2025-09-08T21:54:56,907 Created temporary directory: /tmp/pip-build-tracker-d9o91ruv 2025-09-08T21:54:56,908 Initialized build tracking at /tmp/pip-build-tracker-d9o91ruv 2025-09-08T21:54:56,908 Created build tracker: /tmp/pip-build-tracker-d9o91ruv 2025-09-08T21:54:56,908 Entered build tracker: /tmp/pip-build-tracker-d9o91ruv 2025-09-08T21:54:56,908 Created temporary directory: /tmp/pip-wheel-bam7geub 2025-09-08T21:54:56,911 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1k14tk0 2025-09-08T21:54:56,971 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T21:54:56,973 2 location(s) to search for versions of cadishi: 2025-09-08T21:54:56,973 * https://pypi.org/simple/cadishi/ 2025-09-08T21:54:56,973 * https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:56,974 Fetching project page and analyzing links: https://pypi.org/simple/cadishi/ 2025-09-08T21:54:56,974 Getting page https://pypi.org/simple/cadishi/ 2025-09-08T21:54:56,975 Found index url https://pypi.org/simple/ 2025-09-08T21:54:57,045 Fetched page https://pypi.org/simple/cadishi/ as application/vnd.pypi.simple.v1+json 2025-09-08T21:54:57,046 Found link https://files.pythonhosted.org/packages/13/ad/054c2db4123903752e1f40791daeceec85a8ff2b0aa651a9282eef41b699/cadishi-1.1.0.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.0 2025-09-08T21:54:57,046 Found link https://files.pythonhosted.org/packages/6c/33/9b3a9db62bb89a8e59a842258318cb55911de1afd21272d6ed711eacbd11/cadishi-1.1.1.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.1 2025-09-08T21:54:57,046 Found link https://files.pythonhosted.org/packages/30/03/ef160bfd62658c17fdd67129d37d5ecf9c688488775ffe2ca2433a03b6e8/cadishi-1.1.2.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.2 2025-09-08T21:54:57,047 Found link https://files.pythonhosted.org/packages/59/99/836f833fb73a0ac7e5d0b48943fafabcae3129951820dedf3bb26c26083b/cadishi-1.1.3.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.3 2025-09-08T21:54:57,047 Found link https://files.pythonhosted.org/packages/4c/28/12600d1112a9b53ef9d786b71e7c1a374f1494907160c16d73d5b81079a9/cadishi-1.1.4.tar.gz (from https://pypi.org/simple/cadishi/), version: 1.1.4 2025-09-08T21:54:57,047 Fetching project page and analyzing links: https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:57,047 Getting page https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:57,048 Found index url https://www.piwheels.org/simple/ 2025-09-08T21:54:57,153 Fetched page https://www.piwheels.org/simple/cadishi/ as text/html 2025-09-08T21:54:57,159 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp35-cp35m-linux_armv6l.whl#sha256=a960c1d5dc9d53a88ef77ef9877ca144b51c191e9a99207f8f49afeb533c21d6 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,159 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp35-cp35m-linux_armv7l.whl#sha256=a960c1d5dc9d53a88ef77ef9877ca144b51c191e9a99207f8f49afeb533c21d6 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,159 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=fd52fcc5a7e0eb0b84b3cb67f7f117587b98930d69282e7368504a734c0360f8 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=fd52fcc5a7e0eb0b84b3cb67f7f117587b98930d69282e7368504a734c0360f8 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=e970238dd66cff4098d3182847f88438372d2a143c7b335b8f9cd0da46a2ccc9 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=e970238dd66cff4098d3182847f88438372d2a143c7b335b8f9cd0da46a2ccc9 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp35-cp35m-linux_armv6l.whl#sha256=83253493ba1a00ec427109b4cb1d63157ffd95ebca6160a30c9820a2a9127b08 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp35-cp35m-linux_armv7l.whl#sha256=83253493ba1a00ec427109b4cb1d63157ffd95ebca6160a30c9820a2a9127b08 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=5533912a29b7f71487f1191e7840337dc2a2da7633ac3b57e760fe07954e8666 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,160 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=5533912a29b7f71487f1191e7840337dc2a2da7633ac3b57e760fe07954e8666 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0287bb5f640abd19dacf8000323ea53958591fe7f0accd57d4d23835de5a9247 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0287bb5f640abd19dacf8000323ea53958591fe7f0accd57d4d23835de5a9247 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=f90df9da68beb269af6592a6a4df0eec3f6c05b61d1a418d1615671577d6f45e (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=f90df9da68beb269af6592a6a4df0eec3f6c05b61d1a418d1615671577d6f45e (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp35-cp35m-linux_armv6l.whl#sha256=67a6b10794d32032611058d17824ec52f1b6f281fb5aa85dfd017c531a046368 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp35-cp35m-linux_armv7l.whl#sha256=67a6b10794d32032611058d17824ec52f1b6f281fb5aa85dfd017c531a046368 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,161 