2025-09-08T20:34:42,552 Created temporary directory: /tmp/pip-build-tracker-uczu1y8q 2025-09-08T20:34:42,552 Initialized build tracking at /tmp/pip-build-tracker-uczu1y8q 2025-09-08T20:34:42,552 Created build tracker: /tmp/pip-build-tracker-uczu1y8q 2025-09-08T20:34:42,553 Entered build tracker: /tmp/pip-build-tracker-uczu1y8q 2025-09-08T20:34:42,553 Created temporary directory: /tmp/pip-wheel-mhl8ck8v 2025-09-08T20:34:42,556 Created temporary directory: /tmp/pip-ephem-wheel-cache-ty4vub4j 2025-09-08T20:34:42,616 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T20:34:42,618 2 location(s) to search for versions of lightdock: 2025-09-08T20:34:42,618 * https://pypi.org/simple/lightdock/ 2025-09-08T20:34:42,618 * https://www.piwheels.org/simple/lightdock/ 2025-09-08T20:34:42,618 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-08T20:34:42,618 Getting page https://pypi.org/simple/lightdock/ 2025-09-08T20:34:42,620 Found index url https://pypi.org/simple/ 2025-09-08T20:34:42,694 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-08T20:34:42,700 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,701 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-08T20:34:42,701 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,701 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-08T20:34:42,702 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,702 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-08T20:34:42,702 Skipping link: No binaries permitted for lightdock: 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(requires-python:>=3.5), version: 0.8.0b2 2025-09-08T20:34:42,703 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/e5/b4/cb2be36ceb0217a0740e060d46e9089ec549e7f1abec9779e030f31c0d68/lightdock-0.8.0b3-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2025-09-08T20:34:42,704 Found link https://files.pythonhosted.org/packages/79/aa/24064d08faabc3e4f7acb6706795c52997d4ff8dfa4b6e47b027f4f07a8e/lightdock-0.8.0b3.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.0b3 2025-09-08T20:34:42,704 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/61/bf/f3820b1f89b07ee0082129593ddb3caefd8af05bf1e6807f6a1dd676fcd2/lightdock-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2025-09-08T20:34:42,704 Found link 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,835 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,835 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,835 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,835 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,835 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,836 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,836 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,836 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,836 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T20:34:42,836 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-08T20:34:42,836 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-08T20:34:42,861 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-08T20:34:42,862 Collecting lightdock==0.8.0a1 2025-09-08T20:34:42,863 Created temporary directory: /tmp/pip-unpack-l7s0nv4q 2025-09-08T20:34:43,110 Downloading lightdock-0.8.0a1.tar.gz (32.5 MB) 2025-09-08T20:34:51,829 Added lightdock==0.8.0a1 from https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz to build tracker '/tmp/pip-build-tracker-uczu1y8q' 2025-09-08T20:34:51,830 Running setup.py (path:/tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/setup.py) egg_info for package lightdock 2025-09-08T20:34:51,830 Created temporary directory: /tmp/pip-pip-egg-info-7ugkla0n 2025-09-08T20:34:51,831 Preparing metadata (setup.py): started 2025-09-08T20:34:51,831 Running command python setup.py egg_info 2025-09-08T20:34:52,395 /tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T20:34:52,395 !! 2025-09-08T20:34:52,396 ******************************************************************************** 2025-09-08T20:34:52,396 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T20:34:52,396 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T20:34:52,396 calls to avoid build errors in the future. 2025-09-08T20:34:52,396 ******************************************************************************** 2025-09-08T20:34:52,396 !! 2025-09-08T20:34:52,397 from setuptools.command.test import test as TestCommand 2025-09-08T20:34:52,730 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T20:34:52,730 !! 2025-09-08T20:34:52,730 ******************************************************************************** 2025-09-08T20:34:52,730 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T20:34:52,730 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T20:34:52,731 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T20:34:52,731 or your builds will no longer be supported. 2025-09-08T20:34:52,731 ******************************************************************************** 2025-09-08T20:34:52,731 !! 2025-09-08T20:34:52,731 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T20:34:55,904 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T20:34:55,904 !! 2025-09-08T20:34:55,904 ******************************************************************************** 2025-09-08T20:34:55,904 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T20:34:55,904 License :: Free For Educational Use 2025-09-08T20:34:55,904 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T20:34:55,905 ******************************************************************************** 2025-09-08T20:34:55,905 !! 2025-09-08T20:34:55,905 self._finalize_license_expression() 2025-09-08T20:34:55,980 running egg_info 2025-09-08T20:34:56,057 creating /tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info 2025-09-08T20:34:56,057 writing /tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/PKG-INFO 2025-09-08T20:34:56,058 writing dependency_links to /tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/dependency_links.txt 2025-09-08T20:34:56,059 writing requirements to /tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/requires.txt 2025-09-08T20:34:56,059 writing top-level names to /tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/top_level.txt 2025-09-08T20:34:56,060 writing manifest file '/tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/SOURCES.txt' 2025-09-08T20:34:56,474 reading manifest file '/tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/SOURCES.txt' 2025-09-08T20:34:56,475 reading manifest template 'MANIFEST.in' 2025-09-08T20:34:56,549 adding license file 'LICENSE' 2025-09-08T20:34:56,585 writing manifest file '/tmp/pip-pip-egg-info-7ugkla0n/lightdock.egg-info/SOURCES.txt' 2025-09-08T20:34:56,725 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T20:34:56,730 Source in /tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9 has version 0.8.0a1, which satisfies requirement lightdock==0.8.0a1 from https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz 2025-09-08T20:34:56,730 Removed lightdock==0.8.0a1 from https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz from build tracker '/tmp/pip-build-tracker-uczu1y8q' 2025-09-08T20:34:56,736 Created temporary directory: /tmp/pip-unpack-_zovv8fc 2025-09-08T20:34:56,737 Created temporary directory: /tmp/pip-unpack-h3z63hjy 2025-09-08T20:34:56,737 Building wheels for collected packages: lightdock 2025-09-08T20:34:56,738 Created temporary directory: /tmp/pip-wheel-mckj91p8 2025-09-08T20:34:56,739 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T20:34:56,740 Building wheel for lightdock (setup.py): started 2025-09-08T20:34:56,740 Destination directory: /tmp/pip-wheel-mckj91p8 2025-09-08T20:34:56,740 Running command python setup.py bdist_wheel 2025-09-08T20:34:57,256 /tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T20:34:57,257 !! 2025-09-08T20:34:57,257 ******************************************************************************** 2025-09-08T20:34:57,257 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T20:34:57,257 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T20:34:57,257 calls to avoid build errors in the future. 2025-09-08T20:34:57,257 ******************************************************************************** 2025-09-08T20:34:57,257 !! 2025-09-08T20:34:57,258 from setuptools.command.test import test as TestCommand 2025-09-08T20:34:57,585 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T20:34:57,585 !! 2025-09-08T20:34:57,586 ******************************************************************************** 2025-09-08T20:34:57,586 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T20:34:57,586 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T20:34:57,586 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T20:34:57,586 or your builds will no longer be supported. 2025-09-08T20:34:57,586 ******************************************************************************** 2025-09-08T20:34:57,586 !! 2025-09-08T20:34:57,587 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T20:34:58,422 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T20:34:58,423 !! 2025-09-08T20:34:58,423 ******************************************************************************** 2025-09-08T20:34:58,423 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T20:34:58,423 License :: Free For Educational Use 2025-09-08T20:34:58,423 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T20:34:58,423 ******************************************************************************** 2025-09-08T20:34:58,424 !! 2025-09-08T20:34:58,424 self._finalize_license_expression() 2025-09-08T20:34:58,425 running bdist_wheel 2025-09-08T20:34:58,796 running build 2025-09-08T20:34:58,796 running build_py 2025-09-08T20:34:58,875 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T20:34:58,876 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T20:34:58,877 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T20:34:58,877 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T20:34:58,878 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,879 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,880 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,880 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,881 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,882 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,883 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T20:34:58,884 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T20:34:58,884 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T20:34:58,885 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,886 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,886 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,887 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,888 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,888 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,889 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,890 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,891 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T20:34:58,892 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T20:34:58,892 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T20:34:58,893 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T20:34:58,894 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T20:34:58,895 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T20:34:58,895 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T20:34:58,896 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T20:34:58,896 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T20:34:58,897 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T20:34:58,898 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T20:34:58,898 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T20:34:58,899 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T20:34:58,900 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T20:34:58,901 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,901 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,902 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,903 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,904 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,905 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,905 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T20:34:58,906 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T20:34:58,907 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T20:34:58,907 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T20:34:58,908 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T20:34:58,909 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T20:34:58,909 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T20:34:58,910 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T20:34:58,911 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T20:34:58,911 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T20:34:58,912 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T20:34:58,913 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T20:34:58,914 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T20:34:58,915 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,915 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,916 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,917 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,917 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,918 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,919 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,919 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,920 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T20:34:58,921 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T20:34:58,922 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T20:34:58,922 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T20:34:58,923 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T20:34:58,924 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T20:34:58,924 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T20:34:58,925 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,926 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,926 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,927 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,928 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,929 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,929 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T20:34:58,930 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,931 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,932 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,932 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,933 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,934 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,935 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,935 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,936 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,937 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,937 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T20:34:58,938 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T20:34:58,939 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T20:34:58,940 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T20:34:58,941 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,941 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,942 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,942 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,943 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,944 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T20:34:58,945 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T20:34:58,945 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T20:34:58,946 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T20:34:58,947 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,948 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,948 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,949 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,950 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,950 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,951 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,952 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T20:34:58,953 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,953 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,954 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,955 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,956 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,956 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,957 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,958 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,958 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,959 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,960 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T20:34:58,961 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T20:34:58,961 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T20:34:58,962 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T20:34:58,963 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,964 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,964 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,965 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,966 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,967 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,967 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,968 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,969 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,969 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,970 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,971 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,972 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,972 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T20:34:58,973 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,974 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,975 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,975 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,976 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,977 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,977 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,978 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,979 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,980 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T20:34:58,981 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,981 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,982 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,983 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,984 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,984 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,985 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,986 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,987 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,987 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,988 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,989 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T20:34:58,990 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T20:34:58,990 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T20:34:58,991 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T20:34:58,992 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T20:34:58,992 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T20:34:58,993 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T20:34:58,994 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T20:34:58,994 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T20:34:58,995 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T20:34:58,996 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T20:34:58,996 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T20:34:58,997 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T20:34:58,998 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T20:34:58,998 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T20:34:58,999 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T20:34:59,000 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T20:34:59,001 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T20:34:59,001 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T20:34:59,002 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T20:34:59,003 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T20:34:59,004 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T20:34:59,005 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T20:34:59,005 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T20:34:59,006 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T20:34:59,007 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T20:34:59,007 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T20:34:59,008 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T20:34:59,009 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T20:34:59,009 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T20:34:59,010 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T20:34:59,011 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T20:34:59,011 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T20:34:59,012 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T20:34:59,013 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T20:34:59,013 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T20:34:59,014 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T20:34:59,015 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T20:34:59,016 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T20:34:59,017 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T20:34:59,017 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T20:34:59,018 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T20:34:59,019 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T20:34:59,020 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T20:34:59,020 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T20:34:59,021 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T20:34:59,022 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T20:34:59,023 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T20:34:59,023 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T20:34:59,024 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T20:34:59,025 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T20:34:59,026 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T20:34:59,026 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T20:34:59,027 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T20:34:59,028 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T20:34:59,028 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T20:34:59,029 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T20:34:59,030 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T20:34:59,031 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T20:34:59,032 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T20:34:59,033 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T20:34:59,033 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T20:34:59,034 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T20:34:59,034 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T20:34:59,035 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T20:34:59,035 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T20:34:59,036 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T20:34:59,036 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T20:34:59,037 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T20:34:59,037 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T20:34:59,038 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T20:34:59,038 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T20:34:59,039 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T20:34:59,040 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T20:34:59,041 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T20:34:59,041 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T20:34:59,041 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T20:34:59,042 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T20:34:59,042 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T20:34:59,043 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T20:34:59,044 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T20:34:59,044 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T20:34:59,045 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T20:34:59,045 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T20:34:59,046 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T20:34:59,046 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T20:34:59,047 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T20:34:59,047 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T20:34:59,048 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T20:34:59,048 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T20:34:59,049 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T20:34:59,049 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T20:34:59,050 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T20:34:59,051 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T20:34:59,052 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T20:34:59,052 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T20:34:59,053 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T20:34:59,053 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:34:59,054 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:34:59,054 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:34:59,055 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T20:34:59,055 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T20:34:59,056 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T20:34:59,056 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T20:34:59,057 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T20:34:59,058 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:34:59,058 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:34:59,058 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:34:59,059 running egg_info 2025-09-08T20:34:59,132 writing lightdock.egg-info/PKG-INFO 2025-09-08T20:34:59,133 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-08T20:34:59,134 writing requirements to lightdock.egg-info/requires.txt 2025-09-08T20:34:59,135 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-08T20:34:59,237 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T20:34:59,303 reading manifest template 'MANIFEST.in' 2025-09-08T20:34:59,378 adding license file 'LICENSE' 2025-09-08T20:34:59,437 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T20:34:59,440 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-08T20:34:59,440 !! 2025-09-08T20:34:59,440 ******************************************************************************** 2025-09-08T20:34:59,440 ############################ 2025-09-08T20:34:59,440 # Package would be ignored # 2025-09-08T20:34:59,440 ############################ 2025-09-08T20:34:59,440 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-08T20:34:59,440 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,441 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,441 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-08T20:34:59,441 to the `packages` configuration field. 2025-09-08T20:34:59,441 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,441 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,441 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,442 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,442 If you don't want 'lightdock.etc' to be distributed and are 2025-09-08T20:34:59,442 already explicitly excluding 'lightdock.etc' via 2025-09-08T20:34:59,442 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,442 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,442 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,443 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,443 even if it does not contain any `.py` files. 2025-09-08T20:34:59,443 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,443 directory, all directories are treated like packages. 2025-09-08T20:34:59,443 ******************************************************************************** 2025-09-08T20:34:59,443 !! 2025-09-08T20:34:59,443 check.warn(importable) 2025-09-08T20:34:59,444 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,444 !! 2025-09-08T20:34:59,444 ******************************************************************************** 2025-09-08T20:34:59,444 ############################ 2025-09-08T20:34:59,444 # Package would be ignored # 2025-09-08T20:34:59,444 ############################ 2025-09-08T20:34:59,444 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-08T20:34:59,444 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,444 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,445 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-08T20:34:59,445 to the `packages` configuration field. 2025-09-08T20:34:59,445 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,445 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,445 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,445 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,445 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,445 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-08T20:34:59,446 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-08T20:34:59,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,446 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,446 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,447 even if it does not contain any `.py` files. 2025-09-08T20:34:59,447 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,447 directory, all directories are treated like packages. 2025-09-08T20:34:59,447 ******************************************************************************** 2025-09-08T20:34:59,447 !! 2025-09-08T20:34:59,447 check.warn(importable) 2025-09-08T20:34:59,447 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,447 !! 2025-09-08T20:34:59,447 ******************************************************************************** 2025-09-08T20:34:59,447 ############################ 2025-09-08T20:34:59,448 # Package would be ignored # 2025-09-08T20:34:59,448 ############################ 2025-09-08T20:34:59,448 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-08T20:34:59,448 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,448 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,448 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-08T20:34:59,448 to the `packages` configuration field. 2025-09-08T20:34:59,448 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,449 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,449 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,449 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-08T20:34:59,449 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-08T20:34:59,449 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,449 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,450 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,450 even if it does not contain any `.py` files. 2025-09-08T20:34:59,450 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,450 directory, all directories are treated like packages. 2025-09-08T20:34:59,450 ******************************************************************************** 2025-09-08T20:34:59,450 !! 2025-09-08T20:34:59,451 check.warn(importable) 2025-09-08T20:34:59,451 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,451 !! 2025-09-08T20:34:59,451 ******************************************************************************** 2025-09-08T20:34:59,451 ############################ 2025-09-08T20:34:59,451 # Package would be ignored # 2025-09-08T20:34:59,451 ############################ 2025-09-08T20:34:59,451 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-08T20:34:59,451 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,452 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,452 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-08T20:34:59,452 to the `packages` configuration field. 2025-09-08T20:34:59,452 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,452 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,452 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,452 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,453 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-08T20:34:59,453 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-08T20:34:59,453 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,453 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,453 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,453 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,453 even if it does not contain any `.py` files. 2025-09-08T20:34:59,454 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,454 directory, all directories are treated like packages. 2025-09-08T20:34:59,454 ******************************************************************************** 2025-09-08T20:34:59,454 !! 2025-09-08T20:34:59,454 check.warn(importable) 2025-09-08T20:34:59,454 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,454 !! 2025-09-08T20:34:59,454 ******************************************************************************** 2025-09-08T20:34:59,454 ############################ 2025-09-08T20:34:59,455 # Package would be ignored # 2025-09-08T20:34:59,455 ############################ 2025-09-08T20:34:59,455 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-08T20:34:59,455 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,455 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,455 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-08T20:34:59,455 to the `packages` configuration field. 2025-09-08T20:34:59,455 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,455 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,456 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,456 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,456 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-08T20:34:59,456 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-08T20:34:59,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,456 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,457 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,457 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,457 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,457 even if it does not contain any `.py` files. 2025-09-08T20:34:59,457 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,457 directory, all directories are treated like packages. 2025-09-08T20:34:59,457 ******************************************************************************** 2025-09-08T20:34:59,458 !! 2025-09-08T20:34:59,458 check.warn(importable) 2025-09-08T20:34:59,458 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,458 !! 2025-09-08T20:34:59,458 ******************************************************************************** 2025-09-08T20:34:59,458 ############################ 2025-09-08T20:34:59,458 # Package would be ignored # 2025-09-08T20:34:59,458 ############################ 2025-09-08T20:34:59,458 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-08T20:34:59,459 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,459 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,459 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-08T20:34:59,459 to the `packages` configuration field. 