2025-09-08T21:09:08,059 Created temporary directory: /tmp/pip-build-tracker-mz1smpkk 2025-09-08T21:09:08,060 Initialized build tracking at /tmp/pip-build-tracker-mz1smpkk 2025-09-08T21:09:08,060 Created build tracker: /tmp/pip-build-tracker-mz1smpkk 2025-09-08T21:09:08,060 Entered build tracker: /tmp/pip-build-tracker-mz1smpkk 2025-09-08T21:09:08,060 Created temporary directory: /tmp/pip-wheel-ohgba6wr 2025-09-08T21:09:08,064 Created temporary directory: /tmp/pip-ephem-wheel-cache-9d5xpk_8 2025-09-08T21:09:08,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T21:09:08,122 2 location(s) to search for versions of hca-cli: 2025-09-08T21:09:08,122 * https://pypi.org/simple/hca-cli/ 2025-09-08T21:09:08,122 * https://www.piwheels.org/simple/hca-cli/ 2025-09-08T21:09:08,123 Fetching project page and analyzing links: https://pypi.org/simple/hca-cli/ 2025-09-08T21:09:08,123 Getting page https://pypi.org/simple/hca-cli/ 2025-09-08T21:09:08,124 Found index url https://pypi.org/simple/ 2025-09-08T21:09:08,333 Fetched page https://pypi.org/simple/hca-cli/ as application/vnd.pypi.simple.v1+json 2025-09-08T21:09:08,335 Found link https://files.pythonhosted.org/packages/94/e4/2025455446209dc52eee9c9132246a618f02738664adee0596cb5325b1b1/hca-cli-0.1.0.tar.gz (from https://pypi.org/simple/hca-cli/), version: 0.1.0 2025-09-08T21:09:08,336 Skipping link: No binaries permitted for hca-cli: https://files.pythonhosted.org/packages/55/b5/463b8f36e927418fa73bce86f0da38eda1f0e16c18490440d4df6c281a99/hca_cli-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/hca-cli/) 2025-09-08T21:09:08,336 Found link https://files.pythonhosted.org/packages/30/31/2ee7c6502d6f91491fa692d7410bd168d60d58ba6474175668e0ac942bb8/hca-cli-0.1.1.tar.gz (from https://pypi.org/simple/hca-cli/), version: 0.1.1 2025-09-08T21:09:08,337 Found link https://files.pythonhosted.org/packages/c7/34/0d79d620b724959b53e87cba9b83f4f826add8d210a795925bb4339be69b/hca-cli-0.1.2.tar.gz (from https://pypi.org/simple/hca-cli/), version: 0.1.2 2025-09-08T21:09:08,338 Fetching project page and analyzing links: https://www.piwheels.org/simple/hca-cli/ 2025-09-08T21:09:08,338 Getting page https://www.piwheels.org/simple/hca-cli/ 2025-09-08T21:09:08,340 Found index url https://www.piwheels.org/simple/ 2025-09-08T21:09:08,439 Fetched page https://www.piwheels.org/simple/hca-cli/ as text/html 2025-09-08T21:09:08,440 Skipping link: No binaries permitted for hca-cli: https://archive1.piwheels.org/simple/hca-cli/hca_cli-0.1.1-py3-none-any.whl#sha256=127d12fb0724d391825c0730220a4f2c0392edc765bd26796c076cc5c4cadb4f (from https://www.piwheels.org/simple/hca-cli/) 2025-09-08T21:09:08,440 Skipping link: No binaries permitted for hca-cli: https://archive1.piwheels.org/simple/hca-cli/hca_cli-0.1.0-py2.py3-none-any.whl#sha256=c860d4740724e81a5895501e75f0008f8c57693b8167b78aa1e204fa111ee962 (from https://www.piwheels.org/simple/hca-cli/) 2025-09-08T21:09:08,441 Skipping link: not a file: https://www.piwheels.org/simple/hca-cli/ 2025-09-08T21:09:08,441 Skipping link: not a file: https://pypi.org/simple/hca-cli/ 2025-09-08T21:09:08,467 Given no hashes to check 1 links for project 'hca-cli': discarding no candidates 2025-09-08T21:09:08,468 Collecting hca-cli==0.1.2 2025-09-08T21:09:08,469 Created temporary directory: /tmp/pip-unpack-e_do6mxp 2025-09-08T21:09:08,671 Downloading hca-cli-0.1.2.tar.gz (1.0 kB) 2025-09-08T21:09:08,691 Added hca-cli==0.1.2 from https://files.pythonhosted.org/packages/c7/34/0d79d620b724959b53e87cba9b83f4f826add8d210a795925bb4339be69b/hca-cli-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-mz1smpkk' 2025-09-08T21:09:08,693 Running setup.py (path:/tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/setup.py) egg_info for package hca-cli 2025-09-08T21:09:08,694 Created temporary directory: /tmp/pip-pip-egg-info-f332n8iq 2025-09-08T21:09:08,694 Preparing metadata (setup.py): started 2025-09-08T21:09:08,696 Running command python setup.py egg_info 2025-09-08T21:09:09,591 running egg_info 2025-09-08T21:09:09,672 creating /tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info 2025-09-08T21:09:09,673 writing /tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/PKG-INFO 2025-09-08T21:09:09,674 writing dependency_links to /tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/dependency_links.txt 2025-09-08T21:09:09,675 writing top-level names to /tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/top_level.txt 2025-09-08T21:09:09,676 writing manifest file '/tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/SOURCES.txt' 2025-09-08T21:09:09,811 reading manifest file '/tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/SOURCES.txt' 