2025-09-08T22:16:03,877 Created temporary directory: /tmp/pip-build-tracker-7r541k0r 2025-09-08T22:16:03,878 Initialized build tracking at /tmp/pip-build-tracker-7r541k0r 2025-09-08T22:16:03,878 Created build tracker: /tmp/pip-build-tracker-7r541k0r 2025-09-08T22:16:03,878 Entered build tracker: /tmp/pip-build-tracker-7r541k0r 2025-09-08T22:16:03,878 Created temporary directory: /tmp/pip-wheel-pz_642vf 2025-09-08T22:16:03,881 Created temporary directory: /tmp/pip-ephem-wheel-cache-u23cgfen 2025-09-08T22:16:03,942 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T22:16:03,945 2 location(s) to search for versions of lightdock: 2025-09-08T22:16:03,945 * https://pypi.org/simple/lightdock/ 2025-09-08T22:16:03,945 * https://www.piwheels.org/simple/lightdock/ 2025-09-08T22:16:03,945 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-08T22:16:03,945 Getting page https://pypi.org/simple/lightdock/ 2025-09-08T22:16:03,947 Found index url https://pypi.org/simple/ 2025-09-08T22:16:04,018 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-08T22:16:04,023 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,024 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-08T22:16:04,025 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,025 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-08T22:16:04,025 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,025 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-08T22:16:04,025 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,161 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,161 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,161 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,161 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:16:04,162 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-08T22:16:04,163 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-08T22:16:04,188 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-08T22:16:04,189 Collecting lightdock==0.8.0a2 2025-09-08T22:16:04,190 Created temporary directory: /tmp/pip-unpack-sl_jf4ub 2025-09-08T22:16:04,434 Downloading lightdock-0.8.0a2.tar.gz (32.5 MB) 2025-09-08T22:16:12,905 Added lightdock==0.8.0a2 from https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz to build tracker '/tmp/pip-build-tracker-7r541k0r' 2025-09-08T22:16:12,906 Running setup.py (path:/tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/setup.py) egg_info for package lightdock 2025-09-08T22:16:12,906 Created temporary directory: /tmp/pip-pip-egg-info-nc9rnalp 2025-09-08T22:16:12,906 Preparing metadata (setup.py): started 2025-09-08T22:16:12,907 Running command python setup.py egg_info 2025-09-08T22:16:13,452 /tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:16:13,452 !! 2025-09-08T22:16:13,453 ******************************************************************************** 2025-09-08T22:16:13,453 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:16:13,453 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:16:13,453 calls to avoid build errors in the future. 2025-09-08T22:16:13,453 ******************************************************************************** 2025-09-08T22:16:13,453 !! 2025-09-08T22:16:13,453 from setuptools.command.test import test as TestCommand 2025-09-08T22:16:13,860 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:16:13,860 !! 2025-09-08T22:16:13,861 ******************************************************************************** 2025-09-08T22:16:13,861 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:16:13,861 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:16:13,861 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:16:13,861 or your builds will no longer be supported. 2025-09-08T22:16:13,861 ******************************************************************************** 2025-09-08T22:16:13,861 !! 2025-09-08T22:16:13,861 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:16:16,936 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:16:16,936 !! 2025-09-08T22:16:16,936 ******************************************************************************** 2025-09-08T22:16:16,936 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:16:16,937 License :: Free For Educational Use 2025-09-08T22:16:16,937 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:16:16,937 ******************************************************************************** 2025-09-08T22:16:16,937 !! 2025-09-08T22:16:16,937 self._finalize_license_expression() 2025-09-08T22:16:17,012 running egg_info 2025-09-08T22:16:17,087 creating /tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info 2025-09-08T22:16:17,088 writing /tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/PKG-INFO 2025-09-08T22:16:17,089 writing dependency_links to /tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/dependency_links.txt 2025-09-08T22:16:17,090 writing requirements to /tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/requires.txt 2025-09-08T22:16:17,091 writing top-level names to /tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/top_level.txt 2025-09-08T22:16:17,091 writing manifest file '/tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:16:17,953 reading manifest file '/tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:16:17,954 reading manifest template 'MANIFEST.in' 2025-09-08T22:16:18,027 adding license file 'LICENSE' 2025-09-08T22:16:18,064 writing manifest file '/tmp/pip-pip-egg-info-nc9rnalp/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:16:18,201 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T22:16:18,206 Source in /tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0 has version 0.8.0a2, which satisfies requirement lightdock==0.8.0a2 from https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz 2025-09-08T22:16:18,206 Removed lightdock==0.8.0a2 from https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz from build tracker '/tmp/pip-build-tracker-7r541k0r' 2025-09-08T22:16:18,213 Created temporary directory: /tmp/pip-unpack-b36kmjnh 2025-09-08T22:16:18,213 Created temporary directory: /tmp/pip-unpack-sf802yd9 2025-09-08T22:16:18,213 Building wheels for collected packages: lightdock 2025-09-08T22:16:18,215 Created temporary directory: /tmp/pip-wheel-e1xl8a5n 2025-09-08T22:16:18,215 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T22:16:18,216 Building wheel for lightdock (setup.py): started 2025-09-08T22:16:18,217 Destination directory: /tmp/pip-wheel-e1xl8a5n 2025-09-08T22:16:18,217 Running command python setup.py bdist_wheel 2025-09-08T22:16:18,733 /tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:16:18,733 !! 2025-09-08T22:16:18,733 ******************************************************************************** 2025-09-08T22:16:18,733 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:16:18,733 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:16:18,733 calls to avoid build errors in the future. 2025-09-08T22:16:18,733 ******************************************************************************** 2025-09-08T22:16:18,734 !! 2025-09-08T22:16:18,734 from setuptools.command.test import test as TestCommand 2025-09-08T22:16:19,063 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:16:19,063 !! 2025-09-08T22:16:19,063 ******************************************************************************** 2025-09-08T22:16:19,063 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:16:19,063 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:16:19,064 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:16:19,064 or your builds will no longer be supported. 2025-09-08T22:16:19,064 ******************************************************************************** 2025-09-08T22:16:19,064 !! 2025-09-08T22:16:19,064 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:16:19,912 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:16:19,913 !! 2025-09-08T22:16:19,913 ******************************************************************************** 2025-09-08T22:16:19,913 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:16:19,913 License :: Free For Educational Use 2025-09-08T22:16:19,913 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:16:19,913 ******************************************************************************** 2025-09-08T22:16:19,913 !! 2025-09-08T22:16:19,913 self._finalize_license_expression() 2025-09-08T22:16:19,915 running bdist_wheel 2025-09-08T22:16:20,288 running build 2025-09-08T22:16:20,289 running build_py 2025-09-08T22:16:20,368 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:16:20,369 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:16:20,370 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:16:20,370 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:16:20,371 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,372 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,373 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,373 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,374 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,375 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,376 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:16:20,377 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T22:16:20,377 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T22:16:20,378 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,379 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,379 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,380 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,381 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,382 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,382 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,383 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,384 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:16:20,385 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:16:20,385 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:16:20,386 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:16:20,387 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:16:20,388 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:16:20,388 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:16:20,389 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:16:20,390 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:16:20,391 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:16:20,391 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:16:20,392 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:16:20,393 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:16:20,393 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:16:20,394 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,395 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,396 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,396 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,397 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,398 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,399 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:16:20,400 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:16:20,400 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:16:20,401 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:16:20,402 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:16:20,402 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:16:20,403 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:16:20,403 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:16:20,404 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:16:20,405 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:16:20,406 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:16:20,406 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:16:20,407 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:16:20,408 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,409 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,409 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,410 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,411 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,411 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,412 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,413 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,414 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:16:20,414 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:16:20,415 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:16:20,416 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:16:20,416 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:16:20,417 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:16:20,418 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:16:20,419 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,419 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,420 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,421 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,422 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,422 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,423 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:16:20,424 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,425 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,425 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,426 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,427 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,428 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,428 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,429 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,430 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,431 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,431 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:16:20,432 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:16:20,433 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:16:20,433 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:16:20,434 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,435 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,436 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,436 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,437 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,438 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:16:20,439 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:16:20,439 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:16:20,440 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:16:20,441 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,441 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,442 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,443 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,444 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,444 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,445 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,446 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:16:20,447 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,447 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,448 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,449 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,449 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,450 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,451 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,452 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,452 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,453 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,454 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:16:20,455 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:16:20,455 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:16:20,456 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:16:20,457 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,458 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,458 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,459 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,460 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,460 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,461 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,462 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,463 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,463 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,464 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,465 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,465 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,466 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:16:20,467 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,468 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,468 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,469 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,470 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,471 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,471 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,472 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,473 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,474 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:16:20,475 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,475 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,476 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,477 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,477 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,478 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,479 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,479 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,480 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,481 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,481 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,482 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:16:20,483 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:16:20,484 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:16:20,484 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:16:20,485 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:16:20,486 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:16:20,486 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:16:20,487 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:16:20,488 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:16:20,488 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:16:20,489 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:16:20,490 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:16:20,491 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:16:20,491 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:16:20,492 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:16:20,493 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:16:20,494 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:16:20,494 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:16:20,495 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:16:20,496 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:16:20,497 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:16:20,498 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:16:20,499 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:16:20,499 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:16:20,500 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:16:20,501 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:16:20,502 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:16:20,502 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:16:20,503 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:16:20,504 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:16:20,505 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:16:20,506 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:16:20,506 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:16:20,507 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:16:20,508 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:16:20,509 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:16:20,509 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:16:20,510 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T22:16:20,511 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T22:16:20,512 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:16:20,513 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:16:20,513 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:16:20,515 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:16:20,516 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:16:20,516 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:16:20,517 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:16:20,518 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:16:20,519 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:16:20,519 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:16:20,520 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:16:20,521 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:16:20,521 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:16:20,522 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T22:16:20,523 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T22:16:20,524 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:16:20,524 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:16:20,525 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:16:20,526 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:16:20,527 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:16:20,528 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:16:20,528 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:16:20,529 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:16:20,530 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:16:20,530 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:16:20,531 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:16:20,532 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:16:20,532 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:16:20,533 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:16:20,534 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:16:20,535 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:16:20,536 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:16:20,536 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:16:20,537 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:16:20,538 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:16:20,539 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:16:20,540 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:16:20,540 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:16:20,541 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:16:20,542 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:16:20,543 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:16:20,543 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:16:20,544 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:16:20,545 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:16:20,545 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:16:20,546 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:16:20,547 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:16:20,548 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:16:20,548 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:16:20,549 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:16:20,550 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:16:20,550 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:16:20,551 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:16:20,552 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:16:20,553 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:16:20,554 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:16:20,554 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:16:20,555 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:16:20,556 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:20,557 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:20,557 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:20,558 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:16:20,559 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:16:20,560 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:16:20,560 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:16:20,561 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:16:20,562 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:20,562 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:20,563 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:20,564 running egg_info 2025-09-08T22:16:20,639 writing lightdock.egg-info/PKG-INFO 2025-09-08T22:16:20,640 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-08T22:16:20,641 writing requirements to lightdock.egg-info/requires.txt 2025-09-08T22:16:20,642 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-08T22:16:20,746 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T22:16:20,813 reading manifest template 'MANIFEST.in' 2025-09-08T22:16:20,886 adding license file 'LICENSE' 2025-09-08T22:16:20,940 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T22:16:20,943 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-08T22:16:20,943 !! 2025-09-08T22:16:20,943 ******************************************************************************** 2025-09-08T22:16:20,943 ############################ 2025-09-08T22:16:20,943 # Package would be ignored # 2025-09-08T22:16:20,944 ############################ 2025-09-08T22:16:20,944 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-08T22:16:20,944 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,944 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,944 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-08T22:16:20,944 to the `packages` configuration field. 2025-09-08T22:16:20,944 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,944 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,945 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,945 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,945 If you don't want 'lightdock.etc' to be distributed and are 2025-09-08T22:16:20,945 already explicitly excluding 'lightdock.etc' via 2025-09-08T22:16:20,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,945 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,945 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,946 even if it does not contain any `.py` files. 2025-09-08T22:16:20,946 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,946 directory, all directories are treated like packages. 2025-09-08T22:16:20,946 ******************************************************************************** 2025-09-08T22:16:20,946 !! 2025-09-08T22:16:20,946 check.warn(importable) 2025-09-08T22:16:20,948 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,948 !! 2025-09-08T22:16:20,948 ******************************************************************************** 2025-09-08T22:16:20,948 ############################ 2025-09-08T22:16:20,948 # Package would be ignored # 2025-09-08T22:16:20,948 ############################ 2025-09-08T22:16:20,948 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-08T22:16:20,948 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,948 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,949 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-08T22:16:20,949 to the `packages` configuration field. 2025-09-08T22:16:20,949 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,949 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,949 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,949 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,949 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-08T22:16:20,950 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-08T22:16:20,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,950 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,950 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,950 even if it does not contain any `.py` files. 2025-09-08T22:16:20,951 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,951 directory, all directories are treated like packages. 2025-09-08T22:16:20,951 ******************************************************************************** 2025-09-08T22:16:20,951 !! 2025-09-08T22:16:20,951 check.warn(importable) 2025-09-08T22:16:20,952 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,952 !! 2025-09-08T22:16:20,952 ******************************************************************************** 2025-09-08T22:16:20,952 ############################ 2025-09-08T22:16:20,952 # Package would be ignored # 2025-09-08T22:16:20,952 ############################ 2025-09-08T22:16:20,952 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-08T22:16:20,952 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,952 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,953 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-08T22:16:20,953 to the `packages` configuration field. 2025-09-08T22:16:20,953 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,953 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,953 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,953 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,953 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-08T22:16:20,954 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-08T22:16:20,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,954 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,954 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,954 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,954 even if it does not contain any `.py` files. 2025-09-08T22:16:20,955 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,955 directory, all directories are treated like packages. 2025-09-08T22:16:20,955 ******************************************************************************** 2025-09-08T22:16:20,955 !! 2025-09-08T22:16:20,955 check.warn(importable) 2025-09-08T22:16:20,957 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,957 !! 2025-09-08T22:16:20,957 ******************************************************************************** 2025-09-08T22:16:20,957 ############################ 2025-09-08T22:16:20,957 # Package would be ignored # 2025-09-08T22:16:20,957 ############################ 2025-09-08T22:16:20,957 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-08T22:16:20,958 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,958 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,958 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-08T22:16:20,958 to the `packages` configuration field. 2025-09-08T22:16:20,958 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,958 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,958 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,959 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,959 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-08T22:16:20,959 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-08T22:16:20,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,959 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,959 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,960 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,960 even if it does not contain any `.py` files. 2025-09-08T22:16:20,960 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,960 directory, all directories are treated like packages. 2025-09-08T22:16:20,960 ******************************************************************************** 2025-09-08T22:16:20,960 !! 2025-09-08T22:16:20,960 check.warn(importable) 2025-09-08T22:16:20,960 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,961 !! 2025-09-08T22:16:20,961 ******************************************************************************** 2025-09-08T22:16:20,961 ############################ 2025-09-08T22:16:20,961 # Package would be ignored # 2025-09-08T22:16:20,961 ############################ 2025-09-08T22:16:20,961 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-08T22:16:20,961 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,961 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,961 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-08T22:16:20,961 to the `packages` configuration field. 2025-09-08T22:16:20,962 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,962 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,962 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,962 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,962 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,962 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-08T22:16:20,962 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-08T22:16:20,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,963 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,963 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,963 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,963 even if it does not contain any `.py` files. 2025-09-08T22:16:20,963 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,964 directory, all directories are treated like packages. 2025-09-08T22:16:20,964 ******************************************************************************** 2025-09-08T22:16:20,964 !! 2025-09-08T22:16:20,964 check.warn(importable) 2025-09-08T22:16:20,964 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,964 !! 2025-09-08T22:16:20,964 ******************************************************************************** 2025-09-08T22:16:20,964 ############################ 2025-09-08T22:16:20,964 # Package would be ignored # 2025-09-08T22:16:20,965 ############################ 2025-09-08T22:16:20,965 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-08T22:16:20,965 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,965 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,965 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-08T22:16:20,965 to the `packages` configuration field. 2025-09-08T22:16:20,965 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,965 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,966 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,966 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,966 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-08T22:16:20,966 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-08T22:16:20,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,966 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,966 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,967 even if it does not contain any `.py` files. 2025-09-08T22:16:20,967 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,967 directory, all directories are treated like packages. 2025-09-08T22:16:20,967 ******************************************************************************** 2025-09-08T22:16:20,967 !! 2025-09-08T22:16:20,967 check.warn(importable) 2025-09-08T22:16:20,968 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-08T22:16:20,968 !! 2025-09-08T22:16:20,968 ******************************************************************************** 2025-09-08T22:16:20,968 ############################ 2025-09-08T22:16:20,968 # Package would be ignored # 2025-09-08T22:16:20,968 ############################ 2025-09-08T22:16:20,968 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-08T22:16:20,968 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,968 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,968 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-08T22:16:20,969 to the `packages` configuration field. 