2025-09-08T22:50:03,067 Created temporary directory: /tmp/pip-build-tracker-9ne5uwpw 2025-09-08T22:50:03,068 Initialized build tracking at /tmp/pip-build-tracker-9ne5uwpw 2025-09-08T22:50:03,068 Created build tracker: /tmp/pip-build-tracker-9ne5uwpw 2025-09-08T22:50:03,068 Entered build tracker: /tmp/pip-build-tracker-9ne5uwpw 2025-09-08T22:50:03,068 Created temporary directory: /tmp/pip-wheel-950bu0nh 2025-09-08T22:50:03,072 Created temporary directory: /tmp/pip-ephem-wheel-cache-2n7ailyx 2025-09-08T22:50:03,132 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T22:50:03,134 2 location(s) to search for versions of schictools: 2025-09-08T22:50:03,134 * https://pypi.org/simple/schictools/ 2025-09-08T22:50:03,134 * https://www.piwheels.org/simple/schictools/ 2025-09-08T22:50:03,135 Fetching project page and analyzing links: https://pypi.org/simple/schictools/ 2025-09-08T22:50:03,135 Getting page https://pypi.org/simple/schictools/ 2025-09-08T22:50:03,136 Found index url https://pypi.org/simple/ 2025-09-08T22:50:03,283 Fetched page https://pypi.org/simple/schictools/ as application/vnd.pypi.simple.v1+json 2025-09-08T22:50:03,285 Found link https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.1 2025-09-08T22:50:03,286 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/ec/9d17dbb761a4c9708dd4b11039636be052d0046b0e898edf3ef2d82c209d/scHiCTools-0.0.2-py3.7.egg (from https://pypi.org/simple/schictools/) 2025-09-08T22:50:03,287 Found link https://files.pythonhosted.org/packages/7a/d8/f23804803f0290950482e4500fad0f9756707ead98b04cf7218f6366979a/scHiCTools-0.0.2.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.2 2025-09-08T22:50:03,287 Found link https://files.pythonhosted.org/packages/6c/ad/aee71dfca03663492e178e39d23cba1c1f1a7baddd3bbedfcff207d346ca/scHiCTools-0.0.3.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.3 2025-09-08T22:50:03,288 Fetching project page and analyzing links: https://www.piwheels.org/simple/schictools/ 2025-09-08T22:50:03,288 Getting page https://www.piwheels.org/simple/schictools/ 2025-09-08T22:50:03,290 Found index url https://www.piwheels.org/simple/ 2025-09-08T22:50:03,396 Fetched page https://www.piwheels.org/simple/schictools/ as text/html 2025-09-08T22:50:03,397 Skipping link: not a file: https://www.piwheels.org/simple/schictools/ 2025-09-08T22:50:03,397 Skipping link: not a file: https://pypi.org/simple/schictools/ 2025-09-08T22:50:03,421 Given no hashes to check 1 links for project 'schictools': discarding no candidates 2025-09-08T22:50:03,422 Collecting schictools==0.0.1 2025-09-08T22:50:03,424 Created temporary directory: /tmp/pip-unpack-b5mh6sh1 2025-09-08T22:50:03,727 Downloading scHiCTools-0.0.1.tar.gz (53 kB) 2025-09-08T22:50:03,777 Added schictools==0.0.1 from https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-9ne5uwpw' 2025-09-08T22:50:03,778 Running setup.py (path:/tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/setup.py) egg_info for package schictools 2025-09-08T22:50:03,779 Created temporary directory: /tmp/pip-pip-egg-info-w6s2r_db 2025-09-08T22:50:03,779 Preparing metadata (setup.py): started 2025-09-08T22:50:03,780 Running command python setup.py egg_info 2025-09-08T22:50:04,289 Traceback (most recent call last): 2025-09-08T22:50:04,291 File "", line 2, in 2025-09-08T22:50:04,291 exec(compile(''' 2025-09-08T22:50:04,291 ~~~~^^^^^^^^^^^^ 2025-09-08T22:50:04,291 # This is -- a caller that pip uses to run setup.py 2025-09-08T22:50:04,291 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,291 ...<32 lines>... 2025-09-08T22:50:04,291 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T22:50:04,292 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,292 ''' % ('/tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/setup.py',), "", "exec")) 2025-09-08T22:50:04,292 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,292 File "", line 35, in 2025-09-08T22:50:04,292 File "/tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/setup.py", line 21, in 2025-09-08T22:50:04,292 install_requires = get_requirements('requirements.txt') 2025-09-08T22:50:04,292 File "/tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/setup.py", line 13, in get_requirements 2025-09-08T22:50:04,293 with open(path, "r") as fh: 2025-09-08T22:50:04,293 ~~~~^^^^^^^^^^^ 2025-09-08T22:50:04,293 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2025-09-08T22:50:04,376 ERROR: python setup.py egg_info exited with 1 2025-09-08T22:50:04,389 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T22:50:04,389 exec(compile('"'"''"'"''"'"' 2025-09-08T22:50:04,389 # This is -- a caller that pip uses to run setup.py 2025-09-08T22:50:04,389 # 2025-09-08T22:50:04,389 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T22:50:04,389 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T22:50:04,389 # - It provides a clear error message when setuptools is not installed. 