2025-09-08T23:03:45,987 Created temporary directory: /tmp/pip-build-tracker-pewpa7xv 2025-09-08T23:03:45,988 Initialized build tracking at /tmp/pip-build-tracker-pewpa7xv 2025-09-08T23:03:45,988 Created build tracker: /tmp/pip-build-tracker-pewpa7xv 2025-09-08T23:03:45,988 Entered build tracker: /tmp/pip-build-tracker-pewpa7xv 2025-09-08T23:03:45,988 Created temporary directory: /tmp/pip-wheel-pdbidudi 2025-09-08T23:03:45,991 Created temporary directory: /tmp/pip-ephem-wheel-cache-d3qfwco2 2025-09-08T23:03:46,049 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T23:03:46,051 2 location(s) to search for versions of sella: 2025-09-08T23:03:46,051 * https://pypi.org/simple/sella/ 2025-09-08T23:03:46,051 * https://www.piwheels.org/simple/sella/ 2025-09-08T23:03:46,051 Fetching project page and analyzing links: https://pypi.org/simple/sella/ 2025-09-08T23:03:46,052 Getting page https://pypi.org/simple/sella/ 2025-09-08T23:03:46,053 Found index url https://pypi.org/simple/ 2025-09-08T23:03:46,126 Fetched page https://pypi.org/simple/sella/ as application/vnd.pypi.simple.v1+json 2025-09-08T23:03:46,145 Found link https://files.pythonhosted.org/packages/07/d7/b8cac4f2014a777cba9d7c030ce7df4fe72c52e144d7905df2e30d071f67/Sella-0.1.0.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 0.1.0 2025-09-08T23:03:46,145 Found link https://files.pythonhosted.org/packages/5f/c6/b186fd27c6eda8157bd453fc749c574420b7b3da8e425105a979a4751da8/Sella-0.1.1.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 0.1.1 2025-09-08T23:03:46,145 Found link https://files.pythonhosted.org/packages/67/22/3f973084ce70e6522920dc0b63747c8fd28b26f8b25e4882a919a201b3d6/Sella-1.0.0.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 1.0.0 2025-09-08T23:03:46,146 Found link https://files.pythonhosted.org/packages/14/d2/b1f6956ad3671d6fd2bee7309ca18bd31e40533fd88de3fdc79b236578b6/Sella-1.0.1.linux-x86_64.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 1.0.1.linux-x86_64 2025-09-08T23:03:46,146 Found link https://files.pythonhosted.org/packages/40/b2/fb171a30f83713fc2a74d17933d9b3939c46e6e4e9388d193adca295e879/Sella-1.0.2.linux-x86_64.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 1.0.2.linux-x86_64 2025-09-08T23:03:46,146 Found link https://files.pythonhosted.org/packages/30/c3/259660e33e390e0c47245c9e0fc467aaca6bb4f6820e5ea376499a77f699/Sella-1.0.3.linux-x86_64.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.5), version: 1.0.3.linux-x86_64 2025-09-08T23:03:46,147 Found link https://files.pythonhosted.org/packages/cf/d3/8ca0910b72c65b5fdef1429e593eb7b9c481f45fc172d7445a6e4c72ebb9/Sella-2.0.0.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.0.0 2025-09-08T23:03:46,147 Found link https://files.pythonhosted.org/packages/7a/58/693473370066f6ce728c2855063511b091011094d209660821399c782ed2/Sella-2.0.1.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.0.1 2025-09-08T23:03:46,147 Found link https://files.pythonhosted.org/packages/aa/7f/c33567bd66442cb313428bc245af2e16cb72f3f231372a96af6d02d41c4f/Sella-2.0.2.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.0.2 2025-09-08T23:03:46,147 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/9c/e1/3c35022704848a0bed41605d7c2bdf7e1858ffeb0e96d68444f7d2cae411/Sella-2.1.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,147 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/53/30/d4551b0b4c041ebb87872c3c77e698898edca034588c75f85e616a0f14bf/Sella-2.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/fd/9a/2113a4fd103a62c46d930cf404535a649e7ad0f1e01cbc40cc140ad2c9d5/Sella-2.1.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/e7/5a/5cc92f5576f14383f85eef8cbb70a56415b97121529aad51d9d32df54fc9/Sella-2.1.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/47/6a/8a27e4fce5a310a6fcbc7c1abe96289dbf919a8f366933a61afaea7d20ea/Sella-2.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/3c/fd/59c143bd005928397d732135203dffdebd4c461ecbd3bda3c735dd74c382/Sella-2.1.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/42/ff/af00a282fb78b1c677e07202625c0a20a9a902da5f93a8bc35bd95adc9aa/Sella-2.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/88/77/e7f19bc4e99a927e7282f18abd0ec33a9278b713dbd37dbe92b94742a767/Sella-2.1.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,148 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/16/ec/9795cf828892c4b5c686e7e91222ca85c2855968b51cf08652810ad74831/Sella-2.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,149 Found link https://files.pythonhosted.org/packages/a6/a1/682fc9f9c6149133688a25d17ee51f2fbdc128a1ac7d4fd65265fe046ea4/Sella-2.1.0.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.1.0 2025-09-08T23:03:46,149 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/56/40/0db7bc6bd12364932910b92dba4d7c9fd75a00802c27368423e31c373fa2/Sella-2.2.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,149 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/67/62/0ee75960d249df566305fe0c8cd386226f5dbe8ed25061b62a2a21a60d6e/Sella-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,149 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/87/af/545e4d5e50c8dcfdff3ffce7e3cfa347e8c39ed082b65206753e61d58142/Sella-2.2.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,149 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/76/cb/2f9196de0317d9f2cb421b251b16909f4d0f03493af1bfaa574287e000d6/Sella-2.2.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,149 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/e6/70/79682c4a8425f3c95a921ae60212f0f845cf90262cf61c832e1d00c95a55/Sella-2.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,150 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/e5/72/c155d7e2d7f96bf610cd405853a9f8a34fc7c00cb8e04453aaa48cba0602/Sella-2.2.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,150 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/3f/b6/9d21d5663ddb4cb08439f945d0e555aec15f4fcb49233a7a7f0e2640cc17/Sella-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,150 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/16/96/769ab0195f93b5c0288a52385b7f4f4b2038e7cf9479dca86c45178c9cfb/Sella-2.2.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,150 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/b2/82/48e467a0a6958342544d04e3e70cec7491032b890c9ecfe3e33e87a863d2/Sella-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,150 Found link https://files.pythonhosted.org/packages/f9/2e/43a698b318a2d91c53a83937f82c2f1f6a4a1bcd31165fb6935090545fa2/Sella-2.2.0.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.2.0 2025-09-08T23:03:46,150 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/bc/54/7279d71d8570edf8d3c30b4885afd3cf9ce26c7ecb35616739d623a2aaca/Sella-2.2.1-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/be/4a/c570d251ef2c269a209e56506ce6c8db127815660c7eb0b7021c7ba6879d/Sella-2.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/c5/1a/62e59a42d1dbe51768a42cecf342e56cf59f0b4f0b9c799df3fbd37e9be6/Sella-2.2.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/9c/ec/706108301fe6a1dc931c48ad8dbf80f43af3da21467f6aaa6f6b10eee741/Sella-2.2.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/b2/62/54a6a6979ebd5aa47ca9da1ea1905e44e2a3afcfccd5dc18618ef53bb3f8/Sella-2.2.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/78/17/763f8f41928009957b92d20de1460f74f2e38b57936d147c5db4f416a0a7/Sella-2.2.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/4e/a8/2b8ada0347e2f137ed1aa556a8053ad2977934c57960d18f98c25605aadb/Sella-2.2.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/11/6a/1f5ed9c1f14cf2a31b8dd4ec5c0d7aadadbe61b10d18ba233c44c90b875a/Sella-2.2.1-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,151 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/76/21/6f8125d2f4ed078647d289ae23e90332534169b21ac10e85606c391594b6/Sella-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,152 Found link https://files.pythonhosted.org/packages/a3/8f/c83e7b1298c6e53f73d5bc1387c159f95c75af461005f67d52247bf851df/Sella-2.2.1.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.6), version: 2.2.1 2025-09-08T23:03:46,152 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/2b/a7/1f6a64bf2f8c2deea065fff0675cb77c85407cfb33fdd2946ec31e8d1551/Sella-2.3.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,152 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/62/f0/7992a4cf79b8dd5ec3f1290e5b9ddd125497b2d77ded22273526aea4c6f7/Sella-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,152 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/6f/c7/60e91e68974416012de19079f81eac1ce34d1200f69cf27fdfade61e26d5/Sella-2.3.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,152 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/8c/b7/8b67c08599956573f68ee409718adc59ea37cd7d4d44b745a198ad0dd3fc/Sella-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,152 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/14/e1/8ad2b063fd3d34e24c8d6ad683c1ba9d62399b23994598407f906e5be3ac/Sella-2.3.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/3d/39/9dbd44ead20bf23267aead3ae47a2d0fef589586076274647c6c1fc6f1f5/Sella-2.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/c0/21/dae26094978ea8a69cd75fb6cb06a037262770e2d8a2aae7551ad6dbbf87/Sella-2.3.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/a7/df/20c673db9179b28e520faf68b9820296a4ef073aee11282e7d7ff3758c7a/Sella-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/c4/7c/f3a8c0a807badb20ed77167a7f971b16785c40d6647a914fb83e1b164bfd/Sella-2.3.0-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/b6/c5/424bcfa9c56f50eb91fdac5de3106b66bbf5359800de569bf1ee7f2ee559/Sella-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,153 Found link https://files.pythonhosted.org/packages/07/2b/0199a6a19862c2af2ee79cada1614823d6c7484a833a994f0cecfb797947/Sella-2.3.0.tar.gz (from 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link: No binaries permitted for sella: https://files.pythonhosted.org/packages/78/7b/ab368e9e97908fc9f693efc636cdc87b27a3b9cbb2599bc6b9dfbf70c0ee/Sella-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,154 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/ad/1c/ab2b31bb38bbf919a7e3c161f1f08bbdf1e287f37890c5446f727d44df7e/Sella-2.3.1-cp37-cp37m-macosx_11_0_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,154 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/d8/21/34630fc841830bfc9a8299285772ce783c07ed5b5f9daeeb14ed648e95b3/Sella-2.3.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,154 Skipping link: No binaries permitted for sella: 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https://files.pythonhosted.org/packages/cc/6b/3186e48b7a736b97990634171d42104ff05e05fd3d3cee2ca1ef60791ec8/Sella-2.3.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,163 Found link https://files.pythonhosted.org/packages/d8/8e/0c2a5279dbcce802bff2d495a76cfcf9d54792fc790b59b9f1c122ee5845/sella-2.3.4.tar.gz (from https://pypi.org/simple/sella/) (requires-python:>=3.8), version: 2.3.4 2025-09-08T23:03:46,163 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/30/4d/af1b8274231eeedac74d354469344608094cc089b3753c95036ed607af86/Sella-2.3.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,163 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/bf/8a/9f8d7a16cdea1d966c6b25b3e813a8112a1e1b84f891211743c5a390291f/Sella-2.3.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/sella/) 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https://files.pythonhosted.org/packages/bc/6a/71e51f8a208b4f9e0f54b11335d41a401d15e7b71cd166732ad479b6c531/Sella-2.3.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,165 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/e9/4a/7c387023d862f79f39ba5f19da9fbf26e90f5bce2b046b638605f0db649e/Sella-2.3.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,165 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/42/ec/820922c2edc097ed1f336311fa3c903e791036d2c285bc25ea9af8cc9977/Sella-2.3.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,165 Skipping link: No binaries permitted for sella: 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https://files.pythonhosted.org/packages/71/64/e3eda6ffedc1874b36d2996a7a82031c2c229365cff53be08940881d40f2/Sella-2.3.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,166 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/06/da/8fa30074fbac96e550d17c7d107b494eb0a4be9ac861604cf3108a9725d0/Sella-2.3.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,166 Skipping link: No binaries permitted for sella: https://files.pythonhosted.org/packages/4b/c6/97bd532ea545e1c9c5ad1e63c39cad360b62347855fc8a028ba746005fea/Sella-2.3.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,166 Found link https://files.pythonhosted.org/packages/69/ce/fd5c085bfe3674110dd445f7cd4aec39c6d69e1cda16533e69664eb56622/sella-2.3.5.tar.gz (from https://pypi.org/simple/sella/) 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Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.3.4-cp311-cp311-linux_armv6l.whl#sha256=631b60340ec817253b6b4a663080d73af47981846d1f6076633dbb4041ee0e33 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,276 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.3.4-cp311-cp311-linux_armv7l.whl#sha256=631b60340ec817253b6b4a663080d73af47981846d1f6076633dbb4041ee0e33 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,276 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=741283fa44fe0b6c5e77b91e60dc09aabe797e095a4ebf346c16e48be801a72a (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.8) 2025-09-08T23:03:46,276 Skipping link: No binaries permitted for sella: 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https://archive1.piwheels.org/simple/sella/Sella-2.3.1-cp311-cp311-linux_armv6l.whl#sha256=9fe808deefe83b0daa7df7a4c1494fe694b15c985044ec128d4265d6fde6c0f7 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,278 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.3.1-cp311-cp311-linux_armv7l.whl#sha256=9fe808deefe83b0daa7df7a4c1494fe694b15c985044ec128d4265d6fde6c0f7 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,278 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=86f1ab2071c31d40d664aaa58720bf5121c2b59a3117475e1f5ea90c8b8eb3bf (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,278 Skipping link: No binaries permitted for sella: 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https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp39-cp39-linux_armv6l.whl#sha256=0732b539c714f98b2f27afd928866f4dc238d776c65d328ea33410313eeac786 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp39-cp39-linux_armv7l.whl#sha256=0732b539c714f98b2f27afd928866f4dc238d776c65d328ea33410313eeac786 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp37-cp37m-linux_armv6l.whl#sha256=e7df60085b7900d0bc923d628a34688568c100fd51b305b421823f172f26e921 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp37-cp37m-linux_armv7l.whl#sha256=e7df60085b7900d0bc923d628a34688568c100fd51b305b421823f172f26e921 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp311-cp311-linux_armv6l.whl#sha256=637e15b5585253c5a811fdc39b5039044c2c17234ec1352c0bf9266f0db19e2e (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.1-cp311-cp311-linux_armv7l.whl#sha256=637e15b5585253c5a811fdc39b5039044c2c17234ec1352c0bf9266f0db19e2e (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=6f35c8f1e1fcd4394c4f9dd9e52a0bbf13dc6bfe51103a8fe7c5639b3d123a25 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,279 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=6f35c8f1e1fcd4394c4f9dd9e52a0bbf13dc6bfe51103a8fe7c5639b3d123a25 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=05fd2848c2660651618aca767119b7153a4ba87b67470f7193dda32356de1341 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=05fd2848c2660651618aca767119b7153a4ba87b67470f7193dda32356de1341 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=e70ffbdadbde05d811200924704fd42689dcac59217575e8572963eabfdf0ba3 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=e70ffbdadbde05d811200924704fd42689dcac59217575e8572963eabfdf0ba3 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=2a6cdff163fd246f8c66adcbc35d1c751721e0b93bfd8f0dcb6c939a00db38fa (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=2a6cdff163fd246f8c66adcbc35d1c751721e0b93bfd8f0dcb6c939a00db38fa (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,280 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=0e57154ab69534614a30b4dc8160959972d008fc7dc77d7b1c5b98539c16b887 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=0e57154ab69534614a30b4dc8160959972d008fc7dc77d7b1c5b98539c16b887 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=376ca9d3fdf56fcbcd85b61cbabe5666a96929657cb5d031e1d5e609c469ad88 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=376ca9d3fdf56fcbcd85b61cbabe5666a96929657cb5d031e1d5e609c469ad88 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=e72ef003bc4520acc3aadd11fb52be231988684fb8d5862635854d7de4fbfeb3 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=e72ef003bc4520acc3aadd11fb52be231988684fb8d5862635854d7de4fbfeb3 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=e8b4bff8358dde32d004d3531103f929a44e8eca115e61c8d93a14c5217d20dd (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,281 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=e8b4bff8358dde32d004d3531103f929a44e8eca115e61c8d93a14c5217d20dd (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=4f9794d9dc72f9d5eebeee8a6325746d55669302b5573a481e538443c3620833 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=4f9794d9dc72f9d5eebeee8a6325746d55669302b5573a481e538443c3620833 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=9775b9707c2fe60bb2673171226b1d52fe1835ad6e2a3d5aa010a83bb17a32fa (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=9775b9707c2fe60bb2673171226b1d52fe1835ad6e2a3d5aa010a83bb17a32fa (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.6) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=dd4dc24c9b2b6b140d7a11be6a8f7de23879b4c51dcce0e2b2f3d8b18fbb00e9 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=dd4dc24c9b2b6b140d7a11be6a8f7de23879b4c51dcce0e2b2f3d8b18fbb00e9 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,282 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6039dfc23f53243125121ea83fd007ec7bbcc1e5dbc83a1311eb541bc3190b2a (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6039dfc23f53243125121ea83fd007ec7bbcc1e5dbc83a1311eb541bc3190b2a (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=e42b98f37ea6d53a3ad9285788caa3663bfd212df99f13fc0d14813ec776f64f (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=e42b98f37ea6d53a3ad9285788caa3663bfd212df99f13fc0d14813ec776f64f (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=87d9bb51c354800fb255273f65578d0334ac36e70bdbc3de546e0fde24d4fa4f (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://archive1.piwheels.org/simple/sella/Sella-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=87d9bb51c354800fb255273f65578d0334ac36e70bdbc3de546e0fde24d4fa4f (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,283 Skipping link: No binaries permitted for sella: https://www.piwheels.org/simple/sella/sella-0.1.1-cp313-cp313-linux_armv6l.whl#sha256=17574ac1ba0ef84f8fc01208d041d48a39fe943a7c0285f430831ff8cb3e8170 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,284 Skipping link: No binaries permitted for sella: https://www.piwheels.org/simple/sella/sella-0.1.1-cp313-cp313-linux_armv7l.whl#sha256=17574ac1ba0ef84f8fc01208d041d48a39fe943a7c0285f430831ff8cb3e8170 (from https://www.piwheels.org/simple/sella/) (requires-python:>=3.5) 2025-09-08T23:03:46,284 Skipping link: not a file: https://www.piwheels.org/simple/sella/ 2025-09-08T23:03:46,284 Skipping link: not a file: https://pypi.org/simple/sella/ 2025-09-08T23:03:46,310 Given no hashes to check 1 links for project 'sella': discarding no candidates 2025-09-08T23:03:46,311 Collecting sella==1.0.0 2025-09-08T23:03:46,313 Created temporary directory: /tmp/pip-unpack-rqm4idt7 2025-09-08T23:03:46,546 Downloading Sella-1.0.0.tar.gz (855 kB) 2025-09-08T23:03:46,767 Added sella==1.0.0 from https://files.pythonhosted.org/packages/67/22/3f973084ce70e6522920dc0b63747c8fd28b26f8b25e4882a919a201b3d6/Sella-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-pewpa7xv' 2025-09-08T23:03:46,768 Running setup.py (path:/tmp/pip-wheel-pdbidudi/sella_f199cb37dd354c22b3880b598f4fa1c9/setup.py) egg_info for package sella 2025-09-08T23:03:46,768 Created temporary directory: /tmp/pip-pip-egg-info-p_7vuhle 2025-09-08T23:03:46,768 Preparing metadata (setup.py): started 2025-09-08T23:03:46,769 Running command python setup.py egg_info 2025-09-08T23:03:54,261 performance hint: sella/force_match.pyx:451:0: Exception check on 'update_hess' will always require the GIL to be acquired. 