2025-09-08T20:34:59,459 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,459 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,459 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,460 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-08T20:34:59,460 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-08T20:34:59,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,460 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,460 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,461 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,461 even if it does not contain any `.py` files. 2025-09-08T20:34:59,461 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,461 directory, all directories are treated like packages. 2025-09-08T20:34:59,461 ******************************************************************************** 2025-09-08T20:34:59,461 !! 2025-09-08T20:34:59,461 check.warn(importable) 2025-09-08T20:34:59,462 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-08T20:34:59,462 !! 2025-09-08T20:34:59,462 ******************************************************************************** 2025-09-08T20:34:59,462 ############################ 2025-09-08T20:34:59,462 # Package would be ignored # 2025-09-08T20:34:59,462 ############################ 2025-09-08T20:34:59,462 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-08T20:34:59,462 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,462 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,462 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-08T20:34:59,463 to the `packages` configuration field. 2025-09-08T20:34:59,463 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,463 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,463 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,463 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,463 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-08T20:34:59,464 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-08T20:34:59,464 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,464 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,464 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,464 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,465 even if it does not contain any `.py` files. 2025-09-08T20:34:59,465 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,465 directory, all directories are treated like packages. 2025-09-08T20:34:59,465 ******************************************************************************** 2025-09-08T20:34:59,465 !! 2025-09-08T20:34:59,465 check.warn(importable) 2025-09-08T20:34:59,465 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,465 !! 2025-09-08T20:34:59,465 ******************************************************************************** 2025-09-08T20:34:59,465 ############################ 2025-09-08T20:34:59,466 # Package would be ignored # 2025-09-08T20:34:59,466 ############################ 2025-09-08T20:34:59,466 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-08T20:34:59,466 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,466 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,466 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-08T20:34:59,466 to the `packages` configuration field. 2025-09-08T20:34:59,466 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,467 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,467 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,467 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-08T20:34:59,467 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-08T20:34:59,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,467 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,468 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,468 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,468 even if it does not contain any `.py` files. 2025-09-08T20:34:59,468 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,468 directory, all directories are treated like packages. 2025-09-08T20:34:59,468 ******************************************************************************** 2025-09-08T20:34:59,469 !! 2025-09-08T20:34:59,469 check.warn(importable) 2025-09-08T20:34:59,469 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,469 !! 2025-09-08T20:34:59,469 ******************************************************************************** 2025-09-08T20:34:59,469 ############################ 2025-09-08T20:34:59,469 # Package would be ignored # 2025-09-08T20:34:59,469 ############################ 2025-09-08T20:34:59,469 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-08T20:34:59,469 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,470 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,470 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-08T20:34:59,470 to the `packages` configuration field. 2025-09-08T20:34:59,470 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,470 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,470 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,470 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,471 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-08T20:34:59,471 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-08T20:34:59,471 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,471 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,471 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,471 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,471 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,472 even if it does not contain any `.py` files. 2025-09-08T20:34:59,472 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,472 directory, all directories are treated like packages. 2025-09-08T20:34:59,472 ******************************************************************************** 2025-09-08T20:34:59,472 !! 2025-09-08T20:34:59,472 check.warn(importable) 2025-09-08T20:34:59,473 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,473 !! 2025-09-08T20:34:59,473 ******************************************************************************** 2025-09-08T20:34:59,473 ############################ 2025-09-08T20:34:59,473 # Package would be ignored # 2025-09-08T20:34:59,473 ############################ 2025-09-08T20:34:59,473 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,473 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,474 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,474 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-08T20:34:59,474 to the `packages` configuration field. 2025-09-08T20:34:59,474 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,474 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,474 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,475 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,475 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-08T20:34:59,475 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,475 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,475 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,475 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,475 even if it does not contain any `.py` files. 2025-09-08T20:34:59,476 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,476 directory, all directories are treated like packages. 2025-09-08T20:34:59,476 ******************************************************************************** 2025-09-08T20:34:59,476 !! 2025-09-08T20:34:59,476 check.warn(importable) 2025-09-08T20:34:59,476 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T20:34:59,476 !! 2025-09-08T20:34:59,476 ******************************************************************************** 2025-09-08T20:34:59,476 ############################ 2025-09-08T20:34:59,476 # Package would be ignored # 2025-09-08T20:34:59,477 ############################ 2025-09-08T20:34:59,477 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-08T20:34:59,477 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,477 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,477 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-08T20:34:59,477 to the `packages` configuration field. 2025-09-08T20:34:59,477 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,477 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,478 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,478 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-08T20:34:59,478 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-08T20:34:59,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,478 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,478 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,478 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,479 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,479 even if it does not contain any `.py` files. 2025-09-08T20:34:59,479 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,479 directory, all directories are treated like packages. 2025-09-08T20:34:59,479 ******************************************************************************** 2025-09-08T20:34:59,479 !! 2025-09-08T20:34:59,479 check.warn(importable) 2025-09-08T20:34:59,479 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T20:34:59,479 !! 2025-09-08T20:34:59,480 ******************************************************************************** 2025-09-08T20:34:59,480 ############################ 2025-09-08T20:34:59,480 # Package would be ignored # 2025-09-08T20:34:59,480 ############################ 2025-09-08T20:34:59,480 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-08T20:34:59,480 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,480 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,480 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-08T20:34:59,480 to the `packages` configuration field. 2025-09-08T20:34:59,481 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,481 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,481 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,481 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-08T20:34:59,481 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-08T20:34:59,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,482 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,482 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,482 even if it does not contain any `.py` files. 2025-09-08T20:34:59,482 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,482 directory, all directories are treated like packages. 2025-09-08T20:34:59,482 ******************************************************************************** 2025-09-08T20:34:59,483 !! 2025-09-08T20:34:59,483 check.warn(importable) 2025-09-08T20:34:59,483 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T20:34:59,483 !! 2025-09-08T20:34:59,483 ******************************************************************************** 2025-09-08T20:34:59,483 ############################ 2025-09-08T20:34:59,483 # Package would be ignored # 2025-09-08T20:34:59,483 ############################ 2025-09-08T20:34:59,483 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-08T20:34:59,483 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,484 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,484 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-08T20:34:59,484 to the `packages` configuration field. 2025-09-08T20:34:59,484 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,484 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,484 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,485 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-08T20:34:59,485 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-08T20:34:59,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,485 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,485 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,486 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,486 even if it does not contain any `.py` files. 2025-09-08T20:34:59,486 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,486 directory, all directories are treated like packages. 2025-09-08T20:34:59,486 ******************************************************************************** 2025-09-08T20:34:59,486 !! 2025-09-08T20:34:59,486 check.warn(importable) 2025-09-08T20:34:59,486 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T20:34:59,486 !! 2025-09-08T20:34:59,487 ******************************************************************************** 2025-09-08T20:34:59,487 ############################ 2025-09-08T20:34:59,487 # Package would be ignored # 2025-09-08T20:34:59,487 ############################ 2025-09-08T20:34:59,487 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-08T20:34:59,487 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,487 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,487 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-08T20:34:59,487 to the `packages` configuration field. 2025-09-08T20:34:59,487 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,488 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,488 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,488 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-08T20:34:59,488 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-08T20:34:59,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,488 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,489 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,489 even if it does not contain any `.py` files. 2025-09-08T20:34:59,489 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,489 directory, all directories are treated like packages. 2025-09-08T20:34:59,489 ******************************************************************************** 2025-09-08T20:34:59,490 !! 2025-09-08T20:34:59,490 check.warn(importable) 2025-09-08T20:34:59,490 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,490 !! 2025-09-08T20:34:59,490 ******************************************************************************** 2025-09-08T20:34:59,490 ############################ 2025-09-08T20:34:59,490 # Package would be ignored # 2025-09-08T20:34:59,490 ############################ 2025-09-08T20:34:59,490 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-08T20:34:59,490 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,490 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,491 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-08T20:34:59,491 to the `packages` configuration field. 2025-09-08T20:34:59,491 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,491 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,491 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,491 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-08T20:34:59,492 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-08T20:34:59,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,492 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,492 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,492 even if it does not contain any `.py` files. 2025-09-08T20:34:59,493 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,493 directory, all directories are treated like packages. 2025-09-08T20:34:59,493 ******************************************************************************** 2025-09-08T20:34:59,493 !! 2025-09-08T20:34:59,493 check.warn(importable) 2025-09-08T20:34:59,493 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,493 !! 2025-09-08T20:34:59,493 ******************************************************************************** 2025-09-08T20:34:59,493 ############################ 2025-09-08T20:34:59,493 # Package would be ignored # 2025-09-08T20:34:59,494 ############################ 2025-09-08T20:34:59,494 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,494 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,494 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,494 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-08T20:34:59,494 to the `packages` configuration field. 2025-09-08T20:34:59,494 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,494 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,495 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,495 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-08T20:34:59,495 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-08T20:34:59,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,495 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,495 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,495 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,496 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,496 even if it does not contain any `.py` files. 2025-09-08T20:34:59,496 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,496 directory, all directories are treated like packages. 2025-09-08T20:34:59,496 ******************************************************************************** 2025-09-08T20:34:59,496 !! 2025-09-08T20:34:59,496 check.warn(importable) 2025-09-08T20:34:59,497 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,497 !! 2025-09-08T20:34:59,497 ******************************************************************************** 2025-09-08T20:34:59,497 ############################ 2025-09-08T20:34:59,497 # Package would be ignored # 2025-09-08T20:34:59,497 ############################ 2025-09-08T20:34:59,497 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,497 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,497 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,497 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,498 to the `packages` configuration field. 2025-09-08T20:34:59,498 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,498 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,498 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,498 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,498 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-08T20:34:59,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,499 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,499 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,499 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,499 even if it does not contain any `.py` files. 2025-09-08T20:34:59,500 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,500 directory, all directories are treated like packages. 2025-09-08T20:34:59,500 ******************************************************************************** 2025-09-08T20:34:59,500 !! 2025-09-08T20:34:59,500 check.warn(importable) 2025-09-08T20:34:59,500 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,500 !! 2025-09-08T20:34:59,500 ******************************************************************************** 2025-09-08T20:34:59,500 ############################ 2025-09-08T20:34:59,500 # Package would be ignored # 2025-09-08T20:34:59,500 ############################ 2025-09-08T20:34:59,501 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-08T20:34:59,501 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,501 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,501 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-08T20:34:59,501 to the `packages` configuration field. 2025-09-08T20:34:59,501 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,501 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,501 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,502 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-08T20:34:59,502 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-08T20:34:59,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,502 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,502 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,502 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,503 even if it does not contain any `.py` files. 2025-09-08T20:34:59,503 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,503 directory, all directories are treated like packages. 2025-09-08T20:34:59,503 ******************************************************************************** 2025-09-08T20:34:59,503 !! 2025-09-08T20:34:59,503 check.warn(importable) 2025-09-08T20:34:59,503 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,503 !! 2025-09-08T20:34:59,504 ******************************************************************************** 2025-09-08T20:34:59,504 ############################ 2025-09-08T20:34:59,504 # Package would be ignored # 2025-09-08T20:34:59,504 ############################ 2025-09-08T20:34:59,504 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-08T20:34:59,504 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,504 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,504 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-08T20:34:59,504 to the `packages` configuration field. 2025-09-08T20:34:59,505 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,505 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,505 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,505 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,505 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-08T20:34:59,505 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-08T20:34:59,505 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,505 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,505 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,506 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,506 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,506 even if it does not contain any `.py` files. 2025-09-08T20:34:59,506 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,506 directory, all directories are treated like packages. 2025-09-08T20:34:59,506 ******************************************************************************** 2025-09-08T20:34:59,507 !! 2025-09-08T20:34:59,507 check.warn(importable) 2025-09-08T20:34:59,507 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,507 !! 2025-09-08T20:34:59,507 ******************************************************************************** 2025-09-08T20:34:59,507 ############################ 2025-09-08T20:34:59,507 # Package would be ignored # 2025-09-08T20:34:59,507 ############################ 2025-09-08T20:34:59,507 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,507 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,508 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,508 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-08T20:34:59,508 to the `packages` configuration field. 2025-09-08T20:34:59,508 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,508 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,508 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,508 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,509 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,509 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-08T20:34:59,509 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,509 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,509 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,510 even if it does not contain any `.py` files. 2025-09-08T20:34:59,510 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,510 directory, all directories are treated like packages. 2025-09-08T20:34:59,510 ******************************************************************************** 2025-09-08T20:34:59,510 !! 2025-09-08T20:34:59,510 check.warn(importable) 2025-09-08T20:34:59,510 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,510 !! 2025-09-08T20:34:59,510 ******************************************************************************** 2025-09-08T20:34:59,511 ############################ 2025-09-08T20:34:59,511 # Package would be ignored # 2025-09-08T20:34:59,511 ############################ 2025-09-08T20:34:59,511 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-08T20:34:59,511 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,511 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,511 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-08T20:34:59,511 to the `packages` configuration field. 2025-09-08T20:34:59,511 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,512 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,512 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,512 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-08T20:34:59,512 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-08T20:34:59,512 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,512 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,512 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,513 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,513 even if it does not contain any `.py` files. 2025-09-08T20:34:59,513 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,513 directory, all directories are treated like packages. 2025-09-08T20:34:59,513 ******************************************************************************** 2025-09-08T20:34:59,514 !! 2025-09-08T20:34:59,514 check.warn(importable) 2025-09-08T20:34:59,514 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,514 !! 2025-09-08T20:34:59,514 ******************************************************************************** 2025-09-08T20:34:59,514 ############################ 2025-09-08T20:34:59,514 # Package would be ignored # 2025-09-08T20:34:59,514 ############################ 2025-09-08T20:34:59,514 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-08T20:34:59,514 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,515 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,515 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-08T20:34:59,515 to the `packages` configuration field. 2025-09-08T20:34:59,515 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,515 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,515 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,515 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,515 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-08T20:34:59,516 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-08T20:34:59,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,516 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,516 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,516 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,516 even if it does not contain any `.py` files. 2025-09-08T20:34:59,517 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,517 directory, all directories are treated like packages. 2025-09-08T20:34:59,517 ******************************************************************************** 2025-09-08T20:34:59,517 !! 2025-09-08T20:34:59,517 check.warn(importable) 2025-09-08T20:34:59,517 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,517 !! 2025-09-08T20:34:59,517 ******************************************************************************** 2025-09-08T20:34:59,517 ############################ 2025-09-08T20:34:59,517 # Package would be ignored # 2025-09-08T20:34:59,518 ############################ 2025-09-08T20:34:59,518 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,518 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,518 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,518 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-08T20:34:59,518 to the `packages` configuration field. 2025-09-08T20:34:59,518 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,518 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,518 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,519 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,519 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-08T20:34:59,519 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,519 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,519 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,519 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,520 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,520 even if it does not contain any `.py` files. 2025-09-08T20:34:59,520 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,520 directory, all directories are treated like packages. 2025-09-08T20:34:59,520 ******************************************************************************** 2025-09-08T20:34:59,520 !! 2025-09-08T20:34:59,520 check.warn(importable) 2025-09-08T20:34:59,520 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T20:34:59,520 !! 2025-09-08T20:34:59,521 ******************************************************************************** 2025-09-08T20:34:59,521 ############################ 2025-09-08T20:34:59,521 # Package would be ignored # 2025-09-08T20:34:59,521 ############################ 2025-09-08T20:34:59,521 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-08T20:34:59,521 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,521 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,521 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-08T20:34:59,521 to the `packages` configuration field. 2025-09-08T20:34:59,522 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,522 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,522 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,522 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,522 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-08T20:34:59,522 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-08T20:34:59,522 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,523 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,523 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,523 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,523 even if it does not contain any `.py` files. 2025-09-08T20:34:59,523 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,524 directory, all directories are treated like packages. 2025-09-08T20:34:59,524 ******************************************************************************** 2025-09-08T20:34:59,524 !! 2025-09-08T20:34:59,524 check.warn(importable) 2025-09-08T20:34:59,524 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T20:34:59,524 !! 2025-09-08T20:34:59,524 ******************************************************************************** 2025-09-08T20:34:59,524 ############################ 2025-09-08T20:34:59,524 # Package would be ignored # 2025-09-08T20:34:59,524 ############################ 2025-09-08T20:34:59,525 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-08T20:34:59,525 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,525 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,525 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-08T20:34:59,525 to the `packages` configuration field. 2025-09-08T20:34:59,525 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,525 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,525 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,526 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-08T20:34:59,526 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-08T20:34:59,526 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,526 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,526 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,526 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,527 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,527 even if it does not contain any `.py` files. 2025-09-08T20:34:59,527 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,527 directory, all directories are treated like packages. 2025-09-08T20:34:59,527 ******************************************************************************** 2025-09-08T20:34:59,527 !! 2025-09-08T20:34:59,527 check.warn(importable) 2025-09-08T20:34:59,527 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T20:34:59,527 !! 2025-09-08T20:34:59,528 ******************************************************************************** 2025-09-08T20:34:59,528 ############################ 2025-09-08T20:34:59,528 # Package would be ignored # 2025-09-08T20:34:59,528 ############################ 2025-09-08T20:34:59,528 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-08T20:34:59,528 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,528 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,528 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-08T20:34:59,528 to the `packages` configuration field. 2025-09-08T20:34:59,528 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,529 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,529 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,529 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-08T20:34:59,529 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-08T20:34:59,529 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,529 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,530 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,530 even if it does not contain any `.py` files. 2025-09-08T20:34:59,530 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,530 directory, all directories are treated like packages. 2025-09-08T20:34:59,530 ******************************************************************************** 2025-09-08T20:34:59,531 !! 2025-09-08T20:34:59,531 check.warn(importable) 2025-09-08T20:34:59,531 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T20:34:59,531 !! 2025-09-08T20:34:59,531 ******************************************************************************** 2025-09-08T20:34:59,531 ############################ 2025-09-08T20:34:59,531 # Package would be ignored # 2025-09-08T20:34:59,531 ############################ 2025-09-08T20:34:59,531 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-08T20:34:59,531 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,531 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,532 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-08T20:34:59,532 to the `packages` configuration field. 2025-09-08T20:34:59,532 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,532 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,532 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,532 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-08T20:34:59,533 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-08T20:34:59,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,533 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,533 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,533 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,534 even if it does not contain any `.py` files. 2025-09-08T20:34:59,534 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,534 directory, all directories are treated like packages. 2025-09-08T20:34:59,534 ******************************************************************************** 2025-09-08T20:34:59,534 !! 2025-09-08T20:34:59,534 check.warn(importable) 2025-09-08T20:34:59,534 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,534 !! 2025-09-08T20:34:59,534 ******************************************************************************** 2025-09-08T20:34:59,535 ############################ 2025-09-08T20:34:59,535 # Package would be ignored # 2025-09-08T20:34:59,535 ############################ 2025-09-08T20:34:59,535 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-08T20:34:59,535 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,535 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,535 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-08T20:34:59,535 to the `packages` configuration field. 2025-09-08T20:34:59,535 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,536 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,536 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,536 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-08T20:34:59,536 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-08T20:34:59,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,536 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,536 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,537 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,537 even if it does not contain any `.py` files. 