2025-09-08T22:16:20,969 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,969 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,969 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,969 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,969 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,969 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-08T22:16:20,969 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-08T22:16:20,970 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,970 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,970 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,970 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,970 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,970 even if it does not contain any `.py` files. 2025-09-08T22:16:20,971 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,971 directory, all directories are treated like packages. 2025-09-08T22:16:20,971 ******************************************************************************** 2025-09-08T22:16:20,971 !! 2025-09-08T22:16:20,971 check.warn(importable) 2025-09-08T22:16:20,971 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-08T22:16:20,971 !! 2025-09-08T22:16:20,971 ******************************************************************************** 2025-09-08T22:16:20,971 ############################ 2025-09-08T22:16:20,971 # Package would be ignored # 2025-09-08T22:16:20,972 ############################ 2025-09-08T22:16:20,972 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-08T22:16:20,972 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,972 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,972 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-08T22:16:20,972 to the `packages` configuration field. 2025-09-08T22:16:20,972 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,972 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,972 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,973 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,973 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,973 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-08T22:16:20,973 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-08T22:16:20,973 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,973 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,973 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,974 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,974 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,974 even if it does not contain any `.py` files. 2025-09-08T22:16:20,974 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,974 directory, all directories are treated like packages. 2025-09-08T22:16:20,974 ******************************************************************************** 2025-09-08T22:16:20,974 !! 2025-09-08T22:16:20,974 check.warn(importable) 2025-09-08T22:16:20,974 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:20,975 !! 2025-09-08T22:16:20,975 ******************************************************************************** 2025-09-08T22:16:20,975 ############################ 2025-09-08T22:16:20,975 # Package would be ignored # 2025-09-08T22:16:20,975 ############################ 2025-09-08T22:16:20,975 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-08T22:16:20,975 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,975 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,975 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-08T22:16:20,975 to the `packages` configuration field. 2025-09-08T22:16:20,976 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,976 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,976 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,976 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-08T22:16:20,976 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-08T22:16:20,976 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,977 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,977 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,977 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,977 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,977 even if it does not contain any `.py` files. 2025-09-08T22:16:20,977 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,977 directory, all directories are treated like packages. 2025-09-08T22:16:20,978 ******************************************************************************** 2025-09-08T22:16:20,978 !! 2025-09-08T22:16:20,978 check.warn(importable) 2025-09-08T22:16:20,978 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:20,978 !! 2025-09-08T22:16:20,978 ******************************************************************************** 2025-09-08T22:16:20,978 ############################ 2025-09-08T22:16:20,978 # Package would be ignored # 2025-09-08T22:16:20,978 ############################ 2025-09-08T22:16:20,978 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:20,979 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,979 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,979 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-08T22:16:20,979 to the `packages` configuration field. 2025-09-08T22:16:20,979 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,979 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,979 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,980 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-08T22:16:20,980 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-08T22:16:20,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,980 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,980 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,981 even if it does not contain any `.py` files. 2025-09-08T22:16:20,981 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,981 directory, all directories are treated like packages. 2025-09-08T22:16:20,981 ******************************************************************************** 2025-09-08T22:16:20,981 !! 2025-09-08T22:16:20,981 check.warn(importable) 2025-09-08T22:16:20,981 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:16:20,981 !! 2025-09-08T22:16:20,981 ******************************************************************************** 2025-09-08T22:16:20,982 ############################ 2025-09-08T22:16:20,982 # Package would be ignored # 2025-09-08T22:16:20,982 ############################ 2025-09-08T22:16:20,982 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-08T22:16:20,982 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,982 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,982 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-08T22:16:20,982 to the `packages` configuration field. 2025-09-08T22:16:20,982 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,983 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,983 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,983 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-08T22:16:20,983 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-08T22:16:20,983 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,983 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,983 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,984 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,984 even if it does not contain any `.py` files. 2025-09-08T22:16:20,984 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,984 directory, all directories are treated like packages. 2025-09-08T22:16:20,984 ******************************************************************************** 2025-09-08T22:16:20,985 !! 2025-09-08T22:16:20,985 check.warn(importable) 2025-09-08T22:16:20,985 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:16:20,985 !! 2025-09-08T22:16:20,985 ******************************************************************************** 2025-09-08T22:16:20,985 ############################ 2025-09-08T22:16:20,985 # Package would be ignored # 2025-09-08T22:16:20,985 ############################ 2025-09-08T22:16:20,985 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-08T22:16:20,985 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,986 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,986 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-08T22:16:20,986 to the `packages` configuration field. 2025-09-08T22:16:20,986 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,986 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,986 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,986 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,987 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-08T22:16:20,987 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-08T22:16:20,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,987 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,987 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,988 even if it does not contain any `.py` files. 2025-09-08T22:16:20,988 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,988 directory, all directories are treated like packages. 2025-09-08T22:16:20,988 ******************************************************************************** 2025-09-08T22:16:20,988 !! 2025-09-08T22:16:20,988 check.warn(importable) 2025-09-08T22:16:20,988 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:16:20,988 !! 2025-09-08T22:16:20,988 ******************************************************************************** 2025-09-08T22:16:20,989 ############################ 2025-09-08T22:16:20,989 # Package would be ignored # 2025-09-08T22:16:20,989 ############################ 2025-09-08T22:16:20,989 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-08T22:16:20,989 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,989 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,989 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-08T22:16:20,989 to the `packages` configuration field. 2025-09-08T22:16:20,989 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,989 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,990 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,990 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,990 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,990 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-08T22:16:20,990 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-08T22:16:20,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,990 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,991 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,991 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,991 even if it does not contain any `.py` files. 2025-09-08T22:16:20,991 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,991 directory, all directories are treated like packages. 2025-09-08T22:16:20,991 ******************************************************************************** 2025-09-08T22:16:20,991 !! 2025-09-08T22:16:20,992 check.warn(importable) 2025-09-08T22:16:20,992 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:16:20,992 !! 2025-09-08T22:16:20,992 ******************************************************************************** 2025-09-08T22:16:20,992 ############################ 2025-09-08T22:16:20,992 # Package would be ignored # 2025-09-08T22:16:20,992 ############################ 2025-09-08T22:16:20,992 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-08T22:16:20,992 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,992 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,993 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-08T22:16:20,993 to the `packages` configuration field. 2025-09-08T22:16:20,993 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,993 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,993 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,993 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-08T22:16:20,994 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-08T22:16:20,994 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,994 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,994 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,994 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,994 even if it does not contain any `.py` files. 2025-09-08T22:16:20,995 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,995 directory, all directories are treated like packages. 2025-09-08T22:16:20,995 ******************************************************************************** 2025-09-08T22:16:20,995 !! 2025-09-08T22:16:20,995 check.warn(importable) 2025-09-08T22:16:20,995 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:20,995 !! 2025-09-08T22:16:20,995 ******************************************************************************** 2025-09-08T22:16:20,995 ############################ 2025-09-08T22:16:20,995 # Package would be ignored # 2025-09-08T22:16:20,996 ############################ 2025-09-08T22:16:20,996 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-08T22:16:20,996 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,996 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:20,996 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-08T22:16:20,996 to the `packages` configuration field. 2025-09-08T22:16:20,996 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:20,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:20,996 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:20,997 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:20,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:20,997 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-08T22:16:20,997 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-08T22:16:20,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:20,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:20,997 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:20,998 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:20,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:20,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:20,998 even if it does not contain any `.py` files. 2025-09-08T22:16:20,998 On the other hand, currently there is no concept of package data 2025-09-08T22:16:20,998 directory, all directories are treated like packages. 2025-09-08T22:16:20,998 ******************************************************************************** 2025-09-08T22:16:20,998 !! 2025-09-08T22:16:20,999 check.warn(importable) 2025-09-08T22:16:20,999 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:20,999 !! 2025-09-08T22:16:20,999 ******************************************************************************** 2025-09-08T22:16:20,999 ############################ 2025-09-08T22:16:20,999 # Package would be ignored # 2025-09-08T22:16:20,999 ############################ 2025-09-08T22:16:20,999 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-08T22:16:20,999 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:20,999 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,000 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-08T22:16:21,000 to the `packages` configuration field. 2025-09-08T22:16:21,000 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,000 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,000 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,000 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,000 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-08T22:16:21,001 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-08T22:16:21,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,001 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,001 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,001 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,001 even if it does not contain any `.py` files. 2025-09-08T22:16:21,002 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,002 directory, all directories are treated like packages. 2025-09-08T22:16:21,002 ******************************************************************************** 2025-09-08T22:16:21,002 !! 2025-09-08T22:16:21,002 check.warn(importable) 2025-09-08T22:16:21,002 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,002 !! 2025-09-08T22:16:21,002 ******************************************************************************** 2025-09-08T22:16:21,002 ############################ 2025-09-08T22:16:21,002 # Package would be ignored # 2025-09-08T22:16:21,002 ############################ 2025-09-08T22:16:21,003 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,003 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,003 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,003 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,003 to the `packages` configuration field. 2025-09-08T22:16:21,003 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,003 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,003 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,004 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,004 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-08T22:16:21,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,004 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,004 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,004 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,005 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,005 even if it does not contain any `.py` files. 2025-09-08T22:16:21,005 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,005 directory, all directories are treated like packages. 2025-09-08T22:16:21,005 ******************************************************************************** 2025-09-08T22:16:21,005 !! 2025-09-08T22:16:21,005 check.warn(importable) 2025-09-08T22:16:21,005 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,005 !! 2025-09-08T22:16:21,006 ******************************************************************************** 2025-09-08T22:16:21,006 ############################ 2025-09-08T22:16:21,006 # Package would be ignored # 2025-09-08T22:16:21,006 ############################ 2025-09-08T22:16:21,006 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-08T22:16:21,006 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,006 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,006 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-08T22:16:21,006 to the `packages` configuration field. 2025-09-08T22:16:21,006 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,007 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,007 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,007 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,007 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-08T22:16:21,007 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-08T22:16:21,007 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,007 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,007 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,008 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,008 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,008 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,008 even if it does not contain any `.py` files. 2025-09-08T22:16:21,008 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,008 directory, all directories are treated like packages. 2025-09-08T22:16:21,008 ******************************************************************************** 2025-09-08T22:16:21,009 !! 2025-09-08T22:16:21,009 check.warn(importable) 2025-09-08T22:16:21,009 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,009 !! 2025-09-08T22:16:21,009 ******************************************************************************** 2025-09-08T22:16:21,009 ############################ 2025-09-08T22:16:21,009 # Package would be ignored # 2025-09-08T22:16:21,009 ############################ 2025-09-08T22:16:21,009 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-08T22:16:21,009 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,010 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,010 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-08T22:16:21,010 to the `packages` configuration field. 2025-09-08T22:16:21,010 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,010 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,010 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,010 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,011 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,011 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-08T22:16:21,011 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-08T22:16:21,011 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,011 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,011 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,011 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,012 even if it does not contain any `.py` files. 2025-09-08T22:16:21,012 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,012 directory, all directories are treated like packages. 2025-09-08T22:16:21,012 ******************************************************************************** 2025-09-08T22:16:21,012 !! 2025-09-08T22:16:21,012 check.warn(importable) 2025-09-08T22:16:21,012 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,012 !! 2025-09-08T22:16:21,012 ******************************************************************************** 2025-09-08T22:16:21,013 ############################ 2025-09-08T22:16:21,013 # Package would be ignored # 2025-09-08T22:16:21,013 ############################ 2025-09-08T22:16:21,013 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,013 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,013 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,013 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-08T22:16:21,013 to the `packages` configuration field. 2025-09-08T22:16:21,013 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,014 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,014 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,014 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,014 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-08T22:16:21,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,014 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,015 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,015 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,015 even if it does not contain any `.py` files. 2025-09-08T22:16:21,015 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,015 directory, all directories are treated like packages. 2025-09-08T22:16:21,015 ******************************************************************************** 2025-09-08T22:16:21,015 !! 2025-09-08T22:16:21,015 check.warn(importable) 2025-09-08T22:16:21,016 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,016 !! 2025-09-08T22:16:21,016 ******************************************************************************** 2025-09-08T22:16:21,016 ############################ 2025-09-08T22:16:21,016 # Package would be ignored # 2025-09-08T22:16:21,016 ############################ 2025-09-08T22:16:21,016 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-08T22:16:21,016 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,016 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,016 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-08T22:16:21,017 to the `packages` configuration field. 2025-09-08T22:16:21,017 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,017 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,017 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,017 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,017 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-08T22:16:21,017 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-08T22:16:21,018 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,018 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,018 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,018 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,018 even if it does not contain any `.py` files. 2025-09-08T22:16:21,018 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,019 directory, all directories are treated like packages. 2025-09-08T22:16:21,019 ******************************************************************************** 2025-09-08T22:16:21,019 !! 2025-09-08T22:16:21,019 check.warn(importable) 2025-09-08T22:16:21,019 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,019 !! 2025-09-08T22:16:21,019 ******************************************************************************** 2025-09-08T22:16:21,019 ############################ 2025-09-08T22:16:21,019 # Package would be ignored # 2025-09-08T22:16:21,019 ############################ 2025-09-08T22:16:21,020 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-08T22:16:21,020 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,020 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,020 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-08T22:16:21,020 to the `packages` configuration field. 2025-09-08T22:16:21,020 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,020 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,020 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,021 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,021 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,021 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-08T22:16:21,021 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-08T22:16:21,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,021 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,021 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,022 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,022 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,022 even if it does not contain any `.py` files. 2025-09-08T22:16:21,022 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,022 directory, all directories are treated like packages. 2025-09-08T22:16:21,022 ******************************************************************************** 2025-09-08T22:16:21,022 !! 2025-09-08T22:16:21,022 check.warn(importable) 2025-09-08T22:16:21,023 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,023 !! 2025-09-08T22:16:21,023 ******************************************************************************** 2025-09-08T22:16:21,023 ############################ 2025-09-08T22:16:21,023 # Package would be ignored # 2025-09-08T22:16:21,023 ############################ 2025-09-08T22:16:21,023 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,023 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,023 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,023 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-08T22:16:21,024 to the `packages` configuration field. 2025-09-08T22:16:21,024 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,024 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,024 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,024 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,024 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,024 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-08T22:16:21,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,025 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,025 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,025 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,025 even if it does not contain any `.py` files. 2025-09-08T22:16:21,025 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,025 directory, all directories are treated like packages. 2025-09-08T22:16:21,026 ******************************************************************************** 2025-09-08T22:16:21,026 !! 2025-09-08T22:16:21,026 check.warn(importable) 2025-09-08T22:16:21,026 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:16:21,026 !! 2025-09-08T22:16:21,026 ******************************************************************************** 2025-09-08T22:16:21,026 ############################ 2025-09-08T22:16:21,026 # Package would be ignored # 2025-09-08T22:16:21,026 ############################ 2025-09-08T22:16:21,026 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-08T22:16:21,027 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,027 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,027 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-08T22:16:21,027 to the `packages` configuration field. 2025-09-08T22:16:21,027 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,027 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,027 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,027 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,028 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,028 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-08T22:16:21,028 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-08T22:16:21,028 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,028 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,028 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,029 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,029 even if it does not contain any `.py` files. 2025-09-08T22:16:21,029 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,029 directory, all directories are treated like packages. 2025-09-08T22:16:21,029 ******************************************************************************** 2025-09-08T22:16:21,029 !! 2025-09-08T22:16:21,029 check.warn(importable) 2025-09-08T22:16:21,029 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:16:21,029 !! 2025-09-08T22:16:21,030 ******************************************************************************** 2025-09-08T22:16:21,030 ############################ 2025-09-08T22:16:21,030 # Package would be ignored # 2025-09-08T22:16:21,030 ############################ 2025-09-08T22:16:21,030 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-08T22:16:21,030 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,030 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,030 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-08T22:16:21,030 to the `packages` configuration field. 2025-09-08T22:16:21,030 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,031 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,031 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,031 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,031 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-08T22:16:21,031 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-08T22:16:21,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,031 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,031 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,032 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,032 even if it does not contain any `.py` files. 2025-09-08T22:16:21,032 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,032 directory, all directories are treated like packages. 2025-09-08T22:16:21,032 ******************************************************************************** 2025-09-08T22:16:21,033 !! 2025-09-08T22:16:21,033 check.warn(importable) 2025-09-08T22:16:21,033 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:16:21,033 !! 2025-09-08T22:16:21,033 ******************************************************************************** 2025-09-08T22:16:21,033 ############################ 2025-09-08T22:16:21,033 # Package would be ignored # 2025-09-08T22:16:21,033 ############################ 2025-09-08T22:16:21,033 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-08T22:16:21,033 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,034 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,034 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-08T22:16:21,034 to the `packages` configuration field. 2025-09-08T22:16:21,034 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,034 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,034 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,034 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,035 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-08T22:16:21,035 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-08T22:16:21,035 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,035 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,035 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,035 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,035 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,036 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,036 even if it does not contain any `.py` files. 2025-09-08T22:16:21,036 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,036 directory, all directories are treated like packages. 2025-09-08T22:16:21,036 ******************************************************************************** 2025-09-08T22:16:21,036 !! 2025-09-08T22:16:21,036 check.warn(importable) 2025-09-08T22:16:21,036 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:16:21,036 !! 2025-09-08T22:16:21,037 ******************************************************************************** 2025-09-08T22:16:21,037 ############################ 2025-09-08T22:16:21,037 # Package would be ignored # 2025-09-08T22:16:21,037 ############################ 2025-09-08T22:16:21,037 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-08T22:16:21,037 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,037 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,037 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-08T22:16:21,037 to the `packages` configuration field. 2025-09-08T22:16:21,037 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,038 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,038 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,038 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-08T22:16:21,038 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-08T22:16:21,038 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,038 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,039 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,039 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,039 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,039 even if it does not contain any `.py` files. 2025-09-08T22:16:21,039 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,039 directory, all directories are treated like packages. 2025-09-08T22:16:21,039 ******************************************************************************** 2025-09-08T22:16:21,040 !! 2025-09-08T22:16:21,040 check.warn(importable) 2025-09-08T22:16:21,040 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,040 !! 2025-09-08T22:16:21,040 ******************************************************************************** 2025-09-08T22:16:21,040 ############################ 2025-09-08T22:16:21,040 # Package would be ignored # 2025-09-08T22:16:21,040 ############################ 2025-09-08T22:16:21,040 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-08T22:16:21,040 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,041 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,041 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-08T22:16:21,041 to the `packages` configuration field. 2025-09-08T22:16:21,041 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,041 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,041 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,041 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,041 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,042 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-08T22:16:21,042 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-08T22:16:21,042 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,042 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,042 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,042 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,042 even if it does not contain any `.py` files. 