2025-09-08T23:03:54,261 Possible solutions: 2025-09-08T23:03:54,261 1. Declare 'update_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,261 2. Use an 'int' return type on 'update_hess' to allow an error code to be returned. 2025-09-08T23:03:54,262 performance hint: sella/force_match.pyx:476:0: Exception check on 'lj' will always require the GIL to be acquired. 2025-09-08T23:03:54,262 Possible solutions: 2025-09-08T23:03:54,262 1. Declare 'lj' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,262 2. Use an 'int' return type on 'lj' to allow an error code to be returned. 2025-09-08T23:03:54,262 performance hint: sella/force_match.pyx:506:0: Exception check on 'lj_hess' will always require the GIL to be acquired. 2025-09-08T23:03:54,262 Possible solutions: 2025-09-08T23:03:54,262 1. Declare 'lj_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,262 2. Use an 'int' return type on 'lj_hess' to allow an error code to be returned. 2025-09-08T23:03:54,262 performance hint: sella/force_match.pyx:532:0: Exception check on 'buck' will always require the GIL to be acquired. 2025-09-08T23:03:54,263 Possible solutions: 2025-09-08T23:03:54,263 1. Declare 'buck' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,263 2. Use an 'int' return type on 'buck' to allow an error code to be returned. 2025-09-08T23:03:54,263 performance hint: sella/force_match.pyx:569:0: Exception check on 'buck_hess' will always require the GIL to be acquired. 2025-09-08T23:03:54,263 Possible solutions: 2025-09-08T23:03:54,263 1. Declare 'buck_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,263 2. Use an 'int' return type on 'buck_hess' to allow an error code to be returned. 2025-09-08T23:03:54,263 performance hint: sella/force_match.pyx:597:0: Exception check on 'morse' will always require the GIL to be acquired. 2025-09-08T23:03:54,263 Possible solutions: 2025-09-08T23:03:54,264 1. Declare 'morse' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,264 2. Use an 'int' return type on 'morse' to allow an error code to be returned. 2025-09-08T23:03:54,264 performance hint: sella/force_match.pyx:637:0: Exception check on 'morse_hess' will always require the GIL to be acquired. 2025-09-08T23:03:54,264 Possible solutions: 2025-09-08T23:03:54,264 1. Declare 'morse_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,264 2. Use an 'int' return type on 'morse_hess' to allow an error code to be returned. 2025-09-08T23:03:54,264 performance hint: sella/force_match.pyx:661:0: Exception check on 'bond' will always require the GIL to be acquired. 2025-09-08T23:03:54,264 Possible solutions: 2025-09-08T23:03:54,264 1. Declare 'bond' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,265 2. Use an 'int' return type on 'bond' to allow an error code to be returned. 2025-09-08T23:03:54,265 performance hint: sella/force_match.pyx:687:0: Exception check on 'bond_hess' will always require the GIL to be acquired. 2025-09-08T23:03:54,265 Possible solutions: 2025-09-08T23:03:54,265 1. Declare 'bond_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:54,265 2. Use an 'int' return type on 'bond_hess' to allow an error code to be returned. 2025-09-08T23:03:55,810 performance hint: sella/force_match.pyx:530:15: Exception check after calling 'update_hess' will always require the GIL to be acquired. 2025-09-08T23:03:55,810 Possible solutions: 2025-09-08T23:03:55,811 1. Declare 'update_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:55,811 2. Use an 'int' return type on 'update_hess' to allow an error code to be returned. 2025-09-08T23:03:55,817 performance hint: sella/force_match.pyx:595:15: Exception check after calling 'update_hess' will always require the GIL to be acquired. 2025-09-08T23:03:55,817 Possible solutions: 2025-09-08T23:03:55,817 1. Declare 'update_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:55,817 2. Use an 'int' return type on 'update_hess' to allow an error code to be returned. 2025-09-08T23:03:55,825 performance hint: sella/force_match.pyx:659:15: Exception check after calling 'update_hess' will always require the GIL to be acquired. 2025-09-08T23:03:55,825 Possible solutions: 2025-09-08T23:03:55,825 1. Declare 'update_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:55,825 2. Use an 'int' return type on 'update_hess' to allow an error code to be returned. 2025-09-08T23:03:55,830 performance hint: sella/force_match.pyx:704:15: Exception check after calling 'update_hess' will always require the GIL to be acquired. 2025-09-08T23:03:55,830 Possible solutions: 2025-09-08T23:03:55,830 1. Declare 'update_hess' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-08T23:03:55,830 2. Use an 'int' return type on 'update_hess' to allow an error code to be returned. 2025-09-08T23:03:56,112 warning: sella/internal/int_classes.pyx:262:54: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,127 warning: sella/internal/int_classes.pyx:383:56: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,183 warning: sella/internal/int_classes.pyx:835:54: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,206 warning: sella/internal/int_classes.pyx:1021:56: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,212 warning: sella/internal/int_classes.pyx:1066:53: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,219 warning: sella/internal/int_classes.pyx:1115:47: The keyword 'nogil' should appear at the end of the function signature line. Placing it before 'except' or 'noexcept' will be disallowed in a future version of Cython. 2025-09-08T23:03:56,716 Error compiling Cython file: 2025-09-08T23:03:56,716 ------------------------------------------------------------ 2025-09-08T23:03:56,716 ... 2025-09-08T23:03:56,716 from libc.string cimport memset 2025-09-08T23:03:56,716 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,717 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,717 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,717 ^ 2025-09-08T23:03:56,717 ------------------------------------------------------------ 2025-09-08T23:03:56,717 sella/internal/int_classes.pyx:9:0: 'sella/utilities/blas.pxd' not found 2025-09-08T23:03:56,728 Error compiling Cython file: 2025-09-08T23:03:56,728 ------------------------------------------------------------ 2025-09-08T23:03:56,729 ... 2025-09-08T23:03:56,729 from libc.string cimport memset 2025-09-08T23:03:56,729 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,729 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,729 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,729 ^ 2025-09-08T23:03:56,729 ------------------------------------------------------------ 2025-09-08T23:03:56,729 sella/internal/int_classes.pyx:9:0: 'sella/utilities/blas/my_ddot.pxd' not found 2025-09-08T23:03:56,741 Error compiling Cython file: 2025-09-08T23:03:56,741 ------------------------------------------------------------ 2025-09-08T23:03:56,741 ... 2025-09-08T23:03:56,741 from libc.string cimport memset 2025-09-08T23:03:56,741 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,741 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,741 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,741 ^ 2025-09-08T23:03:56,742 ------------------------------------------------------------ 2025-09-08T23:03:56,742 sella/internal/int_classes.pyx:9:0: 'sella/utilities/blas/my_daxpy.pxd' not found 2025-09-08T23:03:56,753 Error compiling Cython file: 2025-09-08T23:03:56,753 ------------------------------------------------------------ 2025-09-08T23:03:56,753 ... 2025-09-08T23:03:56,753 from libc.string cimport memset 2025-09-08T23:03:56,753 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,754 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,754 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,754 ^ 2025-09-08T23:03:56,754 ------------------------------------------------------------ 2025-09-08T23:03:56,754 sella/internal/int_classes.pyx:9:0: 'sella/utilities/blas/my_dgemv.pxd' not found 2025-09-08T23:03:56,760 Error compiling Cython file: 2025-09-08T23:03:56,760 ------------------------------------------------------------ 2025-09-08T23:03:56,760 ... 2025-09-08T23:03:56,760 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,760 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,760 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,760 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,760 ^ 2025-09-08T23:03:56,761 ------------------------------------------------------------ 2025-09-08T23:03:56,761 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math.pxd' not found 2025-09-08T23:03:56,772 Error compiling Cython file: 2025-09-08T23:03:56,772 ------------------------------------------------------------ 2025-09-08T23:03:56,772 ... 2025-09-08T23:03:56,772 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,772 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,773 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,773 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,773 ^ 2025-09-08T23:03:56,773 ------------------------------------------------------------ 2025-09-08T23:03:56,773 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math/vec_sum.pxd' not found 2025-09-08T23:03:56,784 Error compiling Cython file: 2025-09-08T23:03:56,784 ------------------------------------------------------------ 2025-09-08T23:03:56,785 ... 2025-09-08T23:03:56,785 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,785 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,785 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,785 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,785 ^ 2025-09-08T23:03:56,785 ------------------------------------------------------------ 2025-09-08T23:03:56,786 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math/mgs.pxd' not found 2025-09-08T23:03:56,797 Error compiling Cython file: 2025-09-08T23:03:56,797 ------------------------------------------------------------ 2025-09-08T23:03:56,797 ... 2025-09-08T23:03:56,797 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,798 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,798 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,798 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,798 ^ 2025-09-08T23:03:56,798 ------------------------------------------------------------ 2025-09-08T23:03:56,798 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math/cross.pxd' not found 2025-09-08T23:03:56,809 Error compiling Cython file: 2025-09-08T23:03:56,810 ------------------------------------------------------------ 2025-09-08T23:03:56,810 ... 2025-09-08T23:03:56,810 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,810 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,810 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,810 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,810 ^ 2025-09-08T23:03:56,810 ------------------------------------------------------------ 2025-09-08T23:03:56,811 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math/normalize.pxd' not found 2025-09-08T23:03:56,822 Error compiling Cython file: 2025-09-08T23:03:56,822 ------------------------------------------------------------ 2025-09-08T23:03:56,822 ... 2025-09-08T23:03:56,822 from libc.stdint cimport uint8_t 2025-09-08T23:03:56,822 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,822 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,822 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,822 ^ 2025-09-08T23:03:56,823 ------------------------------------------------------------ 2025-09-08T23:03:56,823 sella/internal/int_classes.pyx:10:0: 'sella/utilities/math/mppi.pxd' not found 2025-09-08T23:03:56,829 Error compiling Cython file: 2025-09-08T23:03:56,829 ------------------------------------------------------------ 2025-09-08T23:03:56,830 ... 2025-09-08T23:03:56,830 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,830 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,830 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,830 normalize, mppi) 2025-09-08T23:03:56,830 from sella.internal.int_eval cimport (cart_to_bond, cart_to_angle, 2025-09-08T23:03:56,830 ^ 2025-09-08T23:03:56,830 ------------------------------------------------------------ 2025-09-08T23:03:56,831 sella/internal/int_classes.pyx:12:0: 'sella/internal/int_eval.pxd' not found 2025-09-08T23:03:56,842 Error compiling Cython file: 2025-09-08T23:03:56,843 ------------------------------------------------------------ 2025-09-08T23:03:56,843 ... 2025-09-08T23:03:56,843 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,843 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,843 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,843 normalize, mppi) 2025-09-08T23:03:56,843 from sella.internal.int_eval cimport (cart_to_bond, cart_to_angle, 2025-09-08T23:03:56,843 ^ 2025-09-08T23:03:56,843 ------------------------------------------------------------ 2025-09-08T23:03:56,844 sella/internal/int_classes.pyx:12:0: 'sella/internal/int_eval/cart_to_bond.pxd' not found 2025-09-08T23:03:56,855 Error compiling Cython file: 2025-09-08T23:03:56,855 ------------------------------------------------------------ 2025-09-08T23:03:56,855 ... 2025-09-08T23:03:56,855 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,855 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,855 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,856 normalize, mppi) 2025-09-08T23:03:56,856 from sella.internal.int_eval cimport (cart_to_bond, cart_to_angle, 2025-09-08T23:03:56,856 ^ 2025-09-08T23:03:56,856 ------------------------------------------------------------ 2025-09-08T23:03:56,856 sella/internal/int_classes.pyx:12:0: 'sella/internal/int_eval/cart_to_angle.pxd' not found 2025-09-08T23:03:56,867 Error compiling Cython file: 2025-09-08T23:03:56,867 ------------------------------------------------------------ 2025-09-08T23:03:56,867 ... 2025-09-08T23:03:56,868 from scipy.linalg.cython_blas cimport daxpy, ddot, dnrm2, dgemv, dcopy 2025-09-08T23:03:56,868 from sella.utilities.blas cimport my_ddot, my_daxpy, my_dgemv 2025-09-08T23:03:56,868 from sella.utilities.math cimport (vec_sum, mgs, cross, 2025-09-08T23:03:56,868 normalize, mppi) 2025-09-08T23:03:56,868 from sella.internal.int_eval cimport (cart_to_bond, cart_to_angle, 2025-09-08T23:03:56,868 ^ 2025-09-08T23:03:56,868 ------------------------------------------------------------ 2025-09-08T23:03:56,869 sella/internal/int_classes.pyx:12:0: 'sella/internal/int_eval/cart_to_dihedral.pxd' not found 2025-09-08T23:03:57,584 Error compiling Cython file: 2025-09-08T23:03:57,584 ------------------------------------------------------------ 2025-09-08T23:03:57,584 ... 2025-09-08T23:03:57,584 # comparison with ==. 2025-09-08T23:03:57,584 if not self.calc_required and not force: 2025-09-08T23:03:57,584 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:57,584 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:57,584 return 0 2025-09-08T23:03:57,584 self.calc_required = True 2025-09-08T23:03:57,584 ^ 2025-09-08T23:03:57,584 ------------------------------------------------------------ 2025-09-08T23:03:57,585 sella/internal/int_classes.pyx:273:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,585 Error compiling Cython file: 2025-09-08T23:03:57,585 ------------------------------------------------------------ 2025-09-08T23:03:57,585 ... 2025-09-08T23:03:57,585 if not self.calc_required and not force: 2025-09-08T23:03:57,585 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:57,585 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:57,585 return 0 2025-09-08T23:03:57,586 self.calc_required = True 2025-09-08T23:03:57,586 self.grad = grad or curv 2025-09-08T23:03:57,586 ^ 2025-09-08T23:03:57,586 ------------------------------------------------------------ 2025-09-08T23:03:57,586 sella/internal/int_classes.pyx:274:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,586 Error compiling Cython file: 2025-09-08T23:03:57,586 ------------------------------------------------------------ 2025-09-08T23:03:57,586 ... 