2025-09-08T22:52:10,142 Created temporary directory: /tmp/pip-build-tracker-264p6vkq 2025-09-08T22:52:10,143 Initialized build tracking at /tmp/pip-build-tracker-264p6vkq 2025-09-08T22:52:10,143 Created build tracker: /tmp/pip-build-tracker-264p6vkq 2025-09-08T22:52:10,143 Entered build tracker: /tmp/pip-build-tracker-264p6vkq 2025-09-08T22:52:10,143 Created temporary directory: /tmp/pip-wheel-pa7kbg3z 2025-09-08T22:52:10,146 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ggp3fmq 2025-09-08T22:52:10,201 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T22:52:10,204 2 location(s) to search for versions of lightdock: 2025-09-08T22:52:10,204 * https://pypi.org/simple/lightdock/ 2025-09-08T22:52:10,204 * https://www.piwheels.org/simple/lightdock/ 2025-09-08T22:52:10,204 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-08T22:52:10,204 Getting page https://pypi.org/simple/lightdock/ 2025-09-08T22:52:10,205 Found index url https://pypi.org/simple/ 2025-09-08T22:52:10,278 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-08T22:52:10,283 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,284 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-08T22:52:10,284 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,285 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-08T22:52:10,285 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,285 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-08T22:52:10,285 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,417 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,417 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,417 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,417 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,417 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,418 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,418 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,418 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,418 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-08T22:52:10,418 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-08T22:52:10,418 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-08T22:52:10,444 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-08T22:52:10,445 Collecting lightdock==0.8.0b1 2025-09-08T22:52:10,446 Created temporary directory: /tmp/pip-unpack-6zn0rlep 2025-09-08T22:52:10,829 Downloading lightdock-0.8.0b1.tar.gz (32.7 MB) 2025-09-08T22:52:20,730 Added lightdock==0.8.0b1 from https://files.pythonhosted.org/packages/a2/7c/ed4521e7b10369733e1beeb92a189b4e5ec5fde01736e981c3bd01a3d257/lightdock-0.8.0b1.tar.gz to build tracker '/tmp/pip-build-tracker-264p6vkq' 2025-09-08T22:52:20,731 Running setup.py (path:/tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/setup.py) egg_info for package lightdock 2025-09-08T22:52:20,731 Created temporary directory: /tmp/pip-pip-egg-info-flk73lw_ 2025-09-08T22:52:20,731 Preparing metadata (setup.py): started 2025-09-08T22:52:20,732 Running command python setup.py egg_info 2025-09-08T22:52:21,278 /tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:52:21,278 !! 2025-09-08T22:52:21,278 ******************************************************************************** 2025-09-08T22:52:21,278 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:52:21,278 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:52:21,278 calls to avoid build errors in the future. 2025-09-08T22:52:21,278 ******************************************************************************** 2025-09-08T22:52:21,279 !! 2025-09-08T22:52:21,279 from setuptools.command.test import test as TestCommand 2025-09-08T22:52:21,653 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:52:21,653 !! 2025-09-08T22:52:21,654 ******************************************************************************** 2025-09-08T22:52:21,654 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:52:21,654 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:52:21,654 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:52:21,654 or your builds will no longer be supported. 2025-09-08T22:52:21,654 ******************************************************************************** 2025-09-08T22:52:21,654 !! 2025-09-08T22:52:21,654 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:52:24,832 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:52:24,832 !! 2025-09-08T22:52:24,832 ******************************************************************************** 2025-09-08T22:52:24,832 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:52:24,832 License :: Free For Educational Use 2025-09-08T22:52:24,833 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:52:24,833 ******************************************************************************** 2025-09-08T22:52:24,833 !! 2025-09-08T22:52:24,833 self._finalize_license_expression() 2025-09-08T22:52:24,907 running egg_info 2025-09-08T22:52:24,981 creating /tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info 2025-09-08T22:52:24,981 writing /tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/PKG-INFO 2025-09-08T22:52:24,983 writing dependency_links to /tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/dependency_links.txt 2025-09-08T22:52:24,984 writing requirements to /tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/requires.txt 2025-09-08T22:52:24,984 writing top-level names to /tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/top_level.txt 2025-09-08T22:52:24,984 writing manifest file '/tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:52:25,392 reading manifest file '/tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:52:25,393 reading manifest template 'MANIFEST.in' 2025-09-08T22:52:25,469 adding license file 'LICENSE' 2025-09-08T22:52:25,506 writing manifest file '/tmp/pip-pip-egg-info-flk73lw_/lightdock.egg-info/SOURCES.txt' 2025-09-08T22:52:25,644 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T22:52:25,649 Source in /tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c has version 0.8.0b1, which satisfies requirement lightdock==0.8.0b1 from https://files.pythonhosted.org/packages/a2/7c/ed4521e7b10369733e1beeb92a189b4e5ec5fde01736e981c3bd01a3d257/lightdock-0.8.0b1.tar.gz 2025-09-08T22:52:25,649 Removed lightdock==0.8.0b1 from https://files.pythonhosted.org/packages/a2/7c/ed4521e7b10369733e1beeb92a189b4e5ec5fde01736e981c3bd01a3d257/lightdock-0.8.0b1.tar.gz from build tracker '/tmp/pip-build-tracker-264p6vkq' 2025-09-08T22:52:25,656 Created temporary directory: /tmp/pip-unpack-xgdf40ei 2025-09-08T22:52:25,657 Created temporary directory: /tmp/pip-unpack-bdarh7ag 2025-09-08T22:52:25,657 Building wheels for collected packages: lightdock 2025-09-08T22:52:25,659 Created temporary directory: /tmp/pip-wheel-l3rsfx9j 2025-09-08T22:52:25,659 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T22:52:25,660 Building wheel for lightdock (setup.py): started 2025-09-08T22:52:25,661 Destination directory: /tmp/pip-wheel-l3rsfx9j 2025-09-08T22:52:25,661 Running command python setup.py bdist_wheel 2025-09-08T22:52:26,180 /tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:52:26,181 !! 2025-09-08T22:52:26,181 ******************************************************************************** 2025-09-08T22:52:26,181 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:52:26,181 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:52:26,181 calls to avoid build errors in the future. 2025-09-08T22:52:26,181 ******************************************************************************** 2025-09-08T22:52:26,181 !! 2025-09-08T22:52:26,182 from setuptools.command.test import test as TestCommand 2025-09-08T22:52:26,527 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:52:26,527 !! 2025-09-08T22:52:26,527 ******************************************************************************** 2025-09-08T22:52:26,527 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:52:26,527 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:52:26,527 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:52:26,527 or your builds will no longer be supported. 2025-09-08T22:52:26,527 ******************************************************************************** 2025-09-08T22:52:26,528 !! 2025-09-08T22:52:26,528 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:52:27,386 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:52:27,386 !! 2025-09-08T22:52:27,386 ******************************************************************************** 2025-09-08T22:52:27,386 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:52:27,386 License :: Free For Educational Use 2025-09-08T22:52:27,387 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:52:27,387 ******************************************************************************** 2025-09-08T22:52:27,387 !! 2025-09-08T22:52:27,387 self._finalize_license_expression() 2025-09-08T22:52:27,387 running bdist_wheel 2025-09-08T22:52:27,767 running build 2025-09-08T22:52:27,767 running build_py 2025-09-08T22:52:27,847 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:52:27,848 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:52:27,848 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:52:27,849 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-08T22:52:27,850 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,850 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,851 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,851 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,852 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,852 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,853 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-08T22:52:27,854 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T22:52:27,854 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-08T22:52:27,855 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,855 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,855 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,856 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,856 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,857 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,858 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,858 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,859 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-08T22:52:27,859 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:52:27,860 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:52:27,860 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:52:27,861 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-08T22:52:27,861 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:52:27,862 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:52:27,862 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:52:27,863 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-08T22:52:27,863 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:52:27,864 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:52:27,864 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:52:27,865 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:52:27,865 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-08T22:52:27,866 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,866 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,867 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,867 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,868 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,869 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,869 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-08T22:52:27,870 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:52:27,870 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:52:27,871 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-08T22:52:27,871 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:52:27,872 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:52:27,872 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:52:27,873 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-08T22:52:27,873 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:52:27,874 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:52:27,874 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:52:27,875 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:52:27,875 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-08T22:52:27,876 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,876 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,877 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,877 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,878 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,878 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,879 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,879 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,880 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-08T22:52:27,881 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:52:27,881 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:52:27,881 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-08T22:52:27,882 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:52:27,882 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:52:27,883 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-08T22:52:27,884 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,884 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,884 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,885 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,885 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,886 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,886 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,887 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-08T22:52:27,888 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,888 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,889 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,889 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,890 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,890 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,891 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,891 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,892 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,892 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,893 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-08T22:52:27,894 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:52:27,894 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:52:27,894 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-08T22:52:27,895 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,895 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,896 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,896 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,897 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,897 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,898 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-08T22:52:27,899 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:52:27,899 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:52:27,899 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-08T22:52:27,900 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,900 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,901 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,902 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,902 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,903 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,903 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,904 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-08T22:52:27,904 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,905 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,905 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,906 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,906 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,907 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,907 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,908 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,908 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,909 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,909 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-08T22:52:27,910 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:52:27,910 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:52:27,911 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-08T22:52:27,912 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,912 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,913 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,913 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,914 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,914 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,915 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,915 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,916 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,916 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,917 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,917 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,918 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,918 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-08T22:52:27,919 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,919 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,920 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,921 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,921 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,922 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,922 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,923 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,923 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,924 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-08T22:52:27,925 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,925 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,925 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,926 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,926 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,927 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,927 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,928 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,928 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,929 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,929 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,930 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-08T22:52:27,931 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:52:27,931 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:52:27,931 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-08T22:52:27,932 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:52:27,932 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:52:27,933 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-08T22:52:27,934 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:52:27,934 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:52:27,934 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-08T22:52:27,935 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:52:27,935 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:52:27,936 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-08T22:52:27,937 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:52:27,937 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:52:27,937 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-08T22:52:27,938 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:52:27,938 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:52:27,939 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-08T22:52:27,940 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:52:27,940 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:52:27,940 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-08T22:52:27,941 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:52:27,941 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:52:27,942 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-08T22:52:27,943 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:52:27,943 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:52:27,943 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-08T22:52:27,944 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:52:27,944 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:52:27,945 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-08T22:52:27,946 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:52:27,946 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:52:27,946 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-08T22:52:27,947 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:52:27,947 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:52:27,948 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-08T22:52:27,948 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T22:52:27,949 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-08T22:52:27,949 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:52:27,950 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:52:27,951 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:52:27,952 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-08T22:52:27,952 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:52:27,953 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:52:27,953 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:52:27,954 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:52:27,954 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:52:27,955 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-08T22:52:27,955 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:52:27,956 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:52:27,956 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:52:27,957 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T22:52:27,957 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-08T22:52:27,958 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:52:27,958 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:52:27,958 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:52:27,960 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-08T22:52:27,960 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:52:27,961 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:52:27,961 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:52:27,962 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:52:27,962 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:52:27,962 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:52:27,963 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:52:27,963 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:52:27,964 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:52:27,965 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:52:27,965 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:52:27,965 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-08T22:52:27,966 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:52:27,966 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:52:27,967 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:52:27,968 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-08T22:52:27,969 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:52:27,969 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:52:27,970 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:52:27,970 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:52:27,971 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:52:27,971 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-08T22:52:27,972 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:52:27,972 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:52:27,972 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:52:27,973 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:52:27,973 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:52:27,974 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:52:27,975 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:52:27,975 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:52:27,975 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-08T22:52:27,976 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:52:27,976 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:52:27,977 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:52:27,977 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:52:27,978 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-08T22:52:27,979 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:52:27,980 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:52:27,980 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:52:27,981 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:27,981 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:27,982 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:27,982 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:52:27,982 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:52:27,983 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:52:27,984 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:52:27,984 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-08T22:52:27,985 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:27,985 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:27,986 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:27,986 running egg_info 2025-09-08T22:52:28,063 writing lightdock.egg-info/PKG-INFO 2025-09-08T22:52:28,064 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-08T22:52:28,065 writing requirements to lightdock.egg-info/requires.txt 2025-09-08T22:52:28,065 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-08T22:52:28,171 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T22:52:28,237 reading manifest template 'MANIFEST.in' 2025-09-08T22:52:28,312 adding license file 'LICENSE' 2025-09-08T22:52:28,367 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-08T22:52:28,369 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-08T22:52:28,369 !! 2025-09-08T22:52:28,369 ******************************************************************************** 2025-09-08T22:52:28,369 ############################ 2025-09-08T22:52:28,370 # Package would be ignored # 2025-09-08T22:52:28,370 ############################ 2025-09-08T22:52:28,370 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-08T22:52:28,370 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,370 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,370 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-08T22:52:28,370 to the `packages` configuration field. 2025-09-08T22:52:28,370 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,370 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,371 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,371 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,371 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,371 If you don't want 'lightdock.etc' to be distributed and are 2025-09-08T22:52:28,371 already explicitly excluding 'lightdock.etc' via 2025-09-08T22:52:28,371 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,371 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,372 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,372 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,372 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,372 even if it does not contain any `.py` files. 2025-09-08T22:52:28,372 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,372 directory, all directories are treated like packages. 2025-09-08T22:52:28,372 ******************************************************************************** 2025-09-08T22:52:28,372 !! 2025-09-08T22:52:28,373 check.warn(importable) 2025-09-08T22:52:28,373 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,373 !! 2025-09-08T22:52:28,373 ******************************************************************************** 2025-09-08T22:52:28,373 ############################ 2025-09-08T22:52:28,373 # Package would be ignored # 2025-09-08T22:52:28,373 ############################ 2025-09-08T22:52:28,373 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-08T22:52:28,373 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,374 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,374 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-08T22:52:28,374 to the `packages` configuration field. 2025-09-08T22:52:28,374 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,374 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,374 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,375 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-08T22:52:28,375 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-08T22:52:28,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,375 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,375 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,375 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,376 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,376 even if it does not contain any `.py` files. 2025-09-08T22:52:28,376 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,376 directory, all directories are treated like packages. 2025-09-08T22:52:28,376 ******************************************************************************** 2025-09-08T22:52:28,376 !! 2025-09-08T22:52:28,376 check.warn(importable) 2025-09-08T22:52:28,376 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,376 !! 2025-09-08T22:52:28,376 ******************************************************************************** 2025-09-08T22:52:28,377 ############################ 2025-09-08T22:52:28,377 # Package would be ignored # 2025-09-08T22:52:28,377 ############################ 2025-09-08T22:52:28,377 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-08T22:52:28,377 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,377 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,377 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-08T22:52:28,377 to the `packages` configuration field. 2025-09-08T22:52:28,377 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,378 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,378 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,378 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,378 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,378 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-08T22:52:28,378 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-08T22:52:28,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,378 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,379 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,379 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,379 even if it does not contain any `.py` files. 2025-09-08T22:52:28,379 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,379 directory, all directories are treated like packages. 2025-09-08T22:52:28,379 ******************************************************************************** 2025-09-08T22:52:28,380 !! 2025-09-08T22:52:28,380 check.warn(importable) 2025-09-08T22:52:28,380 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,380 !! 2025-09-08T22:52:28,380 ******************************************************************************** 2025-09-08T22:52:28,380 ############################ 2025-09-08T22:52:28,380 # Package would be ignored # 2025-09-08T22:52:28,380 ############################ 2025-09-08T22:52:28,380 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-08T22:52:28,380 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,381 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,381 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-08T22:52:28,381 to the `packages` configuration field. 2025-09-08T22:52:28,381 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,381 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,381 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,381 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,382 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-08T22:52:28,382 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-08T22:52:28,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,382 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,382 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,383 even if it does not contain any `.py` files. 2025-09-08T22:52:28,383 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,383 directory, all directories are treated like packages. 2025-09-08T22:52:28,383 ******************************************************************************** 2025-09-08T22:52:28,383 !! 2025-09-08T22:52:28,383 check.warn(importable) 2025-09-08T22:52:28,383 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,383 !! 2025-09-08T22:52:28,383 ******************************************************************************** 2025-09-08T22:52:28,384 ############################ 2025-09-08T22:52:28,384 # Package would be ignored # 2025-09-08T22:52:28,384 ############################ 2025-09-08T22:52:28,384 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-08T22:52:28,384 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,384 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,384 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-08T22:52:28,384 to the `packages` configuration field. 2025-09-08T22:52:28,384 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,384 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,384 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,385 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,385 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-08T22:52:28,385 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-08T22:52:28,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,385 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,385 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,385 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,386 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,386 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,386 even if it does not contain any `.py` files. 2025-09-08T22:52:28,386 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,386 directory, all directories are treated like packages. 2025-09-08T22:52:28,386 ******************************************************************************** 2025-09-08T22:52:28,386 !! 2025-09-08T22:52:28,387 check.warn(importable) 2025-09-08T22:52:28,387 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,387 !! 2025-09-08T22:52:28,387 ******************************************************************************** 2025-09-08T22:52:28,387 ############################ 2025-09-08T22:52:28,387 # Package would be ignored # 2025-09-08T22:52:28,387 ############################ 2025-09-08T22:52:28,387 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-08T22:52:28,387 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,387 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,388 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-08T22:52:28,388 to the `packages` configuration field. 2025-09-08T22:52:28,388 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,388 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,388 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,388 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,388 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,388 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-08T22:52:28,389 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-08T22:52:28,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,389 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,389 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,389 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,390 even if it does not contain any `.py` files. 2025-09-08T22:52:28,390 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,390 directory, all directories are treated like packages. 