2025-09-08T20:53:52,245 Created temporary directory: /tmp/pip-build-tracker-2ak3tjpp 2025-09-08T20:53:52,246 Initialized build tracking at /tmp/pip-build-tracker-2ak3tjpp 2025-09-08T20:53:52,246 Created build tracker: /tmp/pip-build-tracker-2ak3tjpp 2025-09-08T20:53:52,246 Entered build tracker: /tmp/pip-build-tracker-2ak3tjpp 2025-09-08T20:53:52,246 Created temporary directory: /tmp/pip-wheel-phfs5qc8 2025-09-08T20:53:52,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-xlhezxhs 2025-09-08T20:53:52,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T20:53:52,308 2 location(s) to search for versions of amlearn: 2025-09-08T20:53:52,308 * https://pypi.org/simple/amlearn/ 2025-09-08T20:53:52,308 * https://www.piwheels.org/simple/amlearn/ 2025-09-08T20:53:52,309 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2025-09-08T20:53:52,309 Getting page https://pypi.org/simple/amlearn/ 2025-09-08T20:53:52,310 Found index url https://pypi.org/simple/ 2025-09-08T20:53:52,398 Fetched page https://pypi.org/simple/amlearn/ as application/vnd.pypi.simple.v1+json 2025-09-08T20:53:52,400 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2025-09-08T20:53:52,400 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.1.0 2025-09-08T20:53:52,400 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.0 2025-09-08T20:53:52,401 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.1 2025-09-08T20:53:52,401 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.2 2025-09-08T20:53:52,401 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.3 2025-09-08T20:53:52,401 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.4 2025-09-08T20:53:52,401 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.5 2025-09-08T20:53:52,402 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.6 2025-09-08T20:53:52,402 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.1 2025-09-08T20:53:52,402 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.2 2025-09-08T20:53:52,402 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.3 2025-09-08T20:53:52,402 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.4 2025-09-08T20:53:52,403 Fetching project page and analyzing links: https://www.piwheels.org/simple/amlearn/ 2025-09-08T20:53:52,403 Getting page https://www.piwheels.org/simple/amlearn/ 2025-09-08T20:53:52,404 Found index url https://www.piwheels.org/simple/ 2025-09-08T20:53:52,485 Fetched page https://www.piwheels.org/simple/amlearn/ as text/html 2025-09-08T20:53:52,486 Skipping link: not a file: https://www.piwheels.org/simple/amlearn/ 2025-09-08T20:53:52,487 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2025-09-08T20:53:52,514 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2025-09-08T20:53:52,515 Collecting amlearn==0.2.3 2025-09-08T20:53:52,516 Created temporary directory: /tmp/pip-unpack-e_w93m6y 2025-09-08T20:53:52,653 Downloading amlearn-0.2.3.tar.gz (82 kB) 2025-09-08T20:53:52,726 Added amlearn==0.2.3 from https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-2ak3tjpp' 2025-09-08T20:53:52,728 Running setup.py (path:/tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/setup.py) egg_info for package amlearn 2025-09-08T20:53:52,728 Created temporary directory: /tmp/pip-pip-egg-info-s33e1lp8 2025-09-08T20:53:52,728 Preparing metadata (setup.py): started 2025-09-08T20:53:52,729 Running command python setup.py egg_info 2025-09-08T20:53:53,488 Traceback (most recent call last): 2025-09-08T20:53:53,489 File "/tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/setup.py", line 8, in 2025-09-08T20:53:53,489 from numpy.distutils.core import Extension, setup 2025-09-08T20:53:53,489 ModuleNotFoundError: No module named 'numpy.distutils' 2025-09-08T20:53:53,489 During handling of the above exception, another exception occurred: 2025-09-08T20:53:53,489 Traceback (most recent call last): 2025-09-08T20:53:53,490 File "", line 2, in 2025-09-08T20:53:53,490 exec(compile(''' 2025-09-08T20:53:53,490 ~~~~^^^^^^^^^^^^ 2025-09-08T20:53:53,490 # This is -- a caller that pip uses to run setup.py 2025-09-08T20:53:53,490 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,491 ...<32 lines>... 2025-09-08T20:53:53,491 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T20:53:53,491 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,491 ''' % ('/tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/setup.py',), "", "exec")) 2025-09-08T20:53:53,491 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,491 File "", line 35, in 2025-09-08T20:53:53,491 File "/tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/setup.py", line 16, in 2025-09-08T20:53:53,492 raise RuntimeError(msg) 2025-09-08T20:53:53,492 RuntimeError: Please install numpy (version 1.7.0 or greater) before installing Amlearn. Because Amlearn uses numpy's f2py to compile the fortran modules to speed up the calculation of featurizer. like: $ conda install numpy $ pip install numpy 2025-09-08T20:53:53,598 ERROR: python setup.py egg_info exited with 1 2025-09-08T20:53:53,611 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T20:53:53,611 exec(compile('"'"''"'"''"'"' 2025-09-08T20:53:53,611 # This is -- a caller that pip uses to run setup.py 2025-09-08T20:53:53,611 # 2025-09-08T20:53:53,611 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T20:53:53,611 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T20:53:53,611 # - It provides a clear error message when setuptools is not installed. 