2025-09-08T23:03:57,586 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:57,587 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:57,587 return 0 2025-09-08T23:03:57,587 self.calc_required = True 2025-09-08T23:03:57,587 self.grad = grad or curv 2025-09-08T23:03:57,587 self.curv = curv 2025-09-08T23:03:57,587 ^ 2025-09-08T23:03:57,587 ------------------------------------------------------------ 2025-09-08T23:03:57,587 sella/internal/int_classes.pyx:275:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,587 Error compiling Cython file: 2025-09-08T23:03:57,587 ------------------------------------------------------------ 2025-09-08T23:03:57,588 ... 2025-09-08T23:03:57,588 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:57,588 cdef int info, err 2025-09-08T23:03:57,588 cdef size_t sd = sizeof(double) 2025-09-08T23:03:57,588 # Zero out our arrays 2025-09-08T23:03:57,588 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:57,588 ^ 2025-09-08T23:03:57,588 ------------------------------------------------------------ 2025-09-08T23:03:57,588 sella/internal/int_classes.pyx:281:15: Cannot take address of Python object 2025-09-08T23:03:57,595 Error compiling Cython file: 2025-09-08T23:03:57,595 ------------------------------------------------------------ 2025-09-08T23:03:57,595 ... 2025-09-08T23:03:57,595 cdef int info, err 2025-09-08T23:03:57,596 cdef size_t sd = sizeof(double) 2025-09-08T23:03:57,596 # Zero out our arrays 2025-09-08T23:03:57,596 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:57,596 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:57,596 ^ 2025-09-08T23:03:57,596 ------------------------------------------------------------ 2025-09-08T23:03:57,596 sella/internal/int_classes.pyx:282:15: Cannot take address of Python object 2025-09-08T23:03:57,597 Error compiling Cython file: 2025-09-08T23:03:57,597 ------------------------------------------------------------ 2025-09-08T23:03:57,597 ... 2025-09-08T23:03:57,597 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:57,597 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:57,597 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:57,597 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:57,597 if self.nbonds > 0: 2025-09-08T23:03:57,597 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,597 ^ 2025-09-08T23:03:57,597 ------------------------------------------------------------ 2025-09-08T23:03:57,598 sella/internal/int_classes.pyx:289:19: Cannot take address of Python object 2025-09-08T23:03:57,598 Error compiling Cython file: 2025-09-08T23:03:57,598 ------------------------------------------------------------ 2025-09-08T23:03:57,598 ... 2025-09-08T23:03:57,598 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:57,598 if self.nbonds > 0: 2025-09-08T23:03:57,598 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,598 self.nbonds * 36 * sd) 2025-09-08T23:03:57,598 if self.nangles > 0: 2025-09-08T23:03:57,599 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,599 ^ 2025-09-08T23:03:57,599 ------------------------------------------------------------ 2025-09-08T23:03:57,599 sella/internal/int_classes.pyx:292:19: Cannot take address of Python object 2025-09-08T23:03:57,599 Error compiling Cython file: 2025-09-08T23:03:57,599 ------------------------------------------------------------ 2025-09-08T23:03:57,599 ... 2025-09-08T23:03:57,599 self.nbonds * 36 * sd) 2025-09-08T23:03:57,599 if self.nangles > 0: 2025-09-08T23:03:57,600 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,600 self.nangles * 81 * sd) 2025-09-08T23:03:57,600 if self.ndihedrals > 0: 2025-09-08T23:03:57,600 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,600 ^ 2025-09-08T23:03:57,600 ------------------------------------------------------------ 2025-09-08T23:03:57,600 sella/internal/int_classes.pyx:295:19: Cannot take address of Python object 2025-09-08T23:03:57,600 Error compiling Cython file: 2025-09-08T23:03:57,600 ------------------------------------------------------------ 2025-09-08T23:03:57,600 ... 2025-09-08T23:03:57,601 self.nangles * 81 * sd) 2025-09-08T23:03:57,601 if self.ndihedrals > 0: 2025-09-08T23:03:57,601 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,601 self.ndihedrals * 144 * sd) 2025-09-08T23:03:57,601 if self.nangle_sums > 0: 2025-09-08T23:03:57,601 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,601 ^ 2025-09-08T23:03:57,601 ------------------------------------------------------------ 2025-09-08T23:03:57,601 sella/internal/int_classes.pyx:298:19: Cannot take address of Python object 2025-09-08T23:03:57,602 Error compiling Cython file: 2025-09-08T23:03:57,602 ------------------------------------------------------------ 2025-09-08T23:03:57,602 ... 2025-09-08T23:03:57,602 self.ndihedrals * 144 * sd) 2025-09-08T23:03:57,602 if self.nangle_sums > 0: 2025-09-08T23:03:57,602 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,602 self.nangle_sums * 144 * sd) 2025-09-08T23:03:57,602 if self.nangle_diffs > 0: 2025-09-08T23:03:57,602 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,602 ^ 2025-09-08T23:03:57,602 ------------------------------------------------------------ 2025-09-08T23:03:57,603 sella/internal/int_classes.pyx:301:19: Cannot take address of Python object 2025-09-08T23:03:57,603 Error compiling Cython file: 2025-09-08T23:03:57,603 ------------------------------------------------------------ 2025-09-08T23:03:57,603 ... 2025-09-08T23:03:57,603 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,603 self.nangle_sums * 144 * sd) 2025-09-08T23:03:57,603 if self.nangle_diffs > 0: 2025-09-08T23:03:57,603 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,603 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:57,604 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,604 ^ 2025-09-08T23:03:57,604 ------------------------------------------------------------ 2025-09-08T23:03:57,604 sella/internal/int_classes.pyx:303:15: Cannot take address of Python object 2025-09-08T23:03:57,604 Error compiling Cython file: 2025-09-08T23:03:57,604 ------------------------------------------------------------ 2025-09-08T23:03:57,604 ... 2025-09-08T23:03:57,604 self.nangle_sums * 144 * sd) 2025-09-08T23:03:57,604 if self.nangle_diffs > 0: 2025-09-08T23:03:57,605 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,605 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:57,605 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,605 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:57,605 ^ 2025-09-08T23:03:57,605 ------------------------------------------------------------ 2025-09-08T23:03:57,605 sella/internal/int_classes.pyx:304:15: Cannot take address of Python object 2025-09-08T23:03:57,605 Error compiling Cython file: 2025-09-08T23:03:57,605 ------------------------------------------------------------ 2025-09-08T23:03:57,605 ... 2025-09-08T23:03:57,606 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:57,606 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:57,606 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,606 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:57,606 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:57,606 ^ 2025-09-08T23:03:57,606 ------------------------------------------------------------ 2025-09-08T23:03:57,606 sella/internal/int_classes.pyx:306:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,607 Error compiling Cython file: 2025-09-08T23:03:57,607 ------------------------------------------------------------ 2025-09-08T23:03:57,607 ... 2025-09-08T23:03:57,607 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,607 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:57,607 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:57,607 if dummypos is not None: 2025-09-08T23:03:57,607 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:57,607 ^ 2025-09-08T23:03:57,607 ------------------------------------------------------------ 2025-09-08T23:03:57,608 sella/internal/int_classes.pyx:308:20: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,608 Error compiling Cython file: 2025-09-08T23:03:57,608 ------------------------------------------------------------ 2025-09-08T23:03:57,608 ... 2025-09-08T23:03:57,608 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:57,608 for n in range(self.ncart): 2025-09-08T23:03:57,608 i = self.cart[n, 0] 2025-09-08T23:03:57,608 j = self.cart[n, 1] 2025-09-08T23:03:57,609 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:57,609 ^ 2025-09-08T23:03:57,609 ------------------------------------------------------------ 2025-09-08T23:03:57,609 sella/internal/int_classes.pyx:313:19: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,609 Error compiling Cython file: 2025-09-08T23:03:57,609 ------------------------------------------------------------ 2025-09-08T23:03:57,609 ... 2025-09-08T23:03:57,609 for n in range(self.ncart): 2025-09-08T23:03:57,609 i = self.cart[n, 0] 2025-09-08T23:03:57,610 j = self.cart[n, 1] 2025-09-08T23:03:57,610 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:57,610 self.dq[n, i, j] = 1. 2025-09-08T23:03:57,610 ^ 2025-09-08T23:03:57,610 ------------------------------------------------------------ 2025-09-08T23:03:57,610 sella/internal/int_classes.pyx:314:19: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,610 Error compiling Cython file: 2025-09-08T23:03:57,610 ------------------------------------------------------------ 2025-09-08T23:03:57,610 ... 2025-09-08T23:03:57,611 m = self.ncart 2025-09-08T23:03:57,611 for n in range(self.nbonds): 2025-09-08T23:03:57,611 i = self.bonds[n, 0] 2025-09-08T23:03:57,611 j = self.bonds[n, 1] 2025-09-08T23:03:57,611 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,611 ^ 2025-09-08T23:03:57,611 ------------------------------------------------------------ 2025-09-08T23:03:57,611 sella/internal/int_classes.pyx:321:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,611 Error compiling Cython file: 2025-09-08T23:03:57,612 ------------------------------------------------------------ 2025-09-08T23:03:57,612 ... 2025-09-08T23:03:57,612 for n in range(self.nbonds): 2025-09-08T23:03:57,612 i = self.bonds[n, 0] 2025-09-08T23:03:57,612 j = self.bonds[n, 1] 2025-09-08T23:03:57,612 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,612 if err != 0: return err 2025-09-08T23:03:57,612 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:57,612 ^ 2025-09-08T23:03:57,612 ------------------------------------------------------------ 2025-09-08T23:03:57,613 sella/internal/int_classes.pyx:323:19: 'cart_to_bond' is not a constant, variable or function identifier 2025-09-08T23:03:57,613 Error compiling Cython file: 2025-09-08T23:03:57,613 ------------------------------------------------------------ 2025-09-08T23:03:57,613 ... 2025-09-08T23:03:57,613 for n in range(self.nbonds): 2025-09-08T23:03:57,613 i = self.bonds[n, 0] 2025-09-08T23:03:57,613 j = self.bonds[n, 1] 2025-09-08T23:03:57,613 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,613 if err != 0: return err 2025-09-08T23:03:57,613 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:57,614 ^ 2025-09-08T23:03:57,614 ------------------------------------------------------------ 2025-09-08T23:03:57,614 sella/internal/int_classes.pyx:323:48: Cannot take address of Python object 2025-09-08T23:03:57,614 Error compiling Cython file: 2025-09-08T23:03:57,614 ------------------------------------------------------------ 2025-09-08T23:03:57,614 ... 2025-09-08T23:03:57,614 m += self.nbonds 2025-09-08T23:03:57,614 for n in range(self.nangles): 2025-09-08T23:03:57,614 i = self.angles[n, 0] 2025-09-08T23:03:57,615 j = self.angles[n, 1] 2025-09-08T23:03:57,615 k = self.angles[n, 2] 2025-09-08T23:03:57,615 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,615 ^ 2025-09-08T23:03:57,615 ------------------------------------------------------------ 2025-09-08T23:03:57,615 sella/internal/int_classes.pyx:332:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,615 Error compiling Cython file: 2025-09-08T23:03:57,615 ------------------------------------------------------------ 2025-09-08T23:03:57,615 ... 2025-09-08T23:03:57,615 i = self.angles[n, 0] 2025-09-08T23:03:57,616 j = self.angles[n, 1] 2025-09-08T23:03:57,616 k = self.angles[n, 2] 2025-09-08T23:03:57,616 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,616 if err != 0: return err 2025-09-08T23:03:57,616 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,616 ^ 2025-09-08T23:03:57,616 ------------------------------------------------------------ 2025-09-08T23:03:57,616 sella/internal/int_classes.pyx:334:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,616 Error compiling Cython file: 2025-09-08T23:03:57,617 ------------------------------------------------------------ 2025-09-08T23:03:57,617 ... 2025-09-08T23:03:57,617 k = self.angles[n, 2] 2025-09-08T23:03:57,617 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,617 if err != 0: return err 2025-09-08T23:03:57,617 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,617 if err != 0: return err 2025-09-08T23:03:57,617 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:57,617 ^ 2025-09-08T23:03:57,617 ------------------------------------------------------------ 2025-09-08T23:03:57,618 sella/internal/int_classes.pyx:336:19: 'cart_to_angle' is not a constant, variable or function identifier 2025-09-08T23:03:57,618 Error compiling Cython file: 2025-09-08T23:03:57,618 ------------------------------------------------------------ 2025-09-08T23:03:57,618 ... 2025-09-08T23:03:57,618 k = self.angles[n, 2] 2025-09-08T23:03:57,618 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,618 if err != 0: return err 2025-09-08T23:03:57,618 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,618 if err != 0: return err 2025-09-08T23:03:57,618 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:57,618 ^ 2025-09-08T23:03:57,619 ------------------------------------------------------------ 2025-09-08T23:03:57,619 sella/internal/int_classes.pyx:336:62: Cannot take address of Python object 2025-09-08T23:03:57,619 Error compiling Cython file: 2025-09-08T23:03:57,619 ------------------------------------------------------------ 2025-09-08T23:03:57,619 ... 2025-09-08T23:03:57,619 for n in range(self.ndihedrals): 2025-09-08T23:03:57,619 i = self.dihedrals[n, 0] 2025-09-08T23:03:57,619 j = self.dihedrals[n, 1] 2025-09-08T23:03:57,619 k = self.dihedrals[n, 2] 2025-09-08T23:03:57,620 l = self.dihedrals[n, 3] 2025-09-08T23:03:57,620 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:57,620 ^ 2025-09-08T23:03:57,620 ------------------------------------------------------------ 2025-09-08T23:03:57,620 sella/internal/int_classes.pyx:347:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,620 Error compiling Cython file: 2025-09-08T23:03:57,620 ------------------------------------------------------------ 2025-09-08T23:03:57,620 ... 2025-09-08T23:03:57,620 j = self.dihedrals[n, 1] 2025-09-08T23:03:57,620 k = self.dihedrals[n, 2] 2025-09-08T23:03:57,621 l = self.dihedrals[n, 3] 2025-09-08T23:03:57,621 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:57,621 if err != 0: return err 2025-09-08T23:03:57,621 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,621 ^ 2025-09-08T23:03:57,621 ------------------------------------------------------------ 2025-09-08T23:03:57,621 sella/internal/int_classes.pyx:349:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,621 Error compiling Cython file: 2025-09-08T23:03:57,621 ------------------------------------------------------------ 2025-09-08T23:03:57,622 ... 2025-09-08T23:03:57,622 l = self.dihedrals[n, 3] 2025-09-08T23:03:57,622 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:57,622 if err != 0: return err 2025-09-08T23:03:57,622 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,622 if err != 0: return err 2025-09-08T23:03:57,622 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,622 ^ 2025-09-08T23:03:57,622 ------------------------------------------------------------ 2025-09-08T23:03:57,622 sella/internal/int_classes.pyx:351:18: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,623 Error compiling Cython file: 2025-09-08T23:03:57,623 ------------------------------------------------------------ 2025-09-08T23:03:57,623 ... 2025-09-08T23:03:57,623 if err != 0: return err 2025-09-08T23:03:57,623 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,623 if err != 0: return err 2025-09-08T23:03:57,623 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,623 if err != 0: return err 2025-09-08T23:03:57,623 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:57,623 ^ 2025-09-08T23:03:57,623 ------------------------------------------------------------ 2025-09-08T23:03:57,624 sella/internal/int_classes.pyx:353:19: 'cart_to_dihedral' is not a constant, variable or function identifier 2025-09-08T23:03:57,624 Error compiling Cython file: 2025-09-08T23:03:57,624 ------------------------------------------------------------ 2025-09-08T23:03:57,624 ... 2025-09-08T23:03:57,624 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,624 if err != 0: return err 2025-09-08T23:03:57,624 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,624 if err != 0: return err 2025-09-08T23:03:57,624 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:57,624 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:57,625 ^ 2025-09-08T23:03:57,625 ------------------------------------------------------------ 2025-09-08T23:03:57,625 sella/internal/int_classes.pyx:354:36: Cannot take address of Python object 2025-09-08T23:03:57,625 Error compiling Cython file: 2025-09-08T23:03:57,625 ------------------------------------------------------------ 2025-09-08T23:03:57,625 ... 