2025-09-08T22:16:21,043 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,043 directory, all directories are treated like packages. 2025-09-08T22:16:21,043 ******************************************************************************** 2025-09-08T22:16:21,043 !! 2025-09-08T22:16:21,043 check.warn(importable) 2025-09-08T22:16:21,043 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,043 !! 2025-09-08T22:16:21,043 ******************************************************************************** 2025-09-08T22:16:21,043 ############################ 2025-09-08T22:16:21,043 # Package would be ignored # 2025-09-08T22:16:21,044 ############################ 2025-09-08T22:16:21,044 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-08T22:16:21,044 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,044 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,044 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-08T22:16:21,044 to the `packages` configuration field. 2025-09-08T22:16:21,044 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,044 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,045 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,045 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-08T22:16:21,045 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-08T22:16:21,045 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,045 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,045 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,046 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,046 even if it does not contain any `.py` files. 2025-09-08T22:16:21,046 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,046 directory, all directories are treated like packages. 2025-09-08T22:16:21,046 ******************************************************************************** 2025-09-08T22:16:21,046 !! 2025-09-08T22:16:21,046 check.warn(importable) 2025-09-08T22:16:21,047 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,047 !! 2025-09-08T22:16:21,047 ******************************************************************************** 2025-09-08T22:16:21,047 ############################ 2025-09-08T22:16:21,047 # Package would be ignored # 2025-09-08T22:16:21,047 ############################ 2025-09-08T22:16:21,047 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,047 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,047 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,048 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-08T22:16:21,048 to the `packages` configuration field. 2025-09-08T22:16:21,048 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,048 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,048 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,048 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,048 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,048 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,049 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-08T22:16:21,049 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,049 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,049 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,049 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,049 even if it does not contain any `.py` files. 2025-09-08T22:16:21,050 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,050 directory, all directories are treated like packages. 2025-09-08T22:16:21,050 ******************************************************************************** 2025-09-08T22:16:21,050 !! 2025-09-08T22:16:21,050 check.warn(importable) 2025-09-08T22:16:21,050 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,050 !! 2025-09-08T22:16:21,050 ******************************************************************************** 2025-09-08T22:16:21,050 ############################ 2025-09-08T22:16:21,050 # Package would be ignored # 2025-09-08T22:16:21,051 ############################ 2025-09-08T22:16:21,051 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-08T22:16:21,051 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,051 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,051 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-08T22:16:21,051 to the `packages` configuration field. 2025-09-08T22:16:21,051 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,051 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,051 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,052 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,052 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-08T22:16:21,052 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-08T22:16:21,052 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,052 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,052 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,053 even if it does not contain any `.py` files. 2025-09-08T22:16:21,053 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,053 directory, all directories are treated like packages. 2025-09-08T22:16:21,053 ******************************************************************************** 2025-09-08T22:16:21,053 !! 2025-09-08T22:16:21,053 check.warn(importable) 2025-09-08T22:16:21,053 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,053 !! 2025-09-08T22:16:21,054 ******************************************************************************** 2025-09-08T22:16:21,054 ############################ 2025-09-08T22:16:21,054 # Package would be ignored # 2025-09-08T22:16:21,054 ############################ 2025-09-08T22:16:21,054 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,054 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,054 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,054 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-08T22:16:21,054 to the `packages` configuration field. 2025-09-08T22:16:21,055 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,055 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,055 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,055 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-08T22:16:21,055 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-08T22:16:21,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,056 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,056 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,056 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,056 even if it does not contain any `.py` files. 2025-09-08T22:16:21,056 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,056 directory, all directories are treated like packages. 2025-09-08T22:16:21,056 ******************************************************************************** 2025-09-08T22:16:21,057 !! 2025-09-08T22:16:21,057 check.warn(importable) 2025-09-08T22:16:21,057 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,057 !! 2025-09-08T22:16:21,057 ******************************************************************************** 2025-09-08T22:16:21,057 ############################ 2025-09-08T22:16:21,057 # Package would be ignored # 2025-09-08T22:16:21,057 ############################ 2025-09-08T22:16:21,057 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,057 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,058 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,058 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,058 to the `packages` configuration field. 2025-09-08T22:16:21,058 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,058 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,058 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,058 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,059 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,059 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-08T22:16:21,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,059 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,059 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,059 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,060 even if it does not contain any `.py` files. 2025-09-08T22:16:21,060 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,060 directory, all directories are treated like packages. 2025-09-08T22:16:21,060 ******************************************************************************** 2025-09-08T22:16:21,060 !! 2025-09-08T22:16:21,060 check.warn(importable) 2025-09-08T22:16:21,060 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,060 !! 2025-09-08T22:16:21,061 ******************************************************************************** 2025-09-08T22:16:21,061 ############################ 2025-09-08T22:16:21,061 # Package would be ignored # 2025-09-08T22:16:21,061 ############################ 2025-09-08T22:16:21,061 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-08T22:16:21,061 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,061 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,061 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-08T22:16:21,061 to the `packages` configuration field. 2025-09-08T22:16:21,062 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,062 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,062 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,062 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,062 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-08T22:16:21,062 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-08T22:16:21,062 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,062 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,063 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,063 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,063 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,063 even if it does not contain any `.py` files. 2025-09-08T22:16:21,063 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,063 directory, all directories are treated like packages. 2025-09-08T22:16:21,063 ******************************************************************************** 2025-09-08T22:16:21,064 !! 2025-09-08T22:16:21,064 check.warn(importable) 2025-09-08T22:16:21,064 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,064 !! 2025-09-08T22:16:21,064 ******************************************************************************** 2025-09-08T22:16:21,064 ############################ 2025-09-08T22:16:21,064 # Package would be ignored # 2025-09-08T22:16:21,064 ############################ 2025-09-08T22:16:21,064 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-08T22:16:21,064 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,065 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,065 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-08T22:16:21,065 to the `packages` configuration field. 2025-09-08T22:16:21,065 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,065 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,065 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,065 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,065 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,066 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-08T22:16:21,066 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-08T22:16:21,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,066 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,066 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,066 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,067 even if it does not contain any `.py` files. 2025-09-08T22:16:21,067 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,067 directory, all directories are treated like packages. 2025-09-08T22:16:21,067 ******************************************************************************** 2025-09-08T22:16:21,067 !! 2025-09-08T22:16:21,067 check.warn(importable) 2025-09-08T22:16:21,067 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,067 !! 2025-09-08T22:16:21,067 ******************************************************************************** 2025-09-08T22:16:21,067 ############################ 2025-09-08T22:16:21,068 # Package would be ignored # 2025-09-08T22:16:21,068 ############################ 2025-09-08T22:16:21,068 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,068 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,068 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,068 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-08T22:16:21,068 to the `packages` configuration field. 2025-09-08T22:16:21,068 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,068 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,069 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,069 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,069 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-08T22:16:21,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,069 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,069 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,070 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,070 even if it does not contain any `.py` files. 2025-09-08T22:16:21,070 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,070 directory, all directories are treated like packages. 2025-09-08T22:16:21,070 ******************************************************************************** 2025-09-08T22:16:21,070 !! 2025-09-08T22:16:21,070 check.warn(importable) 2025-09-08T22:16:21,071 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,071 !! 2025-09-08T22:16:21,071 ******************************************************************************** 2025-09-08T22:16:21,071 ############################ 2025-09-08T22:16:21,071 # Package would be ignored # 2025-09-08T22:16:21,071 ############################ 2025-09-08T22:16:21,071 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-08T22:16:21,071 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,071 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,072 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-08T22:16:21,072 to the `packages` configuration field. 2025-09-08T22:16:21,072 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,072 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,072 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,072 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-08T22:16:21,073 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-08T22:16:21,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,073 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,073 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,073 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,073 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,073 even if it does not contain any `.py` files. 2025-09-08T22:16:21,074 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,074 directory, all directories are treated like packages. 2025-09-08T22:16:21,074 ******************************************************************************** 2025-09-08T22:16:21,074 !! 2025-09-08T22:16:21,074 check.warn(importable) 2025-09-08T22:16:21,074 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,074 !! 2025-09-08T22:16:21,074 ******************************************************************************** 2025-09-08T22:16:21,074 ############################ 2025-09-08T22:16:21,074 # Package would be ignored # 2025-09-08T22:16:21,075 ############################ 2025-09-08T22:16:21,075 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-08T22:16:21,075 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,075 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,075 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-08T22:16:21,075 to the `packages` configuration field. 2025-09-08T22:16:21,075 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,075 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,075 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,076 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,076 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-08T22:16:21,076 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-08T22:16:21,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,076 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,076 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,077 even if it does not contain any `.py` files. 2025-09-08T22:16:21,077 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,077 directory, all directories are treated like packages. 2025-09-08T22:16:21,077 ******************************************************************************** 2025-09-08T22:16:21,077 !! 2025-09-08T22:16:21,077 check.warn(importable) 2025-09-08T22:16:21,077 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,077 !! 2025-09-08T22:16:21,078 ******************************************************************************** 2025-09-08T22:16:21,078 ############################ 2025-09-08T22:16:21,078 # Package would be ignored # 2025-09-08T22:16:21,078 ############################ 2025-09-08T22:16:21,078 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,078 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,078 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,078 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-08T22:16:21,078 to the `packages` configuration field. 2025-09-08T22:16:21,079 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,079 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,079 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,079 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,079 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,079 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-08T22:16:21,079 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,079 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,080 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,080 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,080 even if it does not contain any `.py` files. 2025-09-08T22:16:21,080 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,080 directory, all directories are treated like packages. 2025-09-08T22:16:21,080 ******************************************************************************** 2025-09-08T22:16:21,081 !! 2025-09-08T22:16:21,081 check.warn(importable) 2025-09-08T22:16:21,081 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:16:21,081 !! 2025-09-08T22:16:21,081 ******************************************************************************** 2025-09-08T22:16:21,081 ############################ 2025-09-08T22:16:21,081 # Package would be ignored # 2025-09-08T22:16:21,081 ############################ 2025-09-08T22:16:21,081 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-08T22:16:21,081 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,082 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,082 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-08T22:16:21,082 to the `packages` configuration field. 2025-09-08T22:16:21,082 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,082 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,082 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,082 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,083 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-08T22:16:21,083 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-08T22:16:21,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,083 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,083 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,083 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,084 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,084 even if it does not contain any `.py` files. 2025-09-08T22:16:21,084 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,084 directory, all directories are treated like packages. 2025-09-08T22:16:21,084 ******************************************************************************** 2025-09-08T22:16:21,084 !! 2025-09-08T22:16:21,084 check.warn(importable) 2025-09-08T22:16:21,084 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:16:21,084 !! 2025-09-08T22:16:21,085 ******************************************************************************** 2025-09-08T22:16:21,085 ############################ 2025-09-08T22:16:21,085 # Package would be ignored # 2025-09-08T22:16:21,085 ############################ 2025-09-08T22:16:21,085 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-08T22:16:21,085 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,085 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,085 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-08T22:16:21,085 to the `packages` configuration field. 2025-09-08T22:16:21,085 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,086 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,086 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,086 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-08T22:16:21,086 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-08T22:16:21,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,087 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,087 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,087 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,087 even if it does not contain any `.py` files. 2025-09-08T22:16:21,087 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,087 directory, all directories are treated like packages. 2025-09-08T22:16:21,088 ******************************************************************************** 2025-09-08T22:16:21,088 !! 2025-09-08T22:16:21,088 check.warn(importable) 2025-09-08T22:16:21,088 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:16:21,088 !! 2025-09-08T22:16:21,088 ******************************************************************************** 2025-09-08T22:16:21,088 ############################ 2025-09-08T22:16:21,088 # Package would be ignored # 2025-09-08T22:16:21,088 ############################ 2025-09-08T22:16:21,088 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-08T22:16:21,089 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,089 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,089 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-08T22:16:21,089 to the `packages` configuration field. 2025-09-08T22:16:21,089 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,089 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,089 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,089 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,090 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-08T22:16:21,090 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-08T22:16:21,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,090 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,090 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,091 even if it does not contain any `.py` files. 2025-09-08T22:16:21,091 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,091 directory, all directories are treated like packages. 2025-09-08T22:16:21,091 ******************************************************************************** 2025-09-08T22:16:21,091 !! 2025-09-08T22:16:21,091 check.warn(importable) 2025-09-08T22:16:21,091 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:16:21,091 !! 2025-09-08T22:16:21,091 ******************************************************************************** 2025-09-08T22:16:21,092 ############################ 2025-09-08T22:16:21,092 # Package would be ignored # 2025-09-08T22:16:21,092 ############################ 2025-09-08T22:16:21,092 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-08T22:16:21,092 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,092 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,092 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-08T22:16:21,092 to the `packages` configuration field. 2025-09-08T22:16:21,092 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,093 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,093 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,093 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-08T22:16:21,093 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-08T22:16:21,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,093 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,093 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,094 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,094 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,094 even if it does not contain any `.py` files. 2025-09-08T22:16:21,094 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,094 directory, all directories are treated like packages. 2025-09-08T22:16:21,094 ******************************************************************************** 2025-09-08T22:16:21,094 !! 2025-09-08T22:16:21,094 check.warn(importable) 2025-09-08T22:16:21,095 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,095 !! 2025-09-08T22:16:21,095 ******************************************************************************** 2025-09-08T22:16:21,095 ############################ 2025-09-08T22:16:21,095 # Package would be ignored # 2025-09-08T22:16:21,095 ############################ 2025-09-08T22:16:21,095 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-08T22:16:21,095 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,095 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,096 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-08T22:16:21,096 to the `packages` configuration field. 2025-09-08T22:16:21,096 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,096 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,096 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,097 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-08T22:16:21,097 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-08T22:16:21,097 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,097 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,097 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,098 even if it does not contain any `.py` files. 2025-09-08T22:16:21,098 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,098 directory, all directories are treated like packages. 2025-09-08T22:16:21,098 ******************************************************************************** 2025-09-08T22:16:21,098 !! 2025-09-08T22:16:21,098 check.warn(importable) 2025-09-08T22:16:21,098 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,098 !! 2025-09-08T22:16:21,098 ******************************************************************************** 2025-09-08T22:16:21,098 ############################ 2025-09-08T22:16:21,099 # Package would be ignored # 2025-09-08T22:16:21,099 ############################ 2025-09-08T22:16:21,099 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,099 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,099 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,099 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-08T22:16:21,099 to the `packages` configuration field. 2025-09-08T22:16:21,099 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,099 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,100 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,100 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-08T22:16:21,100 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-08T22:16:21,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,100 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,100 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,101 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,101 even if it does not contain any `.py` files. 2025-09-08T22:16:21,101 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,101 directory, all directories are treated like packages. 2025-09-08T22:16:21,101 ******************************************************************************** 2025-09-08T22:16:21,101 !! 2025-09-08T22:16:21,101 check.warn(importable) 2025-09-08T22:16:21,101 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,102 !! 2025-09-08T22:16:21,102 ******************************************************************************** 2025-09-08T22:16:21,102 ############################ 2025-09-08T22:16:21,102 # Package would be ignored # 2025-09-08T22:16:21,102 ############################ 2025-09-08T22:16:21,102 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,102 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,102 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,102 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,102 to the `packages` configuration field. 2025-09-08T22:16:21,103 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,103 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,103 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,103 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,103 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-08T22:16:21,103 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,104 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,104 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,104 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,104 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,104 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,104 even if it does not contain any `.py` files. 2025-09-08T22:16:21,104 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,104 directory, all directories are treated like packages. 2025-09-08T22:16:21,105 ******************************************************************************** 2025-09-08T22:16:21,105 !! 2025-09-08T22:16:21,105 check.warn(importable) 2025-09-08T22:16:21,105 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,105 !! 2025-09-08T22:16:21,105 ******************************************************************************** 2025-09-08T22:16:21,105 ############################ 2025-09-08T22:16:21,105 # Package would be ignored # 2025-09-08T22:16:21,105 ############################ 2025-09-08T22:16:21,105 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-08T22:16:21,106 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,106 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,106 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-08T22:16:21,106 to the `packages` configuration field. 2025-09-08T22:16:21,106 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,106 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,106 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,107 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-08T22:16:21,107 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-08T22:16:21,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,107 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,107 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,107 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,107 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,108 even if it does not contain any `.py` files. 2025-09-08T22:16:21,108 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,108 directory, all directories are treated like packages. 2025-09-08T22:16:21,108 ******************************************************************************** 2025-09-08T22:16:21,108 !! 2025-09-08T22:16:21,108 check.warn(importable) 2025-09-08T22:16:21,108 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,108 !! 2025-09-08T22:16:21,109 ******************************************************************************** 2025-09-08T22:16:21,109 ############################ 2025-09-08T22:16:21,109 # Package would be ignored # 2025-09-08T22:16:21,109 ############################ 2025-09-08T22:16:21,109 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-08T22:16:21,109 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,109 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,109 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-08T22:16:21,109 to the `packages` configuration field. 2025-09-08T22:16:21,110 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,110 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,110 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,110 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-08T22:16:21,110 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-08T22:16:21,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,111 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,111 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,111 even if it does not contain any `.py` files. 2025-09-08T22:16:21,111 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,111 directory, all directories are treated like packages. 2025-09-08T22:16:21,112 ******************************************************************************** 2025-09-08T22:16:21,112 !! 2025-09-08T22:16:21,112 check.warn(importable) 2025-09-08T22:16:21,112 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,112 !! 2025-09-08T22:16:21,112 ******************************************************************************** 2025-09-08T22:16:21,112 ############################ 2025-09-08T22:16:21,112 # Package would be ignored # 2025-09-08T22:16:21,112 ############################ 2025-09-08T22:16:21,112 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,113 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,113 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,113 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-08T22:16:21,113 to the `packages` configuration field. 2025-09-08T22:16:21,113 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,113 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,113 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,114 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,114 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,114 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-08T22:16:21,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,114 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,114 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,114 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,115 even if it does not contain any `.py` files. 2025-09-08T22:16:21,115 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,115 directory, all directories are treated like packages. 2025-09-08T22:16:21,115 ******************************************************************************** 2025-09-08T22:16:21,115 !! 2025-09-08T22:16:21,115 check.warn(importable) 2025-09-08T22:16:21,115 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,115 !! 2025-09-08T22:16:21,115 ******************************************************************************** 2025-09-08T22:16:21,116 ############################ 2025-09-08T22:16:21,116 # Package would be ignored # 2025-09-08T22:16:21,116 ############################ 2025-09-08T22:16:21,116 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-08T22:16:21,116 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,116 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,116 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-08T22:16:21,116 to the `packages` configuration field. 2025-09-08T22:16:21,116 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,117 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,117 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,117 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-08T22:16:21,117 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-08T22:16:21,117 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,117 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,118 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,118 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,118 even if it does not contain any `.py` files. 