2025-09-08T20:34:59,537 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,537 directory, all directories are treated like packages. 2025-09-08T20:34:59,537 ******************************************************************************** 2025-09-08T20:34:59,537 !! 2025-09-08T20:34:59,538 check.warn(importable) 2025-09-08T20:34:59,538 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,538 !! 2025-09-08T20:34:59,538 ******************************************************************************** 2025-09-08T20:34:59,538 ############################ 2025-09-08T20:34:59,538 # Package would be ignored # 2025-09-08T20:34:59,538 ############################ 2025-09-08T20:34:59,538 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-08T20:34:59,538 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,538 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,539 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-08T20:34:59,539 to the `packages` configuration field. 2025-09-08T20:34:59,539 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,539 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,539 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,539 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-08T20:34:59,540 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-08T20:34:59,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,540 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,540 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,540 even if it does not contain any `.py` files. 2025-09-08T20:34:59,540 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,541 directory, all directories are treated like packages. 2025-09-08T20:34:59,541 ******************************************************************************** 2025-09-08T20:34:59,541 !! 2025-09-08T20:34:59,541 check.warn(importable) 2025-09-08T20:34:59,541 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,541 !! 2025-09-08T20:34:59,541 ******************************************************************************** 2025-09-08T20:34:59,541 ############################ 2025-09-08T20:34:59,541 # Package would be ignored # 2025-09-08T20:34:59,541 ############################ 2025-09-08T20:34:59,542 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,542 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,542 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,542 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-08T20:34:59,542 to the `packages` configuration field. 2025-09-08T20:34:59,542 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,542 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,542 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,543 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,543 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,543 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-08T20:34:59,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,543 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,543 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,544 even if it does not contain any `.py` files. 2025-09-08T20:34:59,544 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,544 directory, all directories are treated like packages. 2025-09-08T20:34:59,544 ******************************************************************************** 2025-09-08T20:34:59,544 !! 2025-09-08T20:34:59,544 check.warn(importable) 2025-09-08T20:34:59,544 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,545 !! 2025-09-08T20:34:59,545 ******************************************************************************** 2025-09-08T20:34:59,545 ############################ 2025-09-08T20:34:59,545 # Package would be ignored # 2025-09-08T20:34:59,545 ############################ 2025-09-08T20:34:59,545 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-08T20:34:59,545 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,545 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,545 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-08T20:34:59,545 to the `packages` configuration field. 2025-09-08T20:34:59,546 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,546 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,546 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,546 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-08T20:34:59,546 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-08T20:34:59,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,547 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,547 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,547 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,547 even if it does not contain any `.py` files. 2025-09-08T20:34:59,548 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,548 directory, all directories are treated like packages. 2025-09-08T20:34:59,548 ******************************************************************************** 2025-09-08T20:34:59,548 !! 2025-09-08T20:34:59,548 check.warn(importable) 2025-09-08T20:34:59,548 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,548 !! 2025-09-08T20:34:59,548 ******************************************************************************** 2025-09-08T20:34:59,548 ############################ 2025-09-08T20:34:59,548 # Package would be ignored # 2025-09-08T20:34:59,549 ############################ 2025-09-08T20:34:59,549 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,549 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,549 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,549 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-08T20:34:59,549 to the `packages` configuration field. 2025-09-08T20:34:59,549 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,549 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,550 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,550 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-08T20:34:59,550 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-08T20:34:59,550 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,550 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,550 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,551 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,551 even if it does not contain any `.py` files. 2025-09-08T20:34:59,551 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,551 directory, all directories are treated like packages. 2025-09-08T20:34:59,551 ******************************************************************************** 2025-09-08T20:34:59,551 !! 2025-09-08T20:34:59,551 check.warn(importable) 2025-09-08T20:34:59,552 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,552 !! 2025-09-08T20:34:59,552 ******************************************************************************** 2025-09-08T20:34:59,552 ############################ 2025-09-08T20:34:59,552 # Package would be ignored # 2025-09-08T20:34:59,552 ############################ 2025-09-08T20:34:59,552 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,552 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,552 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,553 to the `packages` configuration field. 2025-09-08T20:34:59,553 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,553 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,553 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,553 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,553 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-08T20:34:59,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,554 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,554 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,554 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,554 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,554 even if it does not contain any `.py` files. 2025-09-08T20:34:59,554 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,555 directory, all directories are treated like packages. 2025-09-08T20:34:59,555 ******************************************************************************** 2025-09-08T20:34:59,555 !! 2025-09-08T20:34:59,555 check.warn(importable) 2025-09-08T20:34:59,555 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,555 !! 2025-09-08T20:34:59,555 ******************************************************************************** 2025-09-08T20:34:59,555 ############################ 2025-09-08T20:34:59,555 # Package would be ignored # 2025-09-08T20:34:59,555 ############################ 2025-09-08T20:34:59,556 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-08T20:34:59,556 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,556 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,556 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-08T20:34:59,556 to the `packages` configuration field. 2025-09-08T20:34:59,556 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,556 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,556 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,557 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-08T20:34:59,557 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-08T20:34:59,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,557 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,557 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,557 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,558 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,558 even if it does not contain any `.py` files. 2025-09-08T20:34:59,558 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,558 directory, all directories are treated like packages. 2025-09-08T20:34:59,558 ******************************************************************************** 2025-09-08T20:34:59,558 !! 2025-09-08T20:34:59,558 check.warn(importable) 2025-09-08T20:34:59,558 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,558 !! 2025-09-08T20:34:59,559 ******************************************************************************** 2025-09-08T20:34:59,559 ############################ 2025-09-08T20:34:59,559 # Package would be ignored # 2025-09-08T20:34:59,559 ############################ 2025-09-08T20:34:59,559 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-08T20:34:59,559 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,559 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,559 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-08T20:34:59,559 to the `packages` configuration field. 2025-09-08T20:34:59,560 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,560 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,560 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,560 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-08T20:34:59,560 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-08T20:34:59,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,561 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,561 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,561 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,561 even if it does not contain any `.py` files. 2025-09-08T20:34:59,561 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,561 directory, all directories are treated like packages. 2025-09-08T20:34:59,562 ******************************************************************************** 2025-09-08T20:34:59,562 !! 2025-09-08T20:34:59,562 check.warn(importable) 2025-09-08T20:34:59,562 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,562 !! 2025-09-08T20:34:59,562 ******************************************************************************** 2025-09-08T20:34:59,562 ############################ 2025-09-08T20:34:59,562 # Package would be ignored # 2025-09-08T20:34:59,562 ############################ 2025-09-08T20:34:59,562 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,563 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,563 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,563 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-08T20:34:59,563 to the `packages` configuration field. 2025-09-08T20:34:59,563 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,563 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,563 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,564 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,564 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,564 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-08T20:34:59,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,564 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,564 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,565 even if it does not contain any `.py` files. 2025-09-08T20:34:59,565 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,565 directory, all directories are treated like packages. 2025-09-08T20:34:59,565 ******************************************************************************** 2025-09-08T20:34:59,565 !! 2025-09-08T20:34:59,565 check.warn(importable) 2025-09-08T20:34:59,565 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,565 !! 2025-09-08T20:34:59,566 ******************************************************************************** 2025-09-08T20:34:59,566 ############################ 2025-09-08T20:34:59,566 # Package would be ignored # 2025-09-08T20:34:59,566 ############################ 2025-09-08T20:34:59,566 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-08T20:34:59,566 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,566 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,566 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-08T20:34:59,566 to the `packages` configuration field. 2025-09-08T20:34:59,566 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,567 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,567 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,567 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-08T20:34:59,567 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-08T20:34:59,567 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,567 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,567 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,568 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,568 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,568 even if it does not contain any `.py` files. 2025-09-08T20:34:59,568 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,568 directory, all directories are treated like packages. 2025-09-08T20:34:59,568 ******************************************************************************** 2025-09-08T20:34:59,568 !! 2025-09-08T20:34:59,569 check.warn(importable) 2025-09-08T20:34:59,569 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,569 !! 2025-09-08T20:34:59,569 ******************************************************************************** 2025-09-08T20:34:59,569 ############################ 2025-09-08T20:34:59,569 # Package would be ignored # 2025-09-08T20:34:59,569 ############################ 2025-09-08T20:34:59,569 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-08T20:34:59,569 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,569 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,570 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-08T20:34:59,570 to the `packages` configuration field. 2025-09-08T20:34:59,570 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,570 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,570 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,570 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-08T20:34:59,571 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-08T20:34:59,571 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,571 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,571 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,571 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,572 even if it does not contain any `.py` files. 2025-09-08T20:34:59,572 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,572 directory, all directories are treated like packages. 2025-09-08T20:34:59,572 ******************************************************************************** 2025-09-08T20:34:59,572 !! 2025-09-08T20:34:59,572 check.warn(importable) 2025-09-08T20:34:59,572 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,572 !! 2025-09-08T20:34:59,572 ******************************************************************************** 2025-09-08T20:34:59,572 ############################ 2025-09-08T20:34:59,573 # Package would be ignored # 2025-09-08T20:34:59,573 ############################ 2025-09-08T20:34:59,573 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,573 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,573 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,573 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-08T20:34:59,573 to the `packages` configuration field. 2025-09-08T20:34:59,573 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,574 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,574 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,574 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,574 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-08T20:34:59,574 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,574 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,575 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,575 even if it does not contain any `.py` files. 2025-09-08T20:34:59,575 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,575 directory, all directories are treated like packages. 2025-09-08T20:34:59,575 ******************************************************************************** 2025-09-08T20:34:59,575 !! 2025-09-08T20:34:59,576 check.warn(importable) 2025-09-08T20:34:59,576 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T20:34:59,576 !! 2025-09-08T20:34:59,576 ******************************************************************************** 2025-09-08T20:34:59,576 ############################ 2025-09-08T20:34:59,576 # Package would be ignored # 2025-09-08T20:34:59,576 ############################ 2025-09-08T20:34:59,576 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-08T20:34:59,576 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,576 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,577 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-08T20:34:59,577 to the `packages` configuration field. 2025-09-08T20:34:59,577 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,577 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,577 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,577 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-08T20:34:59,578 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-08T20:34:59,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,578 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,578 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,578 even if it does not contain any `.py` files. 2025-09-08T20:34:59,579 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,579 directory, all directories are treated like packages. 2025-09-08T20:34:59,579 ******************************************************************************** 2025-09-08T20:34:59,579 !! 2025-09-08T20:34:59,579 check.warn(importable) 2025-09-08T20:34:59,579 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T20:34:59,579 !! 2025-09-08T20:34:59,579 ******************************************************************************** 2025-09-08T20:34:59,579 ############################ 2025-09-08T20:34:59,579 # Package would be ignored # 2025-09-08T20:34:59,579 ############################ 2025-09-08T20:34:59,580 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-08T20:34:59,580 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,580 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,580 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-08T20:34:59,580 to the `packages` configuration field. 2025-09-08T20:34:59,580 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,580 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,580 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,581 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-08T20:34:59,581 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-08T20:34:59,581 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,581 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,581 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,581 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,582 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,582 even if it does not contain any `.py` files. 2025-09-08T20:34:59,582 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,582 directory, all directories are treated like packages. 2025-09-08T20:34:59,582 ******************************************************************************** 2025-09-08T20:34:59,582 !! 2025-09-08T20:34:59,582 check.warn(importable) 2025-09-08T20:34:59,582 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T20:34:59,582 !! 2025-09-08T20:34:59,583 ******************************************************************************** 2025-09-08T20:34:59,583 ############################ 2025-09-08T20:34:59,583 # Package would be ignored # 2025-09-08T20:34:59,583 ############################ 2025-09-08T20:34:59,583 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-08T20:34:59,583 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,583 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,583 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-08T20:34:59,583 to the `packages` configuration field. 2025-09-08T20:34:59,584 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,584 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,584 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,584 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,584 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,584 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-08T20:34:59,584 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-08T20:34:59,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,585 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,585 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,585 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,585 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,585 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,585 even if it does not contain any `.py` files. 2025-09-08T20:34:59,585 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,586 directory, all directories are treated like packages. 2025-09-08T20:34:59,586 ******************************************************************************** 2025-09-08T20:34:59,586 !! 2025-09-08T20:34:59,586 check.warn(importable) 2025-09-08T20:34:59,586 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T20:34:59,586 !! 2025-09-08T20:34:59,586 ******************************************************************************** 2025-09-08T20:34:59,586 ############################ 2025-09-08T20:34:59,586 # Package would be ignored # 2025-09-08T20:34:59,586 ############################ 2025-09-08T20:34:59,587 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-08T20:34:59,587 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,587 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,587 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-08T20:34:59,587 to the `packages` configuration field. 2025-09-08T20:34:59,587 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,587 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,587 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,588 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-08T20:34:59,588 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-08T20:34:59,588 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,588 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,588 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,589 even if it does not contain any `.py` files. 2025-09-08T20:34:59,589 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,589 directory, all directories are treated like packages. 2025-09-08T20:34:59,589 ******************************************************************************** 2025-09-08T20:34:59,589 !! 2025-09-08T20:34:59,589 check.warn(importable) 2025-09-08T20:34:59,589 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,589 !! 2025-09-08T20:34:59,590 ******************************************************************************** 2025-09-08T20:34:59,590 ############################ 2025-09-08T20:34:59,590 # Package would be ignored # 2025-09-08T20:34:59,590 ############################ 2025-09-08T20:34:59,590 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-08T20:34:59,590 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,590 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,590 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-08T20:34:59,590 to the `packages` configuration field. 2025-09-08T20:34:59,590 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,591 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,591 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,591 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-08T20:34:59,591 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-08T20:34:59,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,591 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,592 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,592 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,592 even if it does not contain any `.py` files. 2025-09-08T20:34:59,592 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,592 directory, all directories are treated like packages. 2025-09-08T20:34:59,592 ******************************************************************************** 2025-09-08T20:34:59,593 !! 2025-09-08T20:34:59,593 check.warn(importable) 2025-09-08T20:34:59,593 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,593 !! 2025-09-08T20:34:59,593 ******************************************************************************** 2025-09-08T20:34:59,593 ############################ 2025-09-08T20:34:59,593 # Package would be ignored # 2025-09-08T20:34:59,593 ############################ 2025-09-08T20:34:59,593 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,593 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,594 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,594 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-08T20:34:59,594 to the `packages` configuration field. 2025-09-08T20:34:59,594 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,594 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,594 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,595 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-08T20:34:59,595 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-08T20:34:59,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,595 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,595 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,595 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,595 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,595 even if it does not contain any `.py` files. 2025-09-08T20:34:59,596 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,596 directory, all directories are treated like packages. 2025-09-08T20:34:59,596 ******************************************************************************** 2025-09-08T20:34:59,596 !! 2025-09-08T20:34:59,596 check.warn(importable) 2025-09-08T20:34:59,596 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,596 !! 2025-09-08T20:34:59,596 ******************************************************************************** 2025-09-08T20:34:59,597 ############################ 2025-09-08T20:34:59,597 # Package would be ignored # 2025-09-08T20:34:59,597 ############################ 2025-09-08T20:34:59,597 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,597 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,597 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,597 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,597 to the `packages` configuration field. 2025-09-08T20:34:59,597 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,598 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,598 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,598 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,598 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,598 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-08T20:34:59,598 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,598 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,599 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,599 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,599 even if it does not contain any `.py` files. 2025-09-08T20:34:59,599 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,599 directory, all directories are treated like packages. 2025-09-08T20:34:59,599 ******************************************************************************** 2025-09-08T20:34:59,599 !! 2025-09-08T20:34:59,600 check.warn(importable) 2025-09-08T20:34:59,600 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,600 !! 2025-09-08T20:34:59,600 ******************************************************************************** 2025-09-08T20:34:59,600 ############################ 2025-09-08T20:34:59,600 # Package would be ignored # 2025-09-08T20:34:59,600 ############################ 2025-09-08T20:34:59,600 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-08T20:34:59,600 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,600 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,601 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-08T20:34:59,601 to the `packages` configuration field. 2025-09-08T20:34:59,601 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,601 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,601 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,601 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,601 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-08T20:34:59,602 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-08T20:34:59,602 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,602 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,602 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,602 even if it does not contain any `.py` files. 2025-09-08T20:34:59,603 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,603 directory, all directories are treated like packages. 2025-09-08T20:34:59,603 ******************************************************************************** 2025-09-08T20:34:59,603 !! 2025-09-08T20:34:59,603 check.warn(importable) 2025-09-08T20:34:59,603 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,603 !! 2025-09-08T20:34:59,603 ******************************************************************************** 2025-09-08T20:34:59,603 ############################ 2025-09-08T20:34:59,603 # Package would be ignored # 2025-09-08T20:34:59,604 ############################ 2025-09-08T20:34:59,604 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-08T20:34:59,604 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,604 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,604 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-08T20:34:59,604 to the `packages` configuration field. 2025-09-08T20:34:59,604 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,604 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,605 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,605 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-08T20:34:59,605 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-08T20:34:59,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,605 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,605 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,605 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,606 even if it does not contain any `.py` files. 2025-09-08T20:34:59,606 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,606 directory, all directories are treated like packages. 2025-09-08T20:34:59,606 ******************************************************************************** 2025-09-08T20:34:59,606 !! 2025-09-08T20:34:59,606 check.warn(importable) 2025-09-08T20:34:59,606 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,607 !! 2025-09-08T20:34:59,607 ******************************************************************************** 2025-09-08T20:34:59,607 ############################ 2025-09-08T20:34:59,607 # Package would be ignored # 2025-09-08T20:34:59,607 ############################ 2025-09-08T20:34:59,607 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,607 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,607 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,607 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-08T20:34:59,607 to the `packages` configuration field. 2025-09-08T20:34:59,608 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,608 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,608 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,608 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,608 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-08T20:34:59,608 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,609 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,609 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,609 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,609 even if it does not contain any `.py` files. 2025-09-08T20:34:59,609 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,610 directory, all directories are treated like packages. 2025-09-08T20:34:59,610 ******************************************************************************** 2025-09-08T20:34:59,610 !! 2025-09-08T20:34:59,610 check.warn(importable) 2025-09-08T20:34:59,610 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,610 !! 2025-09-08T20:34:59,610 ******************************************************************************** 2025-09-08T20:34:59,610 ############################ 2025-09-08T20:34:59,610 # Package would be ignored # 2025-09-08T20:34:59,610 ############################ 2025-09-08T20:34:59,611 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-08T20:34:59,611 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,611 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,611 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-08T20:34:59,611 to the `packages` configuration field. 2025-09-08T20:34:59,611 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,611 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,611 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,612 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,612 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-08T20:34:59,612 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-08T20:34:59,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,612 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,612 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,613 even if it does not contain any `.py` files. 2025-09-08T20:34:59,613 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,613 directory, all directories are treated like packages. 2025-09-08T20:34:59,613 ******************************************************************************** 2025-09-08T20:34:59,613 !! 2025-09-08T20:34:59,613 check.warn(importable) 2025-09-08T20:34:59,613 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,613 !! 