2025-09-08T23:03:57,625 return info 2025-09-08T23:03:57,625 m += self.ndihedrals 2025-09-08T23:03:57,625 for n in range(self.nangle_sums): 2025-09-08T23:03:57,626 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:57,626 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:57,626 ^ 2025-09-08T23:03:57,626 ------------------------------------------------------------ 2025-09-08T23:03:57,626 sella/internal/int_classes.pyx:363:40: Cannot take address of Python object 2025-09-08T23:03:57,626 Error compiling Cython file: 2025-09-08T23:03:57,626 ------------------------------------------------------------ 2025-09-08T23:03:57,626 ... 2025-09-08T23:03:57,626 return info 2025-09-08T23:03:57,627 m += self.nangle_sums 2025-09-08T23:03:57,627 for n in range(self.nangle_diffs): 2025-09-08T23:03:57,627 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:57,627 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:57,627 ^ 2025-09-08T23:03:57,627 ------------------------------------------------------------ 2025-09-08T23:03:57,627 sella/internal/int_classes.pyx:371:40: Cannot take address of Python object 2025-09-08T23:03:57,627 Error compiling Cython file: 2025-09-08T23:03:57,627 ------------------------------------------------------------ 2025-09-08T23:03:57,627 ... 2025-09-08T23:03:57,628 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:57,628 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:57,628 if info < 0: 2025-09-08T23:03:57,628 return info 2025-09-08T23:03:57,628 self.calc_required = False 2025-09-08T23:03:57,628 ^ 2025-09-08T23:03:57,628 ------------------------------------------------------------ 2025-09-08T23:03:57,628 sella/internal/int_classes.pyx:376:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,629 Error compiling Cython file: 2025-09-08T23:03:57,629 ------------------------------------------------------------ 2025-09-08T23:03:57,629 ... 2025-09-08T23:03:57,629 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:57,629 if info < 0: 2025-09-08T23:03:57,629 return info 2025-09-08T23:03:57,629 self.calc_required = False 2025-09-08T23:03:57,629 self.nint = -1 2025-09-08T23:03:57,629 ^ 2025-09-08T23:03:57,629 ------------------------------------------------------------ 2025-09-08T23:03:57,630 sella/internal/int_classes.pyx:377:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,630 Error compiling Cython file: 2025-09-08T23:03:57,630 ------------------------------------------------------------ 2025-09-08T23:03:57,630 ... 2025-09-08T23:03:57,630 if self.nint > 0: 2025-09-08T23:03:57,630 return 0 2025-09-08T23:03:57,630 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:57,630 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:57,630 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:57,631 ^ 2025-09-08T23:03:57,631 ------------------------------------------------------------ 2025-09-08T23:03:57,631 sella/internal/int_classes.pyx:393:15: Cannot take address of Python object 2025-09-08T23:03:57,631 Error compiling Cython file: 2025-09-08T23:03:57,631 ------------------------------------------------------------ 2025-09-08T23:03:57,631 ... 2025-09-08T23:03:57,631 return 0 2025-09-08T23:03:57,631 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:57,632 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:57,632 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:57,632 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:57,632 ^ 2025-09-08T23:03:57,632 ------------------------------------------------------------ 2025-09-08T23:03:57,632 sella/internal/int_classes.pyx:394:15: Cannot take address of Python object 2025-09-08T23:03:57,638 Error compiling Cython file: 2025-09-08T23:03:57,638 ------------------------------------------------------------ 2025-09-08T23:03:57,638 ... 2025-09-08T23:03:57,638 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:57,639 cdef int i 2025-09-08T23:03:57,639 if self.nq == 0: 2025-09-08T23:03:57,639 for i in range(self.nx): 2025-09-08T23:03:57,639 self.Uext[i, i] = 1. 2025-09-08T23:03:57,639 ^ 2025-09-08T23:03:57,639 ------------------------------------------------------------ 2025-09-08T23:03:57,639 sella/internal/int_classes.pyx:399:25: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,639 Error compiling Cython file: 2025-09-08T23:03:57,640 ------------------------------------------------------------ 2025-09-08T23:03:57,640 ... 2025-09-08T23:03:57,640 cdef int i 2025-09-08T23:03:57,640 if self.nq == 0: 2025-09-08T23:03:57,640 for i in range(self.nx): 2025-09-08T23:03:57,640 self.Uext[i, i] = 1. 2025-09-08T23:03:57,640 self.nint = 0 2025-09-08T23:03:57,640 ^ 2025-09-08T23:03:57,640 ------------------------------------------------------------ 2025-09-08T23:03:57,641 sella/internal/int_classes.pyx:400:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,641 Error compiling Cython file: 2025-09-08T23:03:57,641 ------------------------------------------------------------ 2025-09-08T23:03:57,641 ... 2025-09-08T23:03:57,641 cdef int i 2025-09-08T23:03:57,641 if self.nq == 0: 2025-09-08T23:03:57,641 for i in range(self.nx): 2025-09-08T23:03:57,641 self.Uext[i, i] = 1. 2025-09-08T23:03:57,641 self.nint = 0 2025-09-08T23:03:57,641 self.next = self.nx 2025-09-08T23:03:57,641 ^ 2025-09-08T23:03:57,642 ------------------------------------------------------------ 2025-09-08T23:03:57,642 sella/internal/int_classes.pyx:401:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,642 Error compiling Cython file: 2025-09-08T23:03:57,642 ------------------------------------------------------------ 2025-09-08T23:03:57,642 ... 2025-09-08T23:03:57,642 self.nint = 0 2025-09-08T23:03:57,642 self.next = self.nx 2025-09-08T23:03:57,642 return 0 2025-09-08T23:03:57,643 for n in range(self.nq): 2025-09-08T23:03:57,643 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:57,643 ^ 2025-09-08T23:03:57,643 ------------------------------------------------------------ 2025-09-08T23:03:57,643 sella/internal/int_classes.pyx:405:18: Cannot take address of Python object attribute 'nx' 2025-09-08T23:03:57,643 Error compiling Cython file: 2025-09-08T23:03:57,643 ------------------------------------------------------------ 2025-09-08T23:03:57,643 ... 2025-09-08T23:03:57,643 self.nint = 0 2025-09-08T23:03:57,644 self.next = self.nx 2025-09-08T23:03:57,644 return 0 2025-09-08T23:03:57,644 for n in range(self.nq): 2025-09-08T23:03:57,644 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:57,644 ^ 2025-09-08T23:03:57,644 ------------------------------------------------------------ 2025-09-08T23:03:57,644 sella/internal/int_classes.pyx:405:28: Cannot take address of Python object 2025-09-08T23:03:57,644 Error compiling Cython file: 2025-09-08T23:03:57,645 ------------------------------------------------------------ 2025-09-08T23:03:57,645 ... 2025-09-08T23:03:57,645 self.nint = 0 2025-09-08T23:03:57,645 self.next = self.nx 2025-09-08T23:03:57,645 return 0 2025-09-08T23:03:57,645 for n in range(self.nq): 2025-09-08T23:03:57,645 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:57,645 ^ 2025-09-08T23:03:57,645 ------------------------------------------------------------ 2025-09-08T23:03:57,646 sella/internal/int_classes.pyx:405:54: Cannot take address of Python object 2025-09-08T23:03:57,646 Error compiling Cython file: 2025-09-08T23:03:57,646 ------------------------------------------------------------ 2025-09-08T23:03:57,646 ... 2025-09-08T23:03:57,646 return 0 2025-09-08T23:03:57,646 for n in range(self.nq): 2025-09-08T23:03:57,646 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:57,646 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:57,646 ^ 2025-09-08T23:03:57,647 ------------------------------------------------------------ 2025-09-08T23:03:57,647 sella/internal/int_classes.pyx:407:20: 'mppi' is not a constant, variable or function identifier 2025-09-08T23:03:57,647 Error compiling Cython file: 2025-09-08T23:03:57,647 ------------------------------------------------------------ 2025-09-08T23:03:57,647 ... 2025-09-08T23:03:57,647 return 0 2025-09-08T23:03:57,647 for n in range(self.nq): 2025-09-08T23:03:57,647 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:57,648 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:57,648 ^ 2025-09-08T23:03:57,648 ------------------------------------------------------------ 2025-09-08T23:03:57,648 sella/internal/int_classes.pyx:407:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,648 Error compiling Cython file: 2025-09-08T23:03:57,648 ------------------------------------------------------------ 2025-09-08T23:03:57,648 ... 2025-09-08T23:03:57,648 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:57,649 self.sing, self.Binv, self.work3) 2025-09-08T23:03:57,649 if self.nint < 0: 2025-09-08T23:03:57,649 return self.nint 2025-09-08T23:03:57,649 self.next = self.nx - self.nint 2025-09-08T23:03:57,649 ^ 2025-09-08T23:03:57,649 ------------------------------------------------------------ 2025-09-08T23:03:57,649 sella/internal/int_classes.pyx:412:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,649 Error compiling Cython file: 2025-09-08T23:03:57,649 ------------------------------------------------------------ 2025-09-08T23:03:57,650 ... 2025-09-08T23:03:57,650 if self.nint < 0: 2025-09-08T23:03:57,650 return self.nint 2025-09-08T23:03:57,650 self.next = self.nx - self.nint 2025-09-08T23:03:57,650 self.calc_required = False 2025-09-08T23:03:57,650 ^ 2025-09-08T23:03:57,650 ------------------------------------------------------------ 2025-09-08T23:03:57,650 sella/internal/int_classes.pyx:414:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,651 Error compiling Cython file: 2025-09-08T23:03:57,651 ------------------------------------------------------------ 2025-09-08T23:03:57,651 ... 2025-09-08T23:03:57,651 bint grad, 2025-09-08T23:03:57,651 bint curv) nogil: 2025-09-08T23:03:57,651 cdef int err 2025-09-08T23:03:57,651 cdef size_t i, j, k, l, m 2025-09-08T23:03:57,651 cdef size_t sd = sizeof(double) 2025-09-08T23:03:57,651 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,651 ^ 2025-09-08T23:03:57,651 ------------------------------------------------------------ 2025-09-08T23:03:57,652 sella/internal/int_classes.pyx:429:15: Cannot take address of Python object 2025-09-08T23:03:57,652 Error compiling Cython file: 2025-09-08T23:03:57,652 ------------------------------------------------------------ 2025-09-08T23:03:57,652 ... 2025-09-08T23:03:57,652 bint curv) nogil: 2025-09-08T23:03:57,652 cdef int err 2025-09-08T23:03:57,652 cdef size_t i, j, k, l, m 2025-09-08T23:03:57,652 cdef size_t sd = sizeof(double) 2025-09-08T23:03:57,652 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:57,653 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:57,653 ^ 2025-09-08T23:03:57,653 ------------------------------------------------------------ 2025-09-08T23:03:57,653 sella/internal/int_classes.pyx:430:15: Cannot take address of Python object 2025-09-08T23:03:57,653 Error compiling Cython file: 2025-09-08T23:03:57,653 ------------------------------------------------------------ 2025-09-08T23:03:57,653 ... 2025-09-08T23:03:57,653 j = indices[1] 2025-09-08T23:03:57,653 k = indices[2] 2025-09-08T23:03:57,654 l = indices[3] 2025-09-08T23:03:57,654 # First part of the angle sum/diff 2025-09-08T23:03:57,654 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,654 ^ 2025-09-08T23:03:57,654 ------------------------------------------------------------ 2025-09-08T23:03:57,654 sella/internal/int_classes.pyx:437:14: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,654 Error compiling Cython file: 2025-09-08T23:03:57,654 ------------------------------------------------------------ 2025-09-08T23:03:57,654 ... 2025-09-08T23:03:57,655 l = indices[3] 2025-09-08T23:03:57,655 # First part of the angle sum/diff 2025-09-08T23:03:57,655 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,655 if err != 0: return err 2025-09-08T23:03:57,655 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,655 ^ 2025-09-08T23:03:57,655 ------------------------------------------------------------ 2025-09-08T23:03:57,655 sella/internal/int_classes.pyx:439:14: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,655 Error compiling Cython file: 2025-09-08T23:03:57,656 ------------------------------------------------------------ 2025-09-08T23:03:57,656 ... 2025-09-08T23:03:57,656 # First part of the angle sum/diff 2025-09-08T23:03:57,656 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,656 if err != 0: return err 2025-09-08T23:03:57,656 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,656 if err != 0: return err 2025-09-08T23:03:57,656 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,656 ^ 2025-09-08T23:03:57,656 ------------------------------------------------------------ 2025-09-08T23:03:57,656 sella/internal/int_classes.pyx:441:15: 'cart_to_angle' is not a constant, variable or function identifier 2025-09-08T23:03:57,657 Error compiling Cython file: 2025-09-08T23:03:57,657 ------------------------------------------------------------ 2025-09-08T23:03:57,657 ... 2025-09-08T23:03:57,657 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,657 if err != 0: return err 2025-09-08T23:03:57,657 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,657 if err != 0: return err 2025-09-08T23:03:57,657 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,657 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:57,657 ^ 2025-09-08T23:03:57,657 ------------------------------------------------------------ 2025-09-08T23:03:57,658 sella/internal/int_classes.pyx:442:29: Cannot convert 'double *' to Python object 2025-09-08T23:03:57,658 Error compiling Cython file: 2025-09-08T23:03:57,658 ------------------------------------------------------------ 2025-09-08T23:03:57,658 ... 2025-09-08T23:03:57,658 # First part of the angle sum/diff 2025-09-08T23:03:57,658 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:57,658 if err != 0: return err 2025-09-08T23:03:57,658 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:57,658 if err != 0: return err 2025-09-08T23:03:57,658 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,659 ^ 2025-09-08T23:03:57,659 ------------------------------------------------------------ 2025-09-08T23:03:57,659 sella/internal/int_classes.pyx:441:8: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,659 Error compiling Cython file: 2025-09-08T23:03:57,659 ------------------------------------------------------------ 2025-09-08T23:03:57,659 ... 2025-09-08T23:03:57,659 if err != 0: return err 2025-09-08T23:03:57,659 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,659 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:57,659 grad, curv) 2025-09-08T23:03:57,660 # Second part 2025-09-08T23:03:57,660 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:57,660 ^ 2025-09-08T23:03:57,660 ------------------------------------------------------------ 2025-09-08T23:03:57,660 sella/internal/int_classes.pyx:445:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,660 Error compiling Cython file: 2025-09-08T23:03:57,660 ------------------------------------------------------------ 2025-09-08T23:03:57,660 ... 2025-09-08T23:03:57,660 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,661 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:57,661 grad, curv) 2025-09-08T23:03:57,661 # Second part 2025-09-08T23:03:57,661 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:57,661 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:57,661 ^ 2025-09-08T23:03:57,661 ------------------------------------------------------------ 2025-09-08T23:03:57,661 sella/internal/int_classes.pyx:446:32: Cannot take address of Python object 2025-09-08T23:03:57,661 Error compiling Cython file: 2025-09-08T23:03:57,661 ------------------------------------------------------------ 2025-09-08T23:03:57,662 ... 2025-09-08T23:03:57,662 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,662 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:57,662 grad, curv) 2025-09-08T23:03:57,662 # Second part 2025-09-08T23:03:57,662 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:57,662 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:57,662 ^ 2025-09-08T23:03:57,662 ------------------------------------------------------------ 2025-09-08T23:03:57,662 sella/internal/int_classes.pyx:446:57: Cannot take address of Python object 2025-09-08T23:03:57,663 Error compiling Cython file: 2025-09-08T23:03:57,663 ------------------------------------------------------------ 2025-09-08T23:03:57,663 ... 2025-09-08T23:03:57,663 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:57,663 grad, curv) 2025-09-08T23:03:57,663 # Second part 2025-09-08T23:03:57,663 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:57,663 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:57,663 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,663 ^ 2025-09-08T23:03:57,664 ------------------------------------------------------------ 2025-09-08T23:03:57,664 sella/internal/int_classes.pyx:447:14: 'cart_to_angle' is not a constant, variable or function identifier 2025-09-08T23:03:57,664 Error compiling Cython file: 2025-09-08T23:03:57,664 ------------------------------------------------------------ 2025-09-08T23:03:57,664 ... 2025-09-08T23:03:57,664 grad, curv) 2025-09-08T23:03:57,664 # Second part 2025-09-08T23:03:57,664 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:57,664 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:57,664 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:57,665 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:57,665 ^ 2025-09-08T23:03:57,665 ------------------------------------------------------------ 2025-09-08T23:03:57,665 sella/internal/int_classes.pyx:448:28: Cannot take address of Python object 2025-09-08T23:03:57,665 Error compiling Cython file: 2025-09-08T23:03:57,665 ------------------------------------------------------------ 2025-09-08T23:03:57,665 ... 2025-09-08T23:03:57,665 if err != 0: return err 2025-09-08T23:03:57,666 # Combine results 2025-09-08T23:03:57,666 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:57,666 if grad or curv: 2025-09-08T23:03:57,666 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:57,666 ^ 2025-09-08T23:03:57,666 ------------------------------------------------------------ 2025-09-08T23:03:57,666 sella/internal/int_classes.pyx:456:18: Cannot take address of Python object attribute 'nx' 2025-09-08T23:03:57,666 Error compiling Cython file: 2025-09-08T23:03:57,666 ------------------------------------------------------------ 2025-09-08T23:03:57,666 ... 