2025-09-08T22:16:21,118 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,118 directory, all directories are treated like packages. 2025-09-08T22:16:21,118 ******************************************************************************** 2025-09-08T22:16:21,118 !! 2025-09-08T22:16:21,119 check.warn(importable) 2025-09-08T22:16:21,119 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,119 !! 2025-09-08T22:16:21,119 ******************************************************************************** 2025-09-08T22:16:21,119 ############################ 2025-09-08T22:16:21,119 # Package would be ignored # 2025-09-08T22:16:21,119 ############################ 2025-09-08T22:16:21,119 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-08T22:16:21,119 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,119 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,119 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-08T22:16:21,120 to the `packages` configuration field. 2025-09-08T22:16:21,120 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,120 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,120 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,120 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,120 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-08T22:16:21,121 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-08T22:16:21,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,121 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,121 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,122 even if it does not contain any `.py` files. 2025-09-08T22:16:21,122 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,122 directory, all directories are treated like packages. 2025-09-08T22:16:21,122 ******************************************************************************** 2025-09-08T22:16:21,122 !! 2025-09-08T22:16:21,122 check.warn(importable) 2025-09-08T22:16:21,122 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,122 !! 2025-09-08T22:16:21,122 ******************************************************************************** 2025-09-08T22:16:21,122 ############################ 2025-09-08T22:16:21,123 # Package would be ignored # 2025-09-08T22:16:21,123 ############################ 2025-09-08T22:16:21,123 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,123 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,123 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,123 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-08T22:16:21,123 to the `packages` configuration field. 2025-09-08T22:16:21,123 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,123 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,124 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,124 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,124 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,124 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-08T22:16:21,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,124 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,124 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,125 even if it does not contain any `.py` files. 2025-09-08T22:16:21,125 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,125 directory, all directories are treated like packages. 2025-09-08T22:16:21,125 ******************************************************************************** 2025-09-08T22:16:21,125 !! 2025-09-08T22:16:21,125 check.warn(importable) 2025-09-08T22:16:21,125 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,126 !! 2025-09-08T22:16:21,126 ******************************************************************************** 2025-09-08T22:16:21,126 ############################ 2025-09-08T22:16:21,126 # Package would be ignored # 2025-09-08T22:16:21,126 ############################ 2025-09-08T22:16:21,126 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-08T22:16:21,126 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,126 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,126 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-08T22:16:21,126 to the `packages` configuration field. 2025-09-08T22:16:21,127 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,127 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,127 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,127 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-08T22:16:21,127 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-08T22:16:21,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,128 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,128 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,128 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,128 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,128 even if it does not contain any `.py` files. 2025-09-08T22:16:21,128 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,128 directory, all directories are treated like packages. 2025-09-08T22:16:21,129 ******************************************************************************** 2025-09-08T22:16:21,129 !! 2025-09-08T22:16:21,129 check.warn(importable) 2025-09-08T22:16:21,129 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,129 !! 2025-09-08T22:16:21,129 ******************************************************************************** 2025-09-08T22:16:21,129 ############################ 2025-09-08T22:16:21,129 # Package would be ignored # 2025-09-08T22:16:21,129 ############################ 2025-09-08T22:16:21,129 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-08T22:16:21,129 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,130 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,130 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-08T22:16:21,130 to the `packages` configuration field. 2025-09-08T22:16:21,130 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,130 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,130 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,131 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-08T22:16:21,131 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-08T22:16:21,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,131 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,131 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,132 even if it does not contain any `.py` files. 2025-09-08T22:16:21,132 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,132 directory, all directories are treated like packages. 2025-09-08T22:16:21,132 ******************************************************************************** 2025-09-08T22:16:21,132 !! 2025-09-08T22:16:21,132 check.warn(importable) 2025-09-08T22:16:21,132 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,132 !! 2025-09-08T22:16:21,132 ******************************************************************************** 2025-09-08T22:16:21,133 ############################ 2025-09-08T22:16:21,133 # Package would be ignored # 2025-09-08T22:16:21,133 ############################ 2025-09-08T22:16:21,133 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,133 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,133 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,133 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-08T22:16:21,133 to the `packages` configuration field. 2025-09-08T22:16:21,133 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,134 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,134 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,134 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,134 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-08T22:16:21,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,134 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,135 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,135 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,135 even if it does not contain any `.py` files. 2025-09-08T22:16:21,135 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,135 directory, all directories are treated like packages. 2025-09-08T22:16:21,135 ******************************************************************************** 2025-09-08T22:16:21,136 !! 2025-09-08T22:16:21,136 check.warn(importable) 2025-09-08T22:16:21,136 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,136 !! 2025-09-08T22:16:21,136 ******************************************************************************** 2025-09-08T22:16:21,136 ############################ 2025-09-08T22:16:21,136 # Package would be ignored # 2025-09-08T22:16:21,136 ############################ 2025-09-08T22:16:21,136 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-08T22:16:21,136 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,137 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,137 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-08T22:16:21,137 to the `packages` configuration field. 2025-09-08T22:16:21,137 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,137 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,137 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,137 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,138 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-08T22:16:21,138 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-08T22:16:21,138 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,138 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,138 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,138 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,139 even if it does not contain any `.py` files. 2025-09-08T22:16:21,139 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,139 directory, all directories are treated like packages. 2025-09-08T22:16:21,139 ******************************************************************************** 2025-09-08T22:16:21,139 !! 2025-09-08T22:16:21,139 check.warn(importable) 2025-09-08T22:16:21,139 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,139 !! 2025-09-08T22:16:21,139 ******************************************************************************** 2025-09-08T22:16:21,140 ############################ 2025-09-08T22:16:21,140 # Package would be ignored # 2025-09-08T22:16:21,140 ############################ 2025-09-08T22:16:21,140 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-08T22:16:21,140 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,140 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,140 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-08T22:16:21,140 to the `packages` configuration field. 2025-09-08T22:16:21,140 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,141 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,141 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,141 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,141 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-08T22:16:21,141 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-08T22:16:21,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,141 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,141 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,142 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,142 even if it does not contain any `.py` files. 2025-09-08T22:16:21,142 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,142 directory, all directories are treated like packages. 2025-09-08T22:16:21,142 ******************************************************************************** 2025-09-08T22:16:21,142 !! 2025-09-08T22:16:21,142 check.warn(importable) 2025-09-08T22:16:21,143 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,143 !! 2025-09-08T22:16:21,143 ******************************************************************************** 2025-09-08T22:16:21,143 ############################ 2025-09-08T22:16:21,143 # Package would be ignored # 2025-09-08T22:16:21,143 ############################ 2025-09-08T22:16:21,143 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,143 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,143 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,143 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-08T22:16:21,144 to the `packages` configuration field. 2025-09-08T22:16:21,144 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,144 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,144 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,144 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,144 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-08T22:16:21,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,145 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,145 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,145 even if it does not contain any `.py` files. 2025-09-08T22:16:21,146 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,146 directory, all directories are treated like packages. 2025-09-08T22:16:21,146 ******************************************************************************** 2025-09-08T22:16:21,146 !! 2025-09-08T22:16:21,146 check.warn(importable) 2025-09-08T22:16:21,146 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,146 !! 2025-09-08T22:16:21,146 ******************************************************************************** 2025-09-08T22:16:21,146 ############################ 2025-09-08T22:16:21,146 # Package would be ignored # 2025-09-08T22:16:21,147 ############################ 2025-09-08T22:16:21,147 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-08T22:16:21,147 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,147 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,147 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-08T22:16:21,147 to the `packages` configuration field. 2025-09-08T22:16:21,147 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,147 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,148 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,148 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-08T22:16:21,148 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-08T22:16:21,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,148 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,148 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,148 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,149 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,149 even if it does not contain any `.py` files. 2025-09-08T22:16:21,149 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,149 directory, all directories are treated like packages. 2025-09-08T22:16:21,149 ******************************************************************************** 2025-09-08T22:16:21,149 !! 2025-09-08T22:16:21,149 check.warn(importable) 2025-09-08T22:16:21,150 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,150 !! 2025-09-08T22:16:21,150 ******************************************************************************** 2025-09-08T22:16:21,150 ############################ 2025-09-08T22:16:21,150 # Package would be ignored # 2025-09-08T22:16:21,150 ############################ 2025-09-08T22:16:21,150 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,150 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,150 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,150 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-08T22:16:21,151 to the `packages` configuration field. 2025-09-08T22:16:21,151 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,151 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,151 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,151 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-08T22:16:21,151 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-08T22:16:21,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,152 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,152 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,152 even if it does not contain any `.py` files. 2025-09-08T22:16:21,152 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,153 directory, all directories are treated like packages. 2025-09-08T22:16:21,153 ******************************************************************************** 2025-09-08T22:16:21,153 !! 2025-09-08T22:16:21,153 check.warn(importable) 2025-09-08T22:16:21,153 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,153 !! 2025-09-08T22:16:21,153 ******************************************************************************** 2025-09-08T22:16:21,153 ############################ 2025-09-08T22:16:21,153 # Package would be ignored # 2025-09-08T22:16:21,153 ############################ 2025-09-08T22:16:21,153 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,154 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,154 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,154 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,154 to the `packages` configuration field. 2025-09-08T22:16:21,154 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,154 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,154 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,155 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,155 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,155 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-08T22:16:21,155 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,155 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,155 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,155 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,156 even if it does not contain any `.py` files. 2025-09-08T22:16:21,156 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,156 directory, all directories are treated like packages. 2025-09-08T22:16:21,156 ******************************************************************************** 2025-09-08T22:16:21,156 !! 2025-09-08T22:16:21,156 check.warn(importable) 2025-09-08T22:16:21,156 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,156 !! 2025-09-08T22:16:21,157 ******************************************************************************** 2025-09-08T22:16:21,157 ############################ 2025-09-08T22:16:21,157 # Package would be ignored # 2025-09-08T22:16:21,157 ############################ 2025-09-08T22:16:21,157 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-08T22:16:21,157 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,157 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,157 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-08T22:16:21,157 to the `packages` configuration field. 2025-09-08T22:16:21,157 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,158 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,158 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,158 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,158 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-08T22:16:21,158 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-08T22:16:21,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,158 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,159 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,159 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,159 even if it does not contain any `.py` files. 2025-09-08T22:16:21,159 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,159 directory, all directories are treated like packages. 2025-09-08T22:16:21,159 ******************************************************************************** 2025-09-08T22:16:21,160 !! 2025-09-08T22:16:21,160 check.warn(importable) 2025-09-08T22:16:21,160 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,160 !! 2025-09-08T22:16:21,160 ******************************************************************************** 2025-09-08T22:16:21,160 ############################ 2025-09-08T22:16:21,160 # Package would be ignored # 2025-09-08T22:16:21,160 ############################ 2025-09-08T22:16:21,160 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-08T22:16:21,160 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,161 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,161 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-08T22:16:21,161 to the `packages` configuration field. 2025-09-08T22:16:21,161 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,161 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,161 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,162 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-08T22:16:21,162 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-08T22:16:21,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,162 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,162 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,163 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,163 even if it does not contain any `.py` files. 2025-09-08T22:16:21,163 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,163 directory, all directories are treated like packages. 2025-09-08T22:16:21,163 ******************************************************************************** 2025-09-08T22:16:21,163 !! 2025-09-08T22:16:21,163 check.warn(importable) 2025-09-08T22:16:21,163 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,163 !! 2025-09-08T22:16:21,163 ******************************************************************************** 2025-09-08T22:16:21,164 ############################ 2025-09-08T22:16:21,164 # Package would be ignored # 2025-09-08T22:16:21,164 ############################ 2025-09-08T22:16:21,164 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,164 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,164 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,164 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-08T22:16:21,164 to the `packages` configuration field. 2025-09-08T22:16:21,164 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,164 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,165 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,165 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,165 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,165 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-08T22:16:21,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,165 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,166 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,166 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,166 even if it does not contain any `.py` files. 2025-09-08T22:16:21,166 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,166 directory, all directories are treated like packages. 2025-09-08T22:16:21,166 ******************************************************************************** 2025-09-08T22:16:21,166 !! 2025-09-08T22:16:21,167 check.warn(importable) 2025-09-08T22:16:21,167 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,167 !! 2025-09-08T22:16:21,167 ******************************************************************************** 2025-09-08T22:16:21,167 ############################ 2025-09-08T22:16:21,167 # Package would be ignored # 2025-09-08T22:16:21,167 ############################ 2025-09-08T22:16:21,167 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-08T22:16:21,167 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,167 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,168 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-08T22:16:21,168 to the `packages` configuration field. 2025-09-08T22:16:21,168 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,168 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,168 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,168 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-08T22:16:21,169 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-08T22:16:21,169 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,169 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,169 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,169 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,169 even if it does not contain any `.py` files. 2025-09-08T22:16:21,169 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,170 directory, all directories are treated like packages. 2025-09-08T22:16:21,170 ******************************************************************************** 2025-09-08T22:16:21,170 !! 2025-09-08T22:16:21,170 check.warn(importable) 2025-09-08T22:16:21,170 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,170 !! 2025-09-08T22:16:21,170 ******************************************************************************** 2025-09-08T22:16:21,170 ############################ 2025-09-08T22:16:21,170 # Package would be ignored # 2025-09-08T22:16:21,171 ############################ 2025-09-08T22:16:21,171 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-08T22:16:21,171 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,171 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,171 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-08T22:16:21,171 to the `packages` configuration field. 2025-09-08T22:16:21,171 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,171 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,172 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,172 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-08T22:16:21,172 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-08T22:16:21,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,172 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,172 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,173 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,173 even if it does not contain any `.py` files. 2025-09-08T22:16:21,173 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,173 directory, all directories are treated like packages. 2025-09-08T22:16:21,173 ******************************************************************************** 2025-09-08T22:16:21,173 !! 2025-09-08T22:16:21,173 check.warn(importable) 2025-09-08T22:16:21,173 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,174 !! 2025-09-08T22:16:21,174 ******************************************************************************** 2025-09-08T22:16:21,174 ############################ 2025-09-08T22:16:21,174 # Package would be ignored # 2025-09-08T22:16:21,174 ############################ 2025-09-08T22:16:21,174 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,174 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,174 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,174 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-08T22:16:21,174 to the `packages` configuration field. 2025-09-08T22:16:21,175 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,175 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,175 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,175 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,175 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,175 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-08T22:16:21,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,176 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,176 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,176 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,176 even if it does not contain any `.py` files. 2025-09-08T22:16:21,176 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,176 directory, all directories are treated like packages. 2025-09-08T22:16:21,176 ******************************************************************************** 2025-09-08T22:16:21,177 !! 2025-09-08T22:16:21,177 check.warn(importable) 2025-09-08T22:16:21,177 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,177 !! 2025-09-08T22:16:21,177 ******************************************************************************** 2025-09-08T22:16:21,177 ############################ 2025-09-08T22:16:21,177 # Package would be ignored # 2025-09-08T22:16:21,177 ############################ 2025-09-08T22:16:21,177 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-08T22:16:21,177 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,178 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,178 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-08T22:16:21,178 to the `packages` configuration field. 2025-09-08T22:16:21,178 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,178 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,178 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,179 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-08T22:16:21,179 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-08T22:16:21,179 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,179 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,179 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,180 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,180 even if it does not contain any `.py` files. 2025-09-08T22:16:21,180 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,180 directory, all directories are treated like packages. 2025-09-08T22:16:21,180 ******************************************************************************** 2025-09-08T22:16:21,180 !! 2025-09-08T22:16:21,180 check.warn(importable) 2025-09-08T22:16:21,180 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,180 !! 2025-09-08T22:16:21,180 ******************************************************************************** 2025-09-08T22:16:21,181 ############################ 2025-09-08T22:16:21,181 # Package would be ignored # 2025-09-08T22:16:21,181 ############################ 2025-09-08T22:16:21,181 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,181 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,181 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,181 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-08T22:16:21,181 to the `packages` configuration field. 2025-09-08T22:16:21,181 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,182 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,182 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,182 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-08T22:16:21,182 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-08T22:16:21,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,182 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,183 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,183 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,183 even if it does not contain any `.py` files. 2025-09-08T22:16:21,183 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,183 directory, all directories are treated like packages. 2025-09-08T22:16:21,183 ******************************************************************************** 2025-09-08T22:16:21,184 !! 2025-09-08T22:16:21,184 check.warn(importable) 2025-09-08T22:16:21,184 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,184 !! 2025-09-08T22:16:21,184 ******************************************************************************** 2025-09-08T22:16:21,184 ############################ 2025-09-08T22:16:21,184 # Package would be ignored # 2025-09-08T22:16:21,184 ############################ 2025-09-08T22:16:21,184 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,184 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,185 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,185 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,185 to the `packages` configuration field. 2025-09-08T22:16:21,185 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,185 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,185 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,186 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,186 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-08T22:16:21,186 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,186 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,186 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,186 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,187 even if it does not contain any `.py` files. 2025-09-08T22:16:21,187 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,187 directory, all directories are treated like packages. 2025-09-08T22:16:21,187 ******************************************************************************** 2025-09-08T22:16:21,187 !! 2025-09-08T22:16:21,187 check.warn(importable) 2025-09-08T22:16:21,187 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,187 !! 2025-09-08T22:16:21,188 ******************************************************************************** 2025-09-08T22:16:21,188 ############################ 2025-09-08T22:16:21,188 # Package would be ignored # 2025-09-08T22:16:21,188 ############################ 2025-09-08T22:16:21,188 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-08T22:16:21,188 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,188 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,188 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-08T22:16:21,188 to the `packages` configuration field. 2025-09-08T22:16:21,188 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,189 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,189 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,189 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,189 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-08T22:16:21,189 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-08T22:16:21,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,189 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,190 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,190 even if it does not contain any `.py` files. 2025-09-08T22:16:21,190 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,190 directory, all directories are treated like packages. 2025-09-08T22:16:21,190 ******************************************************************************** 2025-09-08T22:16:21,191 !! 2025-09-08T22:16:21,191 check.warn(importable) 2025-09-08T22:16:21,191 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,191 !! 2025-09-08T22:16:21,191 ******************************************************************************** 2025-09-08T22:16:21,191 ############################ 2025-09-08T22:16:21,191 # Package would be ignored # 2025-09-08T22:16:21,191 ############################ 2025-09-08T22:16:21,191 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-08T22:16:21,191 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,191 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,192 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-08T22:16:21,192 to the `packages` configuration field. 2025-09-08T22:16:21,192 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,192 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,192 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,192 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,192 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-08T22:16:21,193 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-08T22:16:21,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,193 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,193 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,193 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,193 even if it does not contain any `.py` files. 2025-09-08T22:16:21,194 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,194 directory, all directories are treated like packages. 2025-09-08T22:16:21,194 ******************************************************************************** 2025-09-08T22:16:21,194 !! 2025-09-08T22:16:21,194 check.warn(importable) 2025-09-08T22:16:21,194 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,194 !! 