2025-09-08T22:52:28,390 ******************************************************************************** 2025-09-08T22:52:28,390 !! 2025-09-08T22:52:28,390 check.warn(importable) 2025-09-08T22:52:28,390 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-08T22:52:28,390 !! 2025-09-08T22:52:28,390 ******************************************************************************** 2025-09-08T22:52:28,390 ############################ 2025-09-08T22:52:28,391 # Package would be ignored # 2025-09-08T22:52:28,391 ############################ 2025-09-08T22:52:28,391 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-08T22:52:28,391 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,391 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,391 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-08T22:52:28,391 to the `packages` configuration field. 2025-09-08T22:52:28,391 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,391 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,392 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,392 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,392 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-08T22:52:28,392 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-08T22:52:28,392 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,392 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,392 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,393 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,393 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,393 even if it does not contain any `.py` files. 2025-09-08T22:52:28,393 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,393 directory, all directories are treated like packages. 2025-09-08T22:52:28,393 ******************************************************************************** 2025-09-08T22:52:28,393 !! 2025-09-08T22:52:28,394 check.warn(importable) 2025-09-08T22:52:28,394 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,394 !! 2025-09-08T22:52:28,394 ******************************************************************************** 2025-09-08T22:52:28,394 ############################ 2025-09-08T22:52:28,394 # Package would be ignored # 2025-09-08T22:52:28,394 ############################ 2025-09-08T22:52:28,394 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-08T22:52:28,394 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,395 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,395 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-08T22:52:28,395 to the `packages` configuration field. 2025-09-08T22:52:28,395 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,395 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,395 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,395 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,395 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,396 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-08T22:52:28,396 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-08T22:52:28,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,396 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,396 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,396 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,396 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,397 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,397 even if it does not contain any `.py` files. 2025-09-08T22:52:28,397 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,397 directory, all directories are treated like packages. 2025-09-08T22:52:28,397 ******************************************************************************** 2025-09-08T22:52:28,397 !! 2025-09-08T22:52:28,397 check.warn(importable) 2025-09-08T22:52:28,397 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,397 !! 2025-09-08T22:52:28,398 ******************************************************************************** 2025-09-08T22:52:28,398 ############################ 2025-09-08T22:52:28,398 # Package would be ignored # 2025-09-08T22:52:28,398 ############################ 2025-09-08T22:52:28,398 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-08T22:52:28,398 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,398 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,398 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-08T22:52:28,398 to the `packages` configuration field. 2025-09-08T22:52:28,398 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,399 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,399 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,399 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,399 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-08T22:52:28,399 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-08T22:52:28,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,400 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,400 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,400 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,400 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,400 even if it does not contain any `.py` files. 2025-09-08T22:52:28,401 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,401 directory, all directories are treated like packages. 2025-09-08T22:52:28,401 ******************************************************************************** 2025-09-08T22:52:28,401 !! 2025-09-08T22:52:28,401 check.warn(importable) 2025-09-08T22:52:28,401 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,401 !! 2025-09-08T22:52:28,401 ******************************************************************************** 2025-09-08T22:52:28,401 ############################ 2025-09-08T22:52:28,402 # Package would be ignored # 2025-09-08T22:52:28,402 ############################ 2025-09-08T22:52:28,402 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,402 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,402 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,402 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-08T22:52:28,402 to the `packages` configuration field. 2025-09-08T22:52:28,402 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,402 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,403 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,403 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,403 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,403 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-08T22:52:28,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,403 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,404 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,404 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,404 even if it does not contain any `.py` files. 2025-09-08T22:52:28,404 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,404 directory, all directories are treated like packages. 2025-09-08T22:52:28,404 ******************************************************************************** 2025-09-08T22:52:28,404 !! 2025-09-08T22:52:28,405 check.warn(importable) 2025-09-08T22:52:28,405 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:52:28,405 !! 2025-09-08T22:52:28,405 ******************************************************************************** 2025-09-08T22:52:28,405 ############################ 2025-09-08T22:52:28,405 # Package would be ignored # 2025-09-08T22:52:28,405 ############################ 2025-09-08T22:52:28,405 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-08T22:52:28,405 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,406 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,406 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-08T22:52:28,406 to the `packages` configuration field. 2025-09-08T22:52:28,406 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,406 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,406 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,406 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,407 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-08T22:52:28,407 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-08T22:52:28,407 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,407 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,407 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,408 even if it does not contain any `.py` files. 2025-09-08T22:52:28,408 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,408 directory, all directories are treated like packages. 2025-09-08T22:52:28,408 ******************************************************************************** 2025-09-08T22:52:28,408 !! 2025-09-08T22:52:28,408 check.warn(importable) 2025-09-08T22:52:28,408 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:52:28,408 !! 2025-09-08T22:52:28,408 ******************************************************************************** 2025-09-08T22:52:28,409 ############################ 2025-09-08T22:52:28,409 # Package would be ignored # 2025-09-08T22:52:28,409 ############################ 2025-09-08T22:52:28,409 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-08T22:52:28,409 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,409 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,409 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-08T22:52:28,409 to the `packages` configuration field. 2025-09-08T22:52:28,409 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,410 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,410 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,410 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,410 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,410 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-08T22:52:28,410 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-08T22:52:28,410 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,410 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,411 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,411 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,411 even if it does not contain any `.py` files. 2025-09-08T22:52:28,411 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,411 directory, all directories are treated like packages. 2025-09-08T22:52:28,412 ******************************************************************************** 2025-09-08T22:52:28,412 !! 2025-09-08T22:52:28,412 check.warn(importable) 2025-09-08T22:52:28,412 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:52:28,412 !! 2025-09-08T22:52:28,412 ******************************************************************************** 2025-09-08T22:52:28,412 ############################ 2025-09-08T22:52:28,412 # Package would be ignored # 2025-09-08T22:52:28,412 ############################ 2025-09-08T22:52:28,412 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-08T22:52:28,412 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,413 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,413 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-08T22:52:28,413 to the `packages` configuration field. 2025-09-08T22:52:28,413 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,413 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,413 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,413 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,414 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,414 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-08T22:52:28,414 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-08T22:52:28,414 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,414 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,414 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,414 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,415 even if it does not contain any `.py` files. 2025-09-08T22:52:28,415 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,415 directory, all directories are treated like packages. 2025-09-08T22:52:28,415 ******************************************************************************** 2025-09-08T22:52:28,415 !! 2025-09-08T22:52:28,415 check.warn(importable) 2025-09-08T22:52:28,415 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:52:28,415 !! 2025-09-08T22:52:28,416 ******************************************************************************** 2025-09-08T22:52:28,416 ############################ 2025-09-08T22:52:28,416 # Package would be ignored # 2025-09-08T22:52:28,416 ############################ 2025-09-08T22:52:28,416 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-08T22:52:28,416 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,416 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,416 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-08T22:52:28,416 to the `packages` configuration field. 2025-09-08T22:52:28,416 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,417 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,417 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,417 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-08T22:52:28,417 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-08T22:52:28,417 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,417 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,417 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,418 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,418 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,418 even if it does not contain any `.py` files. 2025-09-08T22:52:28,418 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,418 directory, all directories are treated like packages. 2025-09-08T22:52:28,418 ******************************************************************************** 2025-09-08T22:52:28,418 !! 2025-09-08T22:52:28,419 check.warn(importable) 2025-09-08T22:52:28,419 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,419 !! 2025-09-08T22:52:28,419 ******************************************************************************** 2025-09-08T22:52:28,419 ############################ 2025-09-08T22:52:28,419 # Package would be ignored # 2025-09-08T22:52:28,419 ############################ 2025-09-08T22:52:28,419 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-08T22:52:28,419 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,420 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,420 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-08T22:52:28,420 to the `packages` configuration field. 2025-09-08T22:52:28,420 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,420 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,420 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,420 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-08T22:52:28,421 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-08T22:52:28,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,421 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,421 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,421 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,421 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,421 even if it does not contain any `.py` files. 2025-09-08T22:52:28,422 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,422 directory, all directories are treated like packages. 2025-09-08T22:52:28,422 ******************************************************************************** 2025-09-08T22:52:28,422 !! 2025-09-08T22:52:28,422 check.warn(importable) 2025-09-08T22:52:28,422 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,422 !! 2025-09-08T22:52:28,422 ******************************************************************************** 2025-09-08T22:52:28,422 ############################ 2025-09-08T22:52:28,422 # Package would be ignored # 2025-09-08T22:52:28,423 ############################ 2025-09-08T22:52:28,423 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,423 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,423 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,423 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-08T22:52:28,423 to the `packages` configuration field. 2025-09-08T22:52:28,423 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,423 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,424 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,424 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,424 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-08T22:52:28,424 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-08T22:52:28,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,424 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,424 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,425 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,425 even if it does not contain any `.py` files. 2025-09-08T22:52:28,425 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,425 directory, all directories are treated like packages. 2025-09-08T22:52:28,425 ******************************************************************************** 2025-09-08T22:52:28,425 !! 2025-09-08T22:52:28,425 check.warn(importable) 2025-09-08T22:52:28,426 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,426 !! 2025-09-08T22:52:28,426 ******************************************************************************** 2025-09-08T22:52:28,426 ############################ 2025-09-08T22:52:28,426 # Package would be ignored # 2025-09-08T22:52:28,426 ############################ 2025-09-08T22:52:28,426 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,426 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,426 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,426 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,427 to the `packages` configuration field. 2025-09-08T22:52:28,427 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,427 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,427 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,427 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,427 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,427 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-08T22:52:28,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,428 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,428 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,428 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,428 even if it does not contain any `.py` files. 2025-09-08T22:52:28,428 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,429 directory, all directories are treated like packages. 2025-09-08T22:52:28,429 ******************************************************************************** 2025-09-08T22:52:28,429 !! 2025-09-08T22:52:28,429 check.warn(importable) 2025-09-08T22:52:28,429 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,429 !! 2025-09-08T22:52:28,429 ******************************************************************************** 2025-09-08T22:52:28,429 ############################ 2025-09-08T22:52:28,429 # Package would be ignored # 2025-09-08T22:52:28,429 ############################ 2025-09-08T22:52:28,430 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-08T22:52:28,430 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,430 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,430 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-08T22:52:28,430 to the `packages` configuration field. 2025-09-08T22:52:28,430 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,430 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,430 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,430 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,431 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-08T22:52:28,431 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-08T22:52:28,431 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,431 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,431 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,431 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,431 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,432 even if it does not contain any `.py` files. 2025-09-08T22:52:28,432 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,432 directory, all directories are treated like packages. 2025-09-08T22:52:28,432 ******************************************************************************** 2025-09-08T22:52:28,432 !! 2025-09-08T22:52:28,432 check.warn(importable) 2025-09-08T22:52:28,432 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,432 !! 2025-09-08T22:52:28,433 ******************************************************************************** 2025-09-08T22:52:28,433 ############################ 2025-09-08T22:52:28,433 # Package would be ignored # 2025-09-08T22:52:28,433 ############################ 2025-09-08T22:52:28,433 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-08T22:52:28,433 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,433 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,433 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-08T22:52:28,433 to the `packages` configuration field. 2025-09-08T22:52:28,433 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,434 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,434 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,434 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-08T22:52:28,434 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-08T22:52:28,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,434 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,435 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,435 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,435 even if it does not contain any `.py` files. 2025-09-08T22:52:28,435 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,435 directory, all directories are treated like packages. 2025-09-08T22:52:28,435 ******************************************************************************** 2025-09-08T22:52:28,435 !! 2025-09-08T22:52:28,436 check.warn(importable) 2025-09-08T22:52:28,436 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,436 !! 2025-09-08T22:52:28,436 ******************************************************************************** 2025-09-08T22:52:28,436 ############################ 2025-09-08T22:52:28,436 # Package would be ignored # 2025-09-08T22:52:28,436 ############################ 2025-09-08T22:52:28,436 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,436 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,436 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,437 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-08T22:52:28,437 to the `packages` configuration field. 2025-09-08T22:52:28,437 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,437 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,437 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,437 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,438 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,438 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-08T22:52:28,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,438 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,438 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,438 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,438 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,439 even if it does not contain any `.py` files. 2025-09-08T22:52:28,439 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,439 directory, all directories are treated like packages. 2025-09-08T22:52:28,439 ******************************************************************************** 2025-09-08T22:52:28,439 !! 2025-09-08T22:52:28,439 check.warn(importable) 2025-09-08T22:52:28,439 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,439 !! 2025-09-08T22:52:28,439 ******************************************************************************** 2025-09-08T22:52:28,439 ############################ 2025-09-08T22:52:28,440 # Package would be ignored # 2025-09-08T22:52:28,440 ############################ 2025-09-08T22:52:28,440 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-08T22:52:28,440 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,440 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,440 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-08T22:52:28,440 to the `packages` configuration field. 2025-09-08T22:52:28,440 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,440 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,441 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,441 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,441 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-08T22:52:28,441 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-08T22:52:28,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,441 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,441 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,441 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,442 even if it does not contain any `.py` files. 2025-09-08T22:52:28,442 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,442 directory, all directories are treated like packages. 2025-09-08T22:52:28,442 ******************************************************************************** 2025-09-08T22:52:28,442 !! 2025-09-08T22:52:28,442 check.warn(importable) 2025-09-08T22:52:28,443 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,443 !! 2025-09-08T22:52:28,443 ******************************************************************************** 2025-09-08T22:52:28,443 ############################ 2025-09-08T22:52:28,443 # Package would be ignored # 2025-09-08T22:52:28,443 ############################ 2025-09-08T22:52:28,443 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-08T22:52:28,443 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,443 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,443 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-08T22:52:28,443 to the `packages` configuration field. 2025-09-08T22:52:28,444 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,444 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,444 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,444 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,444 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-08T22:52:28,444 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-08T22:52:28,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,445 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,445 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,445 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,445 even if it does not contain any `.py` files. 2025-09-08T22:52:28,445 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,445 directory, all directories are treated like packages. 2025-09-08T22:52:28,446 ******************************************************************************** 2025-09-08T22:52:28,446 !! 2025-09-08T22:52:28,446 check.warn(importable) 2025-09-08T22:52:28,446 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,446 !! 2025-09-08T22:52:28,446 ******************************************************************************** 2025-09-08T22:52:28,446 ############################ 2025-09-08T22:52:28,446 # Package would be ignored # 2025-09-08T22:52:28,446 ############################ 2025-09-08T22:52:28,446 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,447 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,447 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,447 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-08T22:52:28,447 to the `packages` configuration field. 2025-09-08T22:52:28,447 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,447 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,447 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,448 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,448 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-08T22:52:28,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,448 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,448 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,449 even if it does not contain any `.py` files. 2025-09-08T22:52:28,449 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,449 directory, all directories are treated like packages. 2025-09-08T22:52:28,449 ******************************************************************************** 2025-09-08T22:52:28,449 !! 2025-09-08T22:52:28,449 check.warn(importable) 2025-09-08T22:52:28,449 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:52:28,449 !! 2025-09-08T22:52:28,449 ******************************************************************************** 2025-09-08T22:52:28,450 ############################ 2025-09-08T22:52:28,450 # Package would be ignored # 2025-09-08T22:52:28,450 ############################ 2025-09-08T22:52:28,450 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-08T22:52:28,450 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,450 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,450 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-08T22:52:28,450 to the `packages` configuration field. 2025-09-08T22:52:28,450 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,451 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,451 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,451 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-08T22:52:28,451 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-08T22:52:28,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,451 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,451 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,452 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,452 even if it does not contain any `.py` files. 2025-09-08T22:52:28,452 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,452 directory, all directories are treated like packages. 2025-09-08T22:52:28,452 ******************************************************************************** 2025-09-08T22:52:28,453 !! 2025-09-08T22:52:28,453 check.warn(importable) 2025-09-08T22:52:28,453 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:52:28,453 !! 2025-09-08T22:52:28,453 ******************************************************************************** 2025-09-08T22:52:28,453 ############################ 2025-09-08T22:52:28,453 # Package would be ignored # 2025-09-08T22:52:28,453 ############################ 2025-09-08T22:52:28,453 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-08T22:52:28,453 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,454 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-08T22:52:28,454 to the `packages` configuration field. 2025-09-08T22:52:28,454 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,454 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,454 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,454 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-08T22:52:28,455 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-08T22:52:28,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,455 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,455 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,455 even if it does not contain any `.py` files. 2025-09-08T22:52:28,456 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,456 directory, all directories are treated like packages. 2025-09-08T22:52:28,456 ******************************************************************************** 2025-09-08T22:52:28,456 !! 2025-09-08T22:52:28,456 check.warn(importable) 2025-09-08T22:52:28,456 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:52:28,456 !! 2025-09-08T22:52:28,456 ******************************************************************************** 2025-09-08T22:52:28,456 ############################ 2025-09-08T22:52:28,456 # Package would be ignored # 2025-09-08T22:52:28,457 ############################ 2025-09-08T22:52:28,457 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-08T22:52:28,457 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,457 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,457 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-08T22:52:28,457 to the `packages` configuration field. 2025-09-08T22:52:28,457 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,457 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,457 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,458 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-08T22:52:28,458 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-08T22:52:28,458 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,458 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,458 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,458 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,459 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,459 even if it does not contain any `.py` files. 2025-09-08T22:52:28,459 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,459 directory, all directories are treated like packages. 2025-09-08T22:52:28,459 ******************************************************************************** 2025-09-08T22:52:28,459 !! 2025-09-08T22:52:28,459 check.warn(importable) 2025-09-08T22:52:28,459 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:52:28,459 !! 2025-09-08T22:52:28,460 ******************************************************************************** 2025-09-08T22:52:28,460 ############################ 2025-09-08T22:52:28,460 # Package would be ignored # 2025-09-08T22:52:28,460 ############################ 2025-09-08T22:52:28,460 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-08T22:52:28,460 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,460 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,460 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-08T22:52:28,460 to the `packages` configuration field. 2025-09-08T22:52:28,461 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,461 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,461 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,461 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,461 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-08T22:52:28,461 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-08T22:52:28,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,461 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,462 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,462 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,462 even if it does not contain any `.py` files. 2025-09-08T22:52:28,462 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,462 directory, all directories are treated like packages. 2025-09-08T22:52:28,462 ******************************************************************************** 2025-09-08T22:52:28,463 !! 2025-09-08T22:52:28,463 check.warn(importable) 2025-09-08T22:52:28,463 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,463 !! 2025-09-08T22:52:28,463 ******************************************************************************** 2025-09-08T22:52:28,463 ############################ 2025-09-08T22:52:28,463 # Package would be ignored # 2025-09-08T22:52:28,463 ############################ 2025-09-08T22:52:28,463 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-08T22:52:28,463 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,464 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,464 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-08T22:52:28,464 to the `packages` configuration field. 2025-09-08T22:52:28,464 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,464 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,464 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,465 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-08T22:52:28,465 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-08T22:52:28,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,465 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,465 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,465 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,466 even if it does not contain any `.py` files. 2025-09-08T22:52:28,466 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,466 directory, all directories are treated like packages. 2025-09-08T22:52:28,466 ******************************************************************************** 2025-09-08T22:52:28,466 !! 