2025-09-08T23:03:57,667 if err != 0: return err 2025-09-08T23:03:57,667 # Combine results 2025-09-08T23:03:57,667 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:57,667 if grad or curv: 2025-09-08T23:03:57,667 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:57,667 ^ 2025-09-08T23:03:57,667 ------------------------------------------------------------ 2025-09-08T23:03:57,667 sella/internal/int_classes.pyx:456:35: Cannot take address of Python object 2025-09-08T23:03:57,667 Error compiling Cython file: 2025-09-08T23:03:57,668 ------------------------------------------------------------ 2025-09-08T23:03:57,668 ... 2025-09-08T23:03:57,668 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:57,668 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:57,668 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:57,668 for i in range(3): 2025-09-08T23:03:57,668 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:57,668 ^ 2025-09-08T23:03:57,668 ------------------------------------------------------------ 2025-09-08T23:03:57,668 sella/internal/int_classes.pyx:474:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,669 Error compiling Cython file: 2025-09-08T23:03:57,669 ------------------------------------------------------------ 2025-09-08T23:03:57,669 ... 2025-09-08T23:03:57,669 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:57,669 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:57,669 for i in range(3): 2025-09-08T23:03:57,669 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:57,669 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:57,669 ^ 2025-09-08T23:03:57,669 ------------------------------------------------------------ 2025-09-08T23:03:57,670 sella/internal/int_classes.pyx:475:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,670 Error compiling Cython file: 2025-09-08T23:03:57,670 ------------------------------------------------------------ 2025-09-08T23:03:57,670 ... 2025-09-08T23:03:57,670 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:57,670 for i in range(3): 2025-09-08T23:03:57,670 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:57,670 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:57,670 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:57,671 ^ 2025-09-08T23:03:57,671 ------------------------------------------------------------ 2025-09-08T23:03:57,671 sella/internal/int_classes.pyx:476:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,671 Error compiling Cython file: 2025-09-08T23:03:57,671 ------------------------------------------------------------ 2025-09-08T23:03:57,671 ... 2025-09-08T23:03:57,671 for i in range(3): 2025-09-08T23:03:57,671 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:57,671 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:57,671 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:57,672 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:57,672 ^ 2025-09-08T23:03:57,672 ------------------------------------------------------------ 2025-09-08T23:03:57,672 sella/internal/int_classes.pyx:478:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,672 Error compiling Cython file: 2025-09-08T23:03:57,672 ------------------------------------------------------------ 2025-09-08T23:03:57,672 ... 2025-09-08T23:03:57,673 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:57,673 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:57,673 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:57,673 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:57,673 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:57,673 ^ 2025-09-08T23:03:57,673 ------------------------------------------------------------ 2025-09-08T23:03:57,673 sella/internal/int_classes.pyx:479:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,673 Error compiling Cython file: 2025-09-08T23:03:57,674 ------------------------------------------------------------ 2025-09-08T23:03:57,674 ... 2025-09-08T23:03:57,674 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:57,674 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:57,674 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:57,674 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:57,674 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:57,674 ^ 2025-09-08T23:03:57,674 ------------------------------------------------------------ 2025-09-08T23:03:57,674 sella/internal/int_classes.pyx:480:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,675 Error compiling Cython file: 2025-09-08T23:03:57,675 ------------------------------------------------------------ 2025-09-08T23:03:57,675 ... 2025-09-08T23:03:57,675 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:57,675 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:57,675 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:57,675 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:57,675 ^ 2025-09-08T23:03:57,675 ------------------------------------------------------------ 2025-09-08T23:03:57,676 sella/internal/int_classes.pyx:482:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,676 Error compiling Cython file: 2025-09-08T23:03:57,676 ------------------------------------------------------------ 2025-09-08T23:03:57,676 ... 2025-09-08T23:03:57,676 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:57,676 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:57,676 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:57,676 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:57,676 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:57,677 ^ 2025-09-08T23:03:57,677 ------------------------------------------------------------ 2025-09-08T23:03:57,677 sella/internal/int_classes.pyx:483:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,677 Error compiling Cython file: 2025-09-08T23:03:57,677 ------------------------------------------------------------ 2025-09-08T23:03:57,677 ... 2025-09-08T23:03:57,677 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:57,677 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:57,678 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:57,678 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:57,678 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:57,678 ^ 2025-09-08T23:03:57,678 ------------------------------------------------------------ 2025-09-08T23:03:57,678 sella/internal/int_classes.pyx:484:12: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,678 performance hint: sella/internal/int_classes.pyx:523:33: Index should be typed for more efficient access 2025-09-08T23:03:57,678 performance hint: sella/internal/int_classes.pyx:524:33: Index should be typed for more efficient access 2025-09-08T23:03:57,684 performance hint: sella/internal/int_classes.pyx:529:37: Index should be typed for more efficient access 2025-09-08T23:03:57,719 Error compiling Cython file: 2025-09-08T23:03:57,720 ------------------------------------------------------------ 2025-09-08T23:03:57,720 ... 2025-09-08T23:03:57,720 for j in range(i + 1, self.nreal): 2025-09-08T23:03:57,720 if self.bmat[i, j]: 2025-09-08T23:03:57,720 factr = 0.5 2025-09-08T23:03:57,720 else: 2025-09-08T23:03:57,720 factr = 1.25 2025-09-08T23:03:57,720 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:57,720 ^ 2025-09-08T23:03:57,720 ------------------------------------------------------------ 2025-09-08T23:03:57,721 sella/internal/int_classes.pyx:701:31: 'vec_sum' is not a constant, variable or function identifier 2025-09-08T23:03:57,728 Error compiling Cython file: 2025-09-08T23:03:57,728 ------------------------------------------------------------ 2025-09-08T23:03:57,728 ... 2025-09-08T23:03:57,728 elif npbc == 1: 2025-09-08T23:03:57,729 self.nrot = 1 2025-09-08T23:03:57,729 for i, dim in enumerate(atoms.pbc): 2025-09-08T23:03:57,729 if dim: 2025-09-08T23:03:57,729 self.rot_axes[0, :] = atoms.cell[dim, :] 2025-09-08T23:03:57,729 normalize(self.rot_axes[0]) 2025-09-08T23:03:57,729 ^ 2025-09-08T23:03:57,729 ------------------------------------------------------------ 2025-09-08T23:03:57,729 sella/internal/int_classes.pyx:754:16: 'normalize' is not a constant, variable or function identifier 2025-09-08T23:03:57,733 Error compiling Cython file: 2025-09-08T23:03:57,733 ------------------------------------------------------------ 2025-09-08T23:03:57,733 ... 2025-09-08T23:03:57,733 cdef int n, j 2025-09-08T23:03:57,733 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:57,733 with nogil: 2025-09-08T23:03:57,733 if self.proj_trans: 2025-09-08T23:03:57,733 for j in range(3): 2025-09-08T23:03:57,734 self.trans_dirs[j] = True 2025-09-08T23:03:57,734 ^ 2025-09-08T23:03:57,734 ------------------------------------------------------------ 2025-09-08T23:03:57,734 sella/internal/int_classes.pyx:783:35: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,734 Error compiling Cython file: 2025-09-08T23:03:57,734 ------------------------------------------------------------ 2025-09-08T23:03:57,734 ... 2025-09-08T23:03:57,735 self.trans_dirs[j] = True 2025-09-08T23:03:57,735 for n in range(self.ncart): 2025-09-08T23:03:57,735 i = self.cart[n, 0] 2025-09-08T23:03:57,735 j = self.cart[n, 1] 2025-09-08T23:03:57,735 fixed[i, j] = True 2025-09-08T23:03:57,735 self.trans_dirs[j] = False 2025-09-08T23:03:57,735 ^ 2025-09-08T23:03:57,735 ------------------------------------------------------------ 2025-09-08T23:03:57,735 sella/internal/int_classes.pyx:788:31: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,736 Error compiling Cython file: 2025-09-08T23:03:57,736 ------------------------------------------------------------ 2025-09-08T23:03:57,736 ... 2025-09-08T23:03:57,736 n = 0 2025-09-08T23:03:57,736 for i in range(self.natoms): 2025-09-08T23:03:57,737 for j in range(3): 2025-09-08T23:03:57,737 if fixed[i, j]: 2025-09-08T23:03:57,737 continue 2025-09-08T23:03:57,737 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:57,737 ^ 2025-09-08T23:03:57,737 ------------------------------------------------------------ 2025-09-08T23:03:57,737 sella/internal/int_classes.pyx:794:29: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,737 Error compiling Cython file: 2025-09-08T23:03:57,737 ------------------------------------------------------------ 2025-09-08T23:03:57,738 ... 2025-09-08T23:03:57,738 if fixed[i, j]: 2025-09-08T23:03:57,738 continue 2025-09-08T23:03:57,738 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:57,738 n += 1 2025-09-08T23:03:57,738 self.ntrans = 0 2025-09-08T23:03:57,738 ^ 2025-09-08T23:03:57,738 ------------------------------------------------------------ 2025-09-08T23:03:57,738 sella/internal/int_classes.pyx:797:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,739 Error compiling Cython file: 2025-09-08T23:03:57,739 ------------------------------------------------------------ 2025-09-08T23:03:57,739 ... 2025-09-08T23:03:57,739 self.ntrans = 0 2025-09-08T23:03:57,739 for j in range(3): 2025-09-08T23:03:57,739 if self.trans_dirs[j]: 2025-09-08T23:03:57,739 for i in range(self.natoms): 2025-09-08T23:03:57,739 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:57,739 ^ 2025-09-08T23:03:57,739 ------------------------------------------------------------ 2025-09-08T23:03:57,740 sella/internal/int_classes.pyx:801:34: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,748 Error compiling Cython file: 2025-09-08T23:03:57,748 ------------------------------------------------------------ 2025-09-08T23:03:57,748 ... 2025-09-08T23:03:57,748 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:57,748 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:57,748 return 0 2025-09-08T23:03:57,748 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:57,749 self.calc_res = False 2025-09-08T23:03:57,749 ^ 2025-09-08T23:03:57,749 ------------------------------------------------------------ 2025-09-08T23:03:57,749 sella/internal/int_classes.pyx:844:12: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,749 Error compiling Cython file: 2025-09-08T23:03:57,749 ------------------------------------------------------------ 2025-09-08T23:03:57,749 ... 2025-09-08T23:03:57,749 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:57,750 self.calc_res = False 2025-09-08T23:03:57,750 if self.nq == 0: 2025-09-08T23:03:57,750 return 0 2025-09-08T23:03:57,750 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:57,750 ^ 2025-09-08T23:03:57,750 ------------------------------------------------------------ 2025-09-08T23:03:57,750 sella/internal/int_classes.pyx:847:15: Cannot take address of Python object 2025-09-08T23:03:57,750 Error compiling Cython file: 2025-09-08T23:03:57,750 ------------------------------------------------------------ 2025-09-08T23:03:57,751 ... 2025-09-08T23:03:57,751 return 0 2025-09-08T23:03:57,751 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:57,751 err = CartToInternal._update(self, pos, dummypos, grad, 2025-09-08T23:03:57,751 curv, True) 2025-09-08T23:03:57,751 if err != 0: 2025-09-08T23:03:57,751 self.calc_required = True 2025-09-08T23:03:57,751 ^ 2025-09-08T23:03:57,751 ------------------------------------------------------------ 2025-09-08T23:03:57,751 sella/internal/int_classes.pyx:851:16: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,752 Error compiling Cython file: 2025-09-08T23:03:57,752 ------------------------------------------------------------ 2025-09-08T23:03:57,752 ... 2025-09-08T23:03:57,752 if self.proj_trans: 2025-09-08T23:03:57,752 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:57,752 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:57,752 ntot = self.ntrans * self.nx 2025-09-08T23:03:57,752 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:57,752 ^ 2025-09-08T23:03:57,753 ------------------------------------------------------------ 2025-09-08T23:03:57,753 sella/internal/int_classes.pyx:861:25: Cannot take address of Python object 2025-09-08T23:03:57,753 Error compiling Cython file: 2025-09-08T23:03:57,753 ------------------------------------------------------------ 2025-09-08T23:03:57,753 ... 2025-09-08T23:03:57,753 if self.proj_trans: 2025-09-08T23:03:57,753 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:57,753 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:57,753 ntot = self.ntrans * self.nx 2025-09-08T23:03:57,753 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:57,754 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:57,754 ^ 2025-09-08T23:03:57,754 ------------------------------------------------------------ 2025-09-08T23:03:57,754 sella/internal/int_classes.pyx:862:18: Cannot take address of Python object 2025-09-08T23:03:57,754 Error compiling Cython file: 2025-09-08T23:03:57,754 ------------------------------------------------------------ 2025-09-08T23:03:57,754 ... 2025-09-08T23:03:57,754 err = self.project_rotation() 2025-09-08T23:03:57,754 if err != 0: return err 2025-09-08T23:03:57,755 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:57,755 ntot = self.nrot * self.nx 2025-09-08T23:03:57,755 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:57,755 ^ 2025-09-08T23:03:57,755 ------------------------------------------------------------ 2025-09-08T23:03:57,755 sella/internal/int_classes.pyx:870:25: Cannot take address of Python object 2025-09-08T23:03:57,755 Error compiling Cython file: 2025-09-08T23:03:57,755 ------------------------------------------------------------ 2025-09-08T23:03:57,755 ... 2025-09-08T23:03:57,756 if err != 0: return err 2025-09-08T23:03:57,756 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:57,756 ntot = self.nrot * self.nx 2025-09-08T23:03:57,756 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:57,756 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:57,756 ^ 2025-09-08T23:03:57,756 ------------------------------------------------------------ 2025-09-08T23:03:57,756 sella/internal/int_classes.pyx:871:18: Cannot take address of Python object 2025-09-08T23:03:57,757 Error compiling Cython file: 2025-09-08T23:03:57,757 ------------------------------------------------------------ 2025-09-08T23:03:57,757 ... 2025-09-08T23:03:57,757 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:57,757 cdef int i, j 2025-09-08T23:03:57,757 for i in range(self.nrot): 2025-09-08T23:03:57,757 for j in range(self.natoms): 2025-09-08T23:03:57,757 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:57,757 ^ 2025-09-08T23:03:57,757 ------------------------------------------------------------ 2025-09-08T23:03:57,758 sella/internal/int_classes.pyx:880:16: 'cross' is not a constant, variable or function identifier 2025-09-08T23:03:57,758 Error compiling Cython file: 2025-09-08T23:03:57,758 ------------------------------------------------------------ 2025-09-08T23:03:57,758 ... 2025-09-08T23:03:57,758 cdef int i, j 2025-09-08T23:03:57,758 for i in range(self.nrot): 2025-09-08T23:03:57,758 for j in range(self.natoms): 2025-09-08T23:03:57,758 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:57,758 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:57,759 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:57,759 ^ 2025-09-08T23:03:57,759 ------------------------------------------------------------ 2025-09-08T23:03:57,759 sella/internal/int_classes.pyx:882:23: 'mgs' is not a constant, variable or function identifier 2025-09-08T23:03:57,761 Error compiling Cython file: 2025-09-08T23:03:57,761 ------------------------------------------------------------ 2025-09-08T23:03:57,761 ... 2025-09-08T23:03:57,761 if self.calc_res: 2025-09-08T23:03:57,761 return np.asarray(self.res) 2025-09-08T23:03:57,761 cdef int i, n 2025-09-08T23:03:57,761 with nogil: 2025-09-08T23:03:57,761 for i in range(self.ninternal): 2025-09-08T23:03:57,761 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:57,761 ^ 2025-09-08T23:03:57,762 ------------------------------------------------------------ 2025-09-08T23:03:57,762 sella/internal/int_classes.pyx:900:24: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,762 Error compiling Cython file: 2025-09-08T23:03:57,762 ------------------------------------------------------------ 2025-09-08T23:03:57,762 ... 