2025-09-08T21:54:06,004 Created temporary directory: /tmp/pip-build-tracker-e2u60keo 2025-09-08T21:54:06,005 Initialized build tracking at /tmp/pip-build-tracker-e2u60keo 2025-09-08T21:54:06,005 Created build tracker: /tmp/pip-build-tracker-e2u60keo 2025-09-08T21:54:06,005 Entered build tracker: /tmp/pip-build-tracker-e2u60keo 2025-09-08T21:54:06,006 Created temporary directory: /tmp/pip-wheel-sm0821ll 2025-09-08T21:54:06,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-wu1lnma2 2025-09-08T21:54:06,065 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T21:54:06,067 2 location(s) to search for versions of cadishi: 2025-09-08T21:54:06,067 * https://pypi.org/simple/cadishi/ 2025-09-08T21:54:06,067 * https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:06,068 Fetching project page and analyzing links: https://pypi.org/simple/cadishi/ 2025-09-08T21:54:06,068 Getting page https://pypi.org/simple/cadishi/ 2025-09-08T21:54:06,069 Found index url https://pypi.org/simple/ 2025-09-08T21:54:06,140 Fetched page https://pypi.org/simple/cadishi/ as application/vnd.pypi.simple.v1+json 2025-09-08T21:54:06,141 Found link https://files.pythonhosted.org/packages/13/ad/054c2db4123903752e1f40791daeceec85a8ff2b0aa651a9282eef41b699/cadishi-1.1.0.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.0 2025-09-08T21:54:06,142 Found link https://files.pythonhosted.org/packages/6c/33/9b3a9db62bb89a8e59a842258318cb55911de1afd21272d6ed711eacbd11/cadishi-1.1.1.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.1 2025-09-08T21:54:06,142 Found link https://files.pythonhosted.org/packages/30/03/ef160bfd62658c17fdd67129d37d5ecf9c688488775ffe2ca2433a03b6e8/cadishi-1.1.2.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.2 2025-09-08T21:54:06,142 Found link https://files.pythonhosted.org/packages/59/99/836f833fb73a0ac7e5d0b48943fafabcae3129951820dedf3bb26c26083b/cadishi-1.1.3.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.3 2025-09-08T21:54:06,142 Found link https://files.pythonhosted.org/packages/4c/28/12600d1112a9b53ef9d786b71e7c1a374f1494907160c16d73d5b81079a9/cadishi-1.1.4.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.4 2025-09-08T21:54:06,143 Fetching project page and analyzing links: https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:06,143 Getting page https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:06,144 Found index url https://www.piwheels.org/simple/ 2025-09-08T21:54:06,252 Fetched page https://www.piwheels.org/simple/cadishi/ as text/html 2025-09-08T21:54:06,258 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp35-cp35m-linux_armv6l.whl#sha256=a960c1d5dc9d53a88ef77ef9877ca144b51c191e9a99207f8f49afeb533c21d6 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,258 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp35-cp35m-linux_armv7l.whl#sha256=a960c1d5dc9d53a88ef77ef9877ca144b51c191e9a99207f8f49afeb533c21d6 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,258 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=fd52fcc5a7e0eb0b84b3cb67f7f117587b98930d69282e7368504a734c0360f8 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=fd52fcc5a7e0eb0b84b3cb67f7f117587b98930d69282e7368504a734c0360f8 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=e970238dd66cff4098d3182847f88438372d2a143c7b335b8f9cd0da46a2ccc9 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=e970238dd66cff4098d3182847f88438372d2a143c7b335b8f9cd0da46a2ccc9 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp35-cp35m-linux_armv6l.whl#sha256=83253493ba1a00ec427109b4cb1d63157ffd95ebca6160a30c9820a2a9127b08 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp35-cp35m-linux_armv7l.whl#sha256=83253493ba1a00ec427109b4cb1d63157ffd95ebca6160a30c9820a2a9127b08 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=5533912a29b7f71487f1191e7840337dc2a2da7633ac3b57e760fe07954e8666 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,259 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=5533912a29b7f71487f1191e7840337dc2a2da7633ac3b57e760fe07954e8666 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0287bb5f640abd19dacf8000323ea53958591fe7f0accd57d4d23835de5a9247 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0287bb5f640abd19dacf8000323ea53958591fe7f0accd57d4d23835de5a9247 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=f90df9da68beb269af6592a6a4df0eec3f6c05b61d1a418d1615671577d6f45e (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=f90df9da68beb269af6592a6a4df0eec3f6c05b61d1a418d1615671577d6f45e (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp35-cp35m-linux_armv6l.whl#sha256=67a6b10794d32032611058d17824ec52f1b6f281fb5aa85dfd017c531a046368 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,260 