2025-09-08T22:52:28,466 check.warn(importable) 2025-09-08T22:52:28,466 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,466 !! 2025-09-08T22:52:28,466 ******************************************************************************** 2025-09-08T22:52:28,467 ############################ 2025-09-08T22:52:28,467 # Package would be ignored # 2025-09-08T22:52:28,467 ############################ 2025-09-08T22:52:28,467 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-08T22:52:28,467 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,467 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,467 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-08T22:52:28,467 to the `packages` configuration field. 2025-09-08T22:52:28,467 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,467 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,467 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,468 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,468 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,468 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-08T22:52:28,468 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-08T22:52:28,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,468 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,468 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,468 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,469 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,469 even if it does not contain any `.py` files. 2025-09-08T22:52:28,469 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,469 directory, all directories are treated like packages. 2025-09-08T22:52:28,469 ******************************************************************************** 2025-09-08T22:52:28,469 !! 2025-09-08T22:52:28,469 check.warn(importable) 2025-09-08T22:52:28,470 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,470 !! 2025-09-08T22:52:28,470 ******************************************************************************** 2025-09-08T22:52:28,470 ############################ 2025-09-08T22:52:28,470 # Package would be ignored # 2025-09-08T22:52:28,470 ############################ 2025-09-08T22:52:28,470 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,470 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,470 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,470 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-08T22:52:28,470 to the `packages` configuration field. 2025-09-08T22:52:28,471 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,471 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,471 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,471 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,471 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-08T22:52:28,471 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,472 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,472 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,472 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,472 even if it does not contain any `.py` files. 2025-09-08T22:52:28,472 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,472 directory, all directories are treated like packages. 2025-09-08T22:52:28,472 ******************************************************************************** 2025-09-08T22:52:28,473 !! 2025-09-08T22:52:28,473 check.warn(importable) 2025-09-08T22:52:28,473 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,473 !! 2025-09-08T22:52:28,473 ******************************************************************************** 2025-09-08T22:52:28,473 ############################ 2025-09-08T22:52:28,473 # Package would be ignored # 2025-09-08T22:52:28,473 ############################ 2025-09-08T22:52:28,473 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-08T22:52:28,473 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,474 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,474 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-08T22:52:28,474 to the `packages` configuration field. 2025-09-08T22:52:28,474 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,474 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,474 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,475 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,475 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-08T22:52:28,475 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-08T22:52:28,475 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,475 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,475 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,476 even if it does not contain any `.py` files. 2025-09-08T22:52:28,476 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,476 directory, all directories are treated like packages. 2025-09-08T22:52:28,476 ******************************************************************************** 2025-09-08T22:52:28,476 !! 2025-09-08T22:52:28,476 check.warn(importable) 2025-09-08T22:52:28,476 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,476 !! 2025-09-08T22:52:28,477 ******************************************************************************** 2025-09-08T22:52:28,477 ############################ 2025-09-08T22:52:28,477 # Package would be ignored # 2025-09-08T22:52:28,477 ############################ 2025-09-08T22:52:28,477 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,477 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,477 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,477 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-08T22:52:28,477 to the `packages` configuration field. 2025-09-08T22:52:28,477 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,478 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,478 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,478 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,478 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-08T22:52:28,478 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-08T22:52:28,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,478 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,479 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,479 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,479 even if it does not contain any `.py` files. 2025-09-08T22:52:28,479 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,479 directory, all directories are treated like packages. 2025-09-08T22:52:28,479 ******************************************************************************** 2025-09-08T22:52:28,480 !! 2025-09-08T22:52:28,480 check.warn(importable) 2025-09-08T22:52:28,480 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,480 !! 2025-09-08T22:52:28,480 ******************************************************************************** 2025-09-08T22:52:28,480 ############################ 2025-09-08T22:52:28,480 # Package would be ignored # 2025-09-08T22:52:28,480 ############################ 2025-09-08T22:52:28,480 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,480 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,481 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,481 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,481 to the `packages` configuration field. 2025-09-08T22:52:28,481 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,481 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,481 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,481 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,482 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-08T22:52:28,482 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,482 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,482 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,482 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,482 even if it does not contain any `.py` files. 2025-09-08T22:52:28,483 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,483 directory, all directories are treated like packages. 2025-09-08T22:52:28,483 ******************************************************************************** 2025-09-08T22:52:28,483 !! 2025-09-08T22:52:28,483 check.warn(importable) 2025-09-08T22:52:28,483 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,483 !! 2025-09-08T22:52:28,483 ******************************************************************************** 2025-09-08T22:52:28,483 ############################ 2025-09-08T22:52:28,483 # Package would be ignored # 2025-09-08T22:52:28,484 ############################ 2025-09-08T22:52:28,484 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-08T22:52:28,484 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,484 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,484 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-08T22:52:28,484 to the `packages` configuration field. 2025-09-08T22:52:28,484 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,484 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,484 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,485 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-08T22:52:28,485 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-08T22:52:28,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,485 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,485 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,486 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,486 even if it does not contain any `.py` files. 2025-09-08T22:52:28,486 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,486 directory, all directories are treated like packages. 2025-09-08T22:52:28,486 ******************************************************************************** 2025-09-08T22:52:28,486 !! 2025-09-08T22:52:28,486 check.warn(importable) 2025-09-08T22:52:28,486 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,486 !! 2025-09-08T22:52:28,487 ******************************************************************************** 2025-09-08T22:52:28,487 ############################ 2025-09-08T22:52:28,487 # Package would be ignored # 2025-09-08T22:52:28,487 ############################ 2025-09-08T22:52:28,487 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-08T22:52:28,487 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,487 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,487 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-08T22:52:28,487 to the `packages` configuration field. 2025-09-08T22:52:28,488 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,488 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,488 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,488 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-08T22:52:28,488 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-08T22:52:28,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,489 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,489 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,489 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,489 even if it does not contain any `.py` files. 2025-09-08T22:52:28,489 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,489 directory, all directories are treated like packages. 2025-09-08T22:52:28,490 ******************************************************************************** 2025-09-08T22:52:28,490 !! 2025-09-08T22:52:28,490 check.warn(importable) 2025-09-08T22:52:28,490 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,490 !! 2025-09-08T22:52:28,490 ******************************************************************************** 2025-09-08T22:52:28,490 ############################ 2025-09-08T22:52:28,490 # Package would be ignored # 2025-09-08T22:52:28,490 ############################ 2025-09-08T22:52:28,490 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,491 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,491 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,491 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-08T22:52:28,491 to the `packages` configuration field. 2025-09-08T22:52:28,491 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,491 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,491 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,492 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,492 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-08T22:52:28,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,492 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,492 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,493 even if it does not contain any `.py` files. 2025-09-08T22:52:28,493 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,493 directory, all directories are treated like packages. 2025-09-08T22:52:28,493 ******************************************************************************** 2025-09-08T22:52:28,493 !! 2025-09-08T22:52:28,493 check.warn(importable) 2025-09-08T22:52:28,493 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,493 !! 2025-09-08T22:52:28,493 ******************************************************************************** 2025-09-08T22:52:28,494 ############################ 2025-09-08T22:52:28,494 # Package would be ignored # 2025-09-08T22:52:28,494 ############################ 2025-09-08T22:52:28,494 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-08T22:52:28,494 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,494 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,494 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-08T22:52:28,494 to the `packages` configuration field. 2025-09-08T22:52:28,495 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,495 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,495 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,495 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-08T22:52:28,495 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-08T22:52:28,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,496 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,496 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,496 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,496 even if it does not contain any `.py` files. 2025-09-08T22:52:28,496 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,496 directory, all directories are treated like packages. 2025-09-08T22:52:28,497 ******************************************************************************** 2025-09-08T22:52:28,497 !! 2025-09-08T22:52:28,497 check.warn(importable) 2025-09-08T22:52:28,497 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,497 !! 2025-09-08T22:52:28,497 ******************************************************************************** 2025-09-08T22:52:28,497 ############################ 2025-09-08T22:52:28,497 # Package would be ignored # 2025-09-08T22:52:28,497 ############################ 2025-09-08T22:52:28,497 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-08T22:52:28,498 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,498 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,498 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-08T22:52:28,498 to the `packages` configuration field. 2025-09-08T22:52:28,498 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,498 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,498 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,499 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-08T22:52:28,499 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-08T22:52:28,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,499 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,499 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,500 even if it does not contain any `.py` files. 2025-09-08T22:52:28,500 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,500 directory, all directories are treated like packages. 2025-09-08T22:52:28,500 ******************************************************************************** 2025-09-08T22:52:28,500 !! 2025-09-08T22:52:28,500 check.warn(importable) 2025-09-08T22:52:28,500 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,500 !! 2025-09-08T22:52:28,501 ******************************************************************************** 2025-09-08T22:52:28,501 ############################ 2025-09-08T22:52:28,501 # Package would be ignored # 2025-09-08T22:52:28,501 ############################ 2025-09-08T22:52:28,501 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,501 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,501 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,501 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-08T22:52:28,501 to the `packages` configuration field. 2025-09-08T22:52:28,502 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,502 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,502 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,502 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,502 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-08T22:52:28,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,502 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,503 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,503 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,503 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,503 even if it does not contain any `.py` files. 2025-09-08T22:52:28,503 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,503 directory, all directories are treated like packages. 2025-09-08T22:52:28,503 ******************************************************************************** 2025-09-08T22:52:28,504 !! 2025-09-08T22:52:28,504 check.warn(importable) 2025-09-08T22:52:28,504 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:52:28,504 !! 2025-09-08T22:52:28,504 ******************************************************************************** 2025-09-08T22:52:28,504 ############################ 2025-09-08T22:52:28,504 # Package would be ignored # 2025-09-08T22:52:28,504 ############################ 2025-09-08T22:52:28,504 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-08T22:52:28,504 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,505 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,505 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-08T22:52:28,505 to the `packages` configuration field. 2025-09-08T22:52:28,505 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,505 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,505 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,505 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,506 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-08T22:52:28,506 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-08T22:52:28,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,506 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,506 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,506 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,506 even if it does not contain any `.py` files. 2025-09-08T22:52:28,507 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,507 directory, all directories are treated like packages. 2025-09-08T22:52:28,507 ******************************************************************************** 2025-09-08T22:52:28,507 !! 2025-09-08T22:52:28,507 check.warn(importable) 2025-09-08T22:52:28,507 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:52:28,507 !! 2025-09-08T22:52:28,507 ******************************************************************************** 2025-09-08T22:52:28,507 ############################ 2025-09-08T22:52:28,507 # Package would be ignored # 2025-09-08T22:52:28,508 ############################ 2025-09-08T22:52:28,508 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-08T22:52:28,508 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,508 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,508 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-08T22:52:28,508 to the `packages` configuration field. 2025-09-08T22:52:28,508 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,508 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,508 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,509 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-08T22:52:28,509 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-08T22:52:28,509 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,509 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,509 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,510 even if it does not contain any `.py` files. 2025-09-08T22:52:28,510 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,510 directory, all directories are treated like packages. 2025-09-08T22:52:28,510 ******************************************************************************** 2025-09-08T22:52:28,510 !! 2025-09-08T22:52:28,510 check.warn(importable) 2025-09-08T22:52:28,510 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:52:28,510 !! 2025-09-08T22:52:28,511 ******************************************************************************** 2025-09-08T22:52:28,511 ############################ 2025-09-08T22:52:28,511 # Package would be ignored # 2025-09-08T22:52:28,511 ############################ 2025-09-08T22:52:28,511 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-08T22:52:28,511 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,511 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,511 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-08T22:52:28,511 to the `packages` configuration field. 2025-09-08T22:52:28,512 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,512 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,512 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,512 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-08T22:52:28,512 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-08T22:52:28,512 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,513 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,513 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,513 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,513 even if it does not contain any `.py` files. 2025-09-08T22:52:28,513 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,513 directory, all directories are treated like packages. 2025-09-08T22:52:28,514 ******************************************************************************** 2025-09-08T22:52:28,514 !! 2025-09-08T22:52:28,514 check.warn(importable) 2025-09-08T22:52:28,514 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-08T22:52:28,514 !! 2025-09-08T22:52:28,514 ******************************************************************************** 2025-09-08T22:52:28,514 ############################ 2025-09-08T22:52:28,514 # Package would be ignored # 2025-09-08T22:52:28,514 ############################ 2025-09-08T22:52:28,514 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-08T22:52:28,515 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,515 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,515 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-08T22:52:28,515 to the `packages` configuration field. 2025-09-08T22:52:28,515 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,515 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,515 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,515 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,516 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-08T22:52:28,516 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-08T22:52:28,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,516 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,516 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,517 even if it does not contain any `.py` files. 2025-09-08T22:52:28,517 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,517 directory, all directories are treated like packages. 2025-09-08T22:52:28,517 ******************************************************************************** 2025-09-08T22:52:28,517 !! 2025-09-08T22:52:28,517 check.warn(importable) 2025-09-08T22:52:28,517 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,517 !! 2025-09-08T22:52:28,517 ******************************************************************************** 2025-09-08T22:52:28,518 ############################ 2025-09-08T22:52:28,518 # Package would be ignored # 2025-09-08T22:52:28,518 ############################ 2025-09-08T22:52:28,518 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-08T22:52:28,518 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,518 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,518 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-08T22:52:28,518 to the `packages` configuration field. 2025-09-08T22:52:28,518 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,519 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,519 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,519 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-08T22:52:28,519 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-08T22:52:28,519 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,519 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,519 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,520 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,520 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,520 even if it does not contain any `.py` files. 2025-09-08T22:52:28,520 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,520 directory, all directories are treated like packages. 2025-09-08T22:52:28,520 ******************************************************************************** 2025-09-08T22:52:28,520 !! 2025-09-08T22:52:28,520 check.warn(importable) 2025-09-08T22:52:28,521 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,521 !! 2025-09-08T22:52:28,521 ******************************************************************************** 2025-09-08T22:52:28,521 ############################ 2025-09-08T22:52:28,521 # Package would be ignored # 2025-09-08T22:52:28,521 ############################ 2025-09-08T22:52:28,521 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,521 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,521 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,521 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-08T22:52:28,522 to the `packages` configuration field. 2025-09-08T22:52:28,522 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,522 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,522 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,522 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,522 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-08T22:52:28,522 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-08T22:52:28,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,523 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,523 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,523 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,523 even if it does not contain any `.py` files. 2025-09-08T22:52:28,523 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,523 directory, all directories are treated like packages. 2025-09-08T22:52:28,524 ******************************************************************************** 2025-09-08T22:52:28,524 !! 2025-09-08T22:52:28,524 check.warn(importable) 2025-09-08T22:52:28,524 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,524 !! 2025-09-08T22:52:28,524 ******************************************************************************** 2025-09-08T22:52:28,524 ############################ 2025-09-08T22:52:28,524 # Package would be ignored # 2025-09-08T22:52:28,524 ############################ 2025-09-08T22:52:28,525 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,525 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,525 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,525 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,525 to the `packages` configuration field. 2025-09-08T22:52:28,525 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,525 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,525 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,526 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,526 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-08T22:52:28,526 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,526 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,526 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,526 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,527 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,527 even if it does not contain any `.py` files. 2025-09-08T22:52:28,527 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,527 directory, all directories are treated like packages. 2025-09-08T22:52:28,527 ******************************************************************************** 2025-09-08T22:52:28,527 !! 2025-09-08T22:52:28,527 check.warn(importable) 2025-09-08T22:52:28,527 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,527 !! 2025-09-08T22:52:28,528 ******************************************************************************** 2025-09-08T22:52:28,528 ############################ 2025-09-08T22:52:28,528 # Package would be ignored # 2025-09-08T22:52:28,528 ############################ 2025-09-08T22:52:28,528 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-08T22:52:28,528 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,528 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,528 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-08T22:52:28,528 to the `packages` configuration field. 2025-09-08T22:52:28,528 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,529 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,529 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,529 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-08T22:52:28,529 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-08T22:52:28,529 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,530 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,530 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,530 even if it does not contain any `.py` files. 2025-09-08T22:52:28,530 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,530 directory, all directories are treated like packages. 2025-09-08T22:52:28,530 ******************************************************************************** 2025-09-08T22:52:28,531 !! 2025-09-08T22:52:28,531 check.warn(importable) 2025-09-08T22:52:28,531 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,531 !! 2025-09-08T22:52:28,531 ******************************************************************************** 2025-09-08T22:52:28,531 ############################ 2025-09-08T22:52:28,531 # Package would be ignored # 2025-09-08T22:52:28,531 ############################ 2025-09-08T22:52:28,531 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-08T22:52:28,531 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,532 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,532 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-08T22:52:28,532 to the `packages` configuration field. 2025-09-08T22:52:28,532 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,532 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,532 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,533 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-08T22:52:28,533 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-08T22:52:28,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,533 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,533 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,533 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,534 even if it does not contain any `.py` files. 2025-09-08T22:52:28,534 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,534 directory, all directories are treated like packages. 2025-09-08T22:52:28,534 ******************************************************************************** 2025-09-08T22:52:28,534 !! 2025-09-08T22:52:28,534 check.warn(importable) 2025-09-08T22:52:28,534 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,534 !! 2025-09-08T22:52:28,534 ******************************************************************************** 2025-09-08T22:52:28,534 ############################ 2025-09-08T22:52:28,534 # Package would be ignored # 2025-09-08T22:52:28,535 ############################ 2025-09-08T22:52:28,535 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,535 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,535 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,535 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-08T22:52:28,535 to the `packages` configuration field. 2025-09-08T22:52:28,535 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,535 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,536 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,536 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,536 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-08T22:52:28,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,536 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,536 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,536 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,537 even if it does not contain any `.py` files. 2025-09-08T22:52:28,537 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,537 directory, all directories are treated like packages. 2025-09-08T22:52:28,537 ******************************************************************************** 2025-09-08T22:52:28,537 !! 2025-09-08T22:52:28,537 check.warn(importable) 2025-09-08T22:52:28,538 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,538 !! 2025-09-08T22:52:28,538 ******************************************************************************** 2025-09-08T22:52:28,538 ############################ 2025-09-08T22:52:28,538 # Package would be ignored # 2025-09-08T22:52:28,538 ############################ 2025-09-08T22:52:28,538 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-08T22:52:28,538 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,538 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,539 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-08T22:52:28,539 to the `packages` configuration field. 2025-09-08T22:52:28,539 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,539 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,539 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,539 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-08T22:52:28,540 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-08T22:52:28,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,540 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,540 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,540 even if it does not contain any `.py` files. 2025-09-08T22:52:28,541 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,541 directory, all directories are treated like packages. 2025-09-08T22:52:28,541 ******************************************************************************** 2025-09-08T22:52:28,541 !! 2025-09-08T22:52:28,541 check.warn(importable) 2025-09-08T22:52:28,541 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,541 !! 2025-09-08T22:52:28,541 ******************************************************************************** 2025-09-08T22:52:28,541 ############################ 2025-09-08T22:52:28,541 # Package would be ignored # 2025-09-08T22:52:28,542 ############################ 2025-09-08T22:52:28,542 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-08T22:52:28,542 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,542 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,542 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-08T22:52:28,542 to the `packages` configuration field. 2025-09-08T22:52:28,542 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,542 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,543 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,543 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,543 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-08T22:52:28,543 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-08T22:52:28,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,543 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,543 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,544 even if it does not contain any `.py` files. 