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=75f4753854471f871b2d190b88031c6cc3a2f0ba1d9d21f07eb712f5ba5d84ed (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=75f4753854471f871b2d190b88031c6cc3a2f0ba1d9d21f07eb712f5ba5d84ed (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp35-cp35m-linux_armv6l.whl#sha256=efaa91f3b6e77b806c154f8daddb7f3972cd9b8eff3a775da512ba086d9858c0 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp35-cp35m-linux_armv7l.whl#sha256=efaa91f3b6e77b806c154f8daddb7f3972cd9b8eff3a775da512ba086d9858c0 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=2e04241fbac97451ecd6c6eed2714875d41cafd0d437ece001b5352e4952cd3c (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=2e04241fbac97451ecd6c6eed2714875d41cafd0d437ece001b5352e4952cd3c (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=3912a8fd57beda3601f2bd547afa61fdd025156fc6048dbbb548f0839c99a50d (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=3912a8fd57beda3601f2bd547afa61fdd025156fc6048dbbb548f0839c99a50d (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,162 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=382832398d74a106a3813486e609b3fe7e74b250c5fa1d142c2b23c3eb45a82a (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=382832398d74a106a3813486e609b3fe7e74b250c5fa1d142c2b23c3eb45a82a (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=0eb0d94f6b3c81e884aec95ec3e966a6cc870e322fbf39e4551ad6cf472a1416 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=0eb0d94f6b3c81e884aec95ec3e966a6cc870e322fbf39e4551ad6cf472a1416 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=c2563c1673a2e2c3fb9c9675fdc8206197c7799d2734b859cfe2e7ed12666593 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: No binaries permitted for cadishi: https://archive1.piwheels.org/simple/cadishi/cadishi-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=c2563c1673a2e2c3fb9c9675fdc8206197c7799d2734b859cfe2e7ed12666593 (from https://www.piwheels.org/simple/cadishi/) 2025-09-08T21:54:57,163 Skipping link: not a file: https://www.piwheels.org/simple/cadishi/ 2025-09-08T21:54:57,163 Skipping link: not a file: https://pypi.org/simple/cadishi/ 2025-09-08T21:54:57,187 Given no hashes to check 1 links for project 'cadishi': discarding no candidates 2025-09-08T21:54:57,188 Collecting cadishi==1.1.3 2025-09-08T21:54:57,189 Created temporary directory: /tmp/pip-unpack-cc9cxis4 2025-09-08T21:54:57,329 Downloading cadishi-1.1.3.tar.gz (4.3 MB) 2025-09-08T21:54:58,351 Added cadishi==1.1.3 from https://files.pythonhosted.org/packages/59/99/836f833fb73a0ac7e5d0b48943fafabcae3129951820dedf3bb26c26083b/cadishi-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-d9o91ruv' 2025-09-08T21:54:58,352 Running setup.py (path:/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py) egg_info for package cadishi 2025-09-08T21:54:58,352 Created temporary directory: /tmp/pip-pip-egg-info-rvj97mzf 2025-09-08T21:54:58,352 Preparing metadata (setup.py): started 2025-09-08T21:54:58,353 Running command python setup.py egg_info 2025-09-08T21:54:58,875 /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py:500: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:54:58,875 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:54:59,790 ### Cadishi 1.1.3 setup configuration 2025-09-08T21:54:59,790 debug : False 2025-09-08T21:54:59,790 openmp : True 2025-09-08T21:54:59,790 gcc_native : False 2025-09-08T21:54:59,790 cuda : True 2025-09-08T21:54:59,790 safe_cuda_flags : False 2025-09-08T21:54:59,790 ### 2025-09-08T21:54:59,791 CUDA was _not_ detected 2025-09-08T21:54:59,791 Build using GCC or a generic compiler ... 2025-09-08T21:54:59,791 GCC flags: -g -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11 -O3 -ffast-math -funroll-loops -mtune=native -fopenmp -lgomp -fopt-info -Wno-unknown-pragmas 2025-09-08T21:54:59,791 Skipping cudh build 2025-09-08T21:54:59,791 running egg_info 2025-09-08T21:54:59,865 creating /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info 2025-09-08T21:54:59,865 writing /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/PKG-INFO 2025-09-08T21:54:59,866 writing dependency_links to /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/dependency_links.txt 2025-09-08T21:54:59,867 writing entry points to /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/entry_points.txt 2025-09-08T21:54:59,868 writing requirements to /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/requires.txt 2025-09-08T21:54:59,868 writing top-level names to /tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/top_level.txt 2025-09-08T21:54:59,868 writing manifest file '/tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:55:00,176 reading manifest file '/tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:55:00,177 reading manifest template 'MANIFEST.in' 2025-09-08T21:55:00,182 warning: no