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp35-cp35m-linux_armv7l.whl#sha256=67a6b10794d32032611058d17824ec52f1b6f281fb5aa85dfd017c531a046368 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=75f4753854471f871b2d190b88031c6cc3a2f0ba1d9d21f07eb712f5ba5d84ed (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=75f4753854471f871b2d190b88031c6cc3a2f0ba1d9d21f07eb712f5ba5d84ed (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp35-cp35m-linux_armv6l.whl#sha256=efaa91f3b6e77b806c154f8daddb7f3972cd9b8eff3a775da512ba086d9858c0 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp35-cp35m-linux_armv7l.whl#sha256=efaa91f3b6e77b806c154f8daddb7f3972cd9b8eff3a775da512ba086d9858c0 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=2e04241fbac97451ecd6c6eed2714875d41cafd0d437ece001b5352e4952cd3c (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=2e04241fbac97451ecd6c6eed2714875d41cafd0d437ece001b5352e4952cd3c (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=3912a8fd57beda3601f2bd547afa61fdd025156fc6048dbbb548f0839c99a50d (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,261 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=3912a8fd57beda3601f2bd547afa61fdd025156fc6048dbbb548f0839c99a50d (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=382832398d74a106a3813486e609b3fe7e74b250c5fa1d142c2b23c3eb45a82a (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=382832398d74a106a3813486e609b3fe7e74b250c5fa1d142c2b23c3eb45a82a (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=0eb0d94f6b3c81e884aec95ec3e966a6cc870e322fbf39e4551ad6cf472a1416 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=0eb0d94f6b3c81e884aec95ec3e966a6cc870e322fbf39e4551ad6cf472a1416 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=c2563c1673a2e2c3fb9c9675fdc8206197c7799d2734b859cfe2e7ed12666593 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,262 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=c2563c1673a2e2c3fb9c9675fdc8206197c7799d2734b859cfe2e7ed12666593 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:06,263 Skipping link: not a file: https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:06,263 Skipping link: not a file: https://pypi.org/simple/cadishi/ 2025-09-08T21:54:06,288 Given no hashes to check 1 links for project 'cadishi': discarding no candidates 2025-09-08T21:54:06,289 Collecting cadishi==1.1.2 2025-09-08T21:54:06,290 Created temporary directory: /tmp/pip-unpack-18jf2sur 2025-09-08T21:54:06,438 Downloading cadishi-1.1.2.tar.gz (4.3 MB) 2025-09-08T21:54:07,413 Added cadishi==1.1.2 from https://files.pythonhosted.org/packages/30/03/ef160bfd62658c17fdd67129d37d5ecf9c688488775ffe2ca2433a03b6e8/cadishi-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-e2u60keo' 2025-09-08T21:54:07,415 Running setup.py (path:/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py) egg_info for package cadishi 2025-09-08T21:54:07,415 Created temporary directory: /tmp/pip-pip-egg-info-ksbh8gzk 2025-09-08T21:54:07,415 Preparing metadata (setup.py): started 2025-09-08T21:54:07,416 Running command python setup.py egg_info 2025-09-08T21:54:07,949 /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py:486: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:54:07,949 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:54:08,843 ### Cadishi 1.1.2 setup configuration 2025-09-08T21:54:08,843 debug : False 2025-09-08T21:54:08,843 openmp : True 2025-09-08T21:54:08,843 gcc_native : False 2025-09-08T21:54:08,843 cuda : True 2025-09-08T21:54:08,843 safe_cuda_flags : False 2025-09-08T21:54:08,843 ### 2025-09-08T21:54:08,844 CUDA was _not_ detected 2025-09-08T21:54:08,844 Build using the GCC compiler 2025-09-08T21:54:08,844 Skipping cudh build 2025-09-08T21:54:08,844 running egg_info 2025-09-08T21:54:08,917 creating /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info 2025-09-08T21:54:08,917 writing /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/PKG-INFO 2025-09-08T21:54:08,918 writing dependency_links to /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/dependency_links.txt 2025-09-08T21:54:08,919 writing entry points to /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/entry_points.txt 2025-09-08T21:54:08,919 writing requirements to /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/requires.txt 2025-09-08T21:54:08,920 writing top-level names to /tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/top_level.txt 2025-09-08T21:54:08,920 writing manifest file '/tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:54:09,224 reading manifest file '/tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:54:09,225 reading manifest template 'MANIFEST.in' 2025-09-08T21:54:09,230 warning: no files found matching 