2025-09-08T22:16:21,194 ******************************************************************************** 2025-09-08T22:16:21,194 ############################ 2025-09-08T22:16:21,194 # Package would be ignored # 2025-09-08T22:16:21,195 ############################ 2025-09-08T22:16:21,195 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,195 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,195 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,195 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-08T22:16:21,195 to the `packages` configuration field. 2025-09-08T22:16:21,195 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,195 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,196 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,196 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,196 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-08T22:16:21,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,196 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,196 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,196 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,197 even if it does not contain any `.py` files. 2025-09-08T22:16:21,197 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,197 directory, all directories are treated like packages. 2025-09-08T22:16:21,197 ******************************************************************************** 2025-09-08T22:16:21,197 !! 2025-09-08T22:16:21,198 check.warn(importable) 2025-09-08T22:16:21,198 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-08T22:16:21,198 !! 2025-09-08T22:16:21,198 ******************************************************************************** 2025-09-08T22:16:21,198 ############################ 2025-09-08T22:16:21,198 # Package would be ignored # 2025-09-08T22:16:21,198 ############################ 2025-09-08T22:16:21,198 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-08T22:16:21,198 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,198 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,199 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-08T22:16:21,199 to the `packages` configuration field. 2025-09-08T22:16:21,199 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,199 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,199 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,199 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,199 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,199 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-08T22:16:21,200 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-08T22:16:21,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,200 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,200 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,200 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,200 even if it does not contain any `.py` files. 2025-09-08T22:16:21,201 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,201 directory, all directories are treated like packages. 2025-09-08T22:16:21,201 ******************************************************************************** 2025-09-08T22:16:21,201 !! 2025-09-08T22:16:21,201 check.warn(importable) 2025-09-08T22:16:21,201 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,201 !! 2025-09-08T22:16:21,201 ******************************************************************************** 2025-09-08T22:16:21,201 ############################ 2025-09-08T22:16:21,201 # Package would be ignored # 2025-09-08T22:16:21,202 ############################ 2025-09-08T22:16:21,202 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-08T22:16:21,202 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,202 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,202 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-08T22:16:21,202 to the `packages` configuration field. 2025-09-08T22:16:21,202 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,202 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,203 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,203 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-08T22:16:21,203 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-08T22:16:21,203 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,203 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,203 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,203 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,204 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,204 even if it does not contain any `.py` files. 2025-09-08T22:16:21,204 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,204 directory, all directories are treated like packages. 2025-09-08T22:16:21,204 ******************************************************************************** 2025-09-08T22:16:21,204 !! 2025-09-08T22:16:21,204 check.warn(importable) 2025-09-08T22:16:21,204 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-08T22:16:21,205 !! 2025-09-08T22:16:21,205 ******************************************************************************** 2025-09-08T22:16:21,205 ############################ 2025-09-08T22:16:21,205 # Package would be ignored # 2025-09-08T22:16:21,205 ############################ 2025-09-08T22:16:21,205 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-08T22:16:21,205 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,205 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,205 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-08T22:16:21,205 to the `packages` configuration field. 2025-09-08T22:16:21,206 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,206 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,206 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,206 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-08T22:16:21,206 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-08T22:16:21,206 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,206 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,207 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,207 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,207 even if it does not contain any `.py` files. 2025-09-08T22:16:21,207 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,207 directory, all directories are treated like packages. 2025-09-08T22:16:21,208 ******************************************************************************** 2025-09-08T22:16:21,208 !! 2025-09-08T22:16:21,208 check.warn(importable) 2025-09-08T22:16:21,208 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,208 !! 2025-09-08T22:16:21,208 ******************************************************************************** 2025-09-08T22:16:21,208 ############################ 2025-09-08T22:16:21,208 # Package would be ignored # 2025-09-08T22:16:21,208 ############################ 2025-09-08T22:16:21,209 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-08T22:16:21,209 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,209 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,209 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-08T22:16:21,209 to the `packages` configuration field. 2025-09-08T22:16:21,209 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,209 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,209 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,210 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-08T22:16:21,210 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-08T22:16:21,210 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,210 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,210 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,210 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,210 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,211 even if it does not contain any `.py` files. 2025-09-08T22:16:21,211 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,211 directory, all directories are treated like packages. 2025-09-08T22:16:21,211 ******************************************************************************** 2025-09-08T22:16:21,211 !! 2025-09-08T22:16:21,211 check.warn(importable) 2025-09-08T22:16:21,211 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,211 !! 2025-09-08T22:16:21,212 ******************************************************************************** 2025-09-08T22:16:21,212 ############################ 2025-09-08T22:16:21,212 # Package would be ignored # 2025-09-08T22:16:21,212 ############################ 2025-09-08T22:16:21,212 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-08T22:16:21,212 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,212 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,212 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-08T22:16:21,212 to the `packages` configuration field. 2025-09-08T22:16:21,213 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,213 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,213 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,213 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,213 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,213 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-08T22:16:21,213 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-08T22:16:21,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,214 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,214 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,214 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,214 even if it does not contain any `.py` files. 2025-09-08T22:16:21,214 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,214 directory, all directories are treated like packages. 2025-09-08T22:16:21,214 ******************************************************************************** 2025-09-08T22:16:21,215 !! 2025-09-08T22:16:21,215 check.warn(importable) 2025-09-08T22:16:21,215 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,215 !! 2025-09-08T22:16:21,215 ******************************************************************************** 2025-09-08T22:16:21,215 ############################ 2025-09-08T22:16:21,215 # Package would be ignored # 2025-09-08T22:16:21,215 ############################ 2025-09-08T22:16:21,215 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,215 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,216 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,216 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-08T22:16:21,216 to the `packages` configuration field. 2025-09-08T22:16:21,216 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,216 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,216 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,216 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,216 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,217 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-08T22:16:21,217 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-08T22:16:21,217 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,217 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,217 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,218 even if it does not contain any `.py` files. 2025-09-08T22:16:21,218 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,218 directory, all directories are treated like packages. 2025-09-08T22:16:21,218 ******************************************************************************** 2025-09-08T22:16:21,218 !! 2025-09-08T22:16:21,218 check.warn(importable) 2025-09-08T22:16:21,218 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-08T22:16:21,218 !! 2025-09-08T22:16:21,219 ******************************************************************************** 2025-09-08T22:16:21,219 ############################ 2025-09-08T22:16:21,219 # Package would be ignored # 2025-09-08T22:16:21,219 ############################ 2025-09-08T22:16:21,219 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-08T22:16:21,219 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,219 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,219 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-08T22:16:21,219 to the `packages` configuration field. 2025-09-08T22:16:21,219 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,220 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,220 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,220 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-08T22:16:21,220 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-08T22:16:21,220 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,220 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,221 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,221 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,221 even if it does not contain any `.py` files. 2025-09-08T22:16:21,221 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,221 directory, all directories are treated like packages. 2025-09-08T22:16:21,222 ******************************************************************************** 2025-09-08T22:16:21,222 !! 2025-09-08T22:16:21,222 check.warn(importable) 2025-09-08T22:16:21,222 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,222 !! 2025-09-08T22:16:21,222 ******************************************************************************** 2025-09-08T22:16:21,222 ############################ 2025-09-08T22:16:21,222 # Package would be ignored # 2025-09-08T22:16:21,222 ############################ 2025-09-08T22:16:21,223 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-08T22:16:21,223 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,223 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,223 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-08T22:16:21,223 to the `packages` configuration field. 2025-09-08T22:16:21,223 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,223 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,223 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,224 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,224 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-08T22:16:21,224 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-08T22:16:21,224 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,224 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,224 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,224 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,225 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,225 even if it does not contain any `.py` files. 2025-09-08T22:16:21,225 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,225 directory, all directories are treated like packages. 2025-09-08T22:16:21,225 ******************************************************************************** 2025-09-08T22:16:21,225 !! 2025-09-08T22:16:21,225 check.warn(importable) 2025-09-08T22:16:21,226 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-08T22:16:21,226 !! 2025-09-08T22:16:21,226 ******************************************************************************** 2025-09-08T22:16:21,226 ############################ 2025-09-08T22:16:21,226 # Package would be ignored # 2025-09-08T22:16:21,226 ############################ 2025-09-08T22:16:21,226 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-08T22:16:21,226 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,226 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,226 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-08T22:16:21,227 to the `packages` configuration field. 2025-09-08T22:16:21,227 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,227 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,227 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,227 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-08T22:16:21,228 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-08T22:16:21,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,228 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,228 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,228 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,228 even if it does not contain any `.py` files. 2025-09-08T22:16:21,229 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,229 directory, all directories are treated like packages. 2025-09-08T22:16:21,229 ******************************************************************************** 2025-09-08T22:16:21,229 !! 2025-09-08T22:16:21,229 check.warn(importable) 2025-09-08T22:16:21,229 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,229 !! 2025-09-08T22:16:21,229 ******************************************************************************** 2025-09-08T22:16:21,229 ############################ 2025-09-08T22:16:21,230 # Package would be ignored # 2025-09-08T22:16:21,230 ############################ 2025-09-08T22:16:21,230 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-08T22:16:21,230 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,230 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,230 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-08T22:16:21,230 to the `packages` configuration field. 2025-09-08T22:16:21,230 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,230 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,231 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,231 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-08T22:16:21,231 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-08T22:16:21,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,231 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,231 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,232 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,232 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,232 even if it does not contain any `.py` files. 2025-09-08T22:16:21,232 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,232 directory, all directories are treated like packages. 2025-09-08T22:16:21,232 ******************************************************************************** 2025-09-08T22:16:21,232 !! 2025-09-08T22:16:21,232 check.warn(importable) 2025-09-08T22:16:21,233 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,233 !! 2025-09-08T22:16:21,233 ******************************************************************************** 2025-09-08T22:16:21,233 ############################ 2025-09-08T22:16:21,233 # Package would be ignored # 2025-09-08T22:16:21,233 ############################ 2025-09-08T22:16:21,233 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,233 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,233 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,234 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-08T22:16:21,234 to the `packages` configuration field. 2025-09-08T22:16:21,234 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,234 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,234 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,234 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,234 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-08T22:16:21,235 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-08T22:16:21,235 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,235 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,235 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,235 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,235 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,236 even if it does not contain any `.py` files. 2025-09-08T22:16:21,236 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,236 directory, all directories are treated like packages. 2025-09-08T22:16:21,236 ******************************************************************************** 2025-09-08T22:16:21,236 !! 2025-09-08T22:16:21,236 check.warn(importable) 2025-09-08T22:16:21,236 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,236 !! 2025-09-08T22:16:21,236 ******************************************************************************** 2025-09-08T22:16:21,236 ############################ 2025-09-08T22:16:21,237 # Package would be ignored # 2025-09-08T22:16:21,237 ############################ 2025-09-08T22:16:21,237 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-08T22:16:21,237 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,237 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,237 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-08T22:16:21,237 to the `packages` configuration field. 2025-09-08T22:16:21,237 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,237 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,238 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,238 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,238 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,238 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-08T22:16:21,238 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-08T22:16:21,238 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,238 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,238 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,239 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,239 even if it does not contain any `.py` files. 2025-09-08T22:16:21,239 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,239 directory, all directories are treated like packages. 2025-09-08T22:16:21,239 ******************************************************************************** 2025-09-08T22:16:21,239 !! 2025-09-08T22:16:21,239 check.warn(importable) 2025-09-08T22:16:21,240 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,240 !! 2025-09-08T22:16:21,240 ******************************************************************************** 2025-09-08T22:16:21,240 ############################ 2025-09-08T22:16:21,240 # Package would be ignored # 2025-09-08T22:16:21,240 ############################ 2025-09-08T22:16:21,240 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-08T22:16:21,240 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,240 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,240 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-08T22:16:21,241 to the `packages` configuration field. 2025-09-08T22:16:21,241 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,241 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,241 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,241 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,241 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,241 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-08T22:16:21,241 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-08T22:16:21,242 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,242 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,242 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,242 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,242 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,242 even if it does not contain any `.py` files. 2025-09-08T22:16:21,242 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,242 directory, all directories are treated like packages. 2025-09-08T22:16:21,243 ******************************************************************************** 2025-09-08T22:16:21,243 !! 2025-09-08T22:16:21,243 check.warn(importable) 2025-09-08T22:16:21,243 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,243 !! 2025-09-08T22:16:21,243 ******************************************************************************** 2025-09-08T22:16:21,243 ############################ 2025-09-08T22:16:21,243 # Package would be ignored # 2025-09-08T22:16:21,243 ############################ 2025-09-08T22:16:21,243 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,244 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,244 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,244 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,244 to the `packages` configuration field. 2025-09-08T22:16:21,244 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,244 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,244 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,244 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,245 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,245 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-08T22:16:21,245 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,245 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,245 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,246 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,246 even if it does not contain any `.py` files. 2025-09-08T22:16:21,246 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,246 directory, all directories are treated like packages. 2025-09-08T22:16:21,246 ******************************************************************************** 2025-09-08T22:16:21,246 !! 2025-09-08T22:16:21,246 check.warn(importable) 2025-09-08T22:16:21,246 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-08T22:16:21,246 !! 2025-09-08T22:16:21,247 ******************************************************************************** 2025-09-08T22:16:21,247 ############################ 2025-09-08T22:16:21,247 # Package would be ignored # 2025-09-08T22:16:21,247 ############################ 2025-09-08T22:16:21,247 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-08T22:16:21,247 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,247 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,247 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-08T22:16:21,247 to the `packages` configuration field. 2025-09-08T22:16:21,248 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,248 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,248 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,248 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-08T22:16:21,248 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-08T22:16:21,248 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,249 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,249 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,249 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,249 even if it does not contain any `.py` files. 2025-09-08T22:16:21,249 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,249 directory, all directories are treated like packages. 2025-09-08T22:16:21,250 ******************************************************************************** 2025-09-08T22:16:21,250 !! 2025-09-08T22:16:21,250 check.warn(importable) 2025-09-08T22:16:21,250 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,250 !! 2025-09-08T22:16:21,250 ******************************************************************************** 2025-09-08T22:16:21,250 ############################ 2025-09-08T22:16:21,250 # Package would be ignored # 2025-09-08T22:16:21,250 ############################ 2025-09-08T22:16:21,250 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-08T22:16:21,250 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,251 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,251 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-08T22:16:21,251 to the `packages` configuration field. 2025-09-08T22:16:21,251 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,251 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,251 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,252 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-08T22:16:21,252 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-08T22:16:21,252 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,252 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,252 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,252 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,253 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,253 even if it does not contain any `.py` files. 2025-09-08T22:16:21,253 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,253 directory, all directories are treated like packages. 2025-09-08T22:16:21,253 ******************************************************************************** 2025-09-08T22:16:21,253 !! 2025-09-08T22:16:21,253 check.warn(importable) 2025-09-08T22:16:21,253 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,253 !! 2025-09-08T22:16:21,254 ******************************************************************************** 2025-09-08T22:16:21,254 ############################ 2025-09-08T22:16:21,254 # Package would be ignored # 2025-09-08T22:16:21,254 ############################ 2025-09-08T22:16:21,254 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,254 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,254 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,254 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-08T22:16:21,254 to the `packages` configuration field. 2025-09-08T22:16:21,254 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,255 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,255 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,255 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,255 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,255 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-08T22:16:21,255 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-08T22:16:21,255 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,255 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,255 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,256 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,256 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,256 even if it does not contain any `.py` files. 2025-09-08T22:16:21,256 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,256 directory, all directories are treated like packages. 2025-09-08T22:16:21,256 ******************************************************************************** 2025-09-08T22:16:21,256 !! 2025-09-08T22:16:21,257 check.warn(importable) 2025-09-08T22:16:21,257 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,257 !! 2025-09-08T22:16:21,257 ******************************************************************************** 2025-09-08T22:16:21,257 ############################ 2025-09-08T22:16:21,257 # Package would be ignored # 2025-09-08T22:16:21,257 ############################ 2025-09-08T22:16:21,257 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-08T22:16:21,257 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,257 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,258 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-08T22:16:21,258 to the `packages` configuration field. 2025-09-08T22:16:21,258 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,258 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,258 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,258 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,258 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-08T22:16:21,259 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-08T22:16:21,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,259 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,259 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,259 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,259 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,260 even if it does not contain any `.py` files. 2025-09-08T22:16:21,260 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,260 directory, all directories are treated like packages. 2025-09-08T22:16:21,260 ******************************************************************************** 2025-09-08T22:16:21,260 !! 2025-09-08T22:16:21,260 check.warn(importable) 2025-09-08T22:16:21,260 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-08T22:16:21,260 !! 2025-09-08T22:16:21,260 ******************************************************************************** 2025-09-08T22:16:21,260 ############################ 2025-09-08T22:16:21,261 # Package would be ignored # 2025-09-08T22:16:21,261 ############################ 2025-09-08T22:16:21,261 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-08T22:16:21,261 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,261 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,261 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-08T22:16:21,261 to the `packages` configuration field. 2025-09-08T22:16:21,261 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,262 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,262 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,262 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,262 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-08T22:16:21,262 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-08T22:16:21,262 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,262 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,262 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,263 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,263 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,263 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,263 even if it does not contain any `.py` files. 2025-09-08T22:16:21,263 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,263 directory, all directories are treated like packages. 2025-09-08T22:16:21,263 ******************************************************************************** 2025-09-08T22:16:21,263 !! 2025-09-08T22:16:21,263 check.warn(importable) 2025-09-08T22:16:21,264 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-08T22:16:21,264 !! 2025-09-08T22:16:21,264 ******************************************************************************** 2025-09-08T22:16:21,264 ############################ 2025-09-08T22:16:21,264 # Package would be ignored # 2025-09-08T22:16:21,264 ############################ 2025-09-08T22:16:21,264 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-08T22:16:21,264 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,264 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,264 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-08T22:16:21,265 to the `packages` configuration field. 2025-09-08T22:16:21,265 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,265 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,265 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,265 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,265 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,265 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-08T22:16:21,265 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-08T22:16:21,266 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,266 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,266 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,266 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,266 even if it does not contain any `.py` files. 2025-09-08T22:16:21,266 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,266 directory, all directories are treated like packages. 2025-09-08T22:16:21,267 ******************************************************************************** 2025-09-08T22:16:21,267 !! 2025-09-08T22:16:21,267 check.warn(importable) 2025-09-08T22:16:21,267 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-08T22:16:21,267 !! 2025-09-08T22:16:21,267 ******************************************************************************** 2025-09-08T22:16:21,267 ############################ 2025-09-08T22:16:21,267 # Package would be ignored # 2025-09-08T22:16:21,267 ############################ 2025-09-08T22:16:21,267 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-08T22:16:21,268 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,268 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,268 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-08T22:16:21,268 to the `packages` configuration field. 2025-09-08T22:16:21,268 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,268 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,268 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,268 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,269 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-08T22:16:21,269 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-08T22:16:21,269 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,269 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,269 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,270 even if it does not contain any `.py` files. 