2025-09-08T21:09:09,813 writing manifest file '/tmp/pip-pip-egg-info-f332n8iq/hca_cli.egg-info/SOURCES.txt' 2025-09-08T21:09:09,907 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T21:09:09,912 Source in /tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58 has version 0.1.2, which satisfies requirement hca-cli==0.1.2 from https://files.pythonhosted.org/packages/c7/34/0d79d620b724959b53e87cba9b83f4f826add8d210a795925bb4339be69b/hca-cli-0.1.2.tar.gz 2025-09-08T21:09:09,912 Removed hca-cli==0.1.2 from https://files.pythonhosted.org/packages/c7/34/0d79d620b724959b53e87cba9b83f4f826add8d210a795925bb4339be69b/hca-cli-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-mz1smpkk' 2025-09-08T21:09:09,915 Created temporary directory: /tmp/pip-unpack-jolp__y3 2025-09-08T21:09:09,915 Created temporary directory: /tmp/pip-unpack-rj1etwrk 2025-09-08T21:09:09,916 Building wheels for collected packages: hca-cli 2025-09-08T21:09:09,917 Created temporary directory: /tmp/pip-wheel-w5jz111w 2025-09-08T21:09:09,917 DEPRECATION: Building 'hca-cli' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hca-cli'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T21:09:09,918 Building wheel for hca-cli (setup.py): started 2025-09-08T21:09:09,919 Destination directory: /tmp/pip-wheel-w5jz111w 2025-09-08T21:09:09,919 Running command python setup.py bdist_wheel 2025-09-08T21:09:10,759 running bdist_wheel 2025-09-08T21:09:11,283 running build 2025-09-08T21:09:11,284 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T21:09:11,285 !! 2025-09-08T21:09:11,285 ******************************************************************************** 2025-09-08T21:09:11,285 Please avoid running ``setup.py`` directly. 2025-09-08T21:09:11,285 Instead, use pypa/build, pypa/installer or other 2025-09-08T21:09:11,285 standards-based tools. 2025-09-08T21:09:11,285 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T21:09:11,285 or your builds will no longer be supported. 2025-09-08T21:09:11,285 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T21:09:11,286 ******************************************************************************** 2025-09-08T21:09:11,286 !! 2025-09-08T21:09:11,286 self.initialize_options() 2025-09-08T21:09:11,353 installing to build/bdist.linux-armv7l/wheel 2025-09-08T21:09:11,354 running install 2025-09-08T21:09:11,381 Traceback (most recent call last): 2025-09-08T21:09:11,386 File "", line 2, in 2025-09-08T21:09:11,386 exec(compile(''' 2025-09-08T21:09:11,386 ~~~~^^^^^^^^^^^^ 2025-09-08T21:09:11,386 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:09:11,386 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:09:11,386 ...<32 lines>... 2025-09-08T21:09:11,386 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:09:11,386 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:09:11,387 ''' % ('/tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/setup.py',), "", "exec")) 2025-09-08T21:09:11,387 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:09:11,387 File "", line 35, in 2025-09-08T21:09:11,387 File "/tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/setup.py", line 28, in 2025-09-08T21:09:11,387 setup( 2025-09-08T21:09:11,387 ~~~~~^ 2025-09-08T21:09:11,387 name="hca-cli", 2025-09-08T21:09:11,387 ^^^^^^^^^^^^^^^ 2025-09-08T21:09:11,387 ...<10 lines>... 2025-09-08T21:09:11,388 } 2025-09-08T21:09:11,388 ^ 2025-09-08T21:09:11,388 ) 2025-09-08T21:09:11,388 ^ 2025-09-08T21:09:11,388 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T21:09:11,388 return distutils.core.setup(**attrs) 2025-09-08T21:09:11,388 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:09:11,388 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T21:09:11,388 return run_commands(dist) 2025-09-08T21:09:11,388 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T21:09:11,389 dist.run_commands() 2025-09-08T21:09:11,389 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:09:11,389 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T21:09:11,389 self.run_command(cmd) 2025-09-08T21:09:11,389 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T21:09:11,389 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:09:11,389 super().run_command(command) 2025-09-08T21:09:11,389 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:09:11,389 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:09:11,389 cmd_obj.run() 2025-09-08T21:09:11,390 ~~~~~~~~~~~^^ 2025-09-08T21:09:11,390 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 405, in run 2025-09-08T21:09:11,390 self.run_command("install") 2025-09-08T21:09:11,390 ~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-09-08T21:09:11,390 