,361   copying build/lib.linux-armv7l-cpython-313/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,362   copying build/lib.linux-armv7l-cpython-313/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,362   copying build/lib.linux-armv7l-cpython-313/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,363   copying build/lib.linux-armv7l-cpython-313/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,363   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,364   copying build/lib.linux-armv7l-cpython-313/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,364   copying build/lib.linux-armv7l-cpython-313/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,365   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,365   copying build/lib.linux-armv7l-cpython-313/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,365   copying build/lib.linux-armv7l-cpython-313/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,366   copying build/lib.linux-armv7l-cpython-313/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,366   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,367   copying build/lib.linux-armv7l-cpython-313/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,367   copying build/lib.linux-armv7l-cpython-313/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,367   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,368   copying build/lib.linux-armv7l-cpython-313/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,368   copying build/lib.linux-armv7l-cpython-313/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,369   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,369   copying build/lib.linux-armv7l-cpython-313/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,370   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,370   copying build/lib.linux-armv7l-cpython-313/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,370   copying build/lib.linux-armv7l-cpython-313/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,371   copying build/lib.linux-armv7l-cpython-313/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,371   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,372   copying build/lib.linux-armv7l-cpython-313/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,372   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,372   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,373   copying build/lib.linux-armv7l-cpython-313/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,373   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,374   copying build/lib.linux-armv7l-cpython-313/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,374   copying build/lib.linux-armv7l-cpython-313/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,375   copying build/lib.linux-armv7l-cpython-313/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,375   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,375   copying build/lib.linux-armv7l-cpython-313/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,376   copying build/lib.linux-armv7l-cpython-313/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/./pgpipe
2025-09-08T19:51:28,376   running install_egg_info
2025-09-08T19:51:28,455   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/./py_popgen-0.1.1-py3.13.egg-info
2025-09-08T19:51:28,456   running install_scripts
2025-09-08T19:51:28,457   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,457   copying build/scripts-3.13/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,458   copying build/scripts-3.13/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,458   copying build/scripts-3.13/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,459   copying build/scripts-3.13/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,459   copying build/scripts-3.13/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,459   copying build/scripts-3.13/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,460   copying build/scripts-3.13/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,460   copying build/scripts-3.13/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,461   copying build/scripts-3.13/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,461   copying build/scripts-3.13/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,462   copying build/scripts-3.13/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,462   copying build/scripts-3.13/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,463   copying build/scripts-3.13/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,463   copying build/scripts-3.13/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,464   copying build/scripts-3.13/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,464   copying build/scripts-3.13/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_utilities.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_liftover.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/ima3_wrapper.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/plink_ld.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/admixture.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_to_ima.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/convert.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/informative_loci_filter.py to 755
2025-09-08T19:51:28,465   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/bed_tasks.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/stat_sampler.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/four_gamete.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_phase.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_split.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_calc.py to 755