2025-09-08T22:52:28,544 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,544 directory, all directories are treated like packages. 2025-09-08T22:52:28,544 ******************************************************************************** 2025-09-08T22:52:28,544 !! 2025-09-08T22:52:28,544 check.warn(importable) 2025-09-08T22:52:28,544 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,545 !! 2025-09-08T22:52:28,545 ******************************************************************************** 2025-09-08T22:52:28,545 ############################ 2025-09-08T22:52:28,545 # Package would be ignored # 2025-09-08T22:52:28,545 ############################ 2025-09-08T22:52:28,545 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,545 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,545 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,545 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-08T22:52:28,545 to the `packages` configuration field. 2025-09-08T22:52:28,546 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,546 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,546 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,546 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,546 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-08T22:52:28,546 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,546 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,547 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,547 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,547 even if it does not contain any `.py` files. 2025-09-08T22:52:28,547 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,547 directory, all directories are treated like packages. 2025-09-08T22:52:28,547 ******************************************************************************** 2025-09-08T22:52:28,548 !! 2025-09-08T22:52:28,548 check.warn(importable) 2025-09-08T22:52:28,548 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,548 !! 2025-09-08T22:52:28,548 ******************************************************************************** 2025-09-08T22:52:28,548 ############################ 2025-09-08T22:52:28,548 # Package would be ignored # 2025-09-08T22:52:28,548 ############################ 2025-09-08T22:52:28,548 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-08T22:52:28,548 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,549 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,549 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-08T22:52:28,549 to the `packages` configuration field. 2025-09-08T22:52:28,549 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,549 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,549 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,550 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-08T22:52:28,550 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-08T22:52:28,550 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,550 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,550 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,551 even if it does not contain any `.py` files. 2025-09-08T22:52:28,551 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,551 directory, all directories are treated like packages. 2025-09-08T22:52:28,551 ******************************************************************************** 2025-09-08T22:52:28,551 !! 2025-09-08T22:52:28,551 check.warn(importable) 2025-09-08T22:52:28,551 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,551 !! 2025-09-08T22:52:28,551 ******************************************************************************** 2025-09-08T22:52:28,552 ############################ 2025-09-08T22:52:28,552 # Package would be ignored # 2025-09-08T22:52:28,552 ############################ 2025-09-08T22:52:28,552 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-08T22:52:28,552 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,552 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-08T22:52:28,552 to the `packages` configuration field. 2025-09-08T22:52:28,552 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,553 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,553 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,553 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-08T22:52:28,553 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-08T22:52:28,553 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,553 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,554 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,554 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,554 even if it does not contain any `.py` files. 2025-09-08T22:52:28,554 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,554 directory, all directories are treated like packages. 2025-09-08T22:52:28,554 ******************************************************************************** 2025-09-08T22:52:28,554 !! 2025-09-08T22:52:28,555 check.warn(importable) 2025-09-08T22:52:28,555 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,555 !! 2025-09-08T22:52:28,555 ******************************************************************************** 2025-09-08T22:52:28,555 ############################ 2025-09-08T22:52:28,555 # Package would be ignored # 2025-09-08T22:52:28,555 ############################ 2025-09-08T22:52:28,555 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,555 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,555 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,555 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-08T22:52:28,556 to the `packages` configuration field. 2025-09-08T22:52:28,556 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,556 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,556 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,556 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,556 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,556 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-08T22:52:28,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,557 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,557 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,557 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,557 even if it does not contain any `.py` files. 2025-09-08T22:52:28,557 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,558 directory, all directories are treated like packages. 2025-09-08T22:52:28,558 ******************************************************************************** 2025-09-08T22:52:28,558 !! 2025-09-08T22:52:28,558 check.warn(importable) 2025-09-08T22:52:28,558 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,558 !! 2025-09-08T22:52:28,558 ******************************************************************************** 2025-09-08T22:52:28,558 ############################ 2025-09-08T22:52:28,558 # Package would be ignored # 2025-09-08T22:52:28,558 ############################ 2025-09-08T22:52:28,558 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-08T22:52:28,559 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,559 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,559 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-08T22:52:28,559 to the `packages` configuration field. 2025-09-08T22:52:28,559 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,559 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,559 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,559 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,560 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-08T22:52:28,560 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-08T22:52:28,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,560 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,560 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,560 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,560 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,561 even if it does not contain any `.py` files. 2025-09-08T22:52:28,561 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,561 directory, all directories are treated like packages. 2025-09-08T22:52:28,561 ******************************************************************************** 2025-09-08T22:52:28,561 !! 2025-09-08T22:52:28,561 check.warn(importable) 2025-09-08T22:52:28,561 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,561 !! 2025-09-08T22:52:28,562 ******************************************************************************** 2025-09-08T22:52:28,562 ############################ 2025-09-08T22:52:28,562 # Package would be ignored # 2025-09-08T22:52:28,562 ############################ 2025-09-08T22:52:28,562 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-08T22:52:28,562 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,562 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,562 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-08T22:52:28,562 to the `packages` configuration field. 2025-09-08T22:52:28,563 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,563 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,563 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,563 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,563 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-08T22:52:28,563 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-08T22:52:28,563 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,563 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,564 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,564 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,564 even if it does not contain any `.py` files. 2025-09-08T22:52:28,564 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,564 directory, all directories are treated like packages. 2025-09-08T22:52:28,564 ******************************************************************************** 2025-09-08T22:52:28,565 !! 2025-09-08T22:52:28,565 check.warn(importable) 2025-09-08T22:52:28,565 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,565 !! 2025-09-08T22:52:28,565 ******************************************************************************** 2025-09-08T22:52:28,565 ############################ 2025-09-08T22:52:28,565 # Package would be ignored # 2025-09-08T22:52:28,565 ############################ 2025-09-08T22:52:28,565 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,565 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,566 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,566 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-08T22:52:28,566 to the `packages` configuration field. 2025-09-08T22:52:28,566 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,566 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,566 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,566 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,567 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,567 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-08T22:52:28,567 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,567 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,567 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,567 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,567 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,567 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,568 even if it does not contain any `.py` files. 2025-09-08T22:52:28,568 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,568 directory, all directories are treated like packages. 2025-09-08T22:52:28,568 ******************************************************************************** 2025-09-08T22:52:28,568 !! 2025-09-08T22:52:28,568 check.warn(importable) 2025-09-08T22:52:28,568 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,568 !! 2025-09-08T22:52:28,568 ******************************************************************************** 2025-09-08T22:52:28,568 ############################ 2025-09-08T22:52:28,569 # Package would be ignored # 2025-09-08T22:52:28,569 ############################ 2025-09-08T22:52:28,569 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-08T22:52:28,569 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,569 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,569 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-08T22:52:28,569 to the `packages` configuration field. 2025-09-08T22:52:28,569 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,569 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,570 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,570 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-08T22:52:28,570 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-08T22:52:28,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,570 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,570 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,571 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,571 even if it does not contain any `.py` files. 2025-09-08T22:52:28,571 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,571 directory, all directories are treated like packages. 2025-09-08T22:52:28,571 ******************************************************************************** 2025-09-08T22:52:28,571 !! 2025-09-08T22:52:28,571 check.warn(importable) 2025-09-08T22:52:28,571 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,572 !! 2025-09-08T22:52:28,572 ******************************************************************************** 2025-09-08T22:52:28,572 ############################ 2025-09-08T22:52:28,572 # Package would be ignored # 2025-09-08T22:52:28,572 ############################ 2025-09-08T22:52:28,572 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,572 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,572 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,572 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-08T22:52:28,572 to the `packages` configuration field. 2025-09-08T22:52:28,573 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,573 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,573 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,573 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-08T22:52:28,573 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-08T22:52:28,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,574 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,574 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,574 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,574 even if it does not contain any `.py` files. 2025-09-08T22:52:28,574 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,575 directory, all directories are treated like packages. 2025-09-08T22:52:28,575 ******************************************************************************** 2025-09-08T22:52:28,575 !! 2025-09-08T22:52:28,575 check.warn(importable) 2025-09-08T22:52:28,575 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,575 !! 2025-09-08T22:52:28,575 ******************************************************************************** 2025-09-08T22:52:28,575 ############################ 2025-09-08T22:52:28,575 # Package would be ignored # 2025-09-08T22:52:28,575 ############################ 2025-09-08T22:52:28,576 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,576 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,576 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,576 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,576 to the `packages` configuration field. 2025-09-08T22:52:28,576 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,576 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,576 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,576 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,577 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,577 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-08T22:52:28,577 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,577 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,577 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,577 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,578 even if it does not contain any `.py` files. 2025-09-08T22:52:28,578 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,578 directory, all directories are treated like packages. 2025-09-08T22:52:28,578 ******************************************************************************** 2025-09-08T22:52:28,578 !! 2025-09-08T22:52:28,578 check.warn(importable) 2025-09-08T22:52:28,578 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,578 !! 2025-09-08T22:52:28,579 ******************************************************************************** 2025-09-08T22:52:28,579 ############################ 2025-09-08T22:52:28,579 # Package would be ignored # 2025-09-08T22:52:28,579 ############################ 2025-09-08T22:52:28,579 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-08T22:52:28,579 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,579 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,579 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-08T22:52:28,579 to the `packages` configuration field. 2025-09-08T22:52:28,580 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,580 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,580 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,580 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,580 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-08T22:52:28,580 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-08T22:52:28,580 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,581 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,581 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,581 even if it does not contain any `.py` files. 2025-09-08T22:52:28,581 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,581 directory, all directories are treated like packages. 2025-09-08T22:52:28,581 ******************************************************************************** 2025-09-08T22:52:28,582 !! 2025-09-08T22:52:28,582 check.warn(importable) 2025-09-08T22:52:28,582 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,582 !! 2025-09-08T22:52:28,582 ******************************************************************************** 2025-09-08T22:52:28,582 ############################ 2025-09-08T22:52:28,582 # Package would be ignored # 2025-09-08T22:52:28,582 ############################ 2025-09-08T22:52:28,582 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-08T22:52:28,582 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,583 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,583 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-08T22:52:28,583 to the `packages` configuration field. 2025-09-08T22:52:28,583 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,583 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,583 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,583 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,583 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,584 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-08T22:52:28,584 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-08T22:52:28,584 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,584 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,584 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,584 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,584 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,585 even if it does not contain any `.py` files. 2025-09-08T22:52:28,585 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,585 directory, all directories are treated like packages. 2025-09-08T22:52:28,585 ******************************************************************************** 2025-09-08T22:52:28,585 !! 2025-09-08T22:52:28,585 check.warn(importable) 2025-09-08T22:52:28,585 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,585 !! 2025-09-08T22:52:28,585 ******************************************************************************** 2025-09-08T22:52:28,585 ############################ 2025-09-08T22:52:28,586 # Package would be ignored # 2025-09-08T22:52:28,586 ############################ 2025-09-08T22:52:28,586 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,586 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,586 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,586 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-08T22:52:28,586 to the `packages` configuration field. 2025-09-08T22:52:28,586 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,587 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,587 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,587 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,587 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,587 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-08T22:52:28,587 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,587 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,587 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,588 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,588 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,588 even if it does not contain any `.py` files. 2025-09-08T22:52:28,588 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,588 directory, all directories are treated like packages. 2025-09-08T22:52:28,588 ******************************************************************************** 2025-09-08T22:52:28,588 !! 2025-09-08T22:52:28,589 check.warn(importable) 2025-09-08T22:52:28,589 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,589 !! 2025-09-08T22:52:28,589 ******************************************************************************** 2025-09-08T22:52:28,589 ############################ 2025-09-08T22:52:28,589 # Package would be ignored # 2025-09-08T22:52:28,589 ############################ 2025-09-08T22:52:28,589 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-08T22:52:28,589 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,589 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,590 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-08T22:52:28,590 to the `packages` configuration field. 2025-09-08T22:52:28,590 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,590 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,590 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,590 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,590 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-08T22:52:28,591 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-08T22:52:28,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,591 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,591 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,591 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,591 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,591 even if it does not contain any `.py` files. 2025-09-08T22:52:28,591 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,592 directory, all directories are treated like packages. 2025-09-08T22:52:28,592 ******************************************************************************** 2025-09-08T22:52:28,592 !! 2025-09-08T22:52:28,592 check.warn(importable) 2025-09-08T22:52:28,592 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,592 !! 2025-09-08T22:52:28,592 ******************************************************************************** 2025-09-08T22:52:28,592 ############################ 2025-09-08T22:52:28,592 # Package would be ignored # 2025-09-08T22:52:28,592 ############################ 2025-09-08T22:52:28,593 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-08T22:52:28,593 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,593 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,593 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-08T22:52:28,593 to the `packages` configuration field. 2025-09-08T22:52:28,593 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,593 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,593 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,593 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,594 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-08T22:52:28,594 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-08T22:52:28,594 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,594 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,594 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,594 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,595 even if it does not contain any `.py` files. 2025-09-08T22:52:28,595 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,595 directory, all directories are treated like packages. 2025-09-08T22:52:28,595 ******************************************************************************** 2025-09-08T22:52:28,595 !! 2025-09-08T22:52:28,595 check.warn(importable) 2025-09-08T22:52:28,595 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,595 !! 2025-09-08T22:52:28,596 ******************************************************************************** 2025-09-08T22:52:28,596 ############################ 2025-09-08T22:52:28,596 # Package would be ignored # 2025-09-08T22:52:28,596 ############################ 2025-09-08T22:52:28,596 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,596 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,596 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,596 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-08T22:52:28,596 to the `packages` configuration field. 2025-09-08T22:52:28,596 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,597 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,597 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,597 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,597 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-08T22:52:28,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,597 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,598 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,598 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,598 even if it does not contain any `.py` files. 2025-09-08T22:52:28,598 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,598 directory, all directories are treated like packages. 2025-09-08T22:52:28,598 ******************************************************************************** 2025-09-08T22:52:28,599 !! 2025-09-08T22:52:28,599 check.warn(importable) 2025-09-08T22:52:28,599 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,599 !! 2025-09-08T22:52:28,599 ******************************************************************************** 2025-09-08T22:52:28,599 ############################ 2025-09-08T22:52:28,599 # Package would be ignored # 2025-09-08T22:52:28,599 ############################ 2025-09-08T22:52:28,599 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-08T22:52:28,599 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,600 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,600 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-08T22:52:28,600 to the `packages` configuration field. 2025-09-08T22:52:28,600 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,600 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,600 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,600 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,600 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,601 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-08T22:52:28,601 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-08T22:52:28,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,601 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,601 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,601 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,602 even if it does not contain any `.py` files. 2025-09-08T22:52:28,602 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,602 directory, all directories are treated like packages. 2025-09-08T22:52:28,602 ******************************************************************************** 2025-09-08T22:52:28,602 !! 2025-09-08T22:52:28,602 check.warn(importable) 2025-09-08T22:52:28,602 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,602 !! 2025-09-08T22:52:28,602 ******************************************************************************** 2025-09-08T22:52:28,603 ############################ 2025-09-08T22:52:28,603 # Package would be ignored # 2025-09-08T22:52:28,603 ############################ 2025-09-08T22:52:28,603 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,603 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,603 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,603 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-08T22:52:28,603 to the `packages` configuration field. 2025-09-08T22:52:28,603 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,603 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,604 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,604 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-08T22:52:28,604 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-08T22:52:28,604 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,604 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,604 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,605 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,605 even if it does not contain any `.py` files. 2025-09-08T22:52:28,605 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,605 directory, all directories are treated like packages. 2025-09-08T22:52:28,605 ******************************************************************************** 2025-09-08T22:52:28,605 !! 2025-09-08T22:52:28,605 check.warn(importable) 2025-09-08T22:52:28,606 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,606 !! 2025-09-08T22:52:28,606 ******************************************************************************** 2025-09-08T22:52:28,606 ############################ 2025-09-08T22:52:28,606 # Package would be ignored # 2025-09-08T22:52:28,606 ############################ 2025-09-08T22:52:28,606 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,606 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,606 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,606 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,606 to the `packages` configuration field. 2025-09-08T22:52:28,607 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,607 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,607 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,607 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,607 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-08T22:52:28,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,608 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,608 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,608 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,608 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,608 even if it does not contain any `.py` files. 2025-09-08T22:52:28,608 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,608 directory, all directories are treated like packages. 2025-09-08T22:52:28,609 ******************************************************************************** 2025-09-08T22:52:28,609 !! 2025-09-08T22:52:28,609 check.warn(importable) 2025-09-08T22:52:28,609 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,609 !! 2025-09-08T22:52:28,609 ******************************************************************************** 2025-09-08T22:52:28,609 ############################ 2025-09-08T22:52:28,609 # Package would be ignored # 2025-09-08T22:52:28,609 ############################ 2025-09-08T22:52:28,609 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-08T22:52:28,610 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,610 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,610 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-08T22:52:28,610 to the `packages` configuration field. 2025-09-08T22:52:28,610 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,610 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,610 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,610 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,611 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,611 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-08T22:52:28,611 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-08T22:52:28,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,611 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,611 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,612 even if it does not contain any `.py` files. 2025-09-08T22:52:28,612 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,612 directory, all directories are treated like packages. 2025-09-08T22:52:28,612 ******************************************************************************** 2025-09-08T22:52:28,612 !! 2025-09-08T22:52:28,612 check.warn(importable) 2025-09-08T22:52:28,612 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,612 !! 2025-09-08T22:52:28,613 ******************************************************************************** 2025-09-08T22:52:28,613 ############################ 2025-09-08T22:52:28,613 # Package would be ignored # 2025-09-08T22:52:28,613 ############################ 2025-09-08T22:52:28,613 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-08T22:52:28,613 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,613 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,613 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-08T22:52:28,613 to the `packages` configuration field. 2025-09-08T22:52:28,613 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,614 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,614 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,614 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,614 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-08T22:52:28,614 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-08T22:52:28,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,614 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,615 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,615 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,615 even if it does not contain any `.py` files. 2025-09-08T22:52:28,615 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,615 directory, all directories are treated like packages. 2025-09-08T22:52:28,615 ******************************************************************************** 2025-09-08T22:52:28,615 !! 2025-09-08T22:52:28,616 check.warn(importable) 2025-09-08T22:52:28,616 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,616 !! 2025-09-08T22:52:28,616 ******************************************************************************** 2025-09-08T22:52:28,616 ############################ 2025-09-08T22:52:28,616 # Package would be ignored # 2025-09-08T22:52:28,616 ############################ 2025-09-08T22:52:28,616 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,616 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,616 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,617 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-08T22:52:28,617 to the `packages` configuration field. 2025-09-08T22:52:28,617 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,617 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,617 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,617 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,617 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,618 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-08T22:52:28,618 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,618 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,618 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,618 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,618 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,618 even if it does not contain any `.py` files. 2025-09-08T22:52:28,618 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,619 directory, all directories are treated like packages. 