2025-09-08T20:34:59,614 ******************************************************************************** 2025-09-08T20:34:59,614 ############################ 2025-09-08T20:34:59,614 # Package would be ignored # 2025-09-08T20:34:59,614 ############################ 2025-09-08T20:34:59,614 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-08T20:34:59,614 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,614 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,614 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-08T20:34:59,614 to the `packages` configuration field. 2025-09-08T20:34:59,615 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,615 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,615 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,615 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-08T20:34:59,615 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-08T20:34:59,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,615 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,616 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,616 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,616 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,616 even if it does not contain any `.py` files. 2025-09-08T20:34:59,616 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,616 directory, all directories are treated like packages. 2025-09-08T20:34:59,616 ******************************************************************************** 2025-09-08T20:34:59,617 !! 2025-09-08T20:34:59,617 check.warn(importable) 2025-09-08T20:34:59,617 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,617 !! 2025-09-08T20:34:59,617 ******************************************************************************** 2025-09-08T20:34:59,617 ############################ 2025-09-08T20:34:59,617 # Package would be ignored # 2025-09-08T20:34:59,617 ############################ 2025-09-08T20:34:59,617 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,617 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,618 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,618 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-08T20:34:59,618 to the `packages` configuration field. 2025-09-08T20:34:59,618 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,618 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,618 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,618 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,619 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,619 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-08T20:34:59,619 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,619 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,619 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,619 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,620 even if it does not contain any `.py` files. 2025-09-08T20:34:59,620 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,620 directory, all directories are treated like packages. 2025-09-08T20:34:59,620 ******************************************************************************** 2025-09-08T20:34:59,620 !! 2025-09-08T20:34:59,620 check.warn(importable) 2025-09-08T20:34:59,620 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,620 !! 2025-09-08T20:34:59,620 ******************************************************************************** 2025-09-08T20:34:59,620 ############################ 2025-09-08T20:34:59,621 # Package would be ignored # 2025-09-08T20:34:59,621 ############################ 2025-09-08T20:34:59,621 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-08T20:34:59,621 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,621 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,621 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-08T20:34:59,621 to the `packages` configuration field. 2025-09-08T20:34:59,621 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,621 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,622 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,622 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,622 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-08T20:34:59,622 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-08T20:34:59,622 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,622 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,623 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,623 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,623 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,623 even if it does not contain any `.py` files. 2025-09-08T20:34:59,623 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,623 directory, all directories are treated like packages. 2025-09-08T20:34:59,623 ******************************************************************************** 2025-09-08T20:34:59,624 !! 2025-09-08T20:34:59,624 check.warn(importable) 2025-09-08T20:34:59,624 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,624 !! 2025-09-08T20:34:59,624 ******************************************************************************** 2025-09-08T20:34:59,624 ############################ 2025-09-08T20:34:59,624 # Package would be ignored # 2025-09-08T20:34:59,624 ############################ 2025-09-08T20:34:59,624 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-08T20:34:59,624 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,625 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,625 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-08T20:34:59,625 to the `packages` configuration field. 2025-09-08T20:34:59,625 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,625 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,625 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,625 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,625 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,625 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-08T20:34:59,626 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-08T20:34:59,626 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,626 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,626 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,626 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,626 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,626 even if it does not contain any `.py` files. 2025-09-08T20:34:59,627 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,627 directory, all directories are treated like packages. 2025-09-08T20:34:59,627 ******************************************************************************** 2025-09-08T20:34:59,627 !! 2025-09-08T20:34:59,627 check.warn(importable) 2025-09-08T20:34:59,627 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,627 !! 2025-09-08T20:34:59,627 ******************************************************************************** 2025-09-08T20:34:59,627 ############################ 2025-09-08T20:34:59,627 # Package would be ignored # 2025-09-08T20:34:59,628 ############################ 2025-09-08T20:34:59,628 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,628 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,628 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,628 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-08T20:34:59,628 to the `packages` configuration field. 2025-09-08T20:34:59,628 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,628 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,628 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,629 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,629 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,629 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-08T20:34:59,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,629 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,629 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,630 even if it does not contain any `.py` files. 2025-09-08T20:34:59,630 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,630 directory, all directories are treated like packages. 2025-09-08T20:34:59,630 ******************************************************************************** 2025-09-08T20:34:59,630 !! 2025-09-08T20:34:59,630 check.warn(importable) 2025-09-08T20:34:59,630 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,630 !! 2025-09-08T20:34:59,631 ******************************************************************************** 2025-09-08T20:34:59,631 ############################ 2025-09-08T20:34:59,631 # Package would be ignored # 2025-09-08T20:34:59,631 ############################ 2025-09-08T20:34:59,631 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-08T20:34:59,631 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,631 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,631 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-08T20:34:59,631 to the `packages` configuration field. 2025-09-08T20:34:59,632 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,632 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,632 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,632 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-08T20:34:59,632 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-08T20:34:59,632 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,632 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,633 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,633 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,633 even if it does not contain any `.py` files. 2025-09-08T20:34:59,633 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,633 directory, all directories are treated like packages. 2025-09-08T20:34:59,634 ******************************************************************************** 2025-09-08T20:34:59,634 !! 2025-09-08T20:34:59,634 check.warn(importable) 2025-09-08T20:34:59,634 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,634 !! 2025-09-08T20:34:59,634 ******************************************************************************** 2025-09-08T20:34:59,634 ############################ 2025-09-08T20:34:59,634 # Package would be ignored # 2025-09-08T20:34:59,634 ############################ 2025-09-08T20:34:59,634 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-08T20:34:59,635 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,635 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,635 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-08T20:34:59,635 to the `packages` configuration field. 2025-09-08T20:34:59,635 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,635 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,635 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,636 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-08T20:34:59,636 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-08T20:34:59,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,636 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,636 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,636 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,636 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,637 even if it does not contain any `.py` files. 2025-09-08T20:34:59,637 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,637 directory, all directories are treated like packages. 2025-09-08T20:34:59,637 ******************************************************************************** 2025-09-08T20:34:59,637 !! 2025-09-08T20:34:59,637 check.warn(importable) 2025-09-08T20:34:59,637 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,637 !! 2025-09-08T20:34:59,638 ******************************************************************************** 2025-09-08T20:34:59,638 ############################ 2025-09-08T20:34:59,638 # Package would be ignored # 2025-09-08T20:34:59,638 ############################ 2025-09-08T20:34:59,638 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,638 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,638 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,638 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-08T20:34:59,638 to the `packages` configuration field. 2025-09-08T20:34:59,639 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,639 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,639 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,639 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,639 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,639 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,639 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-08T20:34:59,639 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,639 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,639 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,640 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,640 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,640 even if it does not contain any `.py` files. 2025-09-08T20:34:59,640 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,640 directory, all directories are treated like packages. 2025-09-08T20:34:59,640 ******************************************************************************** 2025-09-08T20:34:59,641 !! 2025-09-08T20:34:59,641 check.warn(importable) 2025-09-08T20:34:59,641 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,641 !! 2025-09-08T20:34:59,641 ******************************************************************************** 2025-09-08T20:34:59,641 ############################ 2025-09-08T20:34:59,641 # Package would be ignored # 2025-09-08T20:34:59,641 ############################ 2025-09-08T20:34:59,641 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-08T20:34:59,641 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,642 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,642 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-08T20:34:59,642 to the `packages` configuration field. 2025-09-08T20:34:59,642 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,642 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,642 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,642 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,642 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,643 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-08T20:34:59,643 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-08T20:34:59,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,643 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,643 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,643 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,643 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,643 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,644 even if it does not contain any `.py` files. 2025-09-08T20:34:59,644 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,644 directory, all directories are treated like packages. 2025-09-08T20:34:59,644 ******************************************************************************** 2025-09-08T20:34:59,644 !! 2025-09-08T20:34:59,644 check.warn(importable) 2025-09-08T20:34:59,644 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,644 !! 2025-09-08T20:34:59,644 ******************************************************************************** 2025-09-08T20:34:59,644 ############################ 2025-09-08T20:34:59,645 # Package would be ignored # 2025-09-08T20:34:59,645 ############################ 2025-09-08T20:34:59,645 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,645 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,645 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,645 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-08T20:34:59,645 to the `packages` configuration field. 2025-09-08T20:34:59,645 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,645 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,646 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,646 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,646 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-08T20:34:59,646 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-08T20:34:59,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,646 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,646 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,647 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,647 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,647 even if it does not contain any `.py` files. 2025-09-08T20:34:59,647 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,647 directory, all directories are treated like packages. 2025-09-08T20:34:59,647 ******************************************************************************** 2025-09-08T20:34:59,647 !! 2025-09-08T20:34:59,648 check.warn(importable) 2025-09-08T20:34:59,648 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,648 !! 2025-09-08T20:34:59,648 ******************************************************************************** 2025-09-08T20:34:59,648 ############################ 2025-09-08T20:34:59,648 # Package would be ignored # 2025-09-08T20:34:59,648 ############################ 2025-09-08T20:34:59,648 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,648 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,649 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,649 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,649 to the `packages` configuration field. 2025-09-08T20:34:59,649 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,649 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,649 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,649 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,650 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,650 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-08T20:34:59,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,650 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,650 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,650 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,651 even if it does not contain any `.py` files. 2025-09-08T20:34:59,651 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,651 directory, all directories are treated like packages. 2025-09-08T20:34:59,651 ******************************************************************************** 2025-09-08T20:34:59,651 !! 2025-09-08T20:34:59,651 check.warn(importable) 2025-09-08T20:34:59,651 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,651 !! 2025-09-08T20:34:59,651 ******************************************************************************** 2025-09-08T20:34:59,652 ############################ 2025-09-08T20:34:59,652 # Package would be ignored # 2025-09-08T20:34:59,652 ############################ 2025-09-08T20:34:59,652 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-08T20:34:59,652 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,652 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,652 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-08T20:34:59,652 to the `packages` configuration field. 2025-09-08T20:34:59,652 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,653 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,653 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,653 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-08T20:34:59,653 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-08T20:34:59,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,653 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,654 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,654 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,654 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,654 even if it does not contain any `.py` files. 2025-09-08T20:34:59,654 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,654 directory, all directories are treated like packages. 2025-09-08T20:34:59,654 ******************************************************************************** 2025-09-08T20:34:59,655 !! 2025-09-08T20:34:59,655 check.warn(importable) 2025-09-08T20:34:59,655 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,655 !! 2025-09-08T20:34:59,655 ******************************************************************************** 2025-09-08T20:34:59,655 ############################ 2025-09-08T20:34:59,655 # Package would be ignored # 2025-09-08T20:34:59,655 ############################ 2025-09-08T20:34:59,655 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-08T20:34:59,655 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,656 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,656 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-08T20:34:59,656 to the `packages` configuration field. 2025-09-08T20:34:59,656 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,656 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,656 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,657 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-08T20:34:59,657 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-08T20:34:59,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,657 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,657 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,658 even if it does not contain any `.py` files. 2025-09-08T20:34:59,658 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,658 directory, all directories are treated like packages. 2025-09-08T20:34:59,658 ******************************************************************************** 2025-09-08T20:34:59,658 !! 2025-09-08T20:34:59,658 check.warn(importable) 2025-09-08T20:34:59,658 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,658 !! 2025-09-08T20:34:59,658 ******************************************************************************** 2025-09-08T20:34:59,658 ############################ 2025-09-08T20:34:59,659 # Package would be ignored # 2025-09-08T20:34:59,659 ############################ 2025-09-08T20:34:59,659 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,659 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,659 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,659 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-08T20:34:59,659 to the `packages` configuration field. 2025-09-08T20:34:59,659 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,659 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,660 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,660 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,660 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,660 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,660 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-08T20:34:59,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,660 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,660 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,661 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,661 even if it does not contain any `.py` files. 2025-09-08T20:34:59,661 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,661 directory, all directories are treated like packages. 2025-09-08T20:34:59,661 ******************************************************************************** 2025-09-08T20:34:59,662 !! 2025-09-08T20:34:59,662 check.warn(importable) 2025-09-08T20:34:59,662 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,662 !! 2025-09-08T20:34:59,662 ******************************************************************************** 2025-09-08T20:34:59,662 ############################ 2025-09-08T20:34:59,662 # Package would be ignored # 2025-09-08T20:34:59,662 ############################ 2025-09-08T20:34:59,662 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-08T20:34:59,662 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,663 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,663 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-08T20:34:59,663 to the `packages` configuration field. 2025-09-08T20:34:59,663 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,663 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,663 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,663 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,664 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-08T20:34:59,664 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-08T20:34:59,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,664 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,664 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,664 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,664 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,664 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,664 even if it does not contain any `.py` files. 2025-09-08T20:34:59,665 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,665 directory, all directories are treated like packages. 2025-09-08T20:34:59,665 ******************************************************************************** 2025-09-08T20:34:59,665 !! 2025-09-08T20:34:59,665 check.warn(importable) 2025-09-08T20:34:59,665 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,665 !! 2025-09-08T20:34:59,665 ******************************************************************************** 2025-09-08T20:34:59,665 ############################ 2025-09-08T20:34:59,665 # Package would be ignored # 2025-09-08T20:34:59,666 ############################ 2025-09-08T20:34:59,666 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-08T20:34:59,666 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,666 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,666 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-08T20:34:59,666 to the `packages` configuration field. 2025-09-08T20:34:59,666 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,666 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,667 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,667 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-08T20:34:59,667 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-08T20:34:59,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,667 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,667 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,668 even if it does not contain any `.py` files. 2025-09-08T20:34:59,668 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,668 directory, all directories are treated like packages. 2025-09-08T20:34:59,668 ******************************************************************************** 2025-09-08T20:34:59,668 !! 2025-09-08T20:34:59,668 check.warn(importable) 2025-09-08T20:34:59,668 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,668 !! 2025-09-08T20:34:59,669 ******************************************************************************** 2025-09-08T20:34:59,669 ############################ 2025-09-08T20:34:59,669 # Package would be ignored # 2025-09-08T20:34:59,669 ############################ 2025-09-08T20:34:59,669 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,669 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,669 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,669 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-08T20:34:59,669 to the `packages` configuration field. 2025-09-08T20:34:59,670 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,670 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,670 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,670 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,670 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-08T20:34:59,670 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,670 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,671 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,671 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,671 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,671 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,671 even if it does not contain any `.py` files. 2025-09-08T20:34:59,671 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,671 directory, all directories are treated like packages. 2025-09-08T20:34:59,672 ******************************************************************************** 2025-09-08T20:34:59,672 !! 2025-09-08T20:34:59,672 check.warn(importable) 2025-09-08T20:34:59,672 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,672 !! 2025-09-08T20:34:59,672 ******************************************************************************** 2025-09-08T20:34:59,672 ############################ 2025-09-08T20:34:59,672 # Package would be ignored # 2025-09-08T20:34:59,672 ############################ 2025-09-08T20:34:59,673 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-08T20:34:59,673 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,673 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,673 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-08T20:34:59,673 to the `packages` configuration field. 2025-09-08T20:34:59,673 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,673 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,673 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,674 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-08T20:34:59,674 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-08T20:34:59,674 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,674 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,674 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,674 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,675 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,675 even if it does not contain any `.py` files. 2025-09-08T20:34:59,675 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,675 directory, all directories are treated like packages. 2025-09-08T20:34:59,675 ******************************************************************************** 2025-09-08T20:34:59,675 !! 2025-09-08T20:34:59,675 check.warn(importable) 2025-09-08T20:34:59,675 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,676 !! 2025-09-08T20:34:59,676 ******************************************************************************** 2025-09-08T20:34:59,676 ############################ 2025-09-08T20:34:59,676 # Package would be ignored # 2025-09-08T20:34:59,676 ############################ 2025-09-08T20:34:59,676 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,676 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,676 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,676 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-08T20:34:59,676 to the `packages` configuration field. 2025-09-08T20:34:59,677 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,677 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,677 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,677 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-08T20:34:59,677 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-08T20:34:59,677 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,677 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,678 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,678 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,678 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,678 even if it does not contain any `.py` files. 2025-09-08T20:34:59,678 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,678 directory, all directories are treated like packages. 2025-09-08T20:34:59,678 ******************************************************************************** 2025-09-08T20:34:59,679 !! 2025-09-08T20:34:59,679 check.warn(importable) 2025-09-08T20:34:59,679 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,679 !! 2025-09-08T20:34:59,679 ******************************************************************************** 2025-09-08T20:34:59,679 ############################ 2025-09-08T20:34:59,679 # Package would be ignored # 2025-09-08T20:34:59,679 ############################ 2025-09-08T20:34:59,679 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,679 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,680 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,680 to the `packages` configuration field. 2025-09-08T20:34:59,680 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,680 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,680 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,681 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,681 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-08T20:34:59,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,681 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,681 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,681 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,682 even if it does not contain any `.py` files. 2025-09-08T20:34:59,682 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,682 directory, all directories are treated like packages. 2025-09-08T20:34:59,682 ******************************************************************************** 2025-09-08T20:34:59,682 !! 2025-09-08T20:34:59,682 check.warn(importable) 2025-09-08T20:34:59,682 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,682 !! 2025-09-08T20:34:59,682 ******************************************************************************** 2025-09-08T20:34:59,683 ############################ 2025-09-08T20:34:59,683 # Package would be ignored # 2025-09-08T20:34:59,683 ############################ 2025-09-08T20:34:59,683 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-08T20:34:59,683 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,683 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,683 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-08T20:34:59,683 to the `packages` configuration field. 2025-09-08T20:34:59,683 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,684 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,684 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,684 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,684 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-08T20:34:59,684 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-08T20:34:59,684 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,684 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,684 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,685 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,685 even if it does not contain any `.py` files. 2025-09-08T20:34:59,685 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,685 directory, all directories are treated like packages. 2025-09-08T20:34:59,685 ******************************************************************************** 2025-09-08T20:34:59,686 !! 2025-09-08T20:34:59,686 check.warn(importable) 2025-09-08T20:34:59,686 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,686 !! 2025-09-08T20:34:59,686 ******************************************************************************** 2025-09-08T20:34:59,686 ############################ 2025-09-08T20:34:59,686 # Package would be ignored # 2025-09-08T20:34:59,686 ############################ 2025-09-08T20:34:59,686 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-08T20:34:59,686 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,687 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,687 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-08T20:34:59,687 to the `packages` configuration field. 2025-09-08T20:34:59,687 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,687 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,687 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,688 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-08T20:34:59,688 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-08T20:34:59,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,688 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,688 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,689 even if it does not contain any `.py` files. 2025-09-08T20:34:59,689 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,689 directory, all directories are treated like packages. 