'aux/*.sh' 2025-09-08T21:54:09,230 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-09-08T21:54:09,231 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T21:54:09,232 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T21:54:09,232 adding license file 'LICENSE.txt' 2025-09-08T21:54:09,232 adding license file 'AUTHORS.rst' 2025-09-08T21:54:09,238 writing manifest file '/tmp/pip-pip-egg-info-ksbh8gzk/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:54:09,375 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T21:54:09,380 Source in /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba has version 1.1.2, which satisfies requirement cadishi==1.1.2 from https://files.pythonhosted.org/packages/30/03/ef160bfd62658c17fdd67129d37d5ecf9c688488775ffe2ca2433a03b6e8/cadishi-1.1.2.tar.gz 2025-09-08T21:54:09,380 Removed cadishi==1.1.2 from https://files.pythonhosted.org/packages/30/03/ef160bfd62658c17fdd67129d37d5ecf9c688488775ffe2ca2433a03b6e8/cadishi-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-e2u60keo' 2025-09-08T21:54:09,384 Created temporary directory: /tmp/pip-unpack-ezdqdqij 2025-09-08T21:54:09,385 Created temporary directory: /tmp/pip-unpack-g69wj9qs 2025-09-08T21:54:09,385 Building wheels for collected packages: cadishi 2025-09-08T21:54:09,386 Created temporary directory: /tmp/pip-wheel-0cp5usnv 2025-09-08T21:54:09,386 DEPRECATION: Building 'cadishi' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cadishi'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T21:54:09,387 Building wheel for cadishi (setup.py): started 2025-09-08T21:54:09,388 Destination directory: /tmp/pip-wheel-0cp5usnv 2025-09-08T21:54:09,388 Running command python setup.py bdist_wheel 2025-09-08T21:54:09,906 /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py:486: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:54:09,907 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:54:10,164 ### Cadishi 1.1.2 setup configuration 2025-09-08T21:54:10,164 debug : False 2025-09-08T21:54:10,164 openmp : True 2025-09-08T21:54:10,164 gcc_native : False 2025-09-08T21:54:10,164 cuda : True 2025-09-08T21:54:10,164 safe_cuda_flags : False 2025-09-08T21:54:10,164 ### 2025-09-08T21:54:10,164 CUDA was _not_ detected 2025-09-08T21:54:10,165 Build using the GCC compiler 2025-09-08T21:54:10,179 Skipping cudh build 2025-09-08T21:54:10,733 running bdist_wheel 2025-09-08T21:54:11,037 running build 2025-09-08T21:54:11,037 running build_py 2025-09-08T21:54:11,118 creating build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,118 copying cadishi/worker.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,119 copying cadishi/version.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,120 copying cadishi/util.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,120 copying cadishi/pbc.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,121 copying cadishi/h5pickle.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,121 copying cadishi/githash.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,122 copying cadishi/dictfs.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,122 copying cadishi/dict_util.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,123 copying cadishi/base.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,123 copying cadishi/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:54:11,124 creating build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,124 copying cadishi/io/pickel.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,125 copying cadishi/io/md.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,126 copying cadishi/io/hdf5.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,126 copying cadishi/io/dummy.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,127 copying cadishi/io/ascii.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,127 copying cadishi/io/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:54:11,128 creating build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,128 copying cadishi/kernel/pydh.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,129 copying cadishi/kernel/dist.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,129 copying cadishi/kernel/cudh.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,130 copying cadishi/kernel/common.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,130 copying cadishi/kernel/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:54:11,131 creating build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,131 copying cadishi/tests/test_util_generate_random.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,132 copying cadishi/tests/test_pydh_dist.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,132 copying cadishi/tests/test_pydh_cudh.