2025-09-08T22:52:28,619 ******************************************************************************** 2025-09-08T22:52:28,619 !! 2025-09-08T22:52:28,619 check.warn(importable) 2025-09-08T22:52:28,619 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-08T22:52:28,619 !! 2025-09-08T22:52:28,619 ******************************************************************************** 2025-09-08T22:52:28,619 ############################ 2025-09-08T22:52:28,619 # Package would be ignored # 2025-09-08T22:52:28,619 ############################ 2025-09-08T22:52:28,620 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-08T22:52:28,620 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,620 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,620 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-08T22:52:28,620 to the `packages` configuration field. 2025-09-08T22:52:28,620 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,620 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,620 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,621 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,621 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-08T22:52:28,621 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-08T22:52:28,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,621 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,621 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,621 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,622 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,622 even if it does not contain any `.py` files. 2025-09-08T22:52:28,622 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,622 directory, all directories are treated like packages. 2025-09-08T22:52:28,622 ******************************************************************************** 2025-09-08T22:52:28,622 !! 2025-09-08T22:52:28,622 check.warn(importable) 2025-09-08T22:52:28,622 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,622 !! 2025-09-08T22:52:28,623 ******************************************************************************** 2025-09-08T22:52:28,623 ############################ 2025-09-08T22:52:28,623 # Package would be ignored # 2025-09-08T22:52:28,623 ############################ 2025-09-08T22:52:28,623 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-08T22:52:28,623 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,623 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,623 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-08T22:52:28,623 to the `packages` configuration field. 2025-09-08T22:52:28,624 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,624 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,624 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,624 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,624 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-08T22:52:28,624 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-08T22:52:28,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,625 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,625 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,625 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,625 even if it does not contain any `.py` files. 2025-09-08T22:52:28,625 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,625 directory, all directories are treated like packages. 2025-09-08T22:52:28,625 ******************************************************************************** 2025-09-08T22:52:28,626 !! 2025-09-08T22:52:28,626 check.warn(importable) 2025-09-08T22:52:28,626 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-08T22:52:28,626 !! 2025-09-08T22:52:28,626 ******************************************************************************** 2025-09-08T22:52:28,626 ############################ 2025-09-08T22:52:28,626 # Package would be ignored # 2025-09-08T22:52:28,626 ############################ 2025-09-08T22:52:28,626 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-08T22:52:28,626 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,627 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,627 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-08T22:52:28,627 to the `packages` configuration field. 2025-09-08T22:52:28,627 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,627 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,627 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,628 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-08T22:52:28,628 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-08T22:52:28,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,628 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,628 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,628 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,628 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,629 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,629 even if it does not contain any `.py` files. 2025-09-08T22:52:28,629 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,629 directory, all directories are treated like packages. 2025-09-08T22:52:28,629 ******************************************************************************** 2025-09-08T22:52:28,629 !! 2025-09-08T22:52:28,629 check.warn(importable) 2025-09-08T22:52:28,629 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,629 !! 2025-09-08T22:52:28,629 ******************************************************************************** 2025-09-08T22:52:28,630 ############################ 2025-09-08T22:52:28,630 # Package would be ignored # 2025-09-08T22:52:28,630 ############################ 2025-09-08T22:52:28,630 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-08T22:52:28,630 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,630 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,630 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-08T22:52:28,630 to the `packages` configuration field. 2025-09-08T22:52:28,630 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,631 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,631 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,631 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,631 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-08T22:52:28,631 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-08T22:52:28,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,631 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,632 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,632 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,632 even if it does not contain any `.py` files. 2025-09-08T22:52:28,632 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,632 directory, all directories are treated like packages. 2025-09-08T22:52:28,632 ******************************************************************************** 2025-09-08T22:52:28,632 !! 2025-09-08T22:52:28,632 check.warn(importable) 2025-09-08T22:52:28,633 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,633 !! 2025-09-08T22:52:28,633 ******************************************************************************** 2025-09-08T22:52:28,633 ############################ 2025-09-08T22:52:28,633 # Package would be ignored # 2025-09-08T22:52:28,633 ############################ 2025-09-08T22:52:28,633 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-08T22:52:28,633 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,633 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,633 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-08T22:52:28,634 to the `packages` configuration field. 2025-09-08T22:52:28,634 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,634 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,634 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,634 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,634 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,634 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-08T22:52:28,634 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-08T22:52:28,635 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,635 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,635 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,635 even if it does not contain any `.py` files. 2025-09-08T22:52:28,635 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,636 directory, all directories are treated like packages. 2025-09-08T22:52:28,636 ******************************************************************************** 2025-09-08T22:52:28,636 !! 2025-09-08T22:52:28,636 check.warn(importable) 2025-09-08T22:52:28,636 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,636 !! 2025-09-08T22:52:28,636 ******************************************************************************** 2025-09-08T22:52:28,636 ############################ 2025-09-08T22:52:28,636 # Package would be ignored # 2025-09-08T22:52:28,637 ############################ 2025-09-08T22:52:28,637 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,637 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,637 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,637 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-08T22:52:28,637 to the `packages` configuration field. 2025-09-08T22:52:28,637 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,637 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,637 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,638 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,638 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-08T22:52:28,638 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-08T22:52:28,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,638 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,638 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,639 even if it does not contain any `.py` files. 2025-09-08T22:52:28,639 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,639 directory, all directories are treated like packages. 2025-09-08T22:52:28,639 ******************************************************************************** 2025-09-08T22:52:28,639 !! 2025-09-08T22:52:28,639 check.warn(importable) 2025-09-08T22:52:28,639 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-08T22:52:28,640 !! 2025-09-08T22:52:28,640 ******************************************************************************** 2025-09-08T22:52:28,640 ############################ 2025-09-08T22:52:28,640 # Package would be ignored # 2025-09-08T22:52:28,640 ############################ 2025-09-08T22:52:28,640 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-08T22:52:28,640 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,640 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,640 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-08T22:52:28,640 to the `packages` configuration field. 2025-09-08T22:52:28,641 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,641 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,641 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,641 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,641 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-08T22:52:28,641 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-08T22:52:28,641 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,642 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,642 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,642 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,642 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,642 even if it does not contain any `.py` files. 2025-09-08T22:52:28,642 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,642 directory, all directories are treated like packages. 2025-09-08T22:52:28,642 ******************************************************************************** 2025-09-08T22:52:28,643 !! 2025-09-08T22:52:28,643 check.warn(importable) 2025-09-08T22:52:28,643 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,643 !! 2025-09-08T22:52:28,643 ******************************************************************************** 2025-09-08T22:52:28,643 ############################ 2025-09-08T22:52:28,643 # Package would be ignored # 2025-09-08T22:52:28,643 ############################ 2025-09-08T22:52:28,643 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-08T22:52:28,643 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,644 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,644 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-08T22:52:28,644 to the `packages` configuration field. 2025-09-08T22:52:28,644 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,644 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,644 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,645 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-08T22:52:28,645 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-08T22:52:28,645 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,645 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,645 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,645 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,646 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,646 even if it does not contain any `.py` files. 2025-09-08T22:52:28,646 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,646 directory, all directories are treated like packages. 2025-09-08T22:52:28,646 ******************************************************************************** 2025-09-08T22:52:28,646 !! 2025-09-08T22:52:28,646 check.warn(importable) 2025-09-08T22:52:28,646 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-08T22:52:28,646 !! 2025-09-08T22:52:28,646 ******************************************************************************** 2025-09-08T22:52:28,647 ############################ 2025-09-08T22:52:28,647 # Package would be ignored # 2025-09-08T22:52:28,647 ############################ 2025-09-08T22:52:28,647 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-08T22:52:28,647 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,647 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,647 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-08T22:52:28,647 to the `packages` configuration field. 2025-09-08T22:52:28,647 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,647 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,648 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,648 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,648 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-08T22:52:28,648 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-08T22:52:28,648 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,648 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,648 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,649 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,649 even if it does not contain any `.py` files. 2025-09-08T22:52:28,649 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,649 directory, all directories are treated like packages. 2025-09-08T22:52:28,649 ******************************************************************************** 2025-09-08T22:52:28,650 !! 2025-09-08T22:52:28,650 check.warn(importable) 2025-09-08T22:52:28,650 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,650 !! 2025-09-08T22:52:28,650 ******************************************************************************** 2025-09-08T22:52:28,650 ############################ 2025-09-08T22:52:28,650 # Package would be ignored # 2025-09-08T22:52:28,650 ############################ 2025-09-08T22:52:28,650 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-08T22:52:28,650 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,651 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,651 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-08T22:52:28,651 to the `packages` configuration field. 2025-09-08T22:52:28,651 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,651 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,651 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,652 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-08T22:52:28,652 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-08T22:52:28,652 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,652 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,652 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,652 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,652 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,653 even if it does not contain any `.py` files. 2025-09-08T22:52:28,653 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,653 directory, all directories are treated like packages. 2025-09-08T22:52:28,653 ******************************************************************************** 2025-09-08T22:52:28,653 !! 2025-09-08T22:52:28,653 check.warn(importable) 2025-09-08T22:52:28,653 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,653 !! 2025-09-08T22:52:28,654 ******************************************************************************** 2025-09-08T22:52:28,654 ############################ 2025-09-08T22:52:28,654 # Package would be ignored # 2025-09-08T22:52:28,654 ############################ 2025-09-08T22:52:28,654 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,654 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,654 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,654 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-08T22:52:28,654 to the `packages` configuration field. 2025-09-08T22:52:28,654 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,655 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,655 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,655 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,655 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,655 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-08T22:52:28,655 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-08T22:52:28,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,655 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,656 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,656 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,656 even if it does not contain any `.py` files. 2025-09-08T22:52:28,656 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,656 directory, all directories are treated like packages. 2025-09-08T22:52:28,656 ******************************************************************************** 2025-09-08T22:52:28,656 !! 2025-09-08T22:52:28,657 check.warn(importable) 2025-09-08T22:52:28,657 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,657 !! 2025-09-08T22:52:28,657 ******************************************************************************** 2025-09-08T22:52:28,657 ############################ 2025-09-08T22:52:28,657 # Package would be ignored # 2025-09-08T22:52:28,657 ############################ 2025-09-08T22:52:28,657 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-08T22:52:28,657 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,657 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,658 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-08T22:52:28,658 to the `packages` configuration field. 2025-09-08T22:52:28,658 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,658 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,658 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,658 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,658 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-08T22:52:28,659 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-08T22:52:28,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,659 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,659 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,659 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,659 even if it does not contain any `.py` files. 2025-09-08T22:52:28,659 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,660 directory, all directories are treated like packages. 2025-09-08T22:52:28,660 ******************************************************************************** 2025-09-08T22:52:28,660 !! 2025-09-08T22:52:28,660 check.warn(importable) 2025-09-08T22:52:28,660 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,660 !! 2025-09-08T22:52:28,660 ******************************************************************************** 2025-09-08T22:52:28,660 ############################ 2025-09-08T22:52:28,660 # Package would be ignored # 2025-09-08T22:52:28,661 ############################ 2025-09-08T22:52:28,661 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-08T22:52:28,661 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,661 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,661 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-08T22:52:28,661 to the `packages` configuration field. 2025-09-08T22:52:28,661 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,661 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,662 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,662 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,662 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-08T22:52:28,662 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-08T22:52:28,662 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,662 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,662 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,662 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,663 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,663 even if it does not contain any `.py` files. 2025-09-08T22:52:28,663 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,663 directory, all directories are treated like packages. 2025-09-08T22:52:28,663 ******************************************************************************** 2025-09-08T22:52:28,663 !! 2025-09-08T22:52:28,663 check.warn(importable) 2025-09-08T22:52:28,663 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,664 !! 2025-09-08T22:52:28,664 ******************************************************************************** 2025-09-08T22:52:28,664 ############################ 2025-09-08T22:52:28,664 # Package would be ignored # 2025-09-08T22:52:28,664 ############################ 2025-09-08T22:52:28,664 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,664 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,664 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,664 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,664 to the `packages` configuration field. 2025-09-08T22:52:28,665 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,665 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,665 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,665 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,665 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-08T22:52:28,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,666 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,666 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,666 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,666 even if it does not contain any `.py` files. 2025-09-08T22:52:28,666 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,666 directory, all directories are treated like packages. 2025-09-08T22:52:28,666 ******************************************************************************** 2025-09-08T22:52:28,667 !! 2025-09-08T22:52:28,667 check.warn(importable) 2025-09-08T22:52:28,667 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-08T22:52:28,667 !! 2025-09-08T22:52:28,667 ******************************************************************************** 2025-09-08T22:52:28,667 ############################ 2025-09-08T22:52:28,667 # Package would be ignored # 2025-09-08T22:52:28,667 ############################ 2025-09-08T22:52:28,667 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-08T22:52:28,667 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,668 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,668 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-08T22:52:28,668 to the `packages` configuration field. 2025-09-08T22:52:28,668 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,668 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,668 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,668 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,669 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-08T22:52:28,669 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-08T22:52:28,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,669 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,669 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,669 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,670 even if it does not contain any `.py` files. 2025-09-08T22:52:28,670 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,670 directory, all directories are treated like packages. 2025-09-08T22:52:28,670 ******************************************************************************** 2025-09-08T22:52:28,670 !! 2025-09-08T22:52:28,670 check.warn(importable) 2025-09-08T22:52:28,670 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,670 !! 2025-09-08T22:52:28,670 ******************************************************************************** 2025-09-08T22:52:28,670 ############################ 2025-09-08T22:52:28,670 # Package would be ignored # 2025-09-08T22:52:28,671 ############################ 2025-09-08T22:52:28,671 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-08T22:52:28,671 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,671 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,671 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-08T22:52:28,671 to the `packages` configuration field. 2025-09-08T22:52:28,671 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,671 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,672 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,672 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-08T22:52:28,672 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-08T22:52:28,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,672 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,672 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,673 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,673 even if it does not contain any `.py` files. 2025-09-08T22:52:28,673 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,673 directory, all directories are treated like packages. 2025-09-08T22:52:28,673 ******************************************************************************** 2025-09-08T22:52:28,673 !! 2025-09-08T22:52:28,673 check.warn(importable) 2025-09-08T22:52:28,674 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,674 !! 2025-09-08T22:52:28,674 ******************************************************************************** 2025-09-08T22:52:28,674 ############################ 2025-09-08T22:52:28,674 # Package would be ignored # 2025-09-08T22:52:28,674 ############################ 2025-09-08T22:52:28,674 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,674 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,674 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,674 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-08T22:52:28,675 to the `packages` configuration field. 2025-09-08T22:52:28,675 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,675 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,675 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,675 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-08T22:52:28,675 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-08T22:52:28,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,676 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,676 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,676 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,676 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,676 even if it does not contain any `.py` files. 2025-09-08T22:52:28,676 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,677 directory, all directories are treated like packages. 2025-09-08T22:52:28,677 ******************************************************************************** 2025-09-08T22:52:28,677 !! 2025-09-08T22:52:28,677 check.warn(importable) 2025-09-08T22:52:28,677 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,677 !! 2025-09-08T22:52:28,677 ******************************************************************************** 2025-09-08T22:52:28,677 ############################ 2025-09-08T22:52:28,677 # Package would be ignored # 2025-09-08T22:52:28,677 ############################ 2025-09-08T22:52:28,678 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-08T22:52:28,678 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,678 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,678 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-08T22:52:28,678 to the `packages` configuration field. 2025-09-08T22:52:28,678 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,678 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,678 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,679 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,679 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-08T22:52:28,679 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-08T22:52:28,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,679 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,679 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,680 even if it does not contain any `.py` files. 2025-09-08T22:52:28,680 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,680 directory, all directories are treated like packages. 2025-09-08T22:52:28,680 ******************************************************************************** 2025-09-08T22:52:28,680 !! 2025-09-08T22:52:28,680 check.warn(importable) 2025-09-08T22:52:28,680 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-08T22:52:28,680 !! 2025-09-08T22:52:28,681 ******************************************************************************** 2025-09-08T22:52:28,681 ############################ 2025-09-08T22:52:28,681 # Package would be ignored # 2025-09-08T22:52:28,681 ############################ 2025-09-08T22:52:28,681 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-08T22:52:28,681 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,681 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,681 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-08T22:52:28,681 to the `packages` configuration field. 2025-09-08T22:52:28,681 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,682 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,682 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,682 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-08T22:52:28,682 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-08T22:52:28,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,682 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,683 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,683 even if it does not contain any `.py` files. 2025-09-08T22:52:28,683 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,683 directory, all directories are treated like packages. 2025-09-08T22:52:28,683 ******************************************************************************** 2025-09-08T22:52:28,683 !! 2025-09-08T22:52:28,684 check.warn(importable) 2025-09-08T22:52:28,684 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-08T22:52:28,684 !! 2025-09-08T22:52:28,684 ******************************************************************************** 2025-09-08T22:52:28,684 ############################ 2025-09-08T22:52:28,684 # Package would be ignored # 2025-09-08T22:52:28,684 ############################ 2025-09-08T22:52:28,684 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-08T22:52:28,684 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,684 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,685 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-08T22:52:28,685 to the `packages` configuration field. 2025-09-08T22:52:28,685 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,685 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,685 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,686 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-08T22:52:28,686 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-08T22:52:28,686 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,686 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,686 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,687 even if it does not contain any `.py` files. 2025-09-08T22:52:28,687 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,687 directory, all directories are treated like packages. 2025-09-08T22:52:28,687 ******************************************************************************** 2025-09-08T22:52:28,687 !! 2025-09-08T22:52:28,687 check.warn(importable) 2025-09-08T22:52:28,687 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-08T22:52:28,687 !! 2025-09-08T22:52:28,687 ******************************************************************************** 2025-09-08T22:52:28,688 ############################ 2025-09-08T22:52:28,688 # Package would be ignored # 2025-09-08T22:52:28,688 ############################ 2025-09-08T22:52:28,688 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-08T22:52:28,688 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,688 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,688 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-08T22:52:28,688 to the `packages` configuration field. 2025-09-08T22:52:28,688 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,688 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,689 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,689 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-08T22:52:28,689 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-08T22:52:28,689 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,689 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,689 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,690 even if it does not contain any `.py` files. 2025-09-08T22:52:28,690 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,690 directory, all directories are treated like packages. 2025-09-08T22:52:28,690 ******************************************************************************** 2025-09-08T22:52:28,690 !! 2025-09-08T22:52:28,690 check.warn(importable) 2025-09-08T22:52:28,691 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,691 !! 2025-09-08T22:52:28,691 ******************************************************************************** 2025-09-08T22:52:28,691 ############################ 2025-09-08T22:52:28,691 # Package would be ignored # 2025-09-08T22:52:28,691 ############################ 2025-09-08T22:52:28,691 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,691 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,691 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,691 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-08T22:52:28,692 to the `packages` configuration field. 2025-09-08T22:52:28,692 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,692 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,692 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,692 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,692 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-08T22:52:28,692 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-08T22:52:28,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,693 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,693 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,693 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,693 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,693 even if it does not contain any `.py` files. 2025-09-08T22:52:28,693 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,693 directory, all directories are treated like packages. 2025-09-08T22:52:28,694 ******************************************************************************** 2025-09-08T22:52:28,694 !! 2025-09-08T22:52:28,694 check.warn(importable) 2025-09-08T22:52:28,694 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-08T22:52:28,694 !! 