2025-09-08T20:34:59,689 ******************************************************************************** 2025-09-08T20:34:59,689 !! 2025-09-08T20:34:59,689 check.warn(importable) 2025-09-08T20:34:59,689 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,689 !! 2025-09-08T20:34:59,689 ******************************************************************************** 2025-09-08T20:34:59,690 ############################ 2025-09-08T20:34:59,690 # Package would be ignored # 2025-09-08T20:34:59,690 ############################ 2025-09-08T20:34:59,690 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,690 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,690 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,690 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-08T20:34:59,690 to the `packages` configuration field. 2025-09-08T20:34:59,690 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,690 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,691 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,691 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,691 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,691 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-08T20:34:59,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,691 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,691 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,692 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,692 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,692 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,692 even if it does not contain any `.py` files. 2025-09-08T20:34:59,692 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,692 directory, all directories are treated like packages. 2025-09-08T20:34:59,692 ******************************************************************************** 2025-09-08T20:34:59,692 !! 2025-09-08T20:34:59,693 check.warn(importable) 2025-09-08T20:34:59,693 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-08T20:34:59,693 !! 2025-09-08T20:34:59,693 ******************************************************************************** 2025-09-08T20:34:59,693 ############################ 2025-09-08T20:34:59,693 # Package would be ignored # 2025-09-08T20:34:59,693 ############################ 2025-09-08T20:34:59,693 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-08T20:34:59,693 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,693 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,694 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-08T20:34:59,694 to the `packages` configuration field. 2025-09-08T20:34:59,694 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,694 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,694 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,694 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,694 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-08T20:34:59,694 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-08T20:34:59,695 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,695 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,695 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,695 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,695 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,695 even if it does not contain any `.py` files. 2025-09-08T20:34:59,695 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,696 directory, all directories are treated like packages. 2025-09-08T20:34:59,696 ******************************************************************************** 2025-09-08T20:34:59,696 !! 2025-09-08T20:34:59,696 check.warn(importable) 2025-09-08T20:34:59,696 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,696 !! 2025-09-08T20:34:59,696 ******************************************************************************** 2025-09-08T20:34:59,696 ############################ 2025-09-08T20:34:59,696 # Package would be ignored # 2025-09-08T20:34:59,697 ############################ 2025-09-08T20:34:59,697 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-08T20:34:59,697 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,697 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,697 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-08T20:34:59,697 to the `packages` configuration field. 2025-09-08T20:34:59,697 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,697 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,698 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,698 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-08T20:34:59,698 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-08T20:34:59,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,698 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,698 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,699 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,699 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,699 even if it does not contain any `.py` files. 2025-09-08T20:34:59,699 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,699 directory, all directories are treated like packages. 2025-09-08T20:34:59,699 ******************************************************************************** 2025-09-08T20:34:59,699 !! 2025-09-08T20:34:59,699 check.warn(importable) 2025-09-08T20:34:59,700 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-08T20:34:59,700 !! 2025-09-08T20:34:59,700 ******************************************************************************** 2025-09-08T20:34:59,700 ############################ 2025-09-08T20:34:59,700 # Package would be ignored # 2025-09-08T20:34:59,700 ############################ 2025-09-08T20:34:59,700 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-08T20:34:59,700 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,700 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,700 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-08T20:34:59,701 to the `packages` configuration field. 2025-09-08T20:34:59,701 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,701 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,701 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,701 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-08T20:34:59,701 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-08T20:34:59,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,702 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,702 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,702 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,702 even if it does not contain any `.py` files. 2025-09-08T20:34:59,702 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,703 directory, all directories are treated like packages. 2025-09-08T20:34:59,703 ******************************************************************************** 2025-09-08T20:34:59,703 !! 2025-09-08T20:34:59,703 check.warn(importable) 2025-09-08T20:34:59,703 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,703 !! 2025-09-08T20:34:59,703 ******************************************************************************** 2025-09-08T20:34:59,703 ############################ 2025-09-08T20:34:59,703 # Package would be ignored # 2025-09-08T20:34:59,703 ############################ 2025-09-08T20:34:59,704 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-08T20:34:59,704 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,704 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,704 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-08T20:34:59,704 to the `packages` configuration field. 2025-09-08T20:34:59,704 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,704 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,704 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,705 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-08T20:34:59,705 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-08T20:34:59,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,705 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,705 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,706 even if it does not contain any `.py` files. 2025-09-08T20:34:59,706 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,706 directory, all directories are treated like packages. 2025-09-08T20:34:59,706 ******************************************************************************** 2025-09-08T20:34:59,706 !! 2025-09-08T20:34:59,706 check.warn(importable) 2025-09-08T20:34:59,706 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,706 !! 2025-09-08T20:34:59,707 ******************************************************************************** 2025-09-08T20:34:59,707 ############################ 2025-09-08T20:34:59,707 # Package would be ignored # 2025-09-08T20:34:59,707 ############################ 2025-09-08T20:34:59,707 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-08T20:34:59,707 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,707 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,707 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-08T20:34:59,707 to the `packages` configuration field. 2025-09-08T20:34:59,708 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,708 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,708 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,708 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-08T20:34:59,708 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-08T20:34:59,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,709 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,709 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,709 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,709 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,709 even if it does not contain any `.py` files. 2025-09-08T20:34:59,709 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,709 directory, all directories are treated like packages. 2025-09-08T20:34:59,710 ******************************************************************************** 2025-09-08T20:34:59,710 !! 2025-09-08T20:34:59,710 check.warn(importable) 2025-09-08T20:34:59,710 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,710 !! 2025-09-08T20:34:59,710 ******************************************************************************** 2025-09-08T20:34:59,710 ############################ 2025-09-08T20:34:59,710 # Package would be ignored # 2025-09-08T20:34:59,710 ############################ 2025-09-08T20:34:59,710 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,711 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,711 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-08T20:34:59,711 to the `packages` configuration field. 2025-09-08T20:34:59,711 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,711 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,711 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,712 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-08T20:34:59,712 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-08T20:34:59,712 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,712 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,712 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,713 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,713 even if it does not contain any `.py` files. 2025-09-08T20:34:59,713 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,713 directory, all directories are treated like packages. 2025-09-08T20:34:59,713 ******************************************************************************** 2025-09-08T20:34:59,713 !! 2025-09-08T20:34:59,713 check.warn(importable) 2025-09-08T20:34:59,713 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-08T20:34:59,713 !! 2025-09-08T20:34:59,714 ******************************************************************************** 2025-09-08T20:34:59,714 ############################ 2025-09-08T20:34:59,714 # Package would be ignored # 2025-09-08T20:34:59,714 ############################ 2025-09-08T20:34:59,714 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-08T20:34:59,714 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,714 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,714 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-08T20:34:59,714 to the `packages` configuration field. 2025-09-08T20:34:59,715 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,715 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,715 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,715 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-08T20:34:59,715 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-08T20:34:59,715 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,716 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,716 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,716 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,716 even if it does not contain any `.py` files. 2025-09-08T20:34:59,716 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,716 directory, all directories are treated like packages. 2025-09-08T20:34:59,717 ******************************************************************************** 2025-09-08T20:34:59,717 !! 2025-09-08T20:34:59,717 check.warn(importable) 2025-09-08T20:34:59,717 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,717 !! 2025-09-08T20:34:59,717 ******************************************************************************** 2025-09-08T20:34:59,717 ############################ 2025-09-08T20:34:59,717 # Package would be ignored # 2025-09-08T20:34:59,717 ############################ 2025-09-08T20:34:59,717 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-08T20:34:59,718 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,718 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-08T20:34:59,718 to the `packages` configuration field. 2025-09-08T20:34:59,718 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,718 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,718 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,719 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,719 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-08T20:34:59,719 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-08T20:34:59,719 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,719 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,719 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,719 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,720 even if it does not contain any `.py` files. 2025-09-08T20:34:59,720 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,720 directory, all directories are treated like packages. 2025-09-08T20:34:59,720 ******************************************************************************** 2025-09-08T20:34:59,720 !! 2025-09-08T20:34:59,720 check.warn(importable) 2025-09-08T20:34:59,720 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-08T20:34:59,720 !! 2025-09-08T20:34:59,721 ******************************************************************************** 2025-09-08T20:34:59,721 ############################ 2025-09-08T20:34:59,721 # Package would be ignored # 2025-09-08T20:34:59,721 ############################ 2025-09-08T20:34:59,721 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-08T20:34:59,721 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,721 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,721 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-08T20:34:59,721 to the `packages` configuration field. 2025-09-08T20:34:59,722 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,722 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,722 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,722 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-08T20:34:59,722 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-08T20:34:59,722 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,723 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,723 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,723 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,723 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,723 even if it does not contain any `.py` files. 2025-09-08T20:34:59,723 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,724 directory, all directories are treated like packages. 2025-09-08T20:34:59,724 ******************************************************************************** 2025-09-08T20:34:59,724 !! 2025-09-08T20:34:59,724 check.warn(importable) 2025-09-08T20:34:59,724 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,724 !! 2025-09-08T20:34:59,724 ******************************************************************************** 2025-09-08T20:34:59,724 ############################ 2025-09-08T20:34:59,724 # Package would be ignored # 2025-09-08T20:34:59,724 ############################ 2025-09-08T20:34:59,725 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-08T20:34:59,725 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,725 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,725 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-08T20:34:59,725 to the `packages` configuration field. 2025-09-08T20:34:59,725 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,725 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,725 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,726 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-08T20:34:59,726 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-08T20:34:59,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,726 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,726 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,727 even if it does not contain any `.py` files. 2025-09-08T20:34:59,727 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,727 directory, all directories are treated like packages. 2025-09-08T20:34:59,727 ******************************************************************************** 2025-09-08T20:34:59,727 !! 2025-09-08T20:34:59,727 check.warn(importable) 2025-09-08T20:34:59,727 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,727 !! 2025-09-08T20:34:59,728 ******************************************************************************** 2025-09-08T20:34:59,728 ############################ 2025-09-08T20:34:59,728 # Package would be ignored # 2025-09-08T20:34:59,728 ############################ 2025-09-08T20:34:59,728 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,728 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,728 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,728 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-08T20:34:59,728 to the `packages` configuration field. 2025-09-08T20:34:59,729 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,729 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,729 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,729 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-08T20:34:59,729 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-08T20:34:59,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,730 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,730 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,730 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,730 even if it does not contain any `.py` files. 2025-09-08T20:34:59,730 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,730 directory, all directories are treated like packages. 2025-09-08T20:34:59,730 ******************************************************************************** 2025-09-08T20:34:59,731 !! 2025-09-08T20:34:59,731 check.warn(importable) 2025-09-08T20:34:59,731 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,731 !! 2025-09-08T20:34:59,731 ******************************************************************************** 2025-09-08T20:34:59,731 ############################ 2025-09-08T20:34:59,731 # Package would be ignored # 2025-09-08T20:34:59,731 ############################ 2025-09-08T20:34:59,731 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-08T20:34:59,731 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,732 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,732 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-08T20:34:59,732 to the `packages` configuration field. 2025-09-08T20:34:59,732 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,732 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,732 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,732 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,732 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,733 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-08T20:34:59,733 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-08T20:34:59,733 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,733 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,733 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,733 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,734 even if it does not contain any `.py` files. 2025-09-08T20:34:59,734 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,734 directory, all directories are treated like packages. 2025-09-08T20:34:59,734 ******************************************************************************** 2025-09-08T20:34:59,734 !! 2025-09-08T20:34:59,734 check.warn(importable) 2025-09-08T20:34:59,734 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,734 !! 2025-09-08T20:34:59,735 ******************************************************************************** 2025-09-08T20:34:59,735 ############################ 2025-09-08T20:34:59,735 # Package would be ignored # 2025-09-08T20:34:59,735 ############################ 2025-09-08T20:34:59,735 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-08T20:34:59,735 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,735 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,735 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-08T20:34:59,735 to the `packages` configuration field. 2025-09-08T20:34:59,735 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,736 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,736 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,736 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,736 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-08T20:34:59,736 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-08T20:34:59,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,736 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,737 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,737 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,737 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,737 even if it does not contain any `.py` files. 2025-09-08T20:34:59,737 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,737 directory, all directories are treated like packages. 2025-09-08T20:34:59,737 ******************************************************************************** 2025-09-08T20:34:59,738 !! 2025-09-08T20:34:59,738 check.warn(importable) 2025-09-08T20:34:59,738 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,738 !! 2025-09-08T20:34:59,738 ******************************************************************************** 2025-09-08T20:34:59,738 ############################ 2025-09-08T20:34:59,738 # Package would be ignored # 2025-09-08T20:34:59,738 ############################ 2025-09-08T20:34:59,738 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,738 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,739 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,739 to the `packages` configuration field. 2025-09-08T20:34:59,739 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,739 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,739 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,739 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,739 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,740 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,740 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-08T20:34:59,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,740 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,740 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,740 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,740 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,741 even if it does not contain any `.py` files. 2025-09-08T20:34:59,741 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,741 directory, all directories are treated like packages. 2025-09-08T20:34:59,741 ******************************************************************************** 2025-09-08T20:34:59,741 !! 2025-09-08T20:34:59,741 check.warn(importable) 2025-09-08T20:34:59,741 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-08T20:34:59,741 !! 2025-09-08T20:34:59,741 ******************************************************************************** 2025-09-08T20:34:59,741 ############################ 2025-09-08T20:34:59,742 # Package would be ignored # 2025-09-08T20:34:59,742 ############################ 2025-09-08T20:34:59,742 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-08T20:34:59,742 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,742 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,742 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-08T20:34:59,742 to the `packages` configuration field. 2025-09-08T20:34:59,742 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,742 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,743 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,743 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-08T20:34:59,743 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-08T20:34:59,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,743 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,743 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,743 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,744 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,744 even if it does not contain any `.py` files. 2025-09-08T20:34:59,744 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,744 directory, all directories are treated like packages. 2025-09-08T20:34:59,744 ******************************************************************************** 2025-09-08T20:34:59,744 !! 2025-09-08T20:34:59,744 check.warn(importable) 2025-09-08T20:34:59,745 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,745 !! 2025-09-08T20:34:59,745 ******************************************************************************** 2025-09-08T20:34:59,745 ############################ 2025-09-08T20:34:59,745 # Package would be ignored # 2025-09-08T20:34:59,745 ############################ 2025-09-08T20:34:59,745 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-08T20:34:59,745 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,745 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,745 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-08T20:34:59,745 to the `packages` configuration field. 2025-09-08T20:34:59,746 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,746 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,746 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,746 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-08T20:34:59,746 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-08T20:34:59,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,747 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,747 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,747 even if it does not contain any `.py` files. 2025-09-08T20:34:59,748 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,748 directory, all directories are treated like packages. 2025-09-08T20:34:59,748 ******************************************************************************** 2025-09-08T20:34:59,748 !! 2025-09-08T20:34:59,748 check.warn(importable) 2025-09-08T20:34:59,748 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,748 !! 2025-09-08T20:34:59,748 ******************************************************************************** 2025-09-08T20:34:59,748 ############################ 2025-09-08T20:34:59,748 # Package would be ignored # 2025-09-08T20:34:59,749 ############################ 2025-09-08T20:34:59,749 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,749 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,749 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,749 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-08T20:34:59,749 to the `packages` configuration field. 2025-09-08T20:34:59,749 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,749 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,750 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,750 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-08T20:34:59,750 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-08T20:34:59,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,750 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,750 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,750 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,751 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,751 even if it does not contain any `.py` files. 2025-09-08T20:34:59,751 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,751 directory, all directories are treated like packages. 2025-09-08T20:34:59,751 ******************************************************************************** 2025-09-08T20:34:59,751 !! 2025-09-08T20:34:59,751 check.warn(importable) 2025-09-08T20:34:59,751 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,752 !! 2025-09-08T20:34:59,752 ******************************************************************************** 2025-09-08T20:34:59,752 ############################ 2025-09-08T20:34:59,752 # Package would be ignored # 2025-09-08T20:34:59,752 ############################ 2025-09-08T20:34:59,752 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-08T20:34:59,752 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,752 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,752 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-08T20:34:59,752 to the `packages` configuration field. 2025-09-08T20:34:59,753 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,753 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,753 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,753 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-08T20:34:59,753 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-08T20:34:59,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,754 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,754 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,754 even if it does not contain any `.py` files. 2025-09-08T20:34:59,754 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,754 directory, all directories are treated like packages. 2025-09-08T20:34:59,754 ******************************************************************************** 2025-09-08T20:34:59,755 !! 2025-09-08T20:34:59,755 check.warn(importable) 2025-09-08T20:34:59,755 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-08T20:34:59,755 !! 2025-09-08T20:34:59,755 ******************************************************************************** 2025-09-08T20:34:59,755 ############################ 2025-09-08T20:34:59,755 # Package would be ignored # 2025-09-08T20:34:59,755 ############################ 2025-09-08T20:34:59,755 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-08T20:34:59,755 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,756 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-08T20:34:59,756 to the `packages` configuration field. 2025-09-08T20:34:59,756 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,756 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,756 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,756 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,757 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-08T20:34:59,757 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-08T20:34:59,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,757 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,757 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,758 even if it does not contain any `.py` files. 2025-09-08T20:34:59,758 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,758 directory, all directories are treated like packages. 2025-09-08T20:34:59,758 ******************************************************************************** 2025-09-08T20:34:59,758 !! 2025-09-08T20:34:59,758 check.warn(importable) 2025-09-08T20:34:59,758 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-08T20:34:59,758 !! 2025-09-08T20:34:59,758 ******************************************************************************** 2025-09-08T20:34:59,759 ############################ 2025-09-08T20:34:59,759 # Package would be ignored # 2025-09-08T20:34:59,759 ############################ 2025-09-08T20:34:59,759 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-08T20:34:59,759 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,759 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,759 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-08T20:34:59,759 to the `packages` configuration field. 2025-09-08T20:34:59,759 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,760 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,760 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,760 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-08T20:34:59,760 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-08T20:34:59,760 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,760 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,761 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,761 even if it does not contain any `.py` files. 2025-09-08T20:34:59,761 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,761 directory, all directories are treated like packages. 2025-09-08T20:34:59,761 ******************************************************************************** 2025-09-08T20:34:59,762 !! 2025-09-08T20:34:59,762 check.warn(importable) 2025-09-08T20:34:59,762 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-08T20:34:59,762 !! 2025-09-08T20:34:59,762 ******************************************************************************** 2025-09-08T20:34:59,762 ############################ 2025-09-08T20:34:59,762 # Package would be ignored # 2025-09-08T20:34:59,762 ############################ 2025-09-08T20:34:59,762 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-08T20:34:59,762 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,763 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,763 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-08T20:34:59,763 to the `packages` configuration field. 2025-09-08T20:34:59,763 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,763 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,763 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,763 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,763 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,764 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-08T20:34:59,764 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-08T20:34:59,764 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,764 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,764 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,764 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,765 even if it does not contain any `.py` files. 2025-09-08T20:34:59,765 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,765 directory, all directories are treated like packages. 2025-09-08T20:34:59,765 ******************************************************************************** 2025-09-08T20:34:59,765 !! 2025-09-08T20:34:59,765 check.warn(importable) 2025-09-08T20:34:59,765 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,765 !! 