2025-09-08T23:03:57,762 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:57,763 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:57,763 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:57,763 for i in range(self.ndihedrals): 2025-09-08T23:03:57,763 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:57,763 ^ 2025-09-08T23:03:57,763 ------------------------------------------------------------ 2025-09-08T23:03:57,763 sella/internal/int_classes.pyx:905:24: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,786 Error compiling Cython file: 2025-09-08T23:03:57,787 ------------------------------------------------------------ 2025-09-08T23:03:57,787 ... 2025-09-08T23:03:57,787 for a in range(nind): 2025-09-08T23:03:57,787 ai = q[n, a] 2025-09-08T23:03:57,787 for b in range(nind): 2025-09-08T23:03:57,787 bi = q[n, b] 2025-09-08T23:03:57,787 for i in range(3): 2025-09-08T23:03:57,787 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:57,787 ^ 2025-09-08T23:03:57,787 ------------------------------------------------------------ 2025-09-08T23:03:57,787 sella/internal/int_classes.pyx:1031:30: 'my_daxpy' is not a constant, variable or function identifier 2025-09-08T23:03:57,798 Error compiling Cython file: 2025-09-08T23:03:57,798 ------------------------------------------------------------ 2025-09-08T23:03:57,798 ... 2025-09-08T23:03:57,798 cdef int dim = 3 * nind 2025-09-08T23:03:57,798 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:57,798 for n in range(nq): 2025-09-08T23:03:57,798 for a in range(nind): 2025-09-08T23:03:57,798 ai = q[n, a] 2025-09-08T23:03:57,798 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,799 ^ 2025-09-08T23:03:57,799 ------------------------------------------------------------ 2025-09-08T23:03:57,799 sella/internal/int_classes.pyx:1075:26: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,799 Error compiling Cython file: 2025-09-08T23:03:57,799 ------------------------------------------------------------ 2025-09-08T23:03:57,799 ... 2025-09-08T23:03:57,799 for n in range(nq): 2025-09-08T23:03:57,799 for a in range(nind): 2025-09-08T23:03:57,799 ai = q[n, a] 2025-09-08T23:03:57,800 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,800 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:57,800 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,800 ^ 2025-09-08T23:03:57,800 ------------------------------------------------------------ 2025-09-08T23:03:57,800 sella/internal/int_classes.pyx:1077:18: Cannot take address of Python object 2025-09-08T23:03:57,800 Error compiling Cython file: 2025-09-08T23:03:57,800 ------------------------------------------------------------ 2025-09-08T23:03:57,800 ... 2025-09-08T23:03:57,800 for n in range(nq): 2025-09-08T23:03:57,801 for a in range(nind): 2025-09-08T23:03:57,801 ai = q[n, a] 2025-09-08T23:03:57,801 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,801 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:57,801 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,801 ^ 2025-09-08T23:03:57,801 ------------------------------------------------------------ 2025-09-08T23:03:57,801 sella/internal/int_classes.pyx:1077:37: Cannot take address of Python object attribute 'sw1' 2025-09-08T23:03:57,801 Error compiling Cython file: 2025-09-08T23:03:57,801 ------------------------------------------------------------ 2025-09-08T23:03:57,802 ... 2025-09-08T23:03:57,802 for a in range(nind): 2025-09-08T23:03:57,802 ai = q[n, a] 2025-09-08T23:03:57,802 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,802 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:57,802 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,802 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:57,802 ^ 2025-09-08T23:03:57,802 ------------------------------------------------------------ 2025-09-08T23:03:57,803 sella/internal/int_classes.pyx:1078:18: Cannot take address of Python object 2025-09-08T23:03:57,803 Error compiling Cython file: 2025-09-08T23:03:57,803 ------------------------------------------------------------ 2025-09-08T23:03:57,803 ... 2025-09-08T23:03:57,803 for a in range(nind): 2025-09-08T23:03:57,803 ai = q[n, a] 2025-09-08T23:03:57,803 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,803 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:57,803 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,803 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:57,804 ^ 2025-09-08T23:03:57,804 ------------------------------------------------------------ 2025-09-08T23:03:57,804 sella/internal/int_classes.pyx:1078:37: Cannot take address of Python object attribute 'sw2' 2025-09-08T23:03:57,812 Error compiling Cython file: 2025-09-08T23:03:57,812 ------------------------------------------------------------ 2025-09-08T23:03:57,812 ... 2025-09-08T23:03:57,812 cdef int dim = 3 * nind 2025-09-08T23:03:57,812 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:57,812 for n in range(nq): 2025-09-08T23:03:57,812 for a in range(nind): 2025-09-08T23:03:57,812 ai = q[n, a] 2025-09-08T23:03:57,813 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,813 ^ 2025-09-08T23:03:57,813 ------------------------------------------------------------ 2025-09-08T23:03:57,813 sella/internal/int_classes.pyx:1124:26: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,813 Error compiling Cython file: 2025-09-08T23:03:57,813 ------------------------------------------------------------ 2025-09-08T23:03:57,813 ... 2025-09-08T23:03:57,813 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:57,813 for n in range(nq): 2025-09-08T23:03:57,814 for a in range(nind): 2025-09-08T23:03:57,814 ai = q[n, a] 2025-09-08T23:03:57,814 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,814 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,814 ^ 2025-09-08T23:03:57,814 ------------------------------------------------------------ 2025-09-08T23:03:57,814 sella/internal/int_classes.pyx:1125:26: Assignment of Python object not allowed without gil 2025-09-08T23:03:57,814 Error compiling Cython file: 2025-09-08T23:03:57,814 ------------------------------------------------------------ 2025-09-08T23:03:57,815 ... 2025-09-08T23:03:57,815 for a in range(nind): 2025-09-08T23:03:57,815 ai = q[n, a] 2025-09-08T23:03:57,815 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,815 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,815 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,815 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,815 ^ 2025-09-08T23:03:57,815 ------------------------------------------------------------ 2025-09-08T23:03:57,815 sella/internal/int_classes.pyx:1127:18: Cannot take address of Python object 2025-09-08T23:03:57,816 Error compiling Cython file: 2025-09-08T23:03:57,816 ------------------------------------------------------------ 2025-09-08T23:03:57,816 ... 2025-09-08T23:03:57,816 for a in range(nind): 2025-09-08T23:03:57,816 ai = q[n, a] 2025-09-08T23:03:57,816 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,816 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,816 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,816 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,816 ^ 2025-09-08T23:03:57,816 ------------------------------------------------------------ 2025-09-08T23:03:57,817 sella/internal/int_classes.pyx:1127:37: Cannot take address of Python object attribute 'sw1' 2025-09-08T23:03:57,817 Error compiling Cython file: 2025-09-08T23:03:57,817 ------------------------------------------------------------ 2025-09-08T23:03:57,817 ... 2025-09-08T23:03:57,817 ai = q[n, a] 2025-09-08T23:03:57,817 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,817 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,817 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,817 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,817 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,818 ^ 2025-09-08T23:03:57,818 ------------------------------------------------------------ 2025-09-08T23:03:57,818 sella/internal/int_classes.pyx:1128:18: Cannot take address of Python object 2025-09-08T23:03:57,818 Error compiling Cython file: 2025-09-08T23:03:57,818 ------------------------------------------------------------ 2025-09-08T23:03:57,818 ... 2025-09-08T23:03:57,818 ai = q[n, a] 2025-09-08T23:03:57,818 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,818 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,818 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,819 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,819 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,819 ^ 2025-09-08T23:03:57,819 ------------------------------------------------------------ 2025-09-08T23:03:57,819 sella/internal/int_classes.pyx:1128:37: Cannot take address of Python object attribute 'sw3' 2025-09-08T23:03:57,819 Error compiling Cython file: 2025-09-08T23:03:57,819 ------------------------------------------------------------ 2025-09-08T23:03:57,819 ... 2025-09-08T23:03:57,819 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,820 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,820 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,820 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,820 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,820 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:57,820 ^ 2025-09-08T23:03:57,820 ------------------------------------------------------------ 2025-09-08T23:03:57,820 sella/internal/int_classes.pyx:1129:40: Cannot take address of Python object 2025-09-08T23:03:57,820 Error compiling Cython file: 2025-09-08T23:03:57,820 ------------------------------------------------------------ 2025-09-08T23:03:57,821 ... 2025-09-08T23:03:57,821 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,821 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,821 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,821 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,821 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,821 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:57,821 ^ 2025-09-08T23:03:57,821 ------------------------------------------------------------ 2025-09-08T23:03:57,821 sella/internal/int_classes.pyx:1129:59: Cannot take address of Python object attribute 'sw2' 2025-09-08T23:03:57,822 Error compiling Cython file: 2025-09-08T23:03:57,822 ------------------------------------------------------------ 2025-09-08T23:03:57,822 ... 2025-09-08T23:03:57,822 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,822 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,822 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,822 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,822 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:57,822 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,822 ^ 2025-09-08T23:03:57,822 ------------------------------------------------------------ 2025-09-08T23:03:57,823 sella/internal/int_classes.pyx:1130:34: Cannot take address of Python object 2025-09-08T23:03:57,823 Error compiling Cython file: 2025-09-08T23:03:57,823 ------------------------------------------------------------ 2025-09-08T23:03:57,823 ... 2025-09-08T23:03:57,823 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:57,823 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:57,823 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:57,823 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,823 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:57,823 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:57,824 ^ 2025-09-08T23:03:57,824 ------------------------------------------------------------ 2025-09-08T23:03:57,824 sella/internal/int_classes.pyx:1130:53: Cannot take address of Python object attribute 'sw3' 2025-09-08T23:03:58,024 Error compiling Cython file: 2025-09-08T23:03:58,024 ------------------------------------------------------------ 2025-09-08T23:03:58,024 ... 2025-09-08T23:03:58,024 if dummypos is not None: 2025-09-08T23:03:58,024 if dummypos.shape[1] != 3: 2025-09-08T23:03:58,024 return False 2025-09-08T23:03:58,024 n_in += dummypos.shape[0] 2025-09-08T23:03:58,024 else: 2025-09-08T23:03:58,025 if self.ndummies > 0: 2025-09-08T23:03:58,025 ^ 2025-09-08T23:03:58,025 ------------------------------------------------------------ 2025-09-08T23:03:58,025 sella/internal/int_classes.pyx:235:29: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,025 Error compiling Cython file: 2025-09-08T23:03:58,025 ------------------------------------------------------------ 2025-09-08T23:03:58,025 ... 2025-09-08T23:03:58,025 if dummypos is not None: 2025-09-08T23:03:58,026 if dummypos.shape[1] != 3: 2025-09-08T23:03:58,026 return False 2025-09-08T23:03:58,026 n_in += dummypos.shape[0] 2025-09-08T23:03:58,026 else: 2025-09-08T23:03:58,026 if self.ndummies > 0: 2025-09-08T23:03:58,026 ^ 2025-09-08T23:03:58,026 ------------------------------------------------------------ 2025-09-08T23:03:58,026 sella/internal/int_classes.pyx:235:29: Operation not allowed without gil 2025-09-08T23:03:58,026 Error compiling Cython file: 2025-09-08T23:03:58,026 ------------------------------------------------------------ 2025-09-08T23:03:58,027 ... 2025-09-08T23:03:58,027 if dummypos is not None: 2025-09-08T23:03:58,027 if dummypos.shape[1] != 3: 2025-09-08T23:03:58,027 return False 2025-09-08T23:03:58,027 n_in += dummypos.shape[0] 2025-09-08T23:03:58,027 else: 2025-09-08T23:03:58,027 if self.ndummies > 0: 2025-09-08T23:03:58,027 ^ 2025-09-08T23:03:58,027 ------------------------------------------------------------ 2025-09-08T23:03:58,027 sella/internal/int_classes.pyx:235:19: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,028 Error compiling Cython file: 2025-09-08T23:03:58,028 ------------------------------------------------------------ 2025-09-08T23:03:58,028 ... 2025-09-08T23:03:58,028 n_in += dummypos.shape[0] 2025-09-08T23:03:58,028 else: 2025-09-08T23:03:58,028 if self.ndummies > 0: 2025-09-08T23:03:58,028 return False 2025-09-08T23:03:58,028 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,028 ^ 2025-09-08T23:03:58,028 ------------------------------------------------------------ 2025-09-08T23:03:58,029 sella/internal/int_classes.pyx:238:16: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,029 Error compiling Cython file: 2025-09-08T23:03:58,029 ------------------------------------------------------------ 2025-09-08T23:03:58,029 ... 2025-09-08T23:03:58,029 n_in += dummypos.shape[0] 2025-09-08T23:03:58,029 else: 2025-09-08T23:03:58,029 if self.ndummies > 0: 2025-09-08T23:03:58,029 return False 2025-09-08T23:03:58,029 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,030 ^ 2025-09-08T23:03:58,030 ------------------------------------------------------------ 2025-09-08T23:03:58,030 sella/internal/int_classes.pyx:238:16: Operation not allowed without gil 2025-09-08T23:03:58,030 Error compiling Cython file: 2025-09-08T23:03:58,030 ------------------------------------------------------------ 2025-09-08T23:03:58,030 ... 2025-09-08T23:03:58,030 n_in += dummypos.shape[0] 2025-09-08T23:03:58,030 else: 2025-09-08T23:03:58,030 if self.ndummies > 0: 2025-09-08T23:03:58,031 return False 2025-09-08T23:03:58,031 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,031 ^ 2025-09-08T23:03:58,031 ------------------------------------------------------------ 2025-09-08T23:03:58,031 sella/internal/int_classes.pyx:238:11: Converting to Python object not allowed without gil 2025-09-08T23:03:58,031 Error compiling Cython file: 2025-09-08T23:03:58,031 ------------------------------------------------------------ 2025-09-08T23:03:58,031 ... 2025-09-08T23:03:58,031 n_in += dummypos.shape[0] 2025-09-08T23:03:58,032 else: 2025-09-08T23:03:58,032 if self.ndummies > 0: 2025-09-08T23:03:58,032 return False 2025-09-08T23:03:58,032 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,032 ^ 2025-09-08T23:03:58,032 ------------------------------------------------------------ 2025-09-08T23:03:58,032 sella/internal/int_classes.pyx:238:33: Indexing Python object not allowed without gil 2025-09-08T23:03:58,032 Error compiling Cython file: 2025-09-08T23:03:58,033 ------------------------------------------------------------ 2025-09-08T23:03:58,033 ... 2025-09-08T23:03:58,033 n_in += dummypos.shape[0] 2025-09-08T23:03:58,033 else: 2025-09-08T23:03:58,033 if self.ndummies > 0: 2025-09-08T23:03:58,033 return False 2025-09-08T23:03:58,033 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,033 ^ 2025-09-08T23:03:58,033 ------------------------------------------------------------ 2025-09-08T23:03:58,033 sella/internal/int_classes.pyx:238:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,034 Error compiling Cython file: 2025-09-08T23:03:58,034 ------------------------------------------------------------ 2025-09-08T23:03:58,034 ... 2025-09-08T23:03:58,034 n_in += dummypos.shape[0] 2025-09-08T23:03:58,034 else: 2025-09-08T23:03:58,034 if self.ndummies > 0: 2025-09-08T23:03:58,034 return False 2025-09-08T23:03:58,034 if n_in != self.pos.shape[0] or pos.shape[1] != 3: 2025-09-08T23:03:58,034 ^ 2025-09-08T23:03:58,035 ------------------------------------------------------------ 2025-09-08T23:03:58,035 sella/internal/int_classes.pyx:238:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,035 Error compiling Cython file: 2025-09-08T23:03:58,035 ------------------------------------------------------------ 2025-09-08T23:03:58,035 ... 2025-09-08T23:03:58,035 return True 2025-09-08T23:03:58,035 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,035 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,035 cdef int i, j 2025-09-08T23:03:58,036 for i in range(self.nreal): 2025-09-08T23:03:58,036 ^ 2025-09-08T23:03:58,036 ------------------------------------------------------------ 2025-09-08T23:03:58,036 sella/internal/int_classes.pyx:245:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,036 Error compiling Cython file: 2025-09-08T23:03:58,036 ------------------------------------------------------------ 2025-09-08T23:03:58,036 ... 