2025-09-08T22:45:52,124 Created temporary directory: /tmp/pip-build-tracker-u4d9p0ty 2025-09-08T22:45:52,125 Initialized build tracking at /tmp/pip-build-tracker-u4d9p0ty 2025-09-08T22:45:52,125 Created build tracker: /tmp/pip-build-tracker-u4d9p0ty 2025-09-08T22:45:52,125 Entered build tracker: /tmp/pip-build-tracker-u4d9p0ty 2025-09-08T22:45:52,125 Created temporary directory: /tmp/pip-wheel-gbe6n5t4 2025-09-08T22:45:52,128 Created temporary directory: /tmp/pip-ephem-wheel-cache-ydgxc0su 2025-09-08T22:45:52,190 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T22:45:52,192 2 location(s) to search for versions of pysam-cabbage: 2025-09-08T22:45:52,192 * https://pypi.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,192 * https://www.piwheels.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,192 Fetching project page and analyzing links: https://pypi.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,193 Getting page https://pypi.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,194 Found index url https://pypi.org/simple/ 2025-09-08T22:45:52,340 Fetched page https://pypi.org/simple/pysam-cabbage/ as application/vnd.pypi.simple.v1+json 2025-09-08T22:45:52,341 Found link https://files.pythonhosted.org/packages/20/ee/0a784b6bebbda418a284f9787edfcdf2477a93c9f2f7f2ccb3bc9e882297/pysam-cabbage-0.15.3.tar.gz (from https://pypi.org/simple/pysam-cabbage/), version: 0.15.3 2025-09-08T22:45:52,342 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,343 Getting page https://www.piwheels.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,345 Found index url https://www.piwheels.org/simple/ 2025-09-08T22:45:52,443 Fetched page https://www.piwheels.org/simple/pysam-cabbage/ as text/html 2025-09-08T22:45:52,445 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=41e3617d1c6087b3318726aee62a3a8cb0e7091de8ec422bbaef817f91f67f67 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,445 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=41e3617d1c6087b3318726aee62a3a8cb0e7091de8ec422bbaef817f91f67f67 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,445 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=cc7b7d538093ea6d64525d0278dc9a4c87c0e52801b09761505a05fdb0772f06 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,445 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=cc7b7d538093ea6d64525d0278dc9a4c87c0e52801b09761505a05fdb0772f06 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,446 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp39-cp39-linux_armv6l.whl#sha256=414be6a5ad1464b611307eb8dd80d2a533b77b9e1767ff0dd4ca6541f12bae63 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,446 Skipping link: No binaries permitted for pysam-cabbage: https://archive1.piwheels.org/simple/pysam-cabbage/pysam_cabbage-0.15.3-cp39-cp39-linux_armv7l.whl#sha256=414be6a5ad1464b611307eb8dd80d2a533b77b9e1767ff0dd4ca6541f12bae63 (from https://www.piwheels.org/simple/pysam-cabbage/) 2025-09-08T22:45:52,446 Skipping link: not a file: https://www.piwheels.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,446 Skipping link: not a file: https://pypi.org/simple/pysam-cabbage/ 2025-09-08T22:45:52,470 Given no hashes to check 1 links for project 'pysam-cabbage': discarding no candidates 2025-09-08T22:45:52,471 Collecting pysam-cabbage==0.15.3 2025-09-08T22:45:52,473 Created temporary directory: /tmp/pip-unpack-ftuqm2ps 2025-09-08T22:45:52,911 Downloading pysam-cabbage-0.15.3.tar.gz (1.6 MB) 2025-09-08T22:45:53,533 Added pysam-cabbage==0.15.3 from https://files.pythonhosted.org/packages/20/ee/0a784b6bebbda418a284f9787edfcdf2477a93c9f2f7f2ccb3bc9e882297/pysam-cabbage-0.15.3.tar.gz to build tracker '/tmp/pip-build-tracker-u4d9p0ty' 2025-09-08T22:45:53,534 Running setup.py (path:/tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/setup.py) egg_info for package pysam-cabbage 2025-09-08T22:45:53,534 Created temporary directory: /tmp/pip-pip-egg-info-dhjh6fbo 2025-09-08T22:45:53,534 Preparing metadata (setup.py): started 2025-09-08T22:45:53,535 Running command python setup.py egg_info 2025-09-08T22:45:54,043 /tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/setup.py:251: SyntaxWarning: invalid escape sequence '\.' 