2025-09-08T20:34:59,765 ******************************************************************************** 2025-09-08T20:34:59,765 ############################ 2025-09-08T20:34:59,766 # Package would be ignored # 2025-09-08T20:34:59,766 ############################ 2025-09-08T20:34:59,766 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,766 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,766 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,766 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-08T20:34:59,766 to the `packages` configuration field. 2025-09-08T20:34:59,766 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,766 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,766 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,767 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,767 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-08T20:34:59,767 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-08T20:34:59,767 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,767 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,767 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,767 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,768 even if it does not contain any `.py` files. 2025-09-08T20:34:59,768 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,768 directory, all directories are treated like packages. 2025-09-08T20:34:59,768 ******************************************************************************** 2025-09-08T20:34:59,768 !! 2025-09-08T20:34:59,768 check.warn(importable) 2025-09-08T20:34:59,768 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-08T20:34:59,769 !! 2025-09-08T20:34:59,769 ******************************************************************************** 2025-09-08T20:34:59,769 ############################ 2025-09-08T20:34:59,769 # Package would be ignored # 2025-09-08T20:34:59,769 ############################ 2025-09-08T20:34:59,769 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-08T20:34:59,769 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,769 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,769 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-08T20:34:59,769 to the `packages` configuration field. 2025-09-08T20:34:59,770 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,770 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,770 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,770 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,770 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-08T20:34:59,770 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-08T20:34:59,770 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,771 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,771 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,771 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,771 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,771 even if it does not contain any `.py` files. 2025-09-08T20:34:59,771 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,771 directory, all directories are treated like packages. 2025-09-08T20:34:59,771 ******************************************************************************** 2025-09-08T20:34:59,772 !! 2025-09-08T20:34:59,772 check.warn(importable) 2025-09-08T20:34:59,772 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-08T20:34:59,772 !! 2025-09-08T20:34:59,772 ******************************************************************************** 2025-09-08T20:34:59,772 ############################ 2025-09-08T20:34:59,772 # Package would be ignored # 2025-09-08T20:34:59,772 ############################ 2025-09-08T20:34:59,772 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-08T20:34:59,773 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,773 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,773 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-08T20:34:59,773 to the `packages` configuration field. 2025-09-08T20:34:59,773 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,773 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,773 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,773 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,774 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,774 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-08T20:34:59,774 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-08T20:34:59,774 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,774 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,774 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,775 even if it does not contain any `.py` files. 2025-09-08T20:34:59,775 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,775 directory, all directories are treated like packages. 2025-09-08T20:34:59,775 ******************************************************************************** 2025-09-08T20:34:59,775 !! 2025-09-08T20:34:59,775 check.warn(importable) 2025-09-08T20:34:59,775 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-08T20:34:59,775 !! 2025-09-08T20:34:59,776 ******************************************************************************** 2025-09-08T20:34:59,776 ############################ 2025-09-08T20:34:59,776 # Package would be ignored # 2025-09-08T20:34:59,776 ############################ 2025-09-08T20:34:59,776 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-08T20:34:59,776 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,776 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,776 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-08T20:34:59,776 to the `packages` configuration field. 2025-09-08T20:34:59,777 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,777 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,777 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,777 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,777 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-08T20:34:59,777 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-08T20:34:59,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,777 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,778 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,778 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,778 even if it does not contain any `.py` files. 2025-09-08T20:34:59,778 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,778 directory, all directories are treated like packages. 2025-09-08T20:34:59,778 ******************************************************************************** 2025-09-08T20:34:59,779 !! 2025-09-08T20:34:59,779 check.warn(importable) 2025-09-08T20:34:59,779 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-08T20:34:59,779 !! 2025-09-08T20:34:59,779 ******************************************************************************** 2025-09-08T20:34:59,779 ############################ 2025-09-08T20:34:59,779 # Package would be ignored # 2025-09-08T20:34:59,779 ############################ 2025-09-08T20:34:59,779 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-08T20:34:59,779 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,780 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,780 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-08T20:34:59,780 to the `packages` configuration field. 2025-09-08T20:34:59,780 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,780 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,780 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,781 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-08T20:34:59,781 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-08T20:34:59,781 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,781 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,781 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,781 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,781 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,782 even if it does not contain any `.py` files. 2025-09-08T20:34:59,782 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,782 directory, all directories are treated like packages. 2025-09-08T20:34:59,782 ******************************************************************************** 2025-09-08T20:34:59,782 !! 2025-09-08T20:34:59,782 check.warn(importable) 2025-09-08T20:34:59,782 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-08T20:34:59,782 !! 2025-09-08T20:34:59,782 ******************************************************************************** 2025-09-08T20:34:59,782 ############################ 2025-09-08T20:34:59,783 # Package would be ignored # 2025-09-08T20:34:59,783 ############################ 2025-09-08T20:34:59,783 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-08T20:34:59,783 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,783 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,783 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-08T20:34:59,783 to the `packages` configuration field. 2025-09-08T20:34:59,783 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,783 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,783 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,784 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,784 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,784 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-08T20:34:59,784 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-08T20:34:59,784 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,784 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,785 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,785 even if it does not contain any `.py` files. 2025-09-08T20:34:59,785 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,785 directory, all directories are treated like packages. 2025-09-08T20:34:59,785 ******************************************************************************** 2025-09-08T20:34:59,786 !! 2025-09-08T20:34:59,786 check.warn(importable) 2025-09-08T20:34:59,786 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-08T20:34:59,786 !! 2025-09-08T20:34:59,786 ******************************************************************************** 2025-09-08T20:34:59,786 ############################ 2025-09-08T20:34:59,786 # Package would be ignored # 2025-09-08T20:34:59,786 ############################ 2025-09-08T20:34:59,786 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-08T20:34:59,786 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,787 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-08T20:34:59,787 to the `packages` configuration field. 2025-09-08T20:34:59,787 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,787 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,787 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,788 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-08T20:34:59,788 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-08T20:34:59,788 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,788 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,788 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,788 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,789 even if it does not contain any `.py` files. 2025-09-08T20:34:59,789 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,789 directory, all directories are treated like packages. 2025-09-08T20:34:59,789 ******************************************************************************** 2025-09-08T20:34:59,789 !! 2025-09-08T20:34:59,789 check.warn(importable) 2025-09-08T20:34:59,789 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-08T20:34:59,790 !! 2025-09-08T20:34:59,790 ******************************************************************************** 2025-09-08T20:34:59,790 ############################ 2025-09-08T20:34:59,790 # Package would be ignored # 2025-09-08T20:34:59,790 ############################ 2025-09-08T20:34:59,790 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-08T20:34:59,790 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,790 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,790 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-08T20:34:59,790 to the `packages` configuration field. 2025-09-08T20:34:59,791 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,791 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,791 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,791 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-08T20:34:59,791 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-08T20:34:59,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,792 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,792 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,792 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,792 even if it does not contain any `.py` files. 2025-09-08T20:34:59,793 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,793 directory, all directories are treated like packages. 2025-09-08T20:34:59,793 ******************************************************************************** 2025-09-08T20:34:59,793 !! 2025-09-08T20:34:59,793 check.warn(importable) 2025-09-08T20:34:59,793 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,793 !! 2025-09-08T20:34:59,793 ******************************************************************************** 2025-09-08T20:34:59,793 ############################ 2025-09-08T20:34:59,794 # Package would be ignored # 2025-09-08T20:34:59,794 ############################ 2025-09-08T20:34:59,794 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,794 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,794 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,794 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-08T20:34:59,794 to the `packages` configuration field. 2025-09-08T20:34:59,794 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,794 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,795 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,795 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-08T20:34:59,795 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-08T20:34:59,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,795 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,795 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,795 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,796 even if it does not contain any `.py` files. 2025-09-08T20:34:59,796 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,796 directory, all directories are treated like packages. 2025-09-08T20:34:59,796 ******************************************************************************** 2025-09-08T20:34:59,796 !! 2025-09-08T20:34:59,796 check.warn(importable) 2025-09-08T20:34:59,797 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-08T20:34:59,797 !! 2025-09-08T20:34:59,797 ******************************************************************************** 2025-09-08T20:34:59,797 ############################ 2025-09-08T20:34:59,797 # Package would be ignored # 2025-09-08T20:34:59,797 ############################ 2025-09-08T20:34:59,797 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-08T20:34:59,797 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,797 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,797 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-08T20:34:59,798 to the `packages` configuration field. 2025-09-08T20:34:59,798 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,798 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,798 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,798 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-08T20:34:59,799 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-08T20:34:59,799 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,799 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,799 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,799 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,799 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,799 even if it does not contain any `.py` files. 2025-09-08T20:34:59,800 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,800 directory, all directories are treated like packages. 2025-09-08T20:34:59,800 ******************************************************************************** 2025-09-08T20:34:59,800 !! 2025-09-08T20:34:59,800 check.warn(importable) 2025-09-08T20:34:59,800 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-08T20:34:59,800 !! 2025-09-08T20:34:59,800 ******************************************************************************** 2025-09-08T20:34:59,800 ############################ 2025-09-08T20:34:59,800 # Package would be ignored # 2025-09-08T20:34:59,801 ############################ 2025-09-08T20:34:59,801 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-08T20:34:59,801 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,801 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,801 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-08T20:34:59,801 to the `packages` configuration field. 2025-09-08T20:34:59,801 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,801 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,802 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,802 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-08T20:34:59,802 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-08T20:34:59,802 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,802 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,802 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,802 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,803 even if it does not contain any `.py` files. 2025-09-08T20:34:59,803 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,803 directory, all directories are treated like packages. 2025-09-08T20:34:59,803 ******************************************************************************** 2025-09-08T20:34:59,803 !! 2025-09-08T20:34:59,803 check.warn(importable) 2025-09-08T20:34:59,804 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-08T20:34:59,804 !! 2025-09-08T20:34:59,804 ******************************************************************************** 2025-09-08T20:34:59,804 ############################ 2025-09-08T20:34:59,804 # Package would be ignored # 2025-09-08T20:34:59,804 ############################ 2025-09-08T20:34:59,804 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-08T20:34:59,804 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,804 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,804 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-08T20:34:59,805 to the `packages` configuration field. 2025-09-08T20:34:59,805 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,805 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,805 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,805 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,805 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-08T20:34:59,805 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-08T20:34:59,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,806 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,806 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,806 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,806 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,806 even if it does not contain any `.py` files. 2025-09-08T20:34:59,806 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,807 directory, all directories are treated like packages. 2025-09-08T20:34:59,807 ******************************************************************************** 2025-09-08T20:34:59,807 !! 2025-09-08T20:34:59,807 check.warn(importable) 2025-09-08T20:34:59,807 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,807 !! 2025-09-08T20:34:59,807 ******************************************************************************** 2025-09-08T20:34:59,807 ############################ 2025-09-08T20:34:59,807 # Package would be ignored # 2025-09-08T20:34:59,808 ############################ 2025-09-08T20:34:59,808 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-08T20:34:59,808 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,808 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,808 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-08T20:34:59,808 to the `packages` configuration field. 2025-09-08T20:34:59,808 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,808 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,808 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,809 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,809 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,809 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-08T20:34:59,809 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-08T20:34:59,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,809 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,809 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,809 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,810 even if it does not contain any `.py` files. 2025-09-08T20:34:59,810 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,810 directory, all directories are treated like packages. 2025-09-08T20:34:59,810 ******************************************************************************** 2025-09-08T20:34:59,810 !! 2025-09-08T20:34:59,810 check.warn(importable) 2025-09-08T20:34:59,810 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-08T20:34:59,811 !! 2025-09-08T20:34:59,811 ******************************************************************************** 2025-09-08T20:34:59,811 ############################ 2025-09-08T20:34:59,811 # Package would be ignored # 2025-09-08T20:34:59,811 ############################ 2025-09-08T20:34:59,811 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-08T20:34:59,811 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,811 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,811 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-08T20:34:59,812 to the `packages` configuration field. 2025-09-08T20:34:59,812 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,812 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,812 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,812 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,812 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-08T20:34:59,813 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-08T20:34:59,813 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,813 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,813 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,813 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,813 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,813 even if it does not contain any `.py` files. 2025-09-08T20:34:59,814 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,814 directory, all directories are treated like packages. 2025-09-08T20:34:59,814 ******************************************************************************** 2025-09-08T20:34:59,814 !! 2025-09-08T20:34:59,814 check.warn(importable) 2025-09-08T20:34:59,814 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,814 !! 2025-09-08T20:34:59,814 ******************************************************************************** 2025-09-08T20:34:59,814 ############################ 2025-09-08T20:34:59,814 # Package would be ignored # 2025-09-08T20:34:59,815 ############################ 2025-09-08T20:34:59,815 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-08T20:34:59,815 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,815 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,815 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-08T20:34:59,815 to the `packages` configuration field. 2025-09-08T20:34:59,815 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,815 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,816 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,816 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-08T20:34:59,816 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-08T20:34:59,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,816 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,816 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,816 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,817 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,817 even if it does not contain any `.py` files. 2025-09-08T20:34:59,817 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,817 directory, all directories are treated like packages. 2025-09-08T20:34:59,817 ******************************************************************************** 2025-09-08T20:34:59,817 !! 2025-09-08T20:34:59,817 check.warn(importable) 2025-09-08T20:34:59,817 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,818 !! 2025-09-08T20:34:59,818 ******************************************************************************** 2025-09-08T20:34:59,818 ############################ 2025-09-08T20:34:59,818 # Package would be ignored # 2025-09-08T20:34:59,818 ############################ 2025-09-08T20:34:59,818 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-08T20:34:59,818 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,818 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,818 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-08T20:34:59,818 to the `packages` configuration field. 2025-09-08T20:34:59,819 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,819 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,819 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,819 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,819 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-08T20:34:59,819 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-08T20:34:59,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,820 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,820 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,820 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,820 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,820 even if it does not contain any `.py` files. 2025-09-08T20:34:59,820 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,820 directory, all directories are treated like packages. 2025-09-08T20:34:59,821 ******************************************************************************** 2025-09-08T20:34:59,821 !! 2025-09-08T20:34:59,821 check.warn(importable) 2025-09-08T20:34:59,821 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,821 !! 2025-09-08T20:34:59,821 ******************************************************************************** 2025-09-08T20:34:59,821 ############################ 2025-09-08T20:34:59,821 # Package would be ignored # 2025-09-08T20:34:59,821 ############################ 2025-09-08T20:34:59,821 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-08T20:34:59,822 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,822 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,822 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-08T20:34:59,822 to the `packages` configuration field. 2025-09-08T20:34:59,822 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,822 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,822 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,823 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,823 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-08T20:34:59,823 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-08T20:34:59,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,823 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,823 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,824 even if it does not contain any `.py` files. 2025-09-08T20:34:59,824 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,824 directory, all directories are treated like packages. 2025-09-08T20:34:59,824 ******************************************************************************** 2025-09-08T20:34:59,824 !! 2025-09-08T20:34:59,824 check.warn(importable) 2025-09-08T20:34:59,825 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,825 !! 2025-09-08T20:34:59,825 ******************************************************************************** 2025-09-08T20:34:59,825 ############################ 2025-09-08T20:34:59,825 # Package would be ignored # 2025-09-08T20:34:59,825 ############################ 2025-09-08T20:34:59,825 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-08T20:34:59,825 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,825 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,825 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-08T20:34:59,826 to the `packages` configuration field. 2025-09-08T20:34:59,826 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,826 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,826 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,826 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,826 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,826 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-08T20:34:59,827 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-08T20:34:59,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,827 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,827 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,827 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,827 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,828 even if it does not contain any `.py` files. 2025-09-08T20:34:59,828 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,828 directory, all directories are treated like packages. 2025-09-08T20:34:59,828 ******************************************************************************** 2025-09-08T20:34:59,828 !! 2025-09-08T20:34:59,828 check.warn(importable) 2025-09-08T20:34:59,828 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,828 !! 2025-09-08T20:34:59,828 ******************************************************************************** 2025-09-08T20:34:59,829 ############################ 2025-09-08T20:34:59,829 # Package would be ignored # 2025-09-08T20:34:59,829 ############################ 2025-09-08T20:34:59,829 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-08T20:34:59,829 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,829 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,829 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-08T20:34:59,829 to the `packages` configuration field. 2025-09-08T20:34:59,829 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,829 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,830 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,830 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,830 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-08T20:34:59,830 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-08T20:34:59,830 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,830 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,830 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,831 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,831 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,831 even if it does not contain any `.py` files. 2025-09-08T20:34:59,831 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,831 directory, all directories are treated like packages. 2025-09-08T20:34:59,831 ******************************************************************************** 2025-09-08T20:34:59,832 !! 2025-09-08T20:34:59,832 check.warn(importable) 2025-09-08T20:34:59,832 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,832 !! 2025-09-08T20:34:59,832 ******************************************************************************** 2025-09-08T20:34:59,832 ############################ 2025-09-08T20:34:59,832 # Package would be ignored # 2025-09-08T20:34:59,832 ############################ 2025-09-08T20:34:59,832 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-08T20:34:59,833 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,833 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-08T20:34:59,833 to the `packages` configuration field. 2025-09-08T20:34:59,833 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,833 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,833 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,834 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,834 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-08T20:34:59,834 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-08T20:34:59,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,834 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,834 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,835 even if it does not contain any `.py` files. 2025-09-08T20:34:59,835 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,835 directory, all directories are treated like packages. 2025-09-08T20:34:59,835 ******************************************************************************** 2025-09-08T20:34:59,835 !! 2025-09-08T20:34:59,835 check.warn(importable) 2025-09-08T20:34:59,836 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,836 !! 2025-09-08T20:34:59,836 ******************************************************************************** 2025-09-08T20:34:59,836 ############################ 2025-09-08T20:34:59,836 # Package would be ignored # 2025-09-08T20:34:59,836 ############################ 2025-09-08T20:34:59,836 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-08T20:34:59,836 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,836 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,837 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-08T20:34:59,837 to the `packages` configuration field. 2025-09-08T20:34:59,837 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,837 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,837 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,837 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-08T20:34:59,838 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-08T20:34:59,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,838 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,838 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,838 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,839 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,839 even if it does not contain any `.py` files. 2025-09-08T20:34:59,839 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,839 directory, all directories are treated like packages. 2025-09-08T20:34:59,839 ******************************************************************************** 2025-09-08T20:34:59,839 !! 2025-09-08T20:34:59,839 check.warn(importable) 2025-09-08T20:34:59,839 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-08T20:34:59,839 !! 2025-09-08T20:34:59,840 ******************************************************************************** 2025-09-08T20:34:59,840 ############################ 2025-09-08T20:34:59,840 # Package would be ignored # 2025-09-08T20:34:59,840 ############################ 2025-09-08T20:34:59,840 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-08T20:34:59,840 but it is absent from setuptools' `packages` configuration. 2025-09-08T20:34:59,840 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T20:34:59,840 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-08T20:34:59,840 to the `packages` configuration field. 2025-09-08T20:34:59,841 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T20:34:59,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T20:34:59,841 instead of `find_packages(...)`/`find:`). 2025-09-08T20:34:59,841 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T20:34:59,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T20:34:59,841 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-08T20:34:59,841 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-08T20:34:59,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T20:34:59,842 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T20:34:59,842 combination with a more fine grained `package-data` configuration. 