2025-09-08T23:03:58,036 return True 2025-09-08T23:03:58,036 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,037 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,037 cdef int i, j 2025-09-08T23:03:58,037 for i in range(self.nreal): 2025-09-08T23:03:58,037 ^ 2025-09-08T23:03:58,037 ------------------------------------------------------------ 2025-09-08T23:03:58,037 sella/internal/int_classes.pyx:245:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,037 Error compiling Cython file: 2025-09-08T23:03:58,037 ------------------------------------------------------------ 2025-09-08T23:03:58,037 ... 2025-09-08T23:03:58,037 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,037 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,038 cdef int i, j 2025-09-08T23:03:58,038 for i in range(self.nreal): 2025-09-08T23:03:58,038 for j in range(3): 2025-09-08T23:03:58,038 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,038 ^ 2025-09-08T23:03:58,038 ------------------------------------------------------------ 2025-09-08T23:03:58,038 sella/internal/int_classes.pyx:247:34: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,038 Error compiling Cython file: 2025-09-08T23:03:58,038 ------------------------------------------------------------ 2025-09-08T23:03:58,038 ... 2025-09-08T23:03:58,039 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,039 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,039 cdef int i, j 2025-09-08T23:03:58,039 for i in range(self.nreal): 2025-09-08T23:03:58,039 for j in range(3): 2025-09-08T23:03:58,039 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,039 ^ 2025-09-08T23:03:58,039 ------------------------------------------------------------ 2025-09-08T23:03:58,039 sella/internal/int_classes.pyx:247:34: Operation not allowed without gil 2025-09-08T23:03:58,039 Error compiling Cython file: 2025-09-08T23:03:58,040 ------------------------------------------------------------ 2025-09-08T23:03:58,040 ... 2025-09-08T23:03:58,040 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,040 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,040 cdef int i, j 2025-09-08T23:03:58,040 for i in range(self.nreal): 2025-09-08T23:03:58,040 for j in range(3): 2025-09-08T23:03:58,040 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,040 ^ 2025-09-08T23:03:58,040 ------------------------------------------------------------ 2025-09-08T23:03:58,040 sella/internal/int_classes.pyx:247:27: Indexing Python object not allowed without gil 2025-09-08T23:03:58,041 Error compiling Cython file: 2025-09-08T23:03:58,041 ------------------------------------------------------------ 2025-09-08T23:03:58,041 ... 2025-09-08T23:03:58,041 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,041 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,041 cdef int i, j 2025-09-08T23:03:58,041 for i in range(self.nreal): 2025-09-08T23:03:58,041 for j in range(3): 2025-09-08T23:03:58,041 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,041 ^ 2025-09-08T23:03:58,041 ------------------------------------------------------------ 2025-09-08T23:03:58,042 sella/internal/int_classes.pyx:247:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,042 Error compiling Cython file: 2025-09-08T23:03:58,042 ------------------------------------------------------------ 2025-09-08T23:03:58,042 ... 2025-09-08T23:03:58,042 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,042 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,042 cdef int i, j 2025-09-08T23:03:58,042 for i in range(self.nreal): 2025-09-08T23:03:58,042 for j in range(3): 2025-09-08T23:03:58,042 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,042 ^ 2025-09-08T23:03:58,043 ------------------------------------------------------------ 2025-09-08T23:03:58,043 sella/internal/int_classes.pyx:247:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,043 Error compiling Cython file: 2025-09-08T23:03:58,043 ------------------------------------------------------------ 2025-09-08T23:03:58,043 ... 2025-09-08T23:03:58,043 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,043 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,043 cdef int i, j 2025-09-08T23:03:58,043 for i in range(self.nreal): 2025-09-08T23:03:58,044 for j in range(3): 2025-09-08T23:03:58,044 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,044 ^ 2025-09-08T23:03:58,044 ------------------------------------------------------------ 2025-09-08T23:03:58,044 sella/internal/int_classes.pyx:247:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,044 Error compiling Cython file: 2025-09-08T23:03:58,044 ------------------------------------------------------------ 2025-09-08T23:03:58,044 ... 2025-09-08T23:03:58,044 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,044 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,045 cdef int i, j 2025-09-08T23:03:58,045 for i in range(self.nreal): 2025-09-08T23:03:58,045 for j in range(3): 2025-09-08T23:03:58,045 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,045 ^ 2025-09-08T23:03:58,045 ------------------------------------------------------------ 2025-09-08T23:03:58,045 sella/internal/int_classes.pyx:247:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,045 Error compiling Cython file: 2025-09-08T23:03:58,045 ------------------------------------------------------------ 2025-09-08T23:03:58,046 ... 2025-09-08T23:03:58,046 cdef bint geom_changed(CartToInternal self, double[:, :] pos, 2025-09-08T23:03:58,046 double[:, :] dummypos=None) nogil: 2025-09-08T23:03:58,046 cdef int i, j 2025-09-08T23:03:58,046 for i in range(self.nreal): 2025-09-08T23:03:58,046 for j in range(3): 2025-09-08T23:03:58,046 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,046 ^ 2025-09-08T23:03:58,046 ------------------------------------------------------------ 2025-09-08T23:03:58,046 sella/internal/int_classes.pyx:247:40: Converting to Python object not allowed without gil 2025-09-08T23:03:58,047 Error compiling Cython file: 2025-09-08T23:03:58,047 ------------------------------------------------------------ 2025-09-08T23:03:58,047 ... 2025-09-08T23:03:58,047 for i in range(self.nreal): 2025-09-08T23:03:58,047 for j in range(3): 2025-09-08T23:03:58,047 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,047 return True 2025-09-08T23:03:58,047 for i in range(self.ndummies): 2025-09-08T23:03:58,047 ^ 2025-09-08T23:03:58,047 ------------------------------------------------------------ 2025-09-08T23:03:58,048 sella/internal/int_classes.pyx:250:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,048 Error compiling Cython file: 2025-09-08T23:03:58,048 ------------------------------------------------------------ 2025-09-08T23:03:58,048 ... 2025-09-08T23:03:58,048 for i in range(self.nreal): 2025-09-08T23:03:58,048 for j in range(3): 2025-09-08T23:03:58,048 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,048 return True 2025-09-08T23:03:58,048 for i in range(self.ndummies): 2025-09-08T23:03:58,049 ^ 2025-09-08T23:03:58,049 ------------------------------------------------------------ 2025-09-08T23:03:58,049 sella/internal/int_classes.pyx:250:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,049 Error compiling Cython file: 2025-09-08T23:03:58,049 ------------------------------------------------------------ 2025-09-08T23:03:58,049 ... 2025-09-08T23:03:58,049 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,049 return True 2025-09-08T23:03:58,050 for i in range(self.ndummies): 2025-09-08T23:03:58,050 for j in range(3): 2025-09-08T23:03:58,050 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,050 ^ 2025-09-08T23:03:58,050 ------------------------------------------------------------ 2025-09-08T23:03:58,050 sella/internal/int_classes.pyx:252:47: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,050 Error compiling Cython file: 2025-09-08T23:03:58,050 ------------------------------------------------------------ 2025-09-08T23:03:58,050 ... 2025-09-08T23:03:58,050 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,051 return True 2025-09-08T23:03:58,051 for i in range(self.ndummies): 2025-09-08T23:03:58,051 for j in range(3): 2025-09-08T23:03:58,051 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,051 ^ 2025-09-08T23:03:58,051 ------------------------------------------------------------ 2025-09-08T23:03:58,051 sella/internal/int_classes.pyx:252:47: Operation not allowed without gil 2025-09-08T23:03:58,051 Error compiling Cython file: 2025-09-08T23:03:58,051 ------------------------------------------------------------ 2025-09-08T23:03:58,052 ... 2025-09-08T23:03:58,052 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,052 return True 2025-09-08T23:03:58,052 for i in range(self.ndummies): 2025-09-08T23:03:58,052 for j in range(3): 2025-09-08T23:03:58,052 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,052 ^ 2025-09-08T23:03:58,052 ------------------------------------------------------------ 2025-09-08T23:03:58,052 sella/internal/int_classes.pyx:252:27: Indexing Python object not allowed without gil 2025-09-08T23:03:58,053 Error compiling Cython file: 2025-09-08T23:03:58,053 ------------------------------------------------------------ 2025-09-08T23:03:58,053 ... 2025-09-08T23:03:58,053 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,053 return True 2025-09-08T23:03:58,053 for i in range(self.ndummies): 2025-09-08T23:03:58,053 for j in range(3): 2025-09-08T23:03:58,053 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,053 ^ 2025-09-08T23:03:58,054 ------------------------------------------------------------ 2025-09-08T23:03:58,054 sella/internal/int_classes.pyx:252:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,054 Error compiling Cython file: 2025-09-08T23:03:58,054 ------------------------------------------------------------ 2025-09-08T23:03:58,054 ... 2025-09-08T23:03:58,054 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,054 return True 2025-09-08T23:03:58,054 for i in range(self.ndummies): 2025-09-08T23:03:58,054 for j in range(3): 2025-09-08T23:03:58,055 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,055 ^ 2025-09-08T23:03:58,055 ------------------------------------------------------------ 2025-09-08T23:03:58,055 sella/internal/int_classes.pyx:252:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,055 Error compiling Cython file: 2025-09-08T23:03:58,055 ------------------------------------------------------------ 2025-09-08T23:03:58,055 ... 2025-09-08T23:03:58,055 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,055 return True 2025-09-08T23:03:58,056 for i in range(self.ndummies): 2025-09-08T23:03:58,056 for j in range(3): 2025-09-08T23:03:58,056 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,056 ^ 2025-09-08T23:03:58,056 ------------------------------------------------------------ 2025-09-08T23:03:58,056 sella/internal/int_classes.pyx:252:39: Operation not allowed without gil 2025-09-08T23:03:58,056 Error compiling Cython file: 2025-09-08T23:03:58,056 ------------------------------------------------------------ 2025-09-08T23:03:58,056 ... 2025-09-08T23:03:58,057 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,057 return True 2025-09-08T23:03:58,057 for i in range(self.ndummies): 2025-09-08T23:03:58,057 for j in range(3): 2025-09-08T23:03:58,057 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,057 ^ 2025-09-08T23:03:58,057 ------------------------------------------------------------ 2025-09-08T23:03:58,057 sella/internal/int_classes.pyx:252:32: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,057 Error compiling Cython file: 2025-09-08T23:03:58,058 ------------------------------------------------------------ 2025-09-08T23:03:58,058 ... 2025-09-08T23:03:58,058 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,058 return True 2025-09-08T23:03:58,058 for i in range(self.ndummies): 2025-09-08T23:03:58,058 for j in range(3): 2025-09-08T23:03:58,058 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,058 ^ 2025-09-08T23:03:58,058 ------------------------------------------------------------ 2025-09-08T23:03:58,059 sella/internal/int_classes.pyx:252:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,059 Error compiling Cython file: 2025-09-08T23:03:58,059 ------------------------------------------------------------ 2025-09-08T23:03:58,059 ... 2025-09-08T23:03:58,059 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,059 return True 2025-09-08T23:03:58,059 for i in range(self.ndummies): 2025-09-08T23:03:58,059 for j in range(3): 2025-09-08T23:03:58,059 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,059 ^ 2025-09-08T23:03:58,060 ------------------------------------------------------------ 2025-09-08T23:03:58,060 sella/internal/int_classes.pyx:252:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,060 Error compiling Cython file: 2025-09-08T23:03:58,060 ------------------------------------------------------------ 2025-09-08T23:03:58,060 ... 2025-09-08T23:03:58,060 if self.pos[i, j] != pos[i, j]: 2025-09-08T23:03:58,060 return True 2025-09-08T23:03:58,060 for i in range(self.ndummies): 2025-09-08T23:03:58,061 for j in range(3): 2025-09-08T23:03:58,061 if self.pos[self.nreal + i, j] != dummypos[i, j]: 2025-09-08T23:03:58,061 ^ 2025-09-08T23:03:58,061 ------------------------------------------------------------ 2025-09-08T23:03:58,061 sella/internal/int_classes.pyx:252:58: Converting to Python object not allowed without gil 2025-09-08T23:03:58,061 Error compiling Cython file: 2025-09-08T23:03:58,061 ------------------------------------------------------------ 2025-09-08T23:03:58,061 ... 2025-09-08T23:03:58,061 return -1 2025-09-08T23:03:58,061 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,062 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,062 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,062 # comparison with ==. 2025-09-08T23:03:58,062 if not self.calc_required and not force: 2025-09-08T23:03:58,062 ^ 2025-09-08T23:03:58,062 ------------------------------------------------------------ 2025-09-08T23:03:58,062 sella/internal/int_classes.pyx:269:19: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,062 Error compiling Cython file: 2025-09-08T23:03:58,063 ------------------------------------------------------------ 2025-09-08T23:03:58,063 ... 2025-09-08T23:03:58,063 return -1 2025-09-08T23:03:58,063 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,063 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,063 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,063 # comparison with ==. 2025-09-08T23:03:58,063 if not self.calc_required and not force: 2025-09-08T23:03:58,063 ^ 2025-09-08T23:03:58,063 ------------------------------------------------------------ 2025-09-08T23:03:58,064 sella/internal/int_classes.pyx:269:19: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,064 Error compiling Cython file: 2025-09-08T23:03:58,064 ------------------------------------------------------------ 2025-09-08T23:03:58,064 ... 2025-09-08T23:03:58,064 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,064 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,064 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,064 # comparison with ==. 2025-09-08T23:03:58,064 if not self.calc_required and not force: 2025-09-08T23:03:58,064 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,065 ^ 2025-09-08T23:03:58,065 ------------------------------------------------------------ 2025-09-08T23:03:58,065 sella/internal/int_classes.pyx:270:20: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,065 Error compiling Cython file: 2025-09-08T23:03:58,065 ------------------------------------------------------------ 2025-09-08T23:03:58,065 ... 2025-09-08T23:03:58,065 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,065 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,065 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,065 # comparison with ==. 2025-09-08T23:03:58,066 if not self.calc_required and not force: 2025-09-08T23:03:58,066 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,066 ^ 2025-09-08T23:03:58,066 ------------------------------------------------------------ 2025-09-08T23:03:58,066 sella/internal/int_classes.pyx:270:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,066 Error compiling Cython file: 2025-09-08T23:03:58,066 ------------------------------------------------------------ 2025-09-08T23:03:58,066 ... 2025-09-08T23:03:58,066 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,066 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,067 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,067 # comparison with ==. 2025-09-08T23:03:58,067 if not self.calc_required and not force: 2025-09-08T23:03:58,067 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,067 ^ 2025-09-08T23:03:58,067 ------------------------------------------------------------ 2025-09-08T23:03:58,067 sella/internal/int_classes.pyx:270:48: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,067 Error compiling Cython file: 2025-09-08T23:03:58,067 ------------------------------------------------------------ 2025-09-08T23:03:58,067 ... 2025-09-08T23:03:58,067 # The purpose of this check is to determine whether the positions 2025-09-08T23:03:58,068 # array has been changed at all since the last internal coordinate 2025-09-08T23:03:58,068 # evaluation, which is why we are doing exact floating point 2025-09-08T23:03:58,068 # comparison with ==. 2025-09-08T23:03:58,068 if not self.calc_required and not force: 2025-09-08T23:03:58,068 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,068 ^ 2025-09-08T23:03:58,068 ------------------------------------------------------------ 2025-09-08T23:03:58,068 sella/internal/int_classes.pyx:270:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,068 Error compiling Cython file: 2025-09-08T23:03:58,068 ------------------------------------------------------------ 2025-09-08T23:03:58,069 ... 2025-09-08T23:03:58,069 # comparison with ==. 2025-09-08T23:03:58,069 if not self.calc_required and not force: 2025-09-08T23:03:58,069 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,069 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,069 return 0 2025-09-08T23:03:58,069 self.calc_required = True 2025-09-08T23:03:58,069 ^ 2025-09-08T23:03:58,069 ------------------------------------------------------------ 2025-09-08T23:03:58,069 sella/internal/int_classes.pyx:273:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,069 Error compiling Cython file: 2025-09-08T23:03:58,070 ------------------------------------------------------------ 2025-09-08T23:03:58,070 ... 