2025-09-08T22:16:21,270 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,270 directory, all directories are treated like packages. 2025-09-08T22:16:21,270 ******************************************************************************** 2025-09-08T22:16:21,270 !! 2025-09-08T22:16:21,270 check.warn(importable) 2025-09-08T22:16:21,270 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,270 !! 2025-09-08T22:16:21,271 ******************************************************************************** 2025-09-08T22:16:21,271 ############################ 2025-09-08T22:16:21,271 # Package would be ignored # 2025-09-08T22:16:21,271 ############################ 2025-09-08T22:16:21,271 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,271 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,271 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,271 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-08T22:16:21,271 to the `packages` configuration field. 2025-09-08T22:16:21,271 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,272 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,272 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,272 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,272 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,272 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-08T22:16:21,272 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-08T22:16:21,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,273 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,273 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,273 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,273 even if it does not contain any `.py` files. 2025-09-08T22:16:21,273 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,273 directory, all directories are treated like packages. 2025-09-08T22:16:21,273 ******************************************************************************** 2025-09-08T22:16:21,274 !! 2025-09-08T22:16:21,274 check.warn(importable) 2025-09-08T22:16:21,274 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:16:21,274 !! 2025-09-08T22:16:21,274 ******************************************************************************** 2025-09-08T22:16:21,274 ############################ 2025-09-08T22:16:21,274 # Package would be ignored # 2025-09-08T22:16:21,274 ############################ 2025-09-08T22:16:21,274 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-08T22:16:21,274 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,275 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,275 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-08T22:16:21,275 to the `packages` configuration field. 2025-09-08T22:16:21,275 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,275 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,275 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,275 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,276 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-08T22:16:21,276 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-08T22:16:21,276 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,276 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,276 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,276 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,276 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,277 even if it does not contain any `.py` files. 2025-09-08T22:16:21,277 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,277 directory, all directories are treated like packages. 2025-09-08T22:16:21,277 ******************************************************************************** 2025-09-08T22:16:21,277 !! 2025-09-08T22:16:21,277 check.warn(importable) 2025-09-08T22:16:21,277 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:16:21,277 !! 2025-09-08T22:16:21,277 ******************************************************************************** 2025-09-08T22:16:21,277 ############################ 2025-09-08T22:16:21,278 # Package would be ignored # 2025-09-08T22:16:21,278 ############################ 2025-09-08T22:16:21,278 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-08T22:16:21,278 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,278 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,278 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-08T22:16:21,278 to the `packages` configuration field. 2025-09-08T22:16:21,278 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,278 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,279 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,279 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-08T22:16:21,279 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-08T22:16:21,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,279 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,279 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,279 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,280 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,280 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,280 even if it does not contain any `.py` files. 2025-09-08T22:16:21,280 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,280 directory, all directories are treated like packages. 2025-09-08T22:16:21,280 ******************************************************************************** 2025-09-08T22:16:21,280 !! 2025-09-08T22:16:21,280 check.warn(importable) 2025-09-08T22:16:21,281 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:16:21,281 !! 2025-09-08T22:16:21,281 ******************************************************************************** 2025-09-08T22:16:21,281 ############################ 2025-09-08T22:16:21,281 # Package would be ignored # 2025-09-08T22:16:21,281 ############################ 2025-09-08T22:16:21,281 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-08T22:16:21,281 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,281 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,281 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-08T22:16:21,281 to the `packages` configuration field. 2025-09-08T22:16:21,282 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,282 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,282 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,282 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-08T22:16:21,282 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-08T22:16:21,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,283 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,283 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,283 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,283 even if it does not contain any `.py` files. 2025-09-08T22:16:21,283 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,283 directory, all directories are treated like packages. 2025-09-08T22:16:21,284 ******************************************************************************** 2025-09-08T22:16:21,284 !! 2025-09-08T22:16:21,284 check.warn(importable) 2025-09-08T22:16:21,284 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-08T22:16:21,284 !! 2025-09-08T22:16:21,284 ******************************************************************************** 2025-09-08T22:16:21,284 ############################ 2025-09-08T22:16:21,284 # Package would be ignored # 2025-09-08T22:16:21,284 ############################ 2025-09-08T22:16:21,285 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-08T22:16:21,285 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,285 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,285 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-08T22:16:21,285 to the `packages` configuration field. 2025-09-08T22:16:21,285 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,285 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,286 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,286 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,286 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-08T22:16:21,286 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-08T22:16:21,286 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,286 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,286 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,286 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,287 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,287 even if it does not contain any `.py` files. 2025-09-08T22:16:21,287 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,287 directory, all directories are treated like packages. 2025-09-08T22:16:21,287 ******************************************************************************** 2025-09-08T22:16:21,287 !! 2025-09-08T22:16:21,288 check.warn(importable) 2025-09-08T22:16:21,288 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-08T22:16:21,288 !! 2025-09-08T22:16:21,288 ******************************************************************************** 2025-09-08T22:16:21,288 ############################ 2025-09-08T22:16:21,288 # Package would be ignored # 2025-09-08T22:16:21,288 ############################ 2025-09-08T22:16:21,288 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-08T22:16:21,288 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,289 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,289 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-08T22:16:21,289 to the `packages` configuration field. 2025-09-08T22:16:21,289 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,289 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,289 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,289 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,289 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,290 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-08T22:16:21,290 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-08T22:16:21,290 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,290 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,290 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,290 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,291 even if it does not contain any `.py` files. 2025-09-08T22:16:21,291 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,291 directory, all directories are treated like packages. 2025-09-08T22:16:21,291 ******************************************************************************** 2025-09-08T22:16:21,291 !! 2025-09-08T22:16:21,291 check.warn(importable) 2025-09-08T22:16:21,291 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-08T22:16:21,291 !! 2025-09-08T22:16:21,291 ******************************************************************************** 2025-09-08T22:16:21,292 ############################ 2025-09-08T22:16:21,292 # Package would be ignored # 2025-09-08T22:16:21,292 ############################ 2025-09-08T22:16:21,292 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-08T22:16:21,292 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,292 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,292 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-08T22:16:21,292 to the `packages` configuration field. 2025-09-08T22:16:21,292 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,293 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,293 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,293 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,293 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,293 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-08T22:16:21,293 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-08T22:16:21,293 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,293 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,294 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,294 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,294 even if it does not contain any `.py` files. 2025-09-08T22:16:21,294 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,294 directory, all directories are treated like packages. 2025-09-08T22:16:21,294 ******************************************************************************** 2025-09-08T22:16:21,295 !! 2025-09-08T22:16:21,295 check.warn(importable) 2025-09-08T22:16:21,295 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-08T22:16:21,295 !! 2025-09-08T22:16:21,295 ******************************************************************************** 2025-09-08T22:16:21,295 ############################ 2025-09-08T22:16:21,295 # Package would be ignored # 2025-09-08T22:16:21,295 ############################ 2025-09-08T22:16:21,295 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-08T22:16:21,295 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,296 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,296 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-08T22:16:21,296 to the `packages` configuration field. 2025-09-08T22:16:21,296 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,296 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,296 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,297 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-08T22:16:21,297 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-08T22:16:21,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,297 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,297 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,297 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,298 even if it does not contain any `.py` files. 2025-09-08T22:16:21,298 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,298 directory, all directories are treated like packages. 2025-09-08T22:16:21,298 ******************************************************************************** 2025-09-08T22:16:21,298 !! 2025-09-08T22:16:21,298 check.warn(importable) 2025-09-08T22:16:21,298 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,298 !! 2025-09-08T22:16:21,299 ******************************************************************************** 2025-09-08T22:16:21,299 ############################ 2025-09-08T22:16:21,299 # Package would be ignored # 2025-09-08T22:16:21,299 ############################ 2025-09-08T22:16:21,299 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,299 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,299 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,299 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-08T22:16:21,299 to the `packages` configuration field. 2025-09-08T22:16:21,300 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,300 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,300 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,300 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-08T22:16:21,300 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-08T22:16:21,300 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,300 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,301 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,301 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,301 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,301 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,301 even if it does not contain any `.py` files. 2025-09-08T22:16:21,301 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,301 directory, all directories are treated like packages. 2025-09-08T22:16:21,301 ******************************************************************************** 2025-09-08T22:16:21,302 !! 2025-09-08T22:16:21,302 check.warn(importable) 2025-09-08T22:16:21,302 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-08T22:16:21,302 !! 2025-09-08T22:16:21,302 ******************************************************************************** 2025-09-08T22:16:21,302 ############################ 2025-09-08T22:16:21,302 # Package would be ignored # 2025-09-08T22:16:21,302 ############################ 2025-09-08T22:16:21,302 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-08T22:16:21,302 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,303 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,303 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-08T22:16:21,303 to the `packages` configuration field. 2025-09-08T22:16:21,303 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,303 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,303 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,303 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,304 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-08T22:16:21,304 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-08T22:16:21,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,304 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,304 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,305 even if it does not contain any `.py` files. 2025-09-08T22:16:21,305 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,305 directory, all directories are treated like packages. 2025-09-08T22:16:21,305 ******************************************************************************** 2025-09-08T22:16:21,305 !! 2025-09-08T22:16:21,305 check.warn(importable) 2025-09-08T22:16:21,305 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:16:21,305 !! 2025-09-08T22:16:21,305 ******************************************************************************** 2025-09-08T22:16:21,306 ############################ 2025-09-08T22:16:21,306 # Package would be ignored # 2025-09-08T22:16:21,306 ############################ 2025-09-08T22:16:21,306 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-08T22:16:21,306 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,306 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,306 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-08T22:16:21,306 to the `packages` configuration field. 2025-09-08T22:16:21,306 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,306 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,307 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,307 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,307 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,307 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-08T22:16:21,307 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-08T22:16:21,307 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,307 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,308 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,308 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,308 even if it does not contain any `.py` files. 2025-09-08T22:16:21,308 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,308 directory, all directories are treated like packages. 2025-09-08T22:16:21,308 ******************************************************************************** 2025-09-08T22:16:21,309 !! 2025-09-08T22:16:21,309 check.warn(importable) 2025-09-08T22:16:21,309 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-08T22:16:21,309 !! 2025-09-08T22:16:21,309 ******************************************************************************** 2025-09-08T22:16:21,309 ############################ 2025-09-08T22:16:21,309 # Package would be ignored # 2025-09-08T22:16:21,309 ############################ 2025-09-08T22:16:21,309 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-08T22:16:21,309 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,310 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,310 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-08T22:16:21,310 to the `packages` configuration field. 2025-09-08T22:16:21,310 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,310 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,310 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,310 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,310 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,311 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-08T22:16:21,311 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-08T22:16:21,311 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,311 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,311 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,311 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,311 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,312 even if it does not contain any `.py` files. 2025-09-08T22:16:21,312 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,312 directory, all directories are treated like packages. 2025-09-08T22:16:21,312 ******************************************************************************** 2025-09-08T22:16:21,312 !! 2025-09-08T22:16:21,312 check.warn(importable) 2025-09-08T22:16:21,312 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,312 !! 2025-09-08T22:16:21,313 ******************************************************************************** 2025-09-08T22:16:21,313 ############################ 2025-09-08T22:16:21,313 # Package would be ignored # 2025-09-08T22:16:21,313 ############################ 2025-09-08T22:16:21,313 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-08T22:16:21,313 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,313 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,313 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-08T22:16:21,313 to the `packages` configuration field. 2025-09-08T22:16:21,313 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,314 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,314 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,314 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,314 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-08T22:16:21,314 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-08T22:16:21,314 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,314 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,314 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,315 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,315 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,315 even if it does not contain any `.py` files. 2025-09-08T22:16:21,315 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,315 directory, all directories are treated like packages. 2025-09-08T22:16:21,315 ******************************************************************************** 2025-09-08T22:16:21,316 !! 2025-09-08T22:16:21,316 check.warn(importable) 2025-09-08T22:16:21,316 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-08T22:16:21,316 !! 2025-09-08T22:16:21,316 ******************************************************************************** 2025-09-08T22:16:21,316 ############################ 2025-09-08T22:16:21,316 # Package would be ignored # 2025-09-08T22:16:21,316 ############################ 2025-09-08T22:16:21,316 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-08T22:16:21,316 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,317 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,317 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-08T22:16:21,317 to the `packages` configuration field. 2025-09-08T22:16:21,317 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,317 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,317 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,317 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,318 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-08T22:16:21,318 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-08T22:16:21,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,318 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,318 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,318 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,318 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,318 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,319 even if it does not contain any `.py` files. 2025-09-08T22:16:21,319 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,319 directory, all directories are treated like packages. 2025-09-08T22:16:21,319 ******************************************************************************** 2025-09-08T22:16:21,319 !! 2025-09-08T22:16:21,319 check.warn(importable) 2025-09-08T22:16:21,319 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,319 !! 2025-09-08T22:16:21,319 ******************************************************************************** 2025-09-08T22:16:21,319 ############################ 2025-09-08T22:16:21,320 # Package would be ignored # 2025-09-08T22:16:21,320 ############################ 2025-09-08T22:16:21,320 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-08T22:16:21,320 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,320 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,320 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-08T22:16:21,320 to the `packages` configuration field. 2025-09-08T22:16:21,320 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,320 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,321 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,321 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-08T22:16:21,321 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-08T22:16:21,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,321 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,321 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,322 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,322 even if it does not contain any `.py` files. 2025-09-08T22:16:21,322 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,322 directory, all directories are treated like packages. 2025-09-08T22:16:21,322 ******************************************************************************** 2025-09-08T22:16:21,322 !! 2025-09-08T22:16:21,322 check.warn(importable) 2025-09-08T22:16:21,323 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,323 !! 2025-09-08T22:16:21,323 ******************************************************************************** 2025-09-08T22:16:21,323 ############################ 2025-09-08T22:16:21,323 # Package would be ignored # 2025-09-08T22:16:21,323 ############################ 2025-09-08T22:16:21,323 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-08T22:16:21,323 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,323 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,324 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-08T22:16:21,324 to the `packages` configuration field. 2025-09-08T22:16:21,324 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,324 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,324 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,324 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,325 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-08T22:16:21,325 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-08T22:16:21,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,325 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,325 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,326 even if it does not contain any `.py` files. 2025-09-08T22:16:21,326 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,326 directory, all directories are treated like packages. 2025-09-08T22:16:21,326 ******************************************************************************** 2025-09-08T22:16:21,326 !! 2025-09-08T22:16:21,326 check.warn(importable) 2025-09-08T22:16:21,326 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,326 !! 2025-09-08T22:16:21,326 ******************************************************************************** 2025-09-08T22:16:21,327 ############################ 2025-09-08T22:16:21,327 # Package would be ignored # 2025-09-08T22:16:21,327 ############################ 2025-09-08T22:16:21,327 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-08T22:16:21,327 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,327 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,327 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-08T22:16:21,327 to the `packages` configuration field. 2025-09-08T22:16:21,327 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,328 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,328 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,328 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,328 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-08T22:16:21,328 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-08T22:16:21,328 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,328 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,328 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,329 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,329 even if it does not contain any `.py` files. 2025-09-08T22:16:21,329 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,329 directory, all directories are treated like packages. 2025-09-08T22:16:21,329 ******************************************************************************** 2025-09-08T22:16:21,330 !! 2025-09-08T22:16:21,330 check.warn(importable) 2025-09-08T22:16:21,330 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,330 !! 2025-09-08T22:16:21,330 ******************************************************************************** 2025-09-08T22:16:21,330 ############################ 2025-09-08T22:16:21,330 # Package would be ignored # 2025-09-08T22:16:21,330 ############################ 2025-09-08T22:16:21,330 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-08T22:16:21,330 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,331 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,331 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-08T22:16:21,331 to the `packages` configuration field. 2025-09-08T22:16:21,331 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,331 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,331 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,332 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-08T22:16:21,332 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-08T22:16:21,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,332 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,332 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,332 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,333 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,333 even if it does not contain any `.py` files. 2025-09-08T22:16:21,333 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,333 directory, all directories are treated like packages. 2025-09-08T22:16:21,333 ******************************************************************************** 2025-09-08T22:16:21,333 !! 2025-09-08T22:16:21,333 check.warn(importable) 2025-09-08T22:16:21,333 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,333 !! 2025-09-08T22:16:21,334 ******************************************************************************** 2025-09-08T22:16:21,334 ############################ 2025-09-08T22:16:21,334 # Package would be ignored # 2025-09-08T22:16:21,334 ############################ 2025-09-08T22:16:21,334 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-08T22:16:21,334 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,334 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,334 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-08T22:16:21,334 to the `packages` configuration field. 2025-09-08T22:16:21,335 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,335 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,335 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,335 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-08T22:16:21,335 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-08T22:16:21,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,336 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,336 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,336 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,336 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,336 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,337 even if it does not contain any `.py` files. 2025-09-08T22:16:21,337 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,337 directory, all directories are treated like packages. 2025-09-08T22:16:21,337 ******************************************************************************** 2025-09-08T22:16:21,337 !! 2025-09-08T22:16:21,337 check.warn(importable) 2025-09-08T22:16:21,337 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,337 !! 2025-09-08T22:16:21,337 ******************************************************************************** 2025-09-08T22:16:21,338 ############################ 2025-09-08T22:16:21,338 # Package would be ignored # 2025-09-08T22:16:21,338 ############################ 2025-09-08T22:16:21,338 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-08T22:16:21,338 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,338 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,338 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-08T22:16:21,338 to the `packages` configuration field. 2025-09-08T22:16:21,338 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,339 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,339 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,339 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,339 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-08T22:16:21,339 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-08T22:16:21,339 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,340 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,340 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,340 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,340 even if it does not contain any `.py` files. 2025-09-08T22:16:21,340 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,340 directory, all directories are treated like packages. 2025-09-08T22:16:21,340 ******************************************************************************** 2025-09-08T22:16:21,341 !! 2025-09-08T22:16:21,341 check.warn(importable) 2025-09-08T22:16:21,341 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,341 !! 2025-09-08T22:16:21,341 ******************************************************************************** 2025-09-08T22:16:21,341 ############################ 2025-09-08T22:16:21,341 # Package would be ignored # 2025-09-08T22:16:21,341 ############################ 2025-09-08T22:16:21,341 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-08T22:16:21,342 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,342 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,342 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-08T22:16:21,342 to the `packages` configuration field. 2025-09-08T22:16:21,342 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,342 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,342 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,343 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,343 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-08T22:16:21,343 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-08T22:16:21,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,343 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,343 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,344 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,344 even if it does not contain any `.py` files. 2025-09-08T22:16:21,344 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,344 directory, all directories are treated like packages. 2025-09-08T22:16:21,344 ******************************************************************************** 2025-09-08T22:16:21,344 !! 