2025-09-08T22:45:54,043 shared_htslib_sources = [re.sub("\.o", ".c", os.path.join("htslib", x)) 2025-09-08T22:45:54,043 /tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/setup.py:296: SyntaxWarning: invalid escape sequence '\S' 2025-09-08T22:45:54,043 "#define (\S+)\s+(\S+)", line).groups() 2025-09-08T22:45:54,089 /tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/cy_build.py:12: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T22:45:54,089 from pkg_resources import Distribution 2025-09-08T22:45:54,425 # pysam: cython is available - using cythonize if necessary 2025-09-08T22:45:54,425 # pysam: htslib mode is shared 2025-09-08T22:45:54,426 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2025-09-08T22:45:54,426 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2025-09-08T22:45:54,426 # pysam: (sysconfig) CFLAGS=-fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall 2025-09-08T22:45:54,426 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2025-09-08T22:45:54,823 checking for gcc... arm-linux-gnueabihf-gcc 2025-09-08T22:45:55,111 checking whether the C compiler works... yes 2025-09-08T22:45:55,111 checking for C compiler default output file name... a.out 2025-09-08T22:45:55,281 checking for suffix of executables... 2025-09-08T22:45:55,492 checking whether we are cross compiling... no 2025-09-08T22:45:55,576 checking for suffix of object files... o 2025-09-08T22:45:55,658 checking whether we are using the GNU C compiler... yes 2025-09-08T22:45:55,732 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2025-09-08T22:45:55,877 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2025-09-08T22:45:55,878 checking for ranlib... ranlib 2025-09-08T22:45:55,886 checking for grep that handles long lines and -e... /usr/bin/grep 2025-09-08T22:45:55,963 checking for C compiler warning flags... -Wall 2025-09-08T22:45:55,971 checking for special C compiler options needed for large files... no 2025-09-08T22:45:56,068 checking for _FILE_OFFSET_BITS value needed for large files... no 2025-09-08T22:45:56,290 checking for _LARGEFILE_SOURCE value needed for large files... no 2025-09-08T22:45:56,300 checking shared library type for unknown-Linux... plain .so 2025-09-08T22:45:56,416 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2025-09-08T22:45:56,544 checking for egrep... /usr/bin/grep -E 2025-09-08T22:45:57,040 checking for ANSI C header files... yes 2025-09-08T22:45:57,171 checking for sys/types.h... yes 2025-09-08T22:45:57,320 checking for sys/stat.h... yes 2025-09-08T22:45:57,464 checking for stdlib.h... yes 2025-09-08T22:45:57,621 checking for string.h... yes 2025-09-08T22:45:57,775 checking for memory.h... yes 2025-09-08T22:45:57,932 checking for strings.h... yes 2025-09-08T22:45:58,091 checking for inttypes.h... yes 2025-09-08T22:45:58,248 checking for stdint.h... yes 2025-09-08T22:45:58,418 checking for unistd.h... yes 2025-09-08T22:45:58,445 checking for stdlib.h... (cached) yes 2025-09-08T22:45:58,473 checking for unistd.h... (cached) yes 2025-09-08T22:45:58,668 checking for sys/param.h... yes 2025-09-08T22:45:58,884 checking for getpagesize... yes 2025-09-08T22:45:59,237 checking for working mmap... yes 2025-09-08T22:45:59,447 checking for gmtime_r... yes 2025-09-08T22:45:59,672 checking for fsync... yes 2025-09-08T22:45:59,895 checking for drand48... yes 2025-09-08T22:46:00,098 checking whether fdatasync is declared... yes 2025-09-08T22:46:00,291 checking for fdatasync... yes 2025-09-08T22:46:00,721 checking for library containing log... -lm 2025-09-08T22:46:00,836 checking for zlib.h... yes 2025-09-08T22:46:01,029 checking for inflate in -lz... yes 2025-09-08T22:46:01,229 checking for library containing recv... none required 2025-09-08T22:46:01,326 checking for bzlib.h... yes 2025-09-08T22:46:01,524 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2025-09-08T22:46:01,649 checking for lzma.h... yes 2025-09-08T22:46:01,859 checking for lzma_easy_buffer_encode in -llzma... yes 2025-09-08T22:46:01,952 checking for