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T21:09:11,390 self.distribution.run_command(command) 2025-09-08T21:09:11,390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:09:11,390 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:09:11,390 super().run_command(command) 2025-09-08T21:09:11,390 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:09:11,391 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:09:11,391 cmd_obj.run() 2025-09-08T21:09:11,391 ~~~~~~~~~~~^^ 2025-09-08T21:09:11,391 File "/tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/setup.py", line 25, in run 2025-09-08T21:09:11,391 raise Exception(__doc__) 2025-09-08T21:09:11,391 Exception: 2025-09-08T21:09:11,391 *********************************************************** 2025-09-08T21:09:11,391 *** THE HUMAN CELL ATLAS DCP CLI IS AVAILABLE AT *** 2025-09-08T21:09:11,391 *** https://pypi.org/project/hca/ *** 2025-09-08T21:09:11,392 *** OR VIA *** 2025-09-08T21:09:11,392 *** `pip install hca` *** 2025-09-08T21:09:11,392 *** PLEASE REPLACE `hca-cli` WITH `hca` IN YOUR COMMAND *** 2025-09-08T21:09:11,392 *********************************************************** 2025-09-08T21:09:11,507 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T21:09:11,518 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T21:09:11,518 exec(compile('"'"''"'"''"'"' 2025-09-08T21:09:11,518 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:09:11,518 # 2025-09-08T21:09:11,518 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T21:09:11,518 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T21:09:11,518 # - It provides a clear error message when setuptools is not installed. 2025-09-08T21:09:11,518 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T21:09:11,518 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T21:09:11,518 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T21:09:11,518 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T21:09:11,518 import os, sys, tokenize, traceback 2025-09-08T21:09:11,518 2025-09-08T21:09:11,518 try: 2025-09-08T21:09:11,518 import setuptools 2025-09-08T21:09:11,518 except ImportError: 2025-09-08T21:09:11,518 print( 2025-09-08T21:09:11,518 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T21:09:11,518 "the build environment with exception:", 2025-09-08T21:09:11,518 file=sys.stderr, 2025-09-08T21:09:11,518 ) 2025-09-08T21:09:11,518 traceback.print_exc() 2025-09-08T21:09:11,518 sys.exit(1) 2025-09-08T21:09:11,518 2025-09-08T21:09:11,518 __file__ = %r 2025-09-08T21:09:11,518 sys.argv[0] = __file__ 2025-09-08T21:09:11,518 2025-09-08T21:09:11,518 if os.path.exists(__file__): 2025-09-08T21:09:11,518 filename = __file__ 2025-09-08T21:09:11,518 with tokenize.open(__file__) as f: 2025-09-08T21:09:11,518 setup_py_code = f.read() 2025-09-08T21:09:11,518 else: 2025-09-08T21:09:11,518 filename = "" 2025-09-08T21:09:11,518 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T21:09:11,518 2025-09-08T21:09:11,518 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:09:11,518 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-w5jz111w[/] 2025-09-08T21:09:11,518 [bold magenta]cwd[/]: /tmp/pip-wheel-ohgba6wr/hca-cli_14415fe37a91456b9c078f9823054c58/ 2025-09-08T21:09:11,519 Building wheel for hca-cli (setup.py): finished with status 'error' 2025-09-08T21:09:11,519 ERROR: Failed building wheel for hca-cli 2025-09-08T21:09:11,520 Running setup.py clean for hca-cli 2025-09-08T21:09:11,521 Running command python setup.py clean 2025-09-08T21:09:12,398 running clean 2025-09-08T21:09:12,545 'build/lib' does not exist -- can't clean it 2025-09-08T21:09:12,545 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T21:09:12,545 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T21:09:12,638 Failed to build hca-cli 2025-09-08T21:09:12,638 ERROR: Failed to build one or more wheels 2025-09-08T21:09:12,639 Exception information: 2025-09-08T21:09:12,639 Traceback (most recent call last): 2025-09-08T21:09:12,639 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T21:09:12,639 status = _inner_run() 2025-09-08T21:09:12,639 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T21:09:12,639 return self.run(options, args) 2025-09-08T21:09:12,639 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T21:09:12,639 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T21:09:12,639 return func(self, options, args) 2025-09-08T21:09:12,639 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T21:09:12,639 raise CommandError("Failed to build one or more wheels") 2025-09-08T21:09:12,639 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T21:09:12,643 Removed build tracker: '/tmp/pip-build-tracker-mz1smpkk'