2025-09-08T22:52:28,694 ******************************************************************************** 2025-09-08T22:52:28,694 ############################ 2025-09-08T22:52:28,694 # Package would be ignored # 2025-09-08T22:52:28,694 ############################ 2025-09-08T22:52:28,694 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-08T22:52:28,695 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,695 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,695 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-08T22:52:28,695 to the `packages` configuration field. 2025-09-08T22:52:28,695 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,695 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,695 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,696 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-08T22:52:28,696 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-08T22:52:28,696 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,696 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,696 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,696 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,696 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,697 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,697 even if it does not contain any `.py` files. 2025-09-08T22:52:28,697 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,697 directory, all directories are treated like packages. 2025-09-08T22:52:28,697 ******************************************************************************** 2025-09-08T22:52:28,697 !! 2025-09-08T22:52:28,697 check.warn(importable) 2025-09-08T22:52:28,697 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-08T22:52:28,697 !! 2025-09-08T22:52:28,697 ******************************************************************************** 2025-09-08T22:52:28,698 ############################ 2025-09-08T22:52:28,698 # Package would be ignored # 2025-09-08T22:52:28,698 ############################ 2025-09-08T22:52:28,698 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-08T22:52:28,698 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,698 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,698 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-08T22:52:28,698 to the `packages` configuration field. 2025-09-08T22:52:28,698 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,699 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,699 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,699 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,699 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-08T22:52:28,699 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-08T22:52:28,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,699 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,700 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,700 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,700 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,700 even if it does not contain any `.py` files. 2025-09-08T22:52:28,700 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,700 directory, all directories are treated like packages. 2025-09-08T22:52:28,700 ******************************************************************************** 2025-09-08T22:52:28,701 !! 2025-09-08T22:52:28,701 check.warn(importable) 2025-09-08T22:52:28,701 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-08T22:52:28,701 !! 2025-09-08T22:52:28,701 ******************************************************************************** 2025-09-08T22:52:28,701 ############################ 2025-09-08T22:52:28,701 # Package would be ignored # 2025-09-08T22:52:28,701 ############################ 2025-09-08T22:52:28,701 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-08T22:52:28,701 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,702 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,702 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-08T22:52:28,702 to the `packages` configuration field. 2025-09-08T22:52:28,702 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,702 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,702 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,702 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-08T22:52:28,703 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-08T22:52:28,703 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,703 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,703 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,703 even if it does not contain any `.py` files. 2025-09-08T22:52:28,704 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,704 directory, all directories are treated like packages. 2025-09-08T22:52:28,704 ******************************************************************************** 2025-09-08T22:52:28,704 !! 2025-09-08T22:52:28,704 check.warn(importable) 2025-09-08T22:52:28,704 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-08T22:52:28,704 !! 2025-09-08T22:52:28,704 ******************************************************************************** 2025-09-08T22:52:28,704 ############################ 2025-09-08T22:52:28,704 # Package would be ignored # 2025-09-08T22:52:28,705 ############################ 2025-09-08T22:52:28,705 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-08T22:52:28,705 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,705 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,705 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-08T22:52:28,705 to the `packages` configuration field. 2025-09-08T22:52:28,705 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,705 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,705 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,706 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-08T22:52:28,706 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-08T22:52:28,706 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,706 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,706 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,706 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,707 even if it does not contain any `.py` files. 2025-09-08T22:52:28,707 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,707 directory, all directories are treated like packages. 2025-09-08T22:52:28,707 ******************************************************************************** 2025-09-08T22:52:28,707 !! 2025-09-08T22:52:28,707 check.warn(importable) 2025-09-08T22:52:28,707 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-08T22:52:28,707 !! 2025-09-08T22:52:28,708 ******************************************************************************** 2025-09-08T22:52:28,708 ############################ 2025-09-08T22:52:28,708 # Package would be ignored # 2025-09-08T22:52:28,708 ############################ 2025-09-08T22:52:28,708 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-08T22:52:28,708 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,708 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,708 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-08T22:52:28,708 to the `packages` configuration field. 2025-09-08T22:52:28,708 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,709 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,709 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,709 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,709 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-08T22:52:28,709 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-08T22:52:28,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,710 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,710 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,710 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,710 even if it does not contain any `.py` files. 2025-09-08T22:52:28,710 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,710 directory, all directories are treated like packages. 2025-09-08T22:52:28,710 ******************************************************************************** 2025-09-08T22:52:28,711 !! 2025-09-08T22:52:28,711 check.warn(importable) 2025-09-08T22:52:28,711 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-08T22:52:28,711 !! 2025-09-08T22:52:28,711 ******************************************************************************** 2025-09-08T22:52:28,711 ############################ 2025-09-08T22:52:28,711 # Package would be ignored # 2025-09-08T22:52:28,711 ############################ 2025-09-08T22:52:28,711 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-08T22:52:28,711 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,712 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,712 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-08T22:52:28,712 to the `packages` configuration field. 2025-09-08T22:52:28,712 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,712 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,712 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,713 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-08T22:52:28,713 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-08T22:52:28,713 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,713 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,713 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,713 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,714 even if it does not contain any `.py` files. 2025-09-08T22:52:28,714 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,714 directory, all directories are treated like packages. 2025-09-08T22:52:28,714 ******************************************************************************** 2025-09-08T22:52:28,714 !! 2025-09-08T22:52:28,714 check.warn(importable) 2025-09-08T22:52:28,714 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-08T22:52:28,714 !! 2025-09-08T22:52:28,715 ******************************************************************************** 2025-09-08T22:52:28,715 ############################ 2025-09-08T22:52:28,715 # Package would be ignored # 2025-09-08T22:52:28,715 ############################ 2025-09-08T22:52:28,715 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-08T22:52:28,715 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,715 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,715 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-08T22:52:28,715 to the `packages` configuration field. 2025-09-08T22:52:28,715 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,716 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,716 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,716 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-08T22:52:28,716 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-08T22:52:28,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,716 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,717 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,717 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,717 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,717 even if it does not contain any `.py` files. 2025-09-08T22:52:28,717 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,717 directory, all directories are treated like packages. 2025-09-08T22:52:28,717 ******************************************************************************** 2025-09-08T22:52:28,718 !! 2025-09-08T22:52:28,718 check.warn(importable) 2025-09-08T22:52:28,718 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,718 !! 2025-09-08T22:52:28,718 ******************************************************************************** 2025-09-08T22:52:28,718 ############################ 2025-09-08T22:52:28,718 # Package would be ignored # 2025-09-08T22:52:28,718 ############################ 2025-09-08T22:52:28,718 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,718 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,719 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,719 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-08T22:52:28,719 to the `packages` configuration field. 2025-09-08T22:52:28,719 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,719 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,719 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,720 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-08T22:52:28,720 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-08T22:52:28,720 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,720 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,720 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,720 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,721 even if it does not contain any `.py` files. 2025-09-08T22:52:28,721 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,721 directory, all directories are treated like packages. 2025-09-08T22:52:28,721 ******************************************************************************** 2025-09-08T22:52:28,721 !! 2025-09-08T22:52:28,721 check.warn(importable) 2025-09-08T22:52:28,721 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-08T22:52:28,721 !! 2025-09-08T22:52:28,722 ******************************************************************************** 2025-09-08T22:52:28,722 ############################ 2025-09-08T22:52:28,722 # Package would be ignored # 2025-09-08T22:52:28,722 ############################ 2025-09-08T22:52:28,722 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-08T22:52:28,722 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,722 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,722 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-08T22:52:28,722 to the `packages` configuration field. 2025-09-08T22:52:28,723 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,723 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,723 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,723 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-08T22:52:28,723 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-08T22:52:28,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,724 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,724 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,724 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,724 even if it does not contain any `.py` files. 2025-09-08T22:52:28,724 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,724 directory, all directories are treated like packages. 2025-09-08T22:52:28,724 ******************************************************************************** 2025-09-08T22:52:28,725 !! 2025-09-08T22:52:28,725 check.warn(importable) 2025-09-08T22:52:28,725 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-08T22:52:28,725 !! 2025-09-08T22:52:28,725 ******************************************************************************** 2025-09-08T22:52:28,725 ############################ 2025-09-08T22:52:28,725 # Package would be ignored # 2025-09-08T22:52:28,725 ############################ 2025-09-08T22:52:28,725 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-08T22:52:28,725 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,726 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,726 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-08T22:52:28,726 to the `packages` configuration field. 2025-09-08T22:52:28,726 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,726 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,726 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,727 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-08T22:52:28,727 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-08T22:52:28,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,727 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,727 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,728 even if it does not contain any `.py` files. 2025-09-08T22:52:28,728 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,728 directory, all directories are treated like packages. 2025-09-08T22:52:28,728 ******************************************************************************** 2025-09-08T22:52:28,728 !! 2025-09-08T22:52:28,728 check.warn(importable) 2025-09-08T22:52:28,728 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-08T22:52:28,728 !! 2025-09-08T22:52:28,728 ******************************************************************************** 2025-09-08T22:52:28,728 ############################ 2025-09-08T22:52:28,729 # Package would be ignored # 2025-09-08T22:52:28,729 ############################ 2025-09-08T22:52:28,729 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-08T22:52:28,729 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,729 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,729 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-08T22:52:28,729 to the `packages` configuration field. 2025-09-08T22:52:28,729 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,729 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,730 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,730 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-08T22:52:28,730 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-08T22:52:28,730 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,730 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,730 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,730 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,731 even if it does not contain any `.py` files. 2025-09-08T22:52:28,731 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,731 directory, all directories are treated like packages. 2025-09-08T22:52:28,731 ******************************************************************************** 2025-09-08T22:52:28,731 !! 2025-09-08T22:52:28,731 check.warn(importable) 2025-09-08T22:52:28,731 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,732 !! 2025-09-08T22:52:28,732 ******************************************************************************** 2025-09-08T22:52:28,732 ############################ 2025-09-08T22:52:28,732 # Package would be ignored # 2025-09-08T22:52:28,732 ############################ 2025-09-08T22:52:28,732 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-08T22:52:28,732 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,732 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,732 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-08T22:52:28,732 to the `packages` configuration field. 2025-09-08T22:52:28,733 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,733 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,733 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,733 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-08T22:52:28,733 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-08T22:52:28,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,734 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,734 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,734 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,734 even if it does not contain any `.py` files. 2025-09-08T22:52:28,734 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,735 directory, all directories are treated like packages. 2025-09-08T22:52:28,735 ******************************************************************************** 2025-09-08T22:52:28,735 !! 2025-09-08T22:52:28,735 check.warn(importable) 2025-09-08T22:52:28,735 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-08T22:52:28,735 !! 2025-09-08T22:52:28,735 ******************************************************************************** 2025-09-08T22:52:28,735 ############################ 2025-09-08T22:52:28,735 # Package would be ignored # 2025-09-08T22:52:28,735 ############################ 2025-09-08T22:52:28,736 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-08T22:52:28,736 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,736 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,736 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-08T22:52:28,736 to the `packages` configuration field. 2025-09-08T22:52:28,736 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,736 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,736 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,737 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,737 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-08T22:52:28,737 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-08T22:52:28,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,737 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,737 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,738 even if it does not contain any `.py` files. 2025-09-08T22:52:28,738 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,738 directory, all directories are treated like packages. 2025-09-08T22:52:28,738 ******************************************************************************** 2025-09-08T22:52:28,738 !! 2025-09-08T22:52:28,738 check.warn(importable) 2025-09-08T22:52:28,738 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,739 !! 2025-09-08T22:52:28,739 ******************************************************************************** 2025-09-08T22:52:28,739 ############################ 2025-09-08T22:52:28,739 # Package would be ignored # 2025-09-08T22:52:28,739 ############################ 2025-09-08T22:52:28,739 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-08T22:52:28,739 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,739 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-08T22:52:28,739 to the `packages` configuration field. 2025-09-08T22:52:28,740 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,740 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,740 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,740 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-08T22:52:28,740 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-08T22:52:28,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,741 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,741 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,741 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,741 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,741 even if it does not contain any `.py` files. 2025-09-08T22:52:28,741 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,741 directory, all directories are treated like packages. 2025-09-08T22:52:28,742 ******************************************************************************** 2025-09-08T22:52:28,742 !! 2025-09-08T22:52:28,742 check.warn(importable) 2025-09-08T22:52:28,742 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,742 !! 2025-09-08T22:52:28,742 ******************************************************************************** 2025-09-08T22:52:28,742 ############################ 2025-09-08T22:52:28,742 # Package would be ignored # 2025-09-08T22:52:28,742 ############################ 2025-09-08T22:52:28,742 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-08T22:52:28,743 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,743 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,743 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-08T22:52:28,743 to the `packages` configuration field. 2025-09-08T22:52:28,743 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,743 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,743 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,744 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,744 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-08T22:52:28,744 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-08T22:52:28,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,744 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,744 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,745 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,745 even if it does not contain any `.py` files. 2025-09-08T22:52:28,745 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,745 directory, all directories are treated like packages. 2025-09-08T22:52:28,745 ******************************************************************************** 2025-09-08T22:52:28,745 !! 2025-09-08T22:52:28,745 check.warn(importable) 2025-09-08T22:52:28,745 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,745 !! 2025-09-08T22:52:28,745 ******************************************************************************** 2025-09-08T22:52:28,746 ############################ 2025-09-08T22:52:28,746 # Package would be ignored # 2025-09-08T22:52:28,746 ############################ 2025-09-08T22:52:28,746 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-08T22:52:28,746 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,746 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,746 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-08T22:52:28,746 to the `packages` configuration field. 2025-09-08T22:52:28,746 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,747 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,747 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,747 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-08T22:52:28,747 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-08T22:52:28,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,747 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,748 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,748 even if it does not contain any `.py` files. 2025-09-08T22:52:28,748 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,748 directory, all directories are treated like packages. 2025-09-08T22:52:28,748 ******************************************************************************** 2025-09-08T22:52:28,749 !! 2025-09-08T22:52:28,749 check.warn(importable) 2025-09-08T22:52:28,749 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,749 !! 2025-09-08T22:52:28,749 ******************************************************************************** 2025-09-08T22:52:28,749 ############################ 2025-09-08T22:52:28,749 # Package would be ignored # 2025-09-08T22:52:28,749 ############################ 2025-09-08T22:52:28,749 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-08T22:52:28,749 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,750 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,750 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-08T22:52:28,750 to the `packages` configuration field. 2025-09-08T22:52:28,750 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,750 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,750 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,751 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-08T22:52:28,751 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-08T22:52:28,751 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,751 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,751 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,752 even if it does not contain any `.py` files. 2025-09-08T22:52:28,752 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,752 directory, all directories are treated like packages. 2025-09-08T22:52:28,752 ******************************************************************************** 2025-09-08T22:52:28,752 !! 2025-09-08T22:52:28,752 check.warn(importable) 2025-09-08T22:52:28,752 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,752 !! 2025-09-08T22:52:28,752 ******************************************************************************** 2025-09-08T22:52:28,753 ############################ 2025-09-08T22:52:28,753 # Package would be ignored # 2025-09-08T22:52:28,753 ############################ 2025-09-08T22:52:28,753 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-08T22:52:28,753 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,753 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,753 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-08T22:52:28,753 to the `packages` configuration field. 2025-09-08T22:52:28,753 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,754 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,754 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,754 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-08T22:52:28,754 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-08T22:52:28,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,754 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,755 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,755 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,755 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,755 even if it does not contain any `.py` files. 2025-09-08T22:52:28,755 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,755 directory, all directories are treated like packages. 2025-09-08T22:52:28,755 ******************************************************************************** 2025-09-08T22:52:28,755 !! 2025-09-08T22:52:28,756 check.warn(importable) 2025-09-08T22:52:28,756 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,756 !! 2025-09-08T22:52:28,756 ******************************************************************************** 2025-09-08T22:52:28,756 ############################ 2025-09-08T22:52:28,756 # Package would be ignored # 2025-09-08T22:52:28,756 ############################ 2025-09-08T22:52:28,756 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-08T22:52:28,756 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,757 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,757 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-08T22:52:28,757 to the `packages` configuration field. 2025-09-08T22:52:28,757 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,757 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,757 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,758 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-08T22:52:28,758 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-08T22:52:28,758 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,758 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,758 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,758 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,759 even if it does not contain any `.py` files. 2025-09-08T22:52:28,759 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,759 directory, all directories are treated like packages. 2025-09-08T22:52:28,759 ******************************************************************************** 2025-09-08T22:52:28,759 !! 2025-09-08T22:52:28,759 check.warn(importable) 2025-09-08T22:52:28,759 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,759 !! 2025-09-08T22:52:28,759 ******************************************************************************** 2025-09-08T22:52:28,760 ############################ 2025-09-08T22:52:28,760 # Package would be ignored # 2025-09-08T22:52:28,760 ############################ 2025-09-08T22:52:28,760 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-08T22:52:28,760 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,760 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,760 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-08T22:52:28,760 to the `packages` configuration field. 2025-09-08T22:52:28,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,761 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,761 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,761 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-08T22:52:28,761 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-08T22:52:28,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,761 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,762 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,762 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,762 even if it does not contain any `.py` files. 2025-09-08T22:52:28,762 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,762 directory, all directories are treated like packages. 2025-09-08T22:52:28,762 ******************************************************************************** 2025-09-08T22:52:28,763 !! 2025-09-08T22:52:28,763 check.warn(importable) 2025-09-08T22:52:28,763 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-08T22:52:28,763 !! 2025-09-08T22:52:28,763 ******************************************************************************** 2025-09-08T22:52:28,763 ############################ 2025-09-08T22:52:28,763 # Package would be ignored # 2025-09-08T22:52:28,763 ############################ 2025-09-08T22:52:28,763 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-08T22:52:28,764 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,764 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,764 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-08T22:52:28,764 to the `packages` configuration field. 2025-09-08T22:52:28,764 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,764 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,764 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,765 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,765 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-08T22:52:28,765 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-08T22:52:28,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,765 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,765 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,766 even if it does not contain any `.py` files. 2025-09-08T22:52:28,766 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,766 directory, all directories are treated like packages. 2025-09-08T22:52:28,766 ******************************************************************************** 2025-09-08T22:52:28,766 !! 2025-09-08T22:52:28,766 check.warn(importable) 2025-09-08T22:52:28,766 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-08T22:52:28,767 !! 2025-09-08T22:52:28,767 ******************************************************************************** 2025-09-08T22:52:28,767 ############################ 2025-09-08T22:52:28,767 # Package would be ignored # 2025-09-08T22:52:28,767 ############################ 2025-09-08T22:52:28,767 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-08T22:52:28,767 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,767 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,767 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-08T22:52:28,767 to the `packages` configuration field. 2025-09-08T22:52:28,768 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,768 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,768 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,768 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,768 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-08T22:52:28,768 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-08T22:52:28,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,769 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,769 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,769 even if it does not contain any `.py` files. 2025-09-08T22:52:28,769 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,770 directory, all directories are treated like packages. 2025-09-08T22:52:28,770 ******************************************************************************** 2025-09-08T22:52:28,770 !! 2025-09-08T22:52:28,770 check.warn(importable) 2025-09-08T22:52:28,770 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-08T22:52:28,770 !! 2025-09-08T22:52:28,770 ******************************************************************************** 2025-09-08T22:52:28,770 ############################ 2025-09-08T22:52:28,770 # Package would be ignored # 2025-09-08T22:52:28,771 ############################ 2025-09-08T22:52:28,771 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-08T22:52:28,771 but it is absent from setuptools' `packages` configuration. 2025-09-08T22:52:28,771 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T22:52:28,771 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-08T22:52:28,771 to the `packages` configuration field. 2025-09-08T22:52:28,771 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T22:52:28,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T22:52:28,771 instead of `find_packages(...)`/`find:`). 