2025-09-08T22:16:21,344 check.warn(importable) 2025-09-08T22:16:21,344 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-08T22:16:21,345 !! 2025-09-08T22:16:21,345 ******************************************************************************** 2025-09-08T22:16:21,345 ############################ 2025-09-08T22:16:21,345 # Package would be ignored # 2025-09-08T22:16:21,345 ############################ 2025-09-08T22:16:21,345 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-08T22:16:21,345 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:16:21,345 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:16:21,345 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-08T22:16:21,345 to the `packages` configuration field. 2025-09-08T22:16:21,346 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:16:21,346 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:16:21,346 instead of `find_packages(...)`/`find:`). 2025-09-08T22:16:21,346 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:16:21,346 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:16:21,346 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-08T22:16:21,346 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-08T22:16:21,347 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:16:21,347 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:16:21,347 combination with a more fine grained `package-data` configuration. 2025-09-08T22:16:21,347 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:16:21,347 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:16:21,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:16:21,347 even if it does not contain any `.py` files. 2025-09-08T22:16:21,348 On the other hand, currently there is no concept of package data 2025-09-08T22:16:21,348 directory, all directories are treated like packages. 2025-09-08T22:16:21,348 ******************************************************************************** 2025-09-08T22:16:21,348 !! 2025-09-08T22:16:21,348 check.warn(importable) 2025-09-08T22:16:21,348 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T22:16:21,348 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T22:16:21,348 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:16:21,348 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:16:21,348 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:16:21,349 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:16:21,349 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,349 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:16:21,350 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:16:21,351 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:16:21,351 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:16:21,352 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,353 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,353 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,357 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,358 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,359 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,359 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,360 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,360 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:16:21,361 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,361 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,362 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,362 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,363 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,363 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:16:21,364 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:16:21,364 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:16:21,365 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:16:21,365 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:16:21,366 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:16:21,366 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,367 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,367 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,368 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,369 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,369 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,370 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,371 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,371 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,372 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,372 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,373 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,373 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,374 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,374 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:16:21,375 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:16:21,375 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:16:21,375 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:16:21,376 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,376 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,377 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,378 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,378 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,379 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,380 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,380 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,381 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,382 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,382 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:16:21,383 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,383 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,383 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,384 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,384 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,385 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,386 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,386 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,387 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,387 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,388 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,389 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,389 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,390 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,390 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,391 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,391 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:16:21,392 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:16:21,392 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:16:21,393 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:16:21,393 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:16:21,393 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:16:21,394 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:16:21,394 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:16:21,395 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:16:21,395 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:16:21,396 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:16:21,396 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:16:21,396 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:16:21,397 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:16:21,397 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:16:21,398 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:16:21,399 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,399 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,399 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,400 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,401 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,402 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,402 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,403 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,404 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,404 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:16:21,405 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:16:21,405 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:16:21,406 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:16:21,406 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:16:21,407 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:16:21,407 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:16:21,407 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:16:21,408 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:16:21,408 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,409 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,409 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,410 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,411 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,411 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,412 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,413 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,414 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,414 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,415 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:16:21,415 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:16:21,415 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:16:21,416 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:16:21,416 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:16:21,417 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:16:21,418 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:16:21,418 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:16:21,419 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:16:21,419 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,419 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,420 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,421 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,422 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,422 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,423 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,423 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,424 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,425 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,425 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:16:21,426 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,426 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,426 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,427 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,428 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,428 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,429 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,429 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,430 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,430 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,431 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,431 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,432 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,433 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,433 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,434 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,434 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:16:21,435 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:16:21,435 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:16:21,435 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:16:21,436 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:16:21,436 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:16:21,437 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:16:21,437 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:16:21,438 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:16:21,438 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:16:21,439 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:16:21,439 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:16:21,440 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:16:21,440 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:16:21,440 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:16:21,441 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:16:21,441 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,442 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,442 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,443 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,444 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,444 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,445 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,446 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,447 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,447 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,448 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:16:21,448 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:16:21,448 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:16:21,449 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:16:21,449 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:16:21,450 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:16:21,451 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:16:21,451 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:16:21,451 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:16:21,452 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,452 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,453 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,454 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,455 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,456 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,456 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,458 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,459 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,459 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:16:21,460 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:16:21,460 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:16:21,460 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:16:21,461 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:16:21,462 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:16:21,462 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:16:21,462 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:16:21,463 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:16:21,463 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,464 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,464 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,466 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,466 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,467 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,468 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,470 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,470 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,471 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,476 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:16:21,476 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:16:21,476 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:16:21,477 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:16:21,478 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:16:21,478 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:16:21,479 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:16:21,479 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:16:21,480 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:16:21,480 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,480 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,481 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,482 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,483 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,483 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,484 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,484 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,485 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,486 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,486 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:16:21,487 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,487 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,488 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,488 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,489 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,489 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,490 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,490 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,491 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,492 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,492 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,493 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,493 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,494 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,494 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,495 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,495 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:16:21,496 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:16:21,496 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:16:21,497 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:16:21,497 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:16:21,498 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:16:21,498 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:16:21,499 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:16:21,499 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:16:21,500 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:16:21,500 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:16:21,500 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:16:21,501 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:16:21,501 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:16:21,502 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:16:21,502 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:16:21,503 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,503 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,504 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,505 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,505 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,506 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,506 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,508 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,508 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,509 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,509 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:16:21,510 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:16:21,510 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:16:21,510 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:16:21,511 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:16:21,511 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:16:21,512 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:16:21,512 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:16:21,513 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:16:21,513 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:16:21,514 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,514 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,515 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,516 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,516 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,517 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,517 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,518 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,519 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,520 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,520 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:16:21,521 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:16:21,521 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:16:21,521 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:16:21,522 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:16:21,522 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:16:21,523 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:16:21,523 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:16:21,524 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:16:21,524 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,524 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,525 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,526 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,527 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,527 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,528 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,529 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,530 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,530 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,531 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:16:21,531 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:16:21,531 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:16:21,532 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:16:21,532 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:16:21,533 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:16:21,534 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:16:21,534 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:16:21,534 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:16:21,535 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:16:21,535 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,536 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,536 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,537 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,538 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,538 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,539 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,540 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,541 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,541 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,542 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:16:21,542 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:16:21,543 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:16:21,543 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:16:21,544 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:16:21,544 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:16:21,545 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:16:21,545 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:16:21,546 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:16:21,546 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,546 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,547 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,548 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,549 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,549 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,550 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,550 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,551 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,552 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,553 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:16:21,553 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:16:21,553 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:16:21,554 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:16:21,554 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:16:21,555 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:16:21,555 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:16:21,556 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:16:21,556 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:16:21,557 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,557 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,558 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,559 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,559 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,560 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,560 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,561 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,562 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,562 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:16:21,563 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:16:21,563 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:16:21,564 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:16:21,564 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:16:21,565 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:16:21,565 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:16:21,566 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:16:21,566 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:16:21,567 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,567 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,568 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,569 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,569 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,570 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,570 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,571 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,572 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,573 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,573 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:16:21,574 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:16:21,574 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:16:21,574 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:16:21,575 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:16:21,575 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:16:21,576 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:16:21,576 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:16:21,577 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:16:21,577 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,577 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,578 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,579 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,580 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,582 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,582 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,583 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,583 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,585 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,585 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,586 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:16:21,587 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:16:21,587 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:16:21,587 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:16:21,588 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:16:21,588 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:16:21,589 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:16:21,589 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:16:21,590 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:16:21,590 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,591 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,591 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,592 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,593 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,593 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,594 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,595 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,595 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,596 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,597 copying lightdock/test/bin/golden_data/regression_pydock_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:16:21,597 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:16:21,597 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:16:21,598 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:16:21,599 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:16:21,599 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:16:21,600 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:16:21,600 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:16:21,600 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:16:21,601 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:16:21,601 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,602 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,602 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,603 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,604 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,606 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,606 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,607 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,607 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,608 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:16:21,608 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:16:21,609 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:16:21,609 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:16:21,610 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:16:21,610 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:16:21,611 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:16:21,611 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:16:21,612 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:16:21,612 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,612 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,613 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,614 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,615 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,615 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,616 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,617 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,618 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,620 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:16:21,620 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,621 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,621 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,622 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,622 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,623 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,623 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,624 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,624 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,625 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,625 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,626 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,627 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,627 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,628 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,628 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,629 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:16:21,629 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,629 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,632 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,635 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,636 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,638 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,638 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,640 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:16:21,641 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,641 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,641 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,642 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,642 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,643 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,643 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,644 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,645 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,645 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,646 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,646 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,647 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,647 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,648 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,648 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,649 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,649 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,650 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,650 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,651 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,651 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,652 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,652 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,653 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,653 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,654 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,654 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,655 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,655 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,656 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,656 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,657 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,658 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,658 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,659 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,659 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,660 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,660 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,661 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,661 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,662 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,662 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,663 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:16:21,663 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,664 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,666 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,669 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,670 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,672 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,672 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,674 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,675 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:16:21,675 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,675 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,676 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,676 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,677 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,678 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,678 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,679 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,679 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,680 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,680 