2025-09-08T19:51:28,466   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_filter.py to 755
2025-09-08T19:51:28,515   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.dist-info/WHEEL
2025-09-08T19:51:28,516   creating '/tmp/pip-wheel-20nqwqf0/py_popgen-0.1.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T19:51:28,517   adding 'pgpipe/__init__.py'
2025-09-08T19:51:28,519   adding 'pgpipe/admixtools.py'
2025-09-08T19:51:28,521   adding 'pgpipe/admixture.py'
2025-09-08T19:51:28,521   adding 'pgpipe/argparse_sets.py'
2025-09-08T19:51:28,524   adding 'pgpipe/bcftools.py'
2025-09-08T19:51:28,525   adding 'pgpipe/beagle.py'
2025-09-08T19:51:28,526   adding 'pgpipe/bed_invert.py'
2025-09-08T19:51:28,528   adding 'pgpipe/bed_tasks.py'
2025-09-08T19:51:28,528   adding 'pgpipe/bedtools.py'
2025-09-08T19:51:28,530   adding 'pgpipe/convert.py'
2025-09-08T19:51:28,532   adding 'pgpipe/eigenstrat_fstats.py'
2025-09-08T19:51:28,533   adding 'pgpipe/extend_loci.py'
2025-09-08T19:51:28,534   adding 'pgpipe/fasta.py'
2025-09-08T19:51:28,535   adding 'pgpipe/fasta_utilities.py'
2025-09-08T19:51:28,535   adding 'pgpipe/filter_single_vcf.py'
2025-09-08T19:51:28,540   adding 'pgpipe/four_gamete.py'
2025-09-08T19:51:28,542   adding 'pgpipe/genome_region.py'
2025-09-08T19:51:28,543   adding 'pgpipe/get_nonmissing_chunks.py'
2025-09-08T19:51:28,544   adding 'pgpipe/graph_plotter.py'
2025-09-08T19:51:28,545   adding 'pgpipe/ima3_wrapper.py'
2025-09-08T19:51:28,546   adding 'pgpipe/ima_priors.py'
2025-09-08T19:51:28,547   adding 'pgpipe/ima_to_treemix.py'
2025-09-08T19:51:28,548   adding 'pgpipe/informative_loci_filter.py'
2025-09-08T19:51:28,549   adding 'pgpipe/logging_module.py'
2025-09-08T19:51:28,550   adding 'pgpipe/min_pop_filter.py'
2025-09-08T19:51:28,551   adding 'pgpipe/model.py'
2025-09-08T19:51:28,552   adding 'pgpipe/model_creator.py'
2025-09-08T19:51:28,554   adding 'pgpipe/model_sampler.py'
2025-09-08T19:51:28,555   adding 'pgpipe/parse_functions.py'
2025-09-08T19:51:28,556   adding 'pgpipe/picard.py'
2025-09-08T19:51:28,558   adding 'pgpipe/plink.py'
2025-09-08T19:51:28,560   adding 'pgpipe/plink_ld.py'
2025-09-08T19:51:28,561   adding 'pgpipe/shapeit.py'
2025-09-08T19:51:28,562   adding 'pgpipe/site_stats.py'
2025-09-08T19:51:28,564   adding 'pgpipe/stat_sampler.py'
2025-09-08T19:51:28,565   adding 'pgpipe/subtract_bed.py'
2025-09-08T19:51:28,595   adding 'pgpipe/test_cython.c'
2025-09-08T19:51:28,638   adding 'pgpipe/test_cython.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T19:51:28,640   adding 'pgpipe/test_cython.pyx'
2025-09-08T19:51:28,643   adding 'pgpipe/vcf_calc.py'
2025-09-08T19:51:28,646   adding 'pgpipe/vcf_filter.py'
2025-09-08T19:51:28,650   adding 'pgpipe/vcf_filter_bcftools.py'
2025-09-08T19:51:28,653   adding 'pgpipe/vcf_filter_vcftools.py'
2025-09-08T19:51:28,654   adding 'pgpipe/vcf_liftover.py'
2025-09-08T19:51:28,658   adding 'pgpipe/vcf_phase.py'
2025-09-08T19:51:28,661   adding 'pgpipe/vcf_reader_func.py'
2025-09-08T19:51:28,662   adding 'pgpipe/vcf_ref_to_seq.py'
2025-09-08T19:51:28,665   adding 'pgpipe/vcf_sampler.py'
2025-09-08T19:51:28,667   adding 'pgpipe/vcf_split.py'
2025-09-08T19:51:28,669   adding 'pgpipe/vcf_split_pysam.py'
2025-09-08T19:51:28,672   adding 'pgpipe/vcf_to_ima.py'
2025-09-08T19:51:28,673   adding 'pgpipe/vcf_to_treemix.py'
2025-09-08T19:51:28,674   adding 'pgpipe/vcf_utilities.py'
2025-09-08T19:51:28,677   adding 'pgpipe/vcftools.py'
2025-09-08T19:51:28,679   adding 'py_popgen-0.1.1.data/scripts/admixture.py'
2025-09-08T19:51:28,680   adding 'py_popgen-0.1.1.data/scripts/bed_tasks.py'
2025-09-08T19:51:28,682   adding 'py_popgen-0.1.1.data/scripts/convert.py'
2025-09-08T19:51:28,684   adding 'py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py'
2025-09-08T19:51:28,688   adding 'py_popgen-0.1.1.data/scripts/four_gamete.py'
2025-09-08T19:51:28,690   adding 'py_popgen-0.1.1.data/scripts/ima3_wrapper.py'
2025-09-08T19:51:28,691   adding 'py_popgen-0.1.1.data/scripts/informative_loci_filter.py'
2025-09-08T19:51:28,693   adding 'py_popgen-0.1.1.data/scripts/plink_ld.py'
2025-09-08T19:51:28,695   adding 'py_popgen-0.1.1.data/scripts/stat_sampler.py'
2025-09-08T19:51:28,698   adding 'py_popgen-0.1.1.data/scripts/vcf_calc.py'
2025-09-08T19:51:28,701   adding 'py_popgen-0.1.1.data/scripts/vcf_filter.py'
2025-09-08T19:51:28,703   adding 'py_popgen-0.1.1.data/scripts/vcf_liftover.py'
2025-09-08T19:51:28,707   adding 'py_popgen-0.1.1.data/scripts/vcf_phase.py'
2025-09-08T19:51:28,709   adding 'py_popgen-0.1.1.data/scripts/vcf_split.py'
2025-09-08T19:51:28,712   adding 'py_popgen-0.1.1.data/scripts/vcf_to_ima.py'
2025-09-08T19:51:28,714   adding 'py_popgen-0.1.1.data/scripts/vcf_utilities.py'
2025-09-08T19:51:28,715   adding 'py_popgen-0.1.1.dist-info/METADATA'
2025-09-08T19:51:28,716   adding 'py_popgen-0.1.1.dist-info/WHEEL'
2025-09-08T19:51:28,716   adding 'py_popgen-0.1.1.dist-info/top_level.txt'
2025-09-08T19:51:28,717   adding 'py_popgen-0.1.1.dist-info/RECORD'
2025-09-08T19:51:28,718   removing build/bdist.linux-armv7l/wheel
2025-09-08T19:51:28,865   Building wheel for py-popgen (setup.py): finished with status 'done'
2025-09-08T19:51:28,870   Created wheel for py-popgen: filename=py_popgen-0.1.1-cp313-cp313-linux_armv7l.whl size=401255 sha256=76d64310432fac534ea759f5852ee509473d94c551b8a694d330b0e7b47ea4ba
2025-09-08T19:51:28,871   Stored in directory: /tmp/pip-ephem-wheel-cache-nnaz1_7a/wheels/a0/9c/19/84826084c49d6e7f37f6ba9404a981b8ea1bdd555dac1d6eb7
2025-09-08T19:51:28,880 Successfully built py-popgen
2025-09-08T19:51:28,883 Removed build tracker: '/tmp/pip-build-tracker-av_e4vs8'