2025-09-08T22:52:28,772 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T22:52:28,772 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T22:52:28,772 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-08T22:52:28,772 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-08T22:52:28,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T22:52:28,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T22:52:28,772 combination with a more fine grained `package-data` configuration. 2025-09-08T22:52:28,772 You can read more about "package data files" on setuptools documentation page: 2025-09-08T22:52:28,773 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T22:52:28,773 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T22:52:28,773 even if it does not contain any `.py` files. 2025-09-08T22:52:28,773 On the other hand, currently there is no concept of package data 2025-09-08T22:52:28,773 directory, all directories are treated like packages. 2025-09-08T22:52:28,773 ******************************************************************************** 2025-09-08T22:52:28,773 !! 2025-09-08T22:52:28,773 check.warn(importable) 2025-09-08T22:52:28,774 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T22:52:28,774 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-08T22:52:28,774 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-08T22:52:28,774 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:52:28,774 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-08T22:52:28,774 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-08T22:52:28,775 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-08T22:52:28,775 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-08T22:52:28,775 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,775 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,775 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,775 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,776 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,776 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,776 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,776 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,777 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,778 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,779 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,780 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,781 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,782 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-08T22:52:28,784 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:52:28,784 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:52:28,784 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-08T22:52:28,786 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,786 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,786 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,790 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,791 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,792 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,793 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,794 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,794 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,795 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,795 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,796 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,796 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,797 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-08T22:52:28,797 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,798 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,798 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,799 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,800 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,800 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-08T22:52:28,801 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:52:28,801 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:52:28,802 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:52:28,802 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:52:28,803 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-08T22:52:28,803 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,803 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,804 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,805 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,806 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,806 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,807 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,807 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,808 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,808 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,809 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,809 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,810 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,811 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,811 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-08T22:52:28,812 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:52:28,812 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:52:28,812 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-08T22:52:28,813 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,813 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,814 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,815 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,815 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,816 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,817 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,817 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,818 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,819 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,819 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-08T22:52:28,820 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,820 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,821 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,821 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,822 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,822 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,823 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,823 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,824 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,825 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,825 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,826 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,826 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,827 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,827 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,828 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,828 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-08T22:52:28,829 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:52:28,829 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:52:28,830 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-08T22:52:28,831 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:52:28,831 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:52:28,831 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-08T22:52:28,832 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:52:28,832 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:52:28,833 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-08T22:52:28,833 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:52:28,833 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:52:28,834 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-08T22:52:28,835 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:52:28,835 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:52:28,835 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-08T22:52:28,836 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,836 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,837 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,838 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,838 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,839 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,840 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,841 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,841 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,842 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-08T22:52:28,842 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:52:28,843 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:52:28,843 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:52:28,844 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:52:28,844 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-08T22:52:28,845 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:52:28,845 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:52:28,846 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-08T22:52:28,846 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,846 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,847 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,848 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,849 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,849 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,850 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,850 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,852 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,852 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,853 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-08T22:52:28,853 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:52:28,853 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:52:28,854 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:52:28,854 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:52:28,855 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-08T22:52:28,856 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:52:28,856 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:52:28,856 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-08T22:52:28,857 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,857 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,858 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,859 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,859 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,860 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,861 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,861 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,862 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,863 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,863 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-08T22:52:28,864 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,864 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,865 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,865 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,866 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,866 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,867 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,867 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,868 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,868 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,869 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,870 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,870 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,871 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,871 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,872 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,872 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-08T22:52:28,873 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:52:28,873 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:52:28,874 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-08T22:52:28,874 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:52:28,874 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:52:28,875 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-08T22:52:28,876 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:52:28,876 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:52:28,876 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-08T22:52:28,877 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:52:28,877 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:52:28,878 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-08T22:52:28,878 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:52:28,879 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:52:28,879 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-08T22:52:28,880 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,880 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,881 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,882 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,882 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,883 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,883 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,884 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,885 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,886 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,886 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-08T22:52:28,887 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:52:28,887 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:52:28,887 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:52:28,888 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:52:28,888 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-08T22:52:28,889 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:52:28,889 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:52:28,890 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-08T22:52:28,890 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,891 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,891 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,893 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,894 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,894 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,895 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,897 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,897 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,898 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-08T22:52:28,898 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:52:28,899 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:52:28,899 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:52:28,900 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:52:28,900 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-08T22:52:28,901 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:52:28,901 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:52:28,902 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-08T22:52:28,902 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,903 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,903 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,905 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,906 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,906 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,907 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,909 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,909 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,911 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,915 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-08T22:52:28,916 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:52:28,916 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:52:28,916 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:52:28,917 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:52:28,917 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-08T22:52:28,918 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:52:28,918 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:52:28,919 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-08T22:52:28,919 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,920 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,920 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,921 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,922 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,922 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,923 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,924 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,925 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,925 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,926 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-08T22:52:28,926 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,926 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,927 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,928 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,928 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,929 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,929 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,930 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,930 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,931 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,932 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,932 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,933 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,933 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,934 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,934 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,935 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-08T22:52:28,935 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:52:28,936 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:52:28,936 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-08T22:52:28,937 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:52:28,937 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:52:28,937 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-08T22:52:28,938 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:52:28,938 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:52:28,939 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-08T22:52:28,939 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:52:28,940 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:52:28,940 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-08T22:52:28,941 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:52:28,941 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:52:28,942 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-08T22:52:28,942 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,942 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,943 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,944 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,945 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,945 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,946 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,947 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,948 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,948 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,949 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-08T22:52:28,949 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:52:28,949 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:52:28,950 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:52:28,951 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:52:28,951 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-08T22:52:28,952 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:52:28,952 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:52:28,953 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:52:28,953 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-08T22:52:28,954 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,954 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,954 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,955 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,956 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,957 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,957 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,958 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,959 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,959 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,960 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-08T22:52:28,960 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:52:28,961 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:52:28,961 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:52:28,962 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:52:28,962 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-08T22:52:28,963 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:52:28,963 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:52:28,964 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-08T22:52:28,964 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,964 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,965 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,966 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,967 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,967 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,968 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,968 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,970 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,970 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,971 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-08T22:52:28,971 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:52:28,972 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:52:28,972 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:52:28,973 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:52:28,973 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-08T22:52:28,974 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:52:28,974 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:52:28,975 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:52:28,975 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-08T22:52:28,976 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,976 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,977 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,978 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,978 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,979 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,980 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,980 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,981 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,982 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,982 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-08T22:52:28,983 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:52:28,983 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:52:28,984 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:52:28,984 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:52:28,985 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-08T22:52:28,985 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:52:28,986 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:52:28,986 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-08T22:52:28,987 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,987 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,988 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,989 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,989 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,990 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,991 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,991 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,992 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,993 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,993 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-08T22:52:28,994 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:52:28,994 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:52:28,995 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:52:28,995 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:52:28,996 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-08T22:52:28,996 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:52:28,996 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:52:28,997 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-08T22:52:28,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:28,998 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:28,998 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:28,999 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,000 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,001 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,001 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,002 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,003 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,003 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-08T22:52:29,004 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:52:29,004 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:52:29,005 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:52:29,005 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:52:29,006 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-08T22:52:29,006 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:52:29,007 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:52:29,007 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-08T22:52:29,008 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,008 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,008 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,010 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,010 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,011 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,011 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,012 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,013 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,014 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,014 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-08T22:52:29,015 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:52:29,015 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:52:29,015 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:52:29,016 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:52:29,016 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-08T22:52:29,017 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:52:29,017 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:52:29,018 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-08T22:52:29,018 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,019 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,019 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,020 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,022 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,023 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,024 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,024 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,025 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,026 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,027 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,027 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-08T22:52:29,028 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:52:29,028 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:52:29,029 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:52:29,029 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:52:29,030 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-08T22:52:29,030 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:52:29,031 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:52:29,031 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-08T22:52:29,032 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,032 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,033 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,034 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,034 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,035 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,035 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,036 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,037 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,037 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-08T22:52:29,038 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:52:29,038 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:52:29,039 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:52:29,039 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:52:29,040 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-08T22:52:29,040 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:52:29,041 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:52:29,041 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:52:29,042 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-08T22:52:29,042 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,043 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,043 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,044 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,045 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,047 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,047 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,048 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,048 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,049 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-08T22:52:29,049 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:52:29,050 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:52:29,050 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:52:29,051 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:52:29,051 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-08T22:52:29,052 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:52:29,052 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:52:29,053 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-08T22:52:29,053 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,053 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,054 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,055 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,056 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,056 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,058 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,058 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,059 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,061 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-08T22:52:29,062 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,062 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,063 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,063 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,064 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,064 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,065 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,066 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,066 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,066 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,067 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,068 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,068 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,069 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,069 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,070 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,070 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-08T22:52:29,071 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,071 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,074 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,077 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,077 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,079 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,080 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,082 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-08T22:52:29,082 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,083 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,083 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,084 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,084 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,085 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,085 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,086 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,086 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,087 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,087 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,088 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,088 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,089 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,089 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,090 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,091 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,091 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,092 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,092 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,093 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,093 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,094 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,094 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,095 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,095 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,096 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,096 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,097 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,097 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,098 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,098 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,099 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,100 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,100 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,101 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,101 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,102 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,102 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,103 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,103 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,104 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,104 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,105 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-08T22:52:29,105 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,106 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,108 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,111 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,112 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,114 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,114 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,116 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,117 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-08T22:52:29,117 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,117 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,118 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,119 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,119 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,120 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,120 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,121 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,121 