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,133 copying cadishi/tests/test_h5pickle.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,134 copying cadishi/tests/test_dictfs.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,134 copying cadishi/tests/test_dict_util.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,135 copying cadishi/tests/test_base_container.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,135 copying cadishi/tests/perf_kernel.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,136 copying cadishi/tests/minimal_driver.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,136 copying cadishi/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:54:11,137 creating build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,137 copying cadishi/exe/unpack.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,138 copying cadishi/exe/random_trajectory.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,138 copying cadishi/exe/merge.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,139 copying cadishi/exe/histograms_legacy.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,139 copying cadishi/exe/histograms_example.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,140 copying cadishi/exe/histograms.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,140 copying cadishi/exe/cli.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,141 copying cadishi/exe/check_parameter_file.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,141 copying cadishi/exe/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:54:11,144 creating build/lib.linux-armv7l-cpython-313/cadishi/tests/data 2025-09-08T21:54:11,144 copying cadishi/tests/data/trajectory.h5 -> build/lib.linux-armv7l-cpython-313/cadishi/tests/data 2025-09-08T21:54:11,162 creating build/lib.linux-armv7l-cpython-313/cadishi/data 2025-09-08T21:54:11,162 copying cadishi/data/histograms_template.yaml -> build/lib.linux-armv7l-cpython-313/cadishi/data 2025-09-08T21:54:11,164 running build_ext 2025-09-08T21:54:11,614 Compiling cadishi/kernel/c_dist.pyx because it changed. 2025-09-08T21:54:11,615 [1/1] Cythonizing cadishi/kernel/c_dist.pyx 2025-09-08T21:54:12,443 Error compiling Cython file: 2025-09-08T21:54:12,444 ------------------------------------------------------------ 2025-09-08T21:54:12,444 ... 2025-09-08T21:54:12,444 d+=tmp*tmp 2025-09-08T21:54:12,444 d=sqrt(d) 2025-09-08T21:54:12,444 #d=sqrt(((r[i] - r[j])**2).sum()) 2025-09-08T21:54:12,444 rIndex=int(d/rmax*nbins) 2025-09-08T21:54:12,444 if rIndex>=nbins: 2025-09-08T21:54:12,444 print "\n rIndex>=nbins\n" 2025-09-08T21:54:12,444 ^ 2025-09-08T21:54:12,444 ------------------------------------------------------------ 2025-09-08T21:54:12,445 cadishi/kernel/c_dist.pyx:36:22: Syntax error in simple statement list 2025-09-08T21:54:12,454 Traceback (most recent call last): 2025-09-08T21:54:12,463 File "", line 2, in 2025-09-08T21:54:12,463 exec(compile(''' 2025-09-08T21:54:12,463 ~~~~^^^^^^^^^^^^ 2025-09-08T21:54:12,463 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:54:12,463 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,463 ...<32 lines>... 2025-09-08T21:54:12,463 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:54:12,464 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,464 ''' % ('/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py',), "", "exec")) 2025-09-08T21:54:12,464 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,464 File "", line 35, in 2025-09-08T21:54:12,464 File "/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py", line 530, in 2025-09-08T21:54:12,464 setup( 2025-09-08T21:54:12,464 ~~~~~^ 2025-09-08T21:54:12,464 name="cadishi", 2025-09-08T21:54:12,465 ^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,465 ...<26 lines>... 2025-09-08T21:54:12,465 scripts=glob('aux/*.py')+glob('aux/*.bash'), 2025-09-08T21:54:12,465 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,465 zip_safe=False) 2025-09-08T21:54:12,465 ^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,465 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T21:54:12,465 return distutils.core.setup(**attrs) 2025-09-08T21:54:12,466 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,466 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T21:54:12,466 return run_commands(dist) 2025-09-08T21:54:12,466 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T21:54:12,466 dist.run_commands() 2025-09-08T21:54:12,466 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:54:12,466 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T21:54:12,466 self.run_command(cmd) 2025-09-08T21:54:12,466 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T21:54:12,467 