2025-09-08T20:53:53,611 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T20:53:53,611 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T20:53:53,611 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T20:53:53,611 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T20:53:53,611 import os, sys, tokenize, traceback 2025-09-08T20:53:53,611 2025-09-08T20:53:53,611 try: 2025-09-08T20:53:53,611 import setuptools 2025-09-08T20:53:53,611 except ImportError: 2025-09-08T20:53:53,611 print( 2025-09-08T20:53:53,611 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T20:53:53,611 "the build environment with exception:", 2025-09-08T20:53:53,611 file=sys.stderr, 2025-09-08T20:53:53,611 ) 2025-09-08T20:53:53,611 traceback.print_exc() 2025-09-08T20:53:53,611 sys.exit(1) 2025-09-08T20:53:53,611 2025-09-08T20:53:53,611 __file__ = %r 2025-09-08T20:53:53,611 sys.argv[0] = __file__ 2025-09-08T20:53:53,611 2025-09-08T20:53:53,611 if os.path.exists(__file__): 2025-09-08T20:53:53,611 filename = __file__ 2025-09-08T20:53:53,611 with tokenize.open(__file__) as f: 2025-09-08T20:53:53,611 setup_py_code = f.read() 2025-09-08T20:53:53,611 else: 2025-09-08T20:53:53,611 filename = "" 2025-09-08T20:53:53,611 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T20:53:53,611 2025-09-08T20:53:53,611 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T20:53:53,611 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-s33e1lp8[/] 2025-09-08T20:53:53,611 [bold magenta]cwd[/]: /tmp/pip-wheel-phfs5qc8/amlearn_3afea06d10f946e0b088bdc17cc6b7fe/ 2025-09-08T20:53:53,611 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T20:53:53,612 ERROR: metadata generation failed 2025-09-08T20:53:53,618 Exception information: 2025-09-08T20:53:53,618 Traceback (most recent call last): 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T20:53:53,618 call_subprocess( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 args, 2025-09-08T20:53:53,618 ^^^^^ 2025-09-08T20:53:53,618 ...<2 lines>... 2025-09-08T20:53:53,618 spinner=spinner, 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T20:53:53,618 raise error 2025-09-08T20:53:53,618 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T20:53:53,618 2025-09-08T20:53:53,618 The above exception was the direct cause of the following exception: 2025-09-08T20:53:53,618 2025-09-08T20:53:53,618 Traceback (most recent call last): 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T20:53:53,618 status = _inner_run() 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T20:53:53,618 return self.run(options, args) 2025-09-08T20:53:53,618 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T20:53:53,618 return func(self, options, args) 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T20:53:53,618 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T20:53:53,618 result = self._result = resolver.resolve( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T20:53:53,618 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T20:53:53,618 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T20:53:53,618 if not criterion.candidates: 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T20:53:53,618 return bool(self._sequence) 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T20:53:53,618 self._bool = any(self) 2025-09-08T20:53:53,618 ~~~^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T20:53:53,618 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T20:53:53,618 ^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T20:53:53,618 candidate = func() 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T20:53:53,618 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 link, template, name, version 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T20:53:53,618 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 link, 2025-09-08T20:53:53,618 ^^^^^ 2025-09-08T20:53:53,618 ...<3 lines>... 2025-09-08T20:53:53,618 version=version, 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T20:53:53,618 super().__init__( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 link=link, 2025-09-08T20:53:53,618 ^^^^^^^^^^ 2025-09-08T20:53:53,618 ...<4 lines>... 2025-09-08T20:53:53,618 version=version, 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T20:53:53,618 self.dist = self._prepare() 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T20:53:53,618 dist = self._prepare_distribution() 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T20:53:53,618 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T20:53:53,618 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T20:53:53,618 dist = _get_prepared_distribution( 2025-09-08T20:53:53,618 req, 2025-09-08T20:53:53,618 ...<3 lines>... 2025-09-08T20:53:53,618 self.check_build_deps, 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T20:53:53,618 abstract_dist.prepare_distribution_metadata( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 finder, build_isolation, check_build_deps 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T20:53:53,618 self.req.prepare_metadata() 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T20:53:53,618 self.metadata_directory = generate_metadata_legacy( 2025-09-08T20:53:53,618 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T20:53:53,618 build_env=self.build_env, 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ...<3 lines>... 2025-09-08T20:53:53,618 details=details, 2025-09-08T20:53:53,618 ^^^^^^^^^^^^^^^^ 2025-09-08T20:53:53,618 ) 2025-09-08T20:53:53,618 ^ 2025-09-08T20:53:53,618 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T20:53:53,618 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T20:53:53,618 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T20:53:53,640 Removed amlearn==0.2.3 from https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-2ak3tjpp' 2025-09-08T20:53:53,640 Removed build tracker: '/tmp/pip-build-tracker-2ak3tjpp'