libdeflate.h... yes 2025-09-08T22:46:02,148 checking for libdeflate_deflate_compress in -ldeflate... yes 2025-09-08T22:46:02,526 checking for curl_easy_pause in -lcurl... yes 2025-09-08T22:46:02,751 checking for CCHmac... no 2025-09-08T22:46:03,393 checking for library containing HMAC... -lcrypto 2025-09-08T22:46:03,523 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2025-09-08T22:46:03,597 configure: creating ./config.status 2025-09-08T22:46:03,970 config.status: creating config.mk 2025-09-08T22:46:04,023 config.status: creating htslib.pc.tmp 2025-09-08T22:46:04,080 config.status: creating config.h 2025-09-08T22:46:04,207 make: ./version.sh: No such file or directory 2025-09-08T22:46:04,208 make: ./version.sh: No such file or directory 2025-09-08T22:46:04,799 error in pysam-cabbage setup command: use_2to3 is invalid. 2025-09-08T22:46:04,799 # pysam: htslib configure options: --enable-libcurl 2025-09-08T22:46:04,799 # pysam: htslib_config LDFLAGS=-Wl,-z,relro -g -fwrapv -O2 2025-09-08T22:46:04,799 # pysam: htslib_config LIBHTS_OBJS=kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2025-09-08T22:46:04,799 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2025-09-08T22:46:04,799 # pysam: htslib_config PLATFORM=default 2025-09-08T22:46:04,800 # pysam: config_option: ENABLE_PLUGINS=0 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_COMMONCRYPTO=0 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_GMTIME_R=1 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_HMAC=1 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_IRODS=0 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_LIBCURL=1 2025-09-08T22:46:04,800 # pysam: config_option: HAVE_MMAP=1 2025-09-08T22:46:04,918 ERROR: python setup.py egg_info exited with 1 2025-09-08T22:46:04,930 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T22:46:04,930 exec(compile('"'"''"'"''"'"' 2025-09-08T22:46:04,930 # This is -- a caller that pip uses to run setup.py 2025-09-08T22:46:04,930 # 2025-09-08T22:46:04,930 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T22:46:04,930 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T22:46:04,930 # - It provides a clear error message when setuptools is not installed. 2025-09-08T22:46:04,930 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T22:46:04,930 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T22:46:04,930 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T22:46:04,930 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T22:46:04,930 import os, sys, tokenize, traceback 2025-09-08T22:46:04,930 2025-09-08T22:46:04,930 try: 2025-09-08T22:46:04,930 import setuptools 2025-09-08T22:46:04,930 except ImportError: 2025-09-08T22:46:04,930 print( 2025-09-08T22:46:04,930 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T22:46:04,930 "the build environment with exception:", 2025-09-08T22:46:04,930 file=sys.stderr, 2025-09-08T22:46:04,930 ) 2025-09-08T22:46:04,930 traceback.print_exc() 2025-09-08T22:46:04,930 sys.exit(1) 2025-09-08T22:46:04,930 2025-09-08T22:46:04,930 __file__ = %r 2025-09-08T22:46:04,930 sys.argv[0] = __file__ 2025-09-08T22:46:04,930 2025-09-08T22:46:04,930 if os.path.exists(__file__): 2025-09-08T22:46:04,930 filename = __file__ 2025-09-08T22:46:04,930 with tokenize.open(__file__) as f: 2025-09-08T22:46:04,930 setup_py_code = f.read() 2025-09-08T22:46:04,930 else: 2025-09-08T22:46:04,930 filename = "" 2025-09-08T22:46:04,930 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T22:46:04,930 2025-09-08T22:46:04,930 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T22:46:04,930 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-dhjh6fbo[/] 2025-09-08T22:46:04,930 [bold magenta]cwd[/]: /tmp/pip-wheel-gbe6n5t4/pysam-cabbage_8c765a2d694d440291b1dc013cd33e69/ 2025-09-08T22:46:04,930 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T22:46:04,931 ERROR: metadata generation failed 2025-09-08T22:46:04,936 Exception information: 2025-09-08T22:46:04,936 Traceback (most recent call last): 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T22:46:04,936 call_subprocess( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 args, 2025-09-08T22:46:04,936 ^^^^^ 2025-09-08T22:46:04,936 ...