files found matching 'aux/*.sh' 2025-09-08T21:55:00,183 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-09-08T21:55:00,183 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T21:55:00,184 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T21:55:00,184 adding license file 'LICENSE.txt' 2025-09-08T21:55:00,184 adding license file 'AUTHORS.rst' 2025-09-08T21:55:00,190 writing manifest file '/tmp/pip-pip-egg-info-rvj97mzf/cadishi.egg-info/SOURCES.txt' 2025-09-08T21:55:00,327 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T21:55:00,332 Source in /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f has version 1.1.3, which satisfies requirement cadishi==1.1.3 from https://files.pythonhosted.org/packages/59/99/836f833fb73a0ac7e5d0b48943fafabcae3129951820dedf3bb26c26083b/cadishi-1.1.3.tar.gz 2025-09-08T21:55:00,333 Removed cadishi==1.1.3 from https://files.pythonhosted.org/packages/59/99/836f833fb73a0ac7e5d0b48943fafabcae3129951820dedf3bb26c26083b/cadishi-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-d9o91ruv' 2025-09-08T21:55:00,337 Created temporary directory: /tmp/pip-unpack-y7_3q_yv 2025-09-08T21:55:00,338 Created temporary directory: /tmp/pip-unpack-8d73wiq3 2025-09-08T21:55:00,338 Building wheels for collected packages: cadishi 2025-09-08T21:55:00,339 Created temporary directory: /tmp/pip-wheel-qbro8a9q 2025-09-08T21:55:00,340 DEPRECATION: Building 'cadishi' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cadishi'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T21:55:00,341 Building wheel for cadishi (setup.py): started 2025-09-08T21:55:00,342 Destination directory: /tmp/pip-wheel-qbro8a9q 2025-09-08T21:55:00,342 Running command python setup.py bdist_wheel 2025-09-08T21:55:00,866 /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py:500: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:55:00,867 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:55:01,122 ### Cadishi 1.1.3 setup configuration 2025-09-08T21:55:01,122 debug : False 2025-09-08T21:55:01,122 openmp : True 2025-09-08T21:55:01,122 gcc_native : False 2025-09-08T21:55:01,122 cuda : True 2025-09-08T21:55:01,122 safe_cuda_flags : False 2025-09-08T21:55:01,122 ### 2025-09-08T21:55:01,123 CUDA was _not_ detected 2025-09-08T21:55:01,123 Build using GCC or a generic compiler ... 2025-09-08T21:55:01,135 GCC flags: -g -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11 -O3 -ffast-math -funroll-loops -mtune=native -fopenmp -lgomp -fopt-info -Wno-unknown-pragmas 2025-09-08T21:55:01,135 Skipping cudh build 2025-09-08T21:55:01,677 running bdist_wheel 2025-09-08T21:55:01,972 running build 2025-09-08T21:55:01,972 running build_py 2025-09-08T21:55:02,050 creating build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,050 copying cadishi/worker.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,051 copying cadishi/version.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,052 copying cadishi/util.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,052 copying cadishi/pbc.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,053 copying cadishi/h5pickle.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,053 copying cadishi/githash.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,054 copying cadishi/dictfs.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,054 copying cadishi/dict_util.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,055 copying cadishi/base.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,056 copying cadishi/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi 2025-09-08T21:55:02,056 creating build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,057 copying cadishi/io/pickel.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,057 copying cadishi/io/md.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,058 copying cadishi/io/hdf5.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,058 copying cadishi/io/dummy.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,059 copying cadishi/io/ascii.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,059 copying cadishi/io/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/io 2025-09-08T21:55:02,060 creating build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,060 copying cadishi/kernel/pydh.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,061 copying cadishi/kernel/dist.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,061 copying cadishi/kernel/cudh.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,062 copying cadishi/kernel/common.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,062 copying cadishi/kernel/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/kernel 2025-09-08T21:55:02,063 creating build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,064 copying cadishi/tests/test_util_generate_random.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,064 copying cadishi/tests/test_pydh_dist.