2025-09-08T20:34:59,842 You can read more about "package data files" on setuptools documentation page: 2025-09-08T20:34:59,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T20:34:59,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T20:34:59,842 even if it does not contain any `.py` files. 2025-09-08T20:34:59,843 On the other hand, currently there is no concept of package data 2025-09-08T20:34:59,843 directory, all directories are treated like packages. 2025-09-08T20:34:59,843 ******************************************************************************** 2025-09-08T20:34:59,843 !! 2025-09-08T20:34:59,843 check.warn(importable) 2025-09-08T20:34:59,843 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T20:34:59,843 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T20:34:59,843 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T20:34:59,843 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T20:34:59,843 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T20:34:59,844 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T20:34:59,844 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,844 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,845 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,847 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,847 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,848 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T20:34:59,850 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T20:34:59,850 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T20:34:59,851 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T20:34:59,852 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,852 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,853 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,857 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,857 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,858 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,859 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,860 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,860 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T20:34:59,861 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,861 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,861 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,862 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,863 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,863 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T20:34:59,864 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T20:34:59,864 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T20:34:59,865 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T20:34:59,865 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T20:34:59,866 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T20:34:59,866 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,867 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,867 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,868 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,869 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,869 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,870 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,871 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,871 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,872 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,872 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,873 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,873 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,874 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,874 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T20:34:59,875 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T20:34:59,875 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T20:34:59,875 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T20:34:59,876 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,876 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,877 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,878 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,879 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,879 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,880 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,880 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,881 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,882 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,882 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T20:34:59,883 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,883 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,884 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,884 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,885 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,885 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,886 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,886 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,887 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,888 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,888 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,889 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,889 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,890 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,890 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,891 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,892 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T20:34:59,892 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T20:34:59,892 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T20:34:59,893 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T20:34:59,894 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T20:34:59,894 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T20:34:59,895 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T20:34:59,895 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T20:34:59,895 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T20:34:59,896 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T20:34:59,896 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T20:34:59,897 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T20:34:59,897 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T20:34:59,898 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T20:34:59,898 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T20:34:59,899 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T20:34:59,899 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,899 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,900 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,901 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,902 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,902 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,903 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,904 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,904 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,905 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T20:34:59,905 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T20:34:59,906 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T20:34:59,906 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T20:34:59,907 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T20:34:59,907 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T20:34:59,908 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T20:34:59,908 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T20:34:59,909 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T20:34:59,909 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,909 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,910 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,911 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,912 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,912 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,913 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,913 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,914 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,915 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,916 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T20:34:59,916 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T20:34:59,916 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T20:34:59,917 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T20:34:59,917 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T20:34:59,918 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T20:34:59,918 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T20:34:59,919 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T20:34:59,919 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T20:34:59,920 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,920 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,921 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,922 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,922 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,923 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,924 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,924 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,925 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,926 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,926 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T20:34:59,927 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,927 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,928 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,928 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,929 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,929 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,930 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,930 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,931 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,932 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,932 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,933 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,933 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,934 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,934 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,935 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,936 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T20:34:59,936 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T20:34:59,936 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T20:34:59,937 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T20:34:59,937 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T20:34:59,938 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T20:34:59,938 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T20:34:59,939 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T20:34:59,939 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T20:34:59,940 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T20:34:59,940 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T20:34:59,940 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T20:34:59,941 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T20:34:59,941 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T20:34:59,942 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T20:34:59,942 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T20:34:59,943 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,943 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,944 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,945 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,945 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,946 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,946 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,947 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,948 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,949 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,949 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T20:34:59,950 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T20:34:59,950 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T20:34:59,950 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T20:34:59,951 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T20:34:59,952 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T20:34:59,952 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T20:34:59,952 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T20:34:59,953 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T20:34:59,954 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,954 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,955 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,956 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,957 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,958 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,958 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,960 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,961 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,961 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T20:34:59,962 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T20:34:59,962 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T20:34:59,962 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T20:34:59,963 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T20:34:59,964 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T20:34:59,964 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T20:34:59,964 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T20:34:59,965 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T20:34:59,965 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,966 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,966 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,968 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,969 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,969 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,970 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,972 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,972 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,973 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,978 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T20:34:59,978 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T20:34:59,979 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T20:34:59,979 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T20:34:59,980 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T20:34:59,980 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T20:34:59,981 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T20:34:59,981 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T20:34:59,982 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T20:34:59,982 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,982 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,983 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,984 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,985 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,985 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,986 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,987 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,988 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,988 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,989 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T20:34:59,989 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,989 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,990 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,991 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,991 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,992 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,992 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,993 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,993 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,994 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,995 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,995 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,996 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,996 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,997 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,997 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,998 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T20:34:59,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T20:34:59,999 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T20:34:59,999 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T20:35:00,000 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T20:35:00,000 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T20:35:00,001 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T20:35:00,001 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T20:35:00,001 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T20:35:00,002 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T20:35:00,002 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T20:35:00,003 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T20:35:00,003 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T20:35:00,004 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T20:35:00,004 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T20:35:00,005 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T20:35:00,005 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,005 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,006 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,007 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,008 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,008 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,009 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,010 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,010 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,011 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,012 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T20:35:00,012 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T20:35:00,012 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T20:35:00,013 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T20:35:00,013 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T20:35:00,014 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T20:35:00,014 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T20:35:00,015 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T20:35:00,015 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T20:35:00,016 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T20:35:00,016 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,017 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,017 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,018 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,019 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,019 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,020 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,021 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,022 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,022 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,023 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T20:35:00,023 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T20:35:00,023 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T20:35:00,024 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T20:35:00,025 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T20:35:00,025 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T20:35:00,026 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T20:35:00,026 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T20:35:00,026 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T20:35:00,027 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,027 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,028 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,029 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,029 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,030 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,031 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,031 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,032 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,033 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,034 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T20:35:00,034 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T20:35:00,034 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T20:35:00,035 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T20:35:00,035 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T20:35:00,036 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T20:35:00,036 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T20:35:00,037 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T20:35:00,037 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T20:35:00,038 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T20:35:00,038 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,039 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,039 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,040 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,041 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,041 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,042 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,043 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,044 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,044 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,045 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T20:35:00,045 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T20:35:00,045 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T20:35:00,046 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T20:35:00,047 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T20:35:00,047 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T20:35:00,048 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T20:35:00,048 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T20:35:00,048 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T20:35:00,049 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,049 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,050 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,051 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,051 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,052 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,053 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,053 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,054 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,055 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,055 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T20:35:00,056 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T20:35:00,056 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T20:35:00,057 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T20:35:00,057 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T20:35:00,058 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T20:35:00,058 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T20:35:00,058 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T20:35:00,059 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T20:35:00,059 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,060 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,060 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,061 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,062 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,063 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,063 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,064 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,065 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,065 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T20:35:00,066 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T20:35:00,066 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T20:35:00,067 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T20:35:00,067 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T20:35:00,068 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T20:35:00,068 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T20:35:00,068 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T20:35:00,069 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T20:35:00,069 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,070 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,070 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,071 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,072 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,072 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,073 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,074 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,075 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,075 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,076 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T20:35:00,076 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T20:35:00,077 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T20:35:00,077 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T20:35:00,078 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T20:35:00,078 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T20:35:00,079 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T20:35:00,079 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T20:35:00,079 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T20:35:00,080 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,080 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,081 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,082 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,083 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,085 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,085 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,086 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,087 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,088 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,089 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,089 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T20:35:00,090 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T20:35:00,090 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T20:35:00,091 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T20:35:00,091 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T20:35:00,092 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T20:35:00,092 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T20:35:00,092 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T20:35:00,093 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T20:35:00,093 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,094 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,094 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,095 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,096 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,097 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,097 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,098 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,099 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,099 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,100 copying lightdock/test/bin/golden_data/regression_pydock_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T20:35:00,100 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T20:35:00,100 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T20:35:00,101 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T20:35:00,102 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T20:35:00,102 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T20:35:00,103 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T20:35:00,103 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T20:35:00,103 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T20:35:00,104 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T20:35:00,105 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,105 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,105 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,106 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,108 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,109 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,110 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,110 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,111 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,111 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T20:35:00,112 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T20:35:00,112 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T20:35:00,112 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T20:35:00,113 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T20:35:00,114 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T20:35:00,114 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T20:35:00,115 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T20:35:00,115 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T20:35:00,116 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,116 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,117 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,118 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,118 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,119 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,120 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,120 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,121 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,123 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T20:35:00,124 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,124 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,125 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,125 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,126 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,126 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,127 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,127 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,128 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,128 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,129 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,130 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,130 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,131 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,131 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,132 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,132 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T20:35:00,133 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,133 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,136 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,138 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,139 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,141 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,142 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,144 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T20:35:00,144 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,145 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,145 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,146 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,146 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,147 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,147 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,148 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,148 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,149 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,149 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,150 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,150 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,151 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,151 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,152 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,152 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,153 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,154 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,154 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,155 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,155 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,156 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,156 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,157 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,157 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,158 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,158 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,159 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,159 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,160 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,160 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,161 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,161 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,162 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,162 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,163 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,163 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,164 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,165 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,165 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,166 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,166 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,167 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T20:35:00,167 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,167 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,170 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,173 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,174 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,176 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,176 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,178 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,179 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T20:35:00,179 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,180 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,180 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,181 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,181 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,182 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,182 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,183 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,183 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,184 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,184 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,185 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,185 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,186 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,186 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,187 