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,681 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,681 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,682 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,682 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,683 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,683 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,684 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,684 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,685 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,685 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,686 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,687 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,687 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,688 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,688 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,689 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,689 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,690 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,690 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,691 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,691 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,692 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,692 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,693 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,693 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,694 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,694 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:16:21,695 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,695 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,696 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,697 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,697 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,698 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,699 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,700 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,700 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,702 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,703 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:16:21,703 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,704 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,704 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,705 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,705 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,706 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,706 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,707 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:16:21,707 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,708 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,711 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,712 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,713 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,714 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,714 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,715 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,715 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,716 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,717 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:16:21,718 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:16:21,718 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:16:21,718 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:16:21,719 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:16:21,720 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:16:21,721 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:16:21,721 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:16:21,721 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:16:21,722 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,722 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,723 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,724 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,724 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,725 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,726 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,727 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,727 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,728 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:16:21,728 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:16:21,728 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:16:21,729 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:16:21,729 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:16:21,730 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:16:21,731 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:16:21,731 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:16:21,731 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:16:21,732 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,732 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,736 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,736 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,738 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,738 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,739 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,739 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,740 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,741 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,741 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:16:21,742 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:16:21,742 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:16:21,743 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:16:21,743 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:16:21,744 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:16:21,745 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:16:21,745 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:16:21,746 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:16:21,746 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:16:21,746 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:16:21,747 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:16:21,748 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:16:21,748 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:16:21,749 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:16:21,750 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:16:21,768 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:16:21,789 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:16:21,791 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:16:21,791 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:16:21,793 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:16:21,794 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,794 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,796 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,796 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,797 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,798 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,799 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,800 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,800 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,801 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,804 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,805 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,806 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,806 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,807 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,808 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,809 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,809 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,810 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,810 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:16:21,811 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:16:21,811 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:16:21,812 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:16:21,813 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:16:21,815 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,815 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,816 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,816 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,817 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,817 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,818 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,819 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,819 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,820 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,820 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,821 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,822 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,822 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:16:21,823 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:16:21,823 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:16:21,823 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:16:21,824 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:16:21,824 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:16:21,825 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:16:21,825 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:16:21,826 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:16:21,826 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:16:21,827 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:16:21,827 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:16:21,828 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:16:21,829 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:16:21,829 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:16:21,829 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:16:21,830 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:16:21,831 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,831 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,831 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,832 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,832 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,834 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,835 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,836 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,837 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,838 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,840 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,841 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,842 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,843 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:16:21,844 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:16:21,844 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:16:21,845 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:16:21,846 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:16:21,846 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:16:21,846 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:16:21,848 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:16:21,850 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,850 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,851 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,851 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,852 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,854 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,855 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,857 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,859 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,860 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,862 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,864 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,865 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,867 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,869 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,870 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,872 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,874 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,875 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,877 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,879 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,880 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,882 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,884 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,885 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,887 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,889 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,890 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,892 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,894 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,895 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,897 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,899 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,900 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,902 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,904 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,905 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,907 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,909 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,910 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,912 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,914 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,915 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,917 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,919 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,920 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,922 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,924 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,925 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,927 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,929 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,930 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,932 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,934 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:16:21,935 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,936 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,936 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,937 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,938 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,939 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,941 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,942 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,944 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,946 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,948 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,949 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,951 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,952 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,954 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,956 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,958 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,959 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,961 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,962 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,964 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,966 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,967 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,969 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,971 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,972 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,974 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,976 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,977 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,979 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,981 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,982 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,984 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,986 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,987 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,989 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,991 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,992 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,994 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,996 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,997 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:21,999 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,001 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,002 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,004 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,006 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,007 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,009 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,011 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,012 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,014 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,016 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,017 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,019 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:16:22,021 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,021 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,022 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,022 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,023 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,024 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,026 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,028 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,029 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,031 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,033 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,034 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,036 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,038 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,039 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,041 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,043 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,044 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,046 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,048 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,049 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,051 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,053 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,054 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,056 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,058 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,059 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,061 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,063 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,064 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,066 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,068 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,069 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,071 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,073 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,074 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,076 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,078 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,079 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,081 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,083 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,084 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,086 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,088 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,089 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,091 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,093 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,094 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,096 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,098 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,099 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,101 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,103 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,104 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:16:22,106 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,106 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,107 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,107 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,108 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,110 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,111 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,113 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,115 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,116 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,118 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,120 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,121 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,123 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,125 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,126 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,128 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,130 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,131 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,133 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,134 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,136 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,138 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,140 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,141 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,143 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,145 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,146 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,148 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,150 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,151 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,153 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,155 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,156 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,158 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,160 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,161 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,163 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,165 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,166 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,168 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,170 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,171 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,173 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,175 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,176 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,178 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,180 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,181 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,183 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,185 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,186 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,188 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,190 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:16:22,191 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,192 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,192 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,193 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,194 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,195 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,196 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,197 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:16:22,198 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:16:22,198 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:16:22,199 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:16:22,199 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,199 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,201 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,202 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,203 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,204 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,205 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,208 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,209 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,209 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,211 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,213 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,214 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,216 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,218 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,219 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,221 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,223 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,224 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:16:22,226 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,226 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,228 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,228 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,230 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,233 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:16:22,233 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:16:22,233 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:16:22,234 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:16:22,235 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:16:22,236 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:16:22,238 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,239 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,239 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,240 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,240 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,241 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,242 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,243 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,243 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,244 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,245 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,245 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,246 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,247 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,247 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,248 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,249 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,249 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:16:22,250 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:16:22,250 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:16:22,251 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:16:22,251 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:16:22,252 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:16:22,252 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:16:22,253 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:16:22,253 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:16:22,254 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:16:22,254 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:16:22,255 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T22:16:22,255 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T22:16:22,256 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T22:16:22,256 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T22:16:22,256 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T22:16:22,257 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T22:16:22,281 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:16:22,281 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:16:22,306 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:16:22,322 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T22:16:22,322 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T22:16:22,346 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:16:22,347 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:16:22,347 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:16:22,348 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:16:22,349 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:16:22,350 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:16:22,350 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:16:22,351 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:16:22,352 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:16:22,353 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:22,354 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:22,356 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:22,357 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:22,358 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:22,359 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:22,360 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:16:22,374 running build_ext 2025-09-08T22:16:22,702 building 'lightdock.mathutil.cython.cutil' extension 2025-09-08T22:16:22,703 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:16:22,703 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-08T22:16:23,064 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T22:16:23,064 196 | #include "longintrepr.h" 2025-09-08T22:16:23,064 | ^~~~~~~~~~~~~~~ 2025-09-08T22:16:23,064 compilation terminated. 2025-09-08T22:16:23,067 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T22:16:23,247 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T22:16:23,260 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T22:16:23,260 exec(compile('"'"''"'"''"'"' 2025-09-08T22:16:23,260 # This is -- a caller that pip uses to run setup.py 2025-09-08T22:16:23,260 # 2025-09-08T22:16:23,260 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T22:16:23,260 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T22:16:23,260 # - It provides a clear error message when setuptools is not installed. 2025-09-08T22:16:23,260 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T22:16:23,260 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T22:16:23,260 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T22:16:23,260 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T22:16:23,260 import os, sys, tokenize, traceback 2025-09-08T22:16:23,260 2025-09-08T22:16:23,260 try: 2025-09-08T22:16:23,260 import setuptools 2025-09-08T22:16:23,260 except ImportError: 2025-09-08T22:16:23,260 print( 2025-09-08T22:16:23,260 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T22:16:23,260 "the build environment with exception:", 2025-09-08T22:16:23,260 file=sys.stderr, 2025-09-08T22:16:23,260 ) 2025-09-08T22:16:23,260 traceback.print_exc() 2025-09-08T22:16:23,260 sys.exit(1) 2025-09-08T22:16:23,260 2025-09-08T22:16:23,260 __file__ = %r 2025-09-08T22:16:23,260 sys.argv[0] = __file__ 2025-09-08T22:16:23,260 2025-09-08T22:16:23,260 if os.path.exists(__file__): 2025-09-08T22:16:23,260 filename = __file__ 2025-09-08T22:16:23,260 with tokenize.open(__file__) as f: 2025-09-08T22:16:23,260 setup_py_code = f.read() 2025-09-08T22:16:23,260 else: 2025-09-08T22:16:23,260 filename = "" 2025-09-08T22:16:23,260 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T22:16:23,260 2025-09-08T22:16:23,260 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T22:16:23,260 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-e1xl8a5n[/] 2025-09-08T22:16:23,260 [bold magenta]cwd[/]: /tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/ 2025-09-08T22:16:23,260 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-08T22:16:23,261 ERROR: Failed building wheel for lightdock 2025-09-08T22:16:23,262 Running setup.py clean for lightdock 2025-09-08T22:16:23,263 Running command python setup.py clean 2025-09-08T22:16:23,784 /tmp/pip-wheel-pz_642vf/lightdock_5da763815836490fabe24e1d1ee269a0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:16:23,784 !! 2025-09-08T22:16:23,784 ******************************************************************************** 2025-09-08T22:16:23,784 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:16:23,784 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:16:23,784 calls to avoid build errors in the future. 2025-09-08T22:16:23,785 ******************************************************************************** 2025-09-08T22:16:23,785 !! 2025-09-08T22:16:23,785 from setuptools.command.test import test as TestCommand 2025-09-08T22:16:24,111 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:16:24,112 !! 2025-09-08T22:16:24,112 ******************************************************************************** 2025-09-08T22:16:24,112 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:16:24,112 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:16:24,112 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:16:24,112 or your builds will no longer be supported. 2025-09-08T22:16:24,112 ******************************************************************************** 2025-09-08T22:16:24,113 !! 2025-09-08T22:16:24,113 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:16:24,954 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:16:24,954 !! 2025-09-08T22:16:24,954 ******************************************************************************** 2025-09-08T22:16:24,955 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:16:24,955 License :: Free For Educational Use 2025-09-08T22:16:24,955 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:16:24,955 ******************************************************************************** 2025-09-08T22:16:24,955 !! 2025-09-08T22:16:24,955 self._finalize_license_expression() 2025-09-08T22:16:25,031 running clean 2025-09-08T22:16:25,180 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T22:16:25,180 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T22:16:25,266 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T22:16:25,266 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T22:16:25,266 removing 'build' 2025-09-08T22:16:25,403 Failed to build lightdock 2025-09-08T22:16:25,404 ERROR: Failed to build one or more wheels 2025-09-08T22:16:25,404 Exception information: 2025-09-08T22:16:25,404 Traceback (most recent call last): 2025-09-08T22:16:25,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T22:16:25,404 status = _inner_run() 2025-09-08T22:16:25,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T22:16:25,404 return self.run(options, args) 2025-09-08T22:16:25,404 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T22:16:25,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T22:16:25,404 return func(self, options, args) 2025-09-08T22:16:25,404 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T22:16:25,404 raise CommandError("Failed to build one or more wheels") 2025-09-08T22:16:25,404 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T22:16:25,408 Removed build tracker: '/tmp/pip-build-tracker-7r541k0r'