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,065 copying cadishi/tests/test_pydh_cudh.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,065 copying cadishi/tests/test_h5pickle.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,066 copying cadishi/tests/test_dictfs.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,066 copying cadishi/tests/test_dict_util.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,067 copying cadishi/tests/test_base_container.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,067 copying cadishi/tests/perf_kernel.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,068 copying cadishi/tests/minimal_driver.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,068 copying cadishi/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/tests 2025-09-08T21:55:02,069 creating build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,069 copying cadishi/exe/unpack.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,070 copying cadishi/exe/random_trajectory.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,070 copying cadishi/exe/merge.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,071 copying cadishi/exe/histograms_legacy.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,072 copying cadishi/exe/histograms_example.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,072 copying cadishi/exe/histograms.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,073 copying cadishi/exe/cli.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,073 copying cadishi/exe/check_parameter_file.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,074 copying cadishi/exe/__init__.py -> build/lib.linux-armv7l-cpython-313/cadishi/exe 2025-09-08T21:55:02,076 creating build/lib.linux-armv7l-cpython-313/cadishi/tests/data 2025-09-08T21:55:02,077 copying cadishi/tests/data/trajectory.h5 -> build/lib.linux-armv7l-cpython-313/cadishi/tests/data 2025-09-08T21:55:02,094 creating build/lib.linux-armv7l-cpython-313/cadishi/data 2025-09-08T21:55:02,094 copying cadishi/data/histograms_template.yaml -> build/lib.linux-armv7l-cpython-313/cadishi/data 2025-09-08T21:55:02,096 running build_ext 2025-09-08T21:55:02,544 Compiling cadishi/kernel/c_dist.pyx because it changed. 2025-09-08T21:55:02,544 [1/1] Cythonizing cadishi/kernel/c_dist.pyx 2025-09-08T21:55:03,369 Error compiling Cython file: 2025-09-08T21:55:03,370 ------------------------------------------------------------ 2025-09-08T21:55:03,370 ... 2025-09-08T21:55:03,370 d+=tmp*tmp 2025-09-08T21:55:03,370 d=sqrt(d) 2025-09-08T21:55:03,370 #d=sqrt(((r[i] - r[j])**2).sum()) 2025-09-08T21:55:03,370 rIndex=int(d/rmax*nbins) 2025-09-08T21:55:03,370 if rIndex>=nbins: 2025-09-08T21:55:03,370 print "\n rIndex>=nbins\n" 2025-09-08T21:55:03,371 ^ 2025-09-08T21:55:03,371 ------------------------------------------------------------ 2025-09-08T21:55:03,371 cadishi/kernel/c_dist.pyx:36:22: Syntax error in simple statement list 2025-09-08T21:55:03,380 Traceback (most recent call last): 2025-09-08T21:55:03,389 File "", line 2, in 2025-09-08T21:55:03,389 exec(compile(''' 2025-09-08T21:55:03,390 ~~~~^^^^^^^^^^^^ 2025-09-08T21:55:03,390 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:55:03,390 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,390 ...<32 lines>... 2025-09-08T21:55:03,390 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:55:03,390 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,390 ''' % ('/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py',), "", "exec")) 2025-09-08T21:55:03,390 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,391 File "", line 35, in 2025-09-08T21:55:03,391 File "/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py", line 544, in 2025-09-08T21:55:03,391 setup( 2025-09-08T21:55:03,391 ~~~~~^ 2025-09-08T21:55:03,392 name="cadishi", 2025-09-08T21:55:03,392 ^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,392 ...<27 lines>... 2025-09-08T21:55:03,392 scripts=glob('aux/*.py')+glob('aux/*.bash'), 2025-09-08T21:55:03,392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,392 zip_safe=False) 2025-09-08T21:55:03,392 ^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,393 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T21:55:03,393 return distutils.core.setup(**attrs) 2025-09-08T21:55:03,393 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,393 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T21:55:03,393 return run_commands(dist) 2025-09-08T21:55:03,393 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T21:55:03,393 dist.run_commands() 2025-09-08T21:55:03,393 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:55:03,394 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T21:55:03,394 self.run_command(cmd) 2025-09-08T21:55:03,394 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T21:55:03,394 