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,188 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,188 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,189 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,189 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,190 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,190 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,191 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,191 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,192 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,192 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,193 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,193 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,194 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,195 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,195 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,196 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,196 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,197 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,197 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,198 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,198 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,199 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T20:35:00,199 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,199 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,200 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,201 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,202 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,202 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,204 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,204 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,205 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,207 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,208 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T20:35:00,208 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,208 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,209 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,210 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,210 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,211 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,211 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,212 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T20:35:00,212 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,212 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,216 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,217 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,218 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,218 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,219 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,220 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,220 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,221 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,222 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T20:35:00,222 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T20:35:00,223 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T20:35:00,223 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T20:35:00,224 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T20:35:00,225 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T20:35:00,225 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T20:35:00,226 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T20:35:00,226 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T20:35:00,227 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,227 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,228 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,229 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,229 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,230 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,230 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,231 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,232 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,232 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T20:35:00,233 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T20:35:00,233 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T20:35:00,234 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T20:35:00,235 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T20:35:00,235 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T20:35:00,236 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T20:35:00,236 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T20:35:00,236 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T20:35:00,237 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,237 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,241 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,242 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,243 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,243 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,244 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,244 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,245 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,246 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,247 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T20:35:00,247 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T20:35:00,247 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T20:35:00,248 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T20:35:00,248 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T20:35:00,250 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T20:35:00,250 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T20:35:00,250 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T20:35:00,251 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T20:35:00,251 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T20:35:00,252 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T20:35:00,252 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T20:35:00,253 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T20:35:00,254 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T20:35:00,255 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T20:35:00,255 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T20:35:00,273 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T20:35:00,294 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T20:35:00,296 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T20:35:00,296 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T20:35:00,298 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T20:35:00,299 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,299 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,301 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,301 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,302 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,304 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,304 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,305 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,305 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,307 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,310 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,310 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,311 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,312 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,313 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,313 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,314 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,314 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,315 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,316 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T20:35:00,316 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T20:35:00,316 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T20:35:00,317 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T20:35:00,319 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T20:35:00,320 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,320 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,321 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,322 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,322 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,323 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,324 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,324 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,325 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,325 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,326 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,327 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,327 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,328 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T20:35:00,328 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T20:35:00,328 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T20:35:00,329 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T20:35:00,329 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T20:35:00,330 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T20:35:00,330 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T20:35:00,331 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T20:35:00,332 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T20:35:00,332 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T20:35:00,332 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T20:35:00,333 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T20:35:00,334 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T20:35:00,334 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T20:35:00,334 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T20:35:00,335 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T20:35:00,336 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T20:35:00,336 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,336 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,337 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,337 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,338 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,339 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,340 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,342 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,343 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,344 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,345 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,346 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,348 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,349 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T20:35:00,350 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T20:35:00,350 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T20:35:00,351 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T20:35:00,351 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T20:35:00,352 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T20:35:00,352 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T20:35:00,354 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T20:35:00,356 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,356 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,357 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,357 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,358 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,359 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,361 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,363 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,365 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,366 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,368 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,370 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,371 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,373 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,375 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,376 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,378 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,380 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,382 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,383 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,385 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,387 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,388 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,390 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,392 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,393 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,395 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,397 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,398 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,400 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,402 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,403 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,405 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,407 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,408 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,410 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,412 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,413 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,415 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,417 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,419 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,420 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,422 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,424 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,425 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,427 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,429 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,430 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,432 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,434 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,435 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,437 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,439 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,440 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T20:35:00,442 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,442 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,443 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,443 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,444 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,446 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,447 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,449 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,451 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,453 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,454 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,456 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,458 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,459 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,461 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,463 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,464 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,466 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,468 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,469 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,471 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,473 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,475 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,476 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,478 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,480 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,481 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,483 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,485 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,486 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,488 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,490 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,491 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,493 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,495 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,496 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,498 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,500 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,501 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,503 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,505 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,507 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,508 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,510 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,512 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,514 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,515 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,517 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,519 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,520 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,522 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,524 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,525 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,527 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T20:35:00,529 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,529 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,530 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,530 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,531 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,533 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,534 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,536 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,538 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,539 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,541 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,543 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,545 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,547 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,549 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,551 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,553 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,555 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,557 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,558 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,560 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,562 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,564 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,565 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,567 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,569 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,570 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,572 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,574 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,576 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,577 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,579 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,581 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,582 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,584 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,586 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,588 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,590 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,593 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,595 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,596 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,598 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,600 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,601 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,604 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,606 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,608 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,610 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,612 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,614 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,616 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,618 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,620 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,622 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T20:35:00,623 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,624 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,624 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,625 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,626 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,627 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,629 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,631 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,632 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,634 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,636 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,638 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,639 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,641 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,643 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,644 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,646 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,648 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,649 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,651 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,653 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,655 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,656 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,658 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,660 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,661 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,663 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,665 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,667 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,668 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,670 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,672 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,673 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,675 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,677 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,678 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,680 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,682 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,684 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,685 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,687 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,689 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,690 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,692 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,694 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,695 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,697 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,699 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,701 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,702 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,704 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,706 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,707 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,709 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T20:35:00,711 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,711 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,712 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,713 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,713 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,714 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,716 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,716 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T20:35:00,717 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T20:35:00,718 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T20:35:00,718 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T20:35:00,719 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,719 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,720 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,721 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,723 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,724 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,725 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,728 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,729 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,729 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,731 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,733 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,734 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,736 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,738 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,739 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,741 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,743 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,744 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T20:35:00,746 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,746 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,748 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,749 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,750 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,753 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T20:35:00,754 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T20:35:00,754 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T20:35:00,754 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T20:35:00,755 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T20:35:00,757 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T20:35:00,758 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,759 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,759 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,760 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,761 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,762 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,762 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,763 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,764 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,764 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,765 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,766 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,767 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,767 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,768 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,769 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,769 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,770 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T20:35:00,771 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T20:35:00,771 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T20:35:00,771 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T20:35:00,772 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T20:35:00,772 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T20:35:00,773 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T20:35:00,774 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T20:35:00,774 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T20:35:00,774 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T20:35:00,775 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T20:35:00,775 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T20:35:00,776 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T20:35:00,776 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T20:35:00,777 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T20:35:00,777 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T20:35:00,777 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T20:35:00,802 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T20:35:00,802 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T20:35:00,828 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T20:35:00,844 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T20:35:00,844 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T20:35:00,869 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T20:35:00,869 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T20:35:00,870 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T20:35:00,870 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T20:35:00,872 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T20:35:00,873 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T20:35:00,873 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T20:35:00,874 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T20:35:00,875 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T20:35:00,876 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:35:00,877 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:35:00,879 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:35:00,880 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:35:00,881 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:35:00,882 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:35:00,883 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T20:35:00,897 running build_ext 2025-09-08T20:35:01,232 building 'lightdock.mathutil.cython.cutil' extension 2025-09-08T20:35:01,233 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T20:35:01,233 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-08T20:35:01,582 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T20:35:01,582 196 | #include "longintrepr.h" 2025-09-08T20:35:01,582 | ^~~~~~~~~~~~~~~ 2025-09-08T20:35:01,582 compilation terminated. 2025-09-08T20:35:01,585 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T20:35:01,764 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T20:35:01,776 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T20:35:01,776 exec(compile('"'"''"'"''"'"' 2025-09-08T20:35:01,776 # This is -- a caller that pip uses to run setup.py 2025-09-08T20:35:01,776 # 2025-09-08T20:35:01,776 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T20:35:01,776 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T20:35:01,776 # - It provides a clear error message when setuptools is not installed. 2025-09-08T20:35:01,776 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T20:35:01,776 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T20:35:01,776 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T20:35:01,776 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T20:35:01,776 import os, sys, tokenize, traceback 2025-09-08T20:35:01,776 2025-09-08T20:35:01,776 try: 2025-09-08T20:35:01,776 import setuptools 2025-09-08T20:35:01,776 except ImportError: 2025-09-08T20:35:01,776 print( 2025-09-08T20:35:01,776 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T20:35:01,776 "the build environment with exception:", 2025-09-08T20:35:01,776 file=sys.stderr, 2025-09-08T20:35:01,776 ) 2025-09-08T20:35:01,776 traceback.print_exc() 2025-09-08T20:35:01,776 sys.exit(1) 2025-09-08T20:35:01,776 2025-09-08T20:35:01,776 __file__ = %r 2025-09-08T20:35:01,776 sys.argv[0] = __file__ 2025-09-08T20:35:01,776 2025-09-08T20:35:01,776 if os.path.exists(__file__): 2025-09-08T20:35:01,776 filename = __file__ 2025-09-08T20:35:01,776 with tokenize.open(__file__) as f: 2025-09-08T20:35:01,776 setup_py_code = f.read() 2025-09-08T20:35:01,776 else: 2025-09-08T20:35:01,776 filename = "" 2025-09-08T20:35:01,776 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T20:35:01,776 2025-09-08T20:35:01,776 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T20:35:01,776 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-mckj91p8[/] 2025-09-08T20:35:01,776 [bold magenta]cwd[/]: /tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/ 2025-09-08T20:35:01,776 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-08T20:35:01,777 ERROR: Failed building wheel for lightdock 2025-09-08T20:35:01,777 Running setup.py clean for lightdock 2025-09-08T20:35:01,778 Running command python setup.py clean 2025-09-08T20:35:02,292 /tmp/pip-wheel-mhl8ck8v/lightdock_f7c68336099f47db9b24ceafcf2060d9/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T20:35:02,293 !! 2025-09-08T20:35:02,293 ******************************************************************************** 2025-09-08T20:35:02,293 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T20:35:02,293 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T20:35:02,293 calls to avoid build errors in the future. 2025-09-08T20:35:02,293 ******************************************************************************** 2025-09-08T20:35:02,294 !! 2025-09-08T20:35:02,294 from setuptools.command.test import test as TestCommand 2025-09-08T20:35:02,622 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T20:35:02,622 !! 2025-09-08T20:35:02,622 ******************************************************************************** 2025-09-08T20:35:02,622 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T20:35:02,622 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T20:35:02,623 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T20:35:02,623 or your builds will no longer be supported. 2025-09-08T20:35:02,623 ******************************************************************************** 2025-09-08T20:35:02,623 !! 2025-09-08T20:35:02,623 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T20:35:03,467 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T20:35:03,467 !! 2025-09-08T20:35:03,468 ******************************************************************************** 2025-09-08T20:35:03,468 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T20:35:03,468 License :: Free For Educational Use 2025-09-08T20:35:03,468 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T20:35:03,468 ******************************************************************************** 2025-09-08T20:35:03,468 !! 2025-09-08T20:35:03,468 self._finalize_license_expression() 2025-09-08T20:35:03,546 running clean 2025-09-08T20:35:03,693 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T20:35:03,693 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T20:35:03,780 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T20:35:03,780 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T20:35:03,780 removing 'build' 2025-09-08T20:35:03,921 Failed to build lightdock 2025-09-08T20:35:03,921 ERROR: Failed to build one or more wheels 2025-09-08T20:35:03,922 Exception information: 2025-09-08T20:35:03,922 Traceback (most recent call last): 2025-09-08T20:35:03,922 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T20:35:03,922 status = _inner_run() 2025-09-08T20:35:03,922 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T20:35:03,922 return self.run(options, args) 2025-09-08T20:35:03,922 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T20:35:03,922 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T20:35:03,922 return func(self, options, args) 2025-09-08T20:35:03,922 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T20:35:03,922 raise CommandError("Failed to build one or more wheels") 2025-09-08T20:35:03,922 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T20:35:03,926 Removed build tracker: '/tmp/pip-build-tracker-uczu1y8q'