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:54:12,467 super().run_command(command) 2025-09-08T21:54:12,467 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,467 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:54:12,467 cmd_obj.run() 2025-09-08T21:54:12,467 ~~~~~~~~~~~^^ 2025-09-08T21:54:12,467 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T21:54:12,467 self.run_command("build") 2025-09-08T21:54:12,468 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,468 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T21:54:12,468 self.distribution.run_command(command) 2025-09-08T21:54:12,468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,468 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:54:12,468 super().run_command(command) 2025-09-08T21:54:12,468 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,469 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:54:12,469 cmd_obj.run() 2025-09-08T21:54:12,469 ~~~~~~~~~~~^^ 2025-09-08T21:54:12,469 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T21:54:12,469 self.run_command(cmd_name) 2025-09-08T21:54:12,469 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T21:54:12,469 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T21:54:12,469 self.distribution.run_command(command) 2025-09-08T21:54:12,469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,470 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:54:12,470 super().run_command(command) 2025-09-08T21:54:12,470 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:54:12,470 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:54:12,470 cmd_obj.run() 2025-09-08T21:54:12,470 ~~~~~~~~~~~^^ 2025-09-08T21:54:12,470 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T21:54:12,470 self.build_extensions() 2025-09-08T21:54:12,471 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:54:12,471 File "/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py", line 386, in build_extensions 2025-09-08T21:54:12,471 build_ext.build_extensions(self) 2025-09-08T21:54:12,471 ~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T21:54:12,471 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T21:54:12,471 self._build_extensions_serial() 2025-09-08T21:54:12,471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:54:12,472 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T21:54:12,472 self.build_extension(ext) 2025-09-08T21:54:12,472 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T21:54:12,472 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T21:54:12,472 new_ext = cythonize( 2025-09-08T21:54:12,472 ~~~~~~~~~^ 2025-09-08T21:54:12,472 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T21:54:12,473 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:54:12,473 )[0] 2025-09-08T21:54:12,473 ^ 2025-09-08T21:54:12,473 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T21:54:12,473 cythonize_one(*args) 2025-09-08T21:54:12,473 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T21:54:12,473 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T21:54:12,474 raise CompileError(None, pyx_file) 2025-09-08T21:54:12,474 Cython.Compiler.Errors.CompileError: cadishi/kernel/c_dist.pyx 2025-09-08T21:54:12,747 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T21:54:12,759 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T21:54:12,759 exec(compile('"'"''"'"''"'"' 2025-09-08T21:54:12,759 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:54:12,759 # 2025-09-08T21:54:12,759 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T21:54:12,759 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T21:54:12,759 # - It provides a clear error message when setuptools is not installed. 2025-09-08T21:54:12,759 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T21:54:12,759 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T21:54:12,759 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T21:54:12,759 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T21:54:12,759 import os, sys, tokenize, traceback 2025-09-08T21:54:12,759 2025-09-08T21:54:12,759 try: 2025-09-08T21:54:12,759 import setuptools 2025-09-08T21:54:12,759 except ImportError: 2025-09-08T21:54:12,759 print( 2025-09-08T21:54:12,759 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T21:54:12,759 "the build environment with exception:", 2025-09-08T21:54:12,759 file=sys.stderr, 2025-09-08T21:54:12,759 ) 2025-09-08T21:54:12,759 traceback.print_exc() 2025-09-08T21:54:12,759 sys.exit(1) 2025-09-08T21:54:12,759 2025-09-08T21:54:12,759 __file__ = %r 2025-09-08T21:54:12,759 sys.argv[0] = __file__ 2025-09-08T21:54:12,759 2025-09-08T21:54:12,759 if os.path.exists(__file__): 2025-09-08T21:54:12,759 filename = __file__ 2025-09-08T21:54:12,759 with