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:55:03,394 super().run_command(command) 2025-09-08T21:55:03,394 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,394 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:55:03,394 cmd_obj.run() 2025-09-08T21:55:03,394 ~~~~~~~~~~~^^ 2025-09-08T21:55:03,395 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T21:55:03,395 self.run_command("build") 2025-09-08T21:55:03,395 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,395 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T21:55:03,395 self.distribution.run_command(command) 2025-09-08T21:55:03,395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,395 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:55:03,395 super().run_command(command) 2025-09-08T21:55:03,396 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,396 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:55:03,396 cmd_obj.run() 2025-09-08T21:55:03,396 ~~~~~~~~~~~^^ 2025-09-08T21:55:03,396 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T21:55:03,396 self.run_command(cmd_name) 2025-09-08T21:55:03,396 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T21:55:03,396 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T21:55:03,396 self.distribution.run_command(command) 2025-09-08T21:55:03,397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,397 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T21:55:03,397 super().run_command(command) 2025-09-08T21:55:03,397 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T21:55:03,397 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T21:55:03,397 cmd_obj.run() 2025-09-08T21:55:03,397 ~~~~~~~~~~~^^ 2025-09-08T21:55:03,397 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T21:55:03,397 self.build_extensions() 2025-09-08T21:55:03,398 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:55:03,398 File "/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py", line 396, in build_extensions 2025-09-08T21:55:03,398 build_ext.build_extensions(self) 2025-09-08T21:55:03,398 ~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T21:55:03,398 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T21:55:03,398 self._build_extensions_serial() 2025-09-08T21:55:03,398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T21:55:03,398 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T21:55:03,399 self.build_extension(ext) 2025-09-08T21:55:03,399 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T21:55:03,399 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T21:55:03,399 new_ext = cythonize( 2025-09-08T21:55:03,399 ~~~~~~~~~^ 2025-09-08T21:55:03,399 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T21:55:03,399 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T21:55:03,399 )[0] 2025-09-08T21:55:03,400 ^ 2025-09-08T21:55:03,400 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T21:55:03,400 cythonize_one(*args) 2025-09-08T21:55:03,400 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T21:55:03,400 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T21:55:03,400 raise CompileError(None, pyx_file) 2025-09-08T21:55:03,400 Cython.Compiler.Errors.CompileError: cadishi/kernel/c_dist.pyx 2025-09-08T21:55:03,677 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T21:55:03,689 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T21:55:03,689 exec(compile('"'"''"'"''"'"' 2025-09-08T21:55:03,689 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:55:03,689 # 2025-09-08T21:55:03,689 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T21:55:03,689 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T21:55:03,689 # - It provides a clear error message when setuptools is not installed. 2025-09-08T21:55:03,689 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T21:55:03,689 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T21:55:03,689 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T21:55:03,689 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T21:55:03,689 import os, sys, tokenize, traceback 2025-09-08T21:55:03,689 2025-09-08T21:55:03,689 try: 2025-09-08T21:55:03,689 import setuptools 2025-09-08T21:55:03,689 except ImportError: 2025-09-08T21:55:03,689 print( 2025-09-08T21:55:03,689 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T21:55:03,689 "the build environment with exception:", 2025-09-08T21:55:03,689 file=sys.stderr, 2025-09-08T21:55:03,689 ) 2025-09-08T21:55:03,689 traceback.print_exc() 2025-09-08T21:55:03,689 sys.exit(1) 2025-09-08T21:55:03,689 2025-09-08T21:55:03,689 __file__ = %r 2025-09-08T21:55:03,689 sys.argv[0] = __file__ 2025-09-08T21:55:03,689 2025-09-08T21:55:03,689 if os.path.exists(__file__): 2025-09-08T21:55:03,689 filename = __file__ 2025-09-08T21:55:03,689 with tokenize.open(__file__) as f: 2025-09-08T21:55:03,689 setup_py_code = f.read() 2025-09-08T21:55:03,689 else: 