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,122 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,122 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,123 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,123 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,124 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,124 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,125 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,126 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,126 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,127 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,127 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,128 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,128 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,129 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,129 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,130 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,130 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,131 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,132 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,132 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,133 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,133 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,134 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,134 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,135 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,135 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,136 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,136 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,137 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-08T22:52:29,137 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,138 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,138 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,139 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,140 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,140 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,142 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,142 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,143 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,145 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,146 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-08T22:52:29,146 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,146 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,147 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,147 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,148 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,149 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,149 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,150 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-08T22:52:29,150 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,151 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,155 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,155 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,156 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,157 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,157 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,158 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,158 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,160 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,160 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-08T22:52:29,161 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:52:29,161 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:52:29,161 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:52:29,162 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:52:29,163 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-08T22:52:29,164 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:52:29,164 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:52:29,164 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-08T22:52:29,165 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,165 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,166 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,167 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,167 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,168 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,169 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,170 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,170 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,171 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-08T22:52:29,171 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:52:29,172 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:52:29,172 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:52:29,173 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:52:29,173 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-08T22:52:29,174 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:52:29,174 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:52:29,174 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-08T22:52:29,175 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,175 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,179 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,180 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,181 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,181 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,182 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,182 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,183 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,184 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,185 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-08T22:52:29,185 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:52:29,185 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:52:29,186 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:52:29,186 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:52:29,188 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-08T22:52:29,188 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:52:29,188 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:52:29,189 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-08T22:52:29,189 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:52:29,190 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:52:29,190 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:52:29,191 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:52:29,191 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-08T22:52:29,193 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:52:29,193 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:52:29,211 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:52:29,232 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-08T22:52:29,234 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:52:29,234 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:52:29,236 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-08T22:52:29,237 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,237 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,239 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,240 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,240 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,242 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,242 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,243 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,244 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,245 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,248 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,249 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,250 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,250 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,251 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,252 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,252 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,253 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,253 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,254 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-08T22:52:29,254 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:52:29,255 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:52:29,255 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:52:29,257 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-08T22:52:29,259 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,259 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,259 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,260 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,261 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,261 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,262 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,263 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,263 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,264 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,264 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,265 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,265 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,266 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-08T22:52:29,266 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:52:29,267 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:52:29,267 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:52:29,268 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-08T22:52:29,268 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:52:29,269 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:52:29,269 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:52:29,270 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-08T22:52:29,271 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:52:29,271 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:52:29,271 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:52:29,272 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-08T22:52:29,273 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:52:29,273 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:52:29,273 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:52:29,274 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-08T22:52:29,275 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,275 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,275 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,276 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,276 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,278 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,279 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,280 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,281 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,283 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,284 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,285 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,286 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,287 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-08T22:52:29,288 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:52:29,289 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:52:29,289 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-08T22:52:29,290 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:52:29,290 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:52:29,291 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:52:29,292 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-08T22:52:29,294 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,294 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,295 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,295 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,296 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,298 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,299 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,301 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,303 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,305 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,306 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,308 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,310 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,311 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,313 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,315 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,316 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,318 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,320 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,322 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,323 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,325 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,327 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,328 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,330 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,332 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,333 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,335 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,337 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,338 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,340 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,342 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,343 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,345 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,347 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,348 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,350 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,352 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,353 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,355 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,357 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,359 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,360 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,362 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,364 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,365 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,367 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,369 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,370 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,372 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,374 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,375 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,377 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,379 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-08T22:52:29,380 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,381 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,381 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,382 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,382 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,384 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,386 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,387 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,389 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,391 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,393 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,394 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,396 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,398 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,399 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,401 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,403 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,404 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,406 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,408 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,409 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,411 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,413 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,414 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,416 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,418 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,419 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,421 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,423 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,424 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,426 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,428 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,429 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,431 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,433 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,434 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,436 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,438 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,440 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,441 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,443 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,445 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,446 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,448 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,450 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,451 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,453 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,455 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,456 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,458 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,460 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,461 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,463 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,465 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-08T22:52:29,466 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,467 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,467 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,468 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,469 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,471 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,472 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,474 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,476 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,477 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,479 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,481 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,482 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,484 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,486 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,487 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,489 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,491 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,492 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,494 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,496 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,497 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,499 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,501 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,502 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,504 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,506 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,507 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,509 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,511 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,513 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,514 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,516 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,518 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,519 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,521 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,523 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,524 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,526 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,528 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,529 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,531 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,533 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,534 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,536 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,538 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,539 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,541 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,543 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,544 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,546 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,548 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,549 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,551 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-08T22:52:29,553 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,553 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,554 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,554 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,555 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,557 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,558 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,560 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,562 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,563 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,565 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,567 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,568 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,570 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,572 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,573 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,575 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,577 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,578 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,580 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,582 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,583 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,585 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,587 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,589 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,590 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,592 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,594 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,595 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,597 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,599 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,600 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,602 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,604 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,605 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,607 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,609 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,610 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,612 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,614 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,615 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,617 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,619 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,620 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,622 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,624 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,626 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,627 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,629 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,631 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,632 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,634 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,636 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,637 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-08T22:52:29,639 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,639 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,640 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,641 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,641 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,643 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,644 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,644 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-08T22:52:29,645 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:52:29,646 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:52:29,646 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-08T22:52:29,647 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,647 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,648 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,649 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,651 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,652 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,653 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,656 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,657 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,657 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,659 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,661 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,662 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,664 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,666 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,667 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,669 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,671 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,673 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-08T22:52:29,674 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,675 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,676 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,677 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,678 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,681 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-08T22:52:29,682 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:52:29,682 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:52:29,683 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:52:29,683 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:52:29,685 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-08T22:52:29,687 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,687 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,688 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,688 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,689 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,690 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,691 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,691 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,692 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,693 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,693 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,694 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,695 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,695 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,696 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,697 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,697 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,698 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-08T22:52:29,699 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:52:29,699 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:52:29,700 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-08T22:52:29,700 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:52:29,701 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:52:29,701 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:52:29,702 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-08T22:52:29,702 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:52:29,703 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:52:29,703 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-08T22:52:29,704 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T22:52:29,704 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-08T22:52:29,705 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T22:52:29,705 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-08T22:52:29,705 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T22:52:29,706 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-08T22:52:29,729 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:52:29,730 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:52:29,754 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-08T22:52:29,770 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T22:52:29,770 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-08T22:52:29,794 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-08T22:52:29,794 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-08T22:52:29,795 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-08T22:52:29,795 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-08T22:52:29,797 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-08T22:52:29,797 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-08T22:52:29,798 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-08T22:52:29,798 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-08T22:52:29,800 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-08T22:52:29,800 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:29,802 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:29,804 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:29,805 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:29,806 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:29,807 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:29,808 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-08T22:52:29,822 running build_ext 2025-09-08T22:52:30,184 building 'lightdock.mathutil.cython.cutil' extension 2025-09-08T22:52:30,185 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-08T22:52:30,186 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-08T22:52:30,553 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T22:52:30,554 196 | #include "longintrepr.h" 2025-09-08T22:52:30,554 | ^~~~~~~~~~~~~~~ 2025-09-08T22:52:30,554 compilation terminated. 2025-09-08T22:52:30,557 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T22:52:30,734 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T22:52:30,747 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T22:52:30,747 exec(compile('"'"''"'"''"'"' 2025-09-08T22:52:30,747 # This is -- a caller that pip uses to run setup.py 2025-09-08T22:52:30,747 # 2025-09-08T22:52:30,747 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T22:52:30,747 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T22:52:30,747 # - It provides a clear error message when setuptools is not installed. 2025-09-08T22:52:30,747 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T22:52:30,747 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T22:52:30,747 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T22:52:30,747 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T22:52:30,747 import os, sys, tokenize, traceback 2025-09-08T22:52:30,747 2025-09-08T22:52:30,747 try: 2025-09-08T22:52:30,747 import setuptools 2025-09-08T22:52:30,747 except ImportError: 2025-09-08T22:52:30,747 print( 2025-09-08T22:52:30,747 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T22:52:30,747 "the build environment with exception:", 2025-09-08T22:52:30,747 file=sys.stderr, 2025-09-08T22:52:30,747 ) 2025-09-08T22:52:30,747 traceback.print_exc() 2025-09-08T22:52:30,747 sys.exit(1) 2025-09-08T22:52:30,747 2025-09-08T22:52:30,747 __file__ = %r 2025-09-08T22:52:30,747 sys.argv[0] = __file__ 2025-09-08T22:52:30,747 2025-09-08T22:52:30,747 if os.path.exists(__file__): 2025-09-08T22:52:30,747 filename = __file__ 2025-09-08T22:52:30,747 with tokenize.open(__file__) as f: 2025-09-08T22:52:30,747 setup_py_code = f.read() 2025-09-08T22:52:30,747 else: 2025-09-08T22:52:30,747 filename = "" 2025-09-08T22:52:30,747 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T22:52:30,747 2025-09-08T22:52:30,747 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T22:52:30,747 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-l3rsfx9j[/] 2025-09-08T22:52:30,747 [bold magenta]cwd[/]: /tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/ 2025-09-08T22:52:30,747 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-08T22:52:30,748 ERROR: Failed building wheel for lightdock 2025-09-08T22:52:30,749 Running setup.py clean for lightdock 2025-09-08T22:52:30,750 Running command python setup.py clean 2025-09-08T22:52:31,274 /tmp/pip-wheel-pa7kbg3z/lightdock_5e5d8ad06a944c03b68c4a9d320a064c/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-08T22:52:31,274 !! 2025-09-08T22:52:31,274 ******************************************************************************** 2025-09-08T22:52:31,274 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-08T22:52:31,274 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T22:52:31,275 calls to avoid build errors in the future. 2025-09-08T22:52:31,275 ******************************************************************************** 2025-09-08T22:52:31,275 !! 2025-09-08T22:52:31,275 from setuptools.command.test import test as TestCommand 2025-09-08T22:52:31,626 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T22:52:31,626 !! 2025-09-08T22:52:31,627 ******************************************************************************** 2025-09-08T22:52:31,627 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T22:52:31,627 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T22:52:31,627 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T22:52:31,627 or your builds will no longer be supported. 2025-09-08T22:52:31,627 ******************************************************************************** 2025-09-08T22:52:31,627 !! 2025-09-08T22:52:31,627 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T22:52:32,478 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T22:52:32,478 !! 2025-09-08T22:52:32,478 ******************************************************************************** 2025-09-08T22:52:32,478 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T22:52:32,478 License :: Free For Educational Use 2025-09-08T22:52:32,479 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T22:52:32,479 ******************************************************************************** 2025-09-08T22:52:32,479 !! 2025-09-08T22:52:32,479 self._finalize_license_expression() 2025-09-08T22:52:32,554 running clean 2025-09-08T22:52:32,708 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T22:52:32,708 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T22:52:32,794 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T22:52:32,794 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T22:52:32,794 removing 'build' 2025-09-08T22:52:32,932 Failed to build lightdock 2025-09-08T22:52:32,933 ERROR: Failed to build one or more wheels 2025-09-08T22:52:32,933 Exception information: 2025-09-08T22:52:32,933 Traceback (most recent call last): 2025-09-08T22:52:32,933 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T22:52:32,933 status = _inner_run() 2025-09-08T22:52:32,933 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T22:52:32,933 return self.run(options, args) 2025-09-08T22:52:32,933 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T22:52:32,933 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T22:52:32,933 return func(self, options, args) 2025-09-08T22:52:32,933 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T22:52:32,933 raise CommandError("Failed to build one or more wheels") 2025-09-08T22:52:32,933 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T22:52:32,938 Removed build tracker: '/tmp/pip-build-tracker-264p6vkq'