tokenize.open(__file__) as f: 2025-09-08T21:54:12,759 setup_py_code = f.read() 2025-09-08T21:54:12,759 else: 2025-09-08T21:54:12,759 filename = "" 2025-09-08T21:54:12,759 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T21:54:12,759 2025-09-08T21:54:12,759 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:54:12,759 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-0cp5usnv[/] 2025-09-08T21:54:12,759 [bold magenta]cwd[/]: /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/ 2025-09-08T21:54:12,759 Building wheel for cadishi (setup.py): finished with status 'error' 2025-09-08T21:54:12,760 ERROR: Failed building wheel for cadishi 2025-09-08T21:54:12,761 Running setup.py clean for cadishi 2025-09-08T21:54:12,761 Running command python setup.py clean 2025-09-08T21:54:13,279 /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py:486: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:54:13,280 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:54:13,523 ### Cadishi 1.1.2 setup configuration 2025-09-08T21:54:13,523 debug : False 2025-09-08T21:54:13,523 openmp : True 2025-09-08T21:54:13,523 gcc_native : False 2025-09-08T21:54:13,523 cuda : True 2025-09-08T21:54:13,523 safe_cuda_flags : False 2025-09-08T21:54:13,524 ### 2025-09-08T21:54:13,524 CUDA was _not_ detected 2025-09-08T21:54:13,524 Build using the GCC compiler 2025-09-08T21:54:13,537 Skipping cudh build 2025-09-08T21:54:14,079 usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] 2025-09-08T21:54:14,079 or: setup.py --help [cmd1 cmd2 ...] 2025-09-08T21:54:14,079 or: setup.py --help-commands 2025-09-08T21:54:14,079 or: setup.py cmd --help 2025-09-08T21:54:14,080 error: option --all not recognized 2025-09-08T21:54:14,215 ERROR: python setup.py clean exited with 1 2025-09-08T21:54:14,220 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T21:54:14,220 exec(compile('"'"''"'"''"'"' 2025-09-08T21:54:14,220 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:54:14,220 # 2025-09-08T21:54:14,220 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T21:54:14,220 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T21:54:14,220 # - It provides a clear error message when setuptools is not installed. 2025-09-08T21:54:14,220 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T21:54:14,220 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T21:54:14,220 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T21:54:14,220 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T21:54:14,220 import os, sys, tokenize, traceback 2025-09-08T21:54:14,220 2025-09-08T21:54:14,220 try: 2025-09-08T21:54:14,220 import setuptools 2025-09-08T21:54:14,220 except ImportError: 2025-09-08T21:54:14,220 print( 2025-09-08T21:54:14,220 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T21:54:14,220 "the build environment with exception:", 2025-09-08T21:54:14,220 file=sys.stderr, 2025-09-08T21:54:14,220 ) 2025-09-08T21:54:14,220 traceback.print_exc() 2025-09-08T21:54:14,220 sys.exit(1) 2025-09-08T21:54:14,220 2025-09-08T21:54:14,220 __file__ = %r 2025-09-08T21:54:14,220 sys.argv[0] = __file__ 2025-09-08T21:54:14,220 2025-09-08T21:54:14,220 if os.path.exists(__file__): 2025-09-08T21:54:14,220 filename = __file__ 2025-09-08T21:54:14,220 with tokenize.open(__file__) as f: 2025-09-08T21:54:14,220 setup_py_code = f.read() 2025-09-08T21:54:14,220 else: 2025-09-08T21:54:14,220 filename = "" 2025-09-08T21:54:14,220 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T21:54:14,220 2025-09-08T21:54:14,220 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:54:14,220 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T21:54:14,220 [bold magenta]cwd[/]: /tmp/pip-wheel-sm0821ll/cadishi_12658b3ccabc4a57a356e8ade4c31cba 2025-09-08T21:54:14,220 ERROR: Failed cleaning build dir for cadishi 2025-09-08T21:54:14,221 Failed to build cadishi 2025-09-08T21:54:14,222 ERROR: Failed to build one or more wheels 2025-09-08T21:54:14,223 Exception information: 2025-09-08T21:54:14,223 Traceback (most recent call last): 2025-09-08T21:54:14,223 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T21:54:14,223 status = _inner_run() 2025-09-08T21:54:14,223 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T21:54:14,223 return self.run(options, args) 2025-09-08T21:54:14,223 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T21:54:14,223 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T21:54:14,223 return func(self, options, args) 2025-09-08T21:54:14,223 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T21:54:14,223 raise CommandError("Failed to build one or more wheels") 2025-09-08T21:54:14,223 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T21:54:14,227 Removed build tracker: '/tmp/pip-build-tracker-e2u60keo'