<2 lines>... 2025-09-08T22:46:04,936 spinner=spinner, 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T22:46:04,936 raise error 2025-09-08T22:46:04,936 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T22:46:04,936 2025-09-08T22:46:04,936 The above exception was the direct cause of the following exception: 2025-09-08T22:46:04,936 2025-09-08T22:46:04,936 Traceback (most recent call last): 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T22:46:04,936 status = _inner_run() 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T22:46:04,936 return self.run(options, args) 2025-09-08T22:46:04,936 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T22:46:04,936 return func(self, options, args) 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T22:46:04,936 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T22:46:04,936 result = self._result = resolver.resolve( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T22:46:04,936 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T22:46:04,936 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T22:46:04,936 if not criterion.candidates: 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T22:46:04,936 return bool(self._sequence) 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T22:46:04,936 self._bool = any(self) 2025-09-08T22:46:04,936 ~~~^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T22:46:04,936 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T22:46:04,936 ^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T22:46:04,936 candidate = func() 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T22:46:04,936 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 link, template, name, version 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T22:46:04,936 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 link, 2025-09-08T22:46:04,936 ^^^^^ 2025-09-08T22:46:04,936 ...<3 lines>... 2025-09-08T22:46:04,936 version=version, 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T22:46:04,936 super().__init__( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 link=link, 2025-09-08T22:46:04,936 ^^^^^^^^^^ 2025-09-08T22:46:04,936 ...<4 lines>... 2025-09-08T22:46:04,936 version=version, 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T22:46:04,936 self.dist = self._prepare() 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T22:46:04,936 dist = self._prepare_distribution() 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T22:46:04,936 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T22:46:04,936 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T22:46:04,936 dist = _get_prepared_distribution( 2025-09-08T22:46:04,936 req, 2025-09-08T22:46:04,936 ...<3 lines>... 2025-09-08T22:46:04,936 self.check_build_deps, 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T22:46:04,936 abstract_dist.prepare_distribution_metadata( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 finder, build_isolation, check_build_deps 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T22:46:04,936 self.req.prepare_metadata() 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T22:46:04,936 self.metadata_directory = generate_metadata_legacy( 2025-09-08T22:46:04,936 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:46:04,936 build_env=self.build_env, 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ...<3 lines>... 2025-09-08T22:46:04,936 details=details, 2025-09-08T22:46:04,936 ^^^^^^^^^^^^^^^^ 2025-09-08T22:46:04,936 ) 2025-09-08T22:46:04,936 ^ 2025-09-08T22:46:04,936 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T22:46:04,936 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T22:46:04,936 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T22:46:04,958 Removed pysam-cabbage==0.15.3 from https://files.pythonhosted.org/packages/20/ee/0a784b6bebbda418a284f9787edfcdf2477a93c9f2f7f2ccb3bc9e882297/pysam-cabbage-0.15.3.tar.gz from build tracker '/tmp/pip-build-tracker-u4d9p0ty' 2025-09-08T22:46:04,958 Removed build tracker: '/tmp/pip-build-tracker-u4d9p0ty'