2025-09-08T21:55:03,689 filename = "" 2025-09-08T21:55:03,689 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T21:55:03,689 2025-09-08T21:55:03,689 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:55:03,689 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-qbro8a9q[/] 2025-09-08T21:55:03,689 [bold magenta]cwd[/]: /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/ 2025-09-08T21:55:03,689 Building wheel for cadishi (setup.py): finished with status 'error' 2025-09-08T21:55:03,690 ERROR: Failed building wheel for cadishi 2025-09-08T21:55:03,690 Running setup.py clean for cadishi 2025-09-08T21:55:03,691 Running command python setup.py clean 2025-09-08T21:55:04,209 /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py:500: SyntaxWarning: invalid escape sequence '\-' 2025-09-08T21:55:04,210 CADISHI \-- CAlculation of DIStance HIstograms \-- is a software package 2025-09-08T21:55:04,452 ### Cadishi 1.1.3 setup configuration 2025-09-08T21:55:04,452 debug : False 2025-09-08T21:55:04,452 openmp : True 2025-09-08T21:55:04,452 gcc_native : False 2025-09-08T21:55:04,452 cuda : True 2025-09-08T21:55:04,452 safe_cuda_flags : False 2025-09-08T21:55:04,452 ### 2025-09-08T21:55:04,452 CUDA was _not_ detected 2025-09-08T21:55:04,453 Build using GCC or a generic compiler ... 2025-09-08T21:55:04,466 GCC flags: -g -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11 -O3 -ffast-math -funroll-loops -mtune=native -fopenmp -lgomp -fopt-info -Wno-unknown-pragmas 2025-09-08T21:55:04,466 Skipping cudh build 2025-09-08T21:55:05,010 usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] 2025-09-08T21:55:05,010 or: setup.py --help [cmd1 cmd2 ...] 2025-09-08T21:55:05,011 or: setup.py --help-commands 2025-09-08T21:55:05,011 or: setup.py cmd --help 2025-09-08T21:55:05,011 error: option --all not recognized 2025-09-08T21:55:05,146 ERROR: python setup.py clean exited with 1 2025-09-08T21:55:05,151 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T21:55:05,151 exec(compile('"'"''"'"''"'"' 2025-09-08T21:55:05,151 # This is -- a caller that pip uses to run setup.py 2025-09-08T21:55:05,151 # 2025-09-08T21:55:05,151 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T21:55:05,151 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T21:55:05,151 # - It provides a clear error message when setuptools is not installed. 2025-09-08T21:55:05,151 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T21:55:05,151 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T21:55:05,151 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T21:55:05,151 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T21:55:05,151 import os, sys, tokenize, traceback 2025-09-08T21:55:05,151 2025-09-08T21:55:05,151 try: 2025-09-08T21:55:05,151 import setuptools 2025-09-08T21:55:05,151 except ImportError: 2025-09-08T21:55:05,151 print( 2025-09-08T21:55:05,151 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T21:55:05,151 "the build environment with exception:", 2025-09-08T21:55:05,151 file=sys.stderr, 2025-09-08T21:55:05,151 ) 2025-09-08T21:55:05,151 traceback.print_exc() 2025-09-08T21:55:05,151 sys.exit(1) 2025-09-08T21:55:05,151 2025-09-08T21:55:05,151 __file__ = %r 2025-09-08T21:55:05,151 sys.argv[0] = __file__ 2025-09-08T21:55:05,151 2025-09-08T21:55:05,151 if os.path.exists(__file__): 2025-09-08T21:55:05,151 filename = __file__ 2025-09-08T21:55:05,151 with tokenize.open(__file__) as f: 2025-09-08T21:55:05,151 setup_py_code = f.read() 2025-09-08T21:55:05,151 else: 2025-09-08T21:55:05,151 filename = "" 2025-09-08T21:55:05,151 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T21:55:05,151 2025-09-08T21:55:05,151 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T21:55:05,151 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T21:55:05,151 [bold magenta]cwd[/]: /tmp/pip-wheel-bam7geub/cadishi_672fc91bd61f4fe78ef8d30200517e1f 2025-09-08T21:55:05,152 ERROR: Failed cleaning build dir for cadishi 2025-09-08T21:55:05,153 Failed to build cadishi 2025-09-08T21:55:05,153 ERROR: Failed to build one or more wheels 2025-09-08T21:55:05,154 Exception information: 2025-09-08T21:55:05,154 Traceback (most recent call last): 2025-09-08T21:55:05,154 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T21:55:05,154 status = _inner_run() 2025-09-08T21:55:05,154 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T21:55:05,154 return self.run(options, args) 2025-09-08T21:55:05,154 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T21:55:05,154 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T21:55:05,154 return func(self, options, args) 2025-09-08T21:55:05,154 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T21:55:05,154 raise CommandError("Failed to build one or more wheels") 2025-09-08T21:55:05,154 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T21:55:05,159 Removed build tracker: '/tmp/pip-build-tracker-d9o91ruv'