2025-09-08T22:50:04,389 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T22:50:04,389 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T22:50:04,389 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T22:50:04,389 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T22:50:04,389 import os, sys, tokenize, traceback 2025-09-08T22:50:04,389 2025-09-08T22:50:04,389 try: 2025-09-08T22:50:04,389 import setuptools 2025-09-08T22:50:04,389 except ImportError: 2025-09-08T22:50:04,389 print( 2025-09-08T22:50:04,389 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T22:50:04,389 "the build environment with exception:", 2025-09-08T22:50:04,389 file=sys.stderr, 2025-09-08T22:50:04,389 ) 2025-09-08T22:50:04,389 traceback.print_exc() 2025-09-08T22:50:04,389 sys.exit(1) 2025-09-08T22:50:04,389 2025-09-08T22:50:04,389 __file__ = %r 2025-09-08T22:50:04,389 sys.argv[0] = __file__ 2025-09-08T22:50:04,389 2025-09-08T22:50:04,389 if os.path.exists(__file__): 2025-09-08T22:50:04,389 filename = __file__ 2025-09-08T22:50:04,389 with tokenize.open(__file__) as f: 2025-09-08T22:50:04,389 setup_py_code = f.read() 2025-09-08T22:50:04,389 else: 2025-09-08T22:50:04,389 filename = "" 2025-09-08T22:50:04,389 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T22:50:04,389 2025-09-08T22:50:04,389 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T22:50:04,389 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-w6s2r_db[/] 2025-09-08T22:50:04,389 [bold magenta]cwd[/]: /tmp/pip-wheel-950bu0nh/schictools_8d01c0d97c1249aaa5159aee012ce401/ 2025-09-08T22:50:04,390 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T22:50:04,390 ERROR: metadata generation failed 2025-09-08T22:50:04,396 Exception information: 2025-09-08T22:50:04,396 Traceback (most recent call last): 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T22:50:04,396 call_subprocess( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 args, 2025-09-08T22:50:04,396 ^^^^^ 2025-09-08T22:50:04,396 ...<2 lines>... 2025-09-08T22:50:04,396 spinner=spinner, 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T22:50:04,396 raise error 2025-09-08T22:50:04,396 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T22:50:04,396 2025-09-08T22:50:04,396 The above exception was the direct cause of the following exception: 2025-09-08T22:50:04,396 2025-09-08T22:50:04,396 Traceback (most recent call last): 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T22:50:04,396 status = _inner_run() 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T22:50:04,396 return self.run(options, args) 2025-09-08T22:50:04,396 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T22:50:04,396 return func(self, options, args) 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T22:50:04,396 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T22:50:04,396 result = self._result = resolver.resolve( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T22:50:04,396 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T22:50:04,396 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T22:50:04,396 if not criterion.candidates: 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T22:50:04,396 return bool(self._sequence) 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T22:50:04,396 self._bool = any(self) 2025-09-08T22:50:04,396 ~~~^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T22:50:04,396 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T22:50:04,396 ^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T22:50:04,396 candidate = func() 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T22:50:04,396 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 link, template, name, version 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T22:50:04,396 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 link, 2025-09-08T22:50:04,396 ^^^^^ 2025-09-08T22:50:04,396 ...<3 lines>... 2025-09-08T22:50:04,396 version=version, 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T22:50:04,396 super().__init__( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 link=link, 2025-09-08T22:50:04,396 ^^^^^^^^^^ 2025-09-08T22:50:04,396 ...<4 lines>... 2025-09-08T22:50:04,396 version=version, 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T22:50:04,396 self.dist = self._prepare() 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T22:50:04,396 dist = self._prepare_distribution() 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T22:50:04,396 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T22:50:04,396 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T22:50:04,396 dist = _get_prepared_distribution( 2025-09-08T22:50:04,396 req, 2025-09-08T22:50:04,396 ...<3 lines>... 2025-09-08T22:50:04,396 self.check_build_deps, 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T22:50:04,396 abstract_dist.prepare_distribution_metadata( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 finder, build_isolation, check_build_deps 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T22:50:04,396 self.req.prepare_metadata() 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T22:50:04,396 self.metadata_directory = generate_metadata_legacy( 2025-09-08T22:50:04,396 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T22:50:04,396 build_env=self.build_env, 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ...<3 lines>... 2025-09-08T22:50:04,396 details=details, 2025-09-08T22:50:04,396 ^^^^^^^^^^^^^^^^ 2025-09-08T22:50:04,396 ) 2025-09-08T22:50:04,396 ^ 2025-09-08T22:50:04,396 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T22:50:04,396 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T22:50:04,396 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T22:50:04,418 Removed schictools==0.0.1 from https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-9ne5uwpw' 2025-09-08T22:50:04,419 Removed build tracker: '/tmp/pip-build-tracker-9ne5uwpw'