2025-09-08T23:03:58,070 if not self.calc_required and not force: 2025-09-08T23:03:58,070 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,070 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,070 return 0 2025-09-08T23:03:58,070 self.calc_required = True 2025-09-08T23:03:58,070 self.grad = grad or curv 2025-09-08T23:03:58,070 ^ 2025-09-08T23:03:58,070 ------------------------------------------------------------ 2025-09-08T23:03:58,070 sella/internal/int_classes.pyx:274:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,071 Error compiling Cython file: 2025-09-08T23:03:58,071 ------------------------------------------------------------ 2025-09-08T23:03:58,071 ... 2025-09-08T23:03:58,071 if not self.calc_required and not force: 2025-09-08T23:03:58,071 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,071 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,071 return 0 2025-09-08T23:03:58,071 self.calc_required = True 2025-09-08T23:03:58,071 self.grad = grad or curv 2025-09-08T23:03:58,071 ^ 2025-09-08T23:03:58,071 ------------------------------------------------------------ 2025-09-08T23:03:58,072 sella/internal/int_classes.pyx:274:25: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,072 Error compiling Cython file: 2025-09-08T23:03:58,072 ------------------------------------------------------------ 2025-09-08T23:03:58,072 ... 2025-09-08T23:03:58,072 if not self.calc_required and not force: 2025-09-08T23:03:58,072 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,072 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,072 return 0 2025-09-08T23:03:58,072 self.calc_required = True 2025-09-08T23:03:58,072 self.grad = grad or curv 2025-09-08T23:03:58,072 ^ 2025-09-08T23:03:58,073 ------------------------------------------------------------ 2025-09-08T23:03:58,073 sella/internal/int_classes.pyx:274:20: Converting to Python object not allowed without gil 2025-09-08T23:03:58,073 Error compiling Cython file: 2025-09-08T23:03:58,073 ------------------------------------------------------------ 2025-09-08T23:03:58,073 ... 2025-09-08T23:03:58,073 if not self.calc_required and not force: 2025-09-08T23:03:58,073 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,073 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,073 return 0 2025-09-08T23:03:58,073 self.calc_required = True 2025-09-08T23:03:58,074 self.grad = grad or curv 2025-09-08T23:03:58,074 ^ 2025-09-08T23:03:58,074 ------------------------------------------------------------ 2025-09-08T23:03:58,074 sella/internal/int_classes.pyx:274:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,074 Error compiling Cython file: 2025-09-08T23:03:58,074 ------------------------------------------------------------ 2025-09-08T23:03:58,074 ... 2025-09-08T23:03:58,074 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,074 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,074 return 0 2025-09-08T23:03:58,074 self.calc_required = True 2025-09-08T23:03:58,075 self.grad = grad or curv 2025-09-08T23:03:58,075 self.curv = curv 2025-09-08T23:03:58,075 ^ 2025-09-08T23:03:58,075 ------------------------------------------------------------ 2025-09-08T23:03:58,075 sella/internal/int_classes.pyx:275:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,075 Error compiling Cython file: 2025-09-08T23:03:58,075 ------------------------------------------------------------ 2025-09-08T23:03:58,075 ... 2025-09-08T23:03:58,075 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:58,075 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:58,076 return 0 2025-09-08T23:03:58,076 self.calc_required = True 2025-09-08T23:03:58,076 self.grad = grad or curv 2025-09-08T23:03:58,076 self.curv = curv 2025-09-08T23:03:58,076 ^ 2025-09-08T23:03:58,076 ------------------------------------------------------------ 2025-09-08T23:03:58,076 sella/internal/int_classes.pyx:275:20: Converting to Python object not allowed without gil 2025-09-08T23:03:58,076 Error compiling Cython file: 2025-09-08T23:03:58,076 ------------------------------------------------------------ 2025-09-08T23:03:58,076 ... 2025-09-08T23:03:58,076 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,077 cdef int info, err 2025-09-08T23:03:58,077 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,077 # Zero out our arrays 2025-09-08T23:03:58,077 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,077 ^ 2025-09-08T23:03:58,077 ------------------------------------------------------------ 2025-09-08T23:03:58,077 sella/internal/int_classes.pyx:281:23: Indexing Python object not allowed without gil 2025-09-08T23:03:58,077 Error compiling Cython file: 2025-09-08T23:03:58,077 ------------------------------------------------------------ 2025-09-08T23:03:58,078 ... 2025-09-08T23:03:58,078 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,078 cdef int info, err 2025-09-08T23:03:58,078 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,078 # Zero out our arrays 2025-09-08T23:03:58,078 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,078 ^ 2025-09-08T23:03:58,078 ------------------------------------------------------------ 2025-09-08T23:03:58,078 sella/internal/int_classes.pyx:281:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,078 Error compiling Cython file: 2025-09-08T23:03:58,079 ------------------------------------------------------------ 2025-09-08T23:03:58,079 ... 2025-09-08T23:03:58,079 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,079 cdef int info, err 2025-09-08T23:03:58,079 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,079 # Zero out our arrays 2025-09-08T23:03:58,079 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,079 ^ 2025-09-08T23:03:58,079 ------------------------------------------------------------ 2025-09-08T23:03:58,080 sella/internal/int_classes.pyx:281:39: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,080 Error compiling Cython file: 2025-09-08T23:03:58,080 ------------------------------------------------------------ 2025-09-08T23:03:58,080 ... 2025-09-08T23:03:58,080 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,080 cdef int info, err 2025-09-08T23:03:58,080 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,080 # Zero out our arrays 2025-09-08T23:03:58,080 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,080 ^ 2025-09-08T23:03:58,081 ------------------------------------------------------------ 2025-09-08T23:03:58,081 sella/internal/int_classes.pyx:281:39: Operation not allowed without gil 2025-09-08T23:03:58,081 Error compiling Cython file: 2025-09-08T23:03:58,081 ------------------------------------------------------------ 2025-09-08T23:03:58,081 ... 2025-09-08T23:03:58,081 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,081 cdef int info, err 2025-09-08T23:03:58,081 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,081 # Zero out our arrays 2025-09-08T23:03:58,082 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,082 ^ 2025-09-08T23:03:58,082 ------------------------------------------------------------ 2025-09-08T23:03:58,082 sella/internal/int_classes.pyx:281:35: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,082 Error compiling Cython file: 2025-09-08T23:03:58,082 ------------------------------------------------------------ 2025-09-08T23:03:58,082 ... 2025-09-08T23:03:58,082 cdef size_t n, m, i, j, k, l 2025-09-08T23:03:58,082 cdef int info, err 2025-09-08T23:03:58,082 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,083 # Zero out our arrays 2025-09-08T23:03:58,083 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,083 ^ 2025-09-08T23:03:58,083 ------------------------------------------------------------ 2025-09-08T23:03:58,083 sella/internal/int_classes.pyx:281:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,083 Error compiling Cython file: 2025-09-08T23:03:58,083 ------------------------------------------------------------ 2025-09-08T23:03:58,083 ... 2025-09-08T23:03:58,083 cdef int info, err 2025-09-08T23:03:58,084 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,084 # Zero out our arrays 2025-09-08T23:03:58,084 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,084 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,084 ^ 2025-09-08T23:03:58,084 ------------------------------------------------------------ 2025-09-08T23:03:58,084 sella/internal/int_classes.pyx:282:23: Indexing Python object not allowed without gil 2025-09-08T23:03:58,084 Error compiling Cython file: 2025-09-08T23:03:58,084 ------------------------------------------------------------ 2025-09-08T23:03:58,084 ... 2025-09-08T23:03:58,085 cdef int info, err 2025-09-08T23:03:58,085 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,085 # Zero out our arrays 2025-09-08T23:03:58,085 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,085 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,085 ^ 2025-09-08T23:03:58,085 ------------------------------------------------------------ 2025-09-08T23:03:58,085 sella/internal/int_classes.pyx:282:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,085 Error compiling Cython file: 2025-09-08T23:03:58,086 ------------------------------------------------------------ 2025-09-08T23:03:58,086 ... 2025-09-08T23:03:58,086 cdef int info, err 2025-09-08T23:03:58,086 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,086 # Zero out our arrays 2025-09-08T23:03:58,086 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,086 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,086 ^ 2025-09-08T23:03:58,086 ------------------------------------------------------------ 2025-09-08T23:03:58,086 sella/internal/int_classes.pyx:282:23: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,087 Error compiling Cython file: 2025-09-08T23:03:58,087 ------------------------------------------------------------ 2025-09-08T23:03:58,087 ... 2025-09-08T23:03:58,087 cdef int info, err 2025-09-08T23:03:58,087 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,087 # Zero out our arrays 2025-09-08T23:03:58,087 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,087 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,087 ^ 2025-09-08T23:03:58,087 ------------------------------------------------------------ 2025-09-08T23:03:58,088 sella/internal/int_classes.pyx:282:55: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,088 Error compiling Cython file: 2025-09-08T23:03:58,088 ------------------------------------------------------------ 2025-09-08T23:03:58,088 ... 2025-09-08T23:03:58,088 cdef int info, err 2025-09-08T23:03:58,088 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,088 # Zero out our arrays 2025-09-08T23:03:58,088 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,088 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,088 ^ 2025-09-08T23:03:58,088 ------------------------------------------------------------ 2025-09-08T23:03:58,089 sella/internal/int_classes.pyx:282:55: Operation not allowed without gil 2025-09-08T23:03:58,089 Error compiling Cython file: 2025-09-08T23:03:58,089 ------------------------------------------------------------ 2025-09-08T23:03:58,089 ... 2025-09-08T23:03:58,089 cdef int info, err 2025-09-08T23:03:58,089 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,089 # Zero out our arrays 2025-09-08T23:03:58,089 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,089 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,090 ^ 2025-09-08T23:03:58,090 ------------------------------------------------------------ 2025-09-08T23:03:58,090 sella/internal/int_classes.pyx:282:45: Operation not allowed without gil 2025-09-08T23:03:58,090 Error compiling Cython file: 2025-09-08T23:03:58,090 ------------------------------------------------------------ 2025-09-08T23:03:58,090 ... 2025-09-08T23:03:58,090 cdef int info, err 2025-09-08T23:03:58,090 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,090 # Zero out our arrays 2025-09-08T23:03:58,090 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,091 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,091 ^ 2025-09-08T23:03:58,091 ------------------------------------------------------------ 2025-09-08T23:03:58,091 sella/internal/int_classes.pyx:282:41: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,091 Error compiling Cython file: 2025-09-08T23:03:58,091 ------------------------------------------------------------ 2025-09-08T23:03:58,091 ... 2025-09-08T23:03:58,091 cdef int info, err 2025-09-08T23:03:58,091 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,092 # Zero out our arrays 2025-09-08T23:03:58,092 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,092 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,092 ^ 2025-09-08T23:03:58,092 ------------------------------------------------------------ 2025-09-08T23:03:58,092 sella/internal/int_classes.pyx:282:51: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,092 Error compiling Cython file: 2025-09-08T23:03:58,092 ------------------------------------------------------------ 2025-09-08T23:03:58,092 ... 2025-09-08T23:03:58,092 cdef int info, err 2025-09-08T23:03:58,093 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,093 # Zero out our arrays 2025-09-08T23:03:58,093 memset(&self.q1[0], 0, self.nq * sd) 2025-09-08T23:03:58,093 memset(&self.dq[0, 0, 0], 0, self.nq * self.nx * sd) 2025-09-08T23:03:58,093 ^ 2025-09-08T23:03:58,093 ------------------------------------------------------------ 2025-09-08T23:03:58,093 sella/internal/int_classes.pyx:282:57: Converting to Python object not allowed without gil 2025-09-08T23:03:58,093 Error compiling Cython file: 2025-09-08T23:03:58,093 ------------------------------------------------------------ 2025-09-08T23:03:58,094 ... 2025-09-08T23:03:58,094 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,094 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,094 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,094 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,094 if self.nbonds > 0: 2025-09-08T23:03:58,094 ^ 2025-09-08T23:03:58,094 ------------------------------------------------------------ 2025-09-08T23:03:58,094 sella/internal/int_classes.pyx:288:23: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,094 Error compiling Cython file: 2025-09-08T23:03:58,095 ------------------------------------------------------------ 2025-09-08T23:03:58,095 ... 2025-09-08T23:03:58,095 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,095 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,095 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,095 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,095 if self.nbonds > 0: 2025-09-08T23:03:58,095 ^ 2025-09-08T23:03:58,095 ------------------------------------------------------------ 2025-09-08T23:03:58,095 sella/internal/int_classes.pyx:288:23: Operation not allowed without gil 2025-09-08T23:03:58,096 Error compiling Cython file: 2025-09-08T23:03:58,096 ------------------------------------------------------------ 2025-09-08T23:03:58,096 ... 2025-09-08T23:03:58,096 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,096 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,096 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,096 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,096 if self.nbonds > 0: 2025-09-08T23:03:58,096 ^ 2025-09-08T23:03:58,096 ------------------------------------------------------------ 2025-09-08T23:03:58,097 sella/internal/int_classes.pyx:288:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,097 Error compiling Cython file: 2025-09-08T23:03:58,097 ------------------------------------------------------------ 2025-09-08T23:03:58,097 ... 2025-09-08T23:03:58,097 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,097 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,097 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,097 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,097 if self.nbonds > 0: 2025-09-08T23:03:58,097 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,097 ^ 2025-09-08T23:03:58,098 ------------------------------------------------------------ 2025-09-08T23:03:58,098 sella/internal/int_classes.pyx:289:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,098 Error compiling Cython file: 2025-09-08T23:03:58,098 ------------------------------------------------------------ 2025-09-08T23:03:58,098 ... 2025-09-08T23:03:58,098 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,098 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,098 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,099 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,099 if self.nbonds > 0: 2025-09-08T23:03:58,099 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,099 ^ 2025-09-08T23:03:58,099 ------------------------------------------------------------ 2025-09-08T23:03:58,099 sella/internal/int_classes.pyx:289:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,099 Error compiling Cython file: 2025-09-08T23:03:58,099 ------------------------------------------------------------ 2025-09-08T23:03:58,099 ... 2025-09-08T23:03:58,099 # I'm not sure why these "> 0" checks are necessary; according to the 2025-09-08T23:03:58,100 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,100 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,100 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,100 if self.nbonds > 0: 2025-09-08T23:03:58,100 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,100 ^ 2025-09-08T23:03:58,100 ------------------------------------------------------------ 2025-09-08T23:03:58,100 sella/internal/int_classes.pyx:289:34: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,100 Error compiling Cython file: 2025-09-08T23:03:58,100 ------------------------------------------------------------ 2025-09-08T23:03:58,100 ... 2025-09-08T23:03:58,101 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,101 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,101 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,101 if self.nbonds > 0: 2025-09-08T23:03:58,101 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,101 self.nbonds * 36 * sd) 2025-09-08T23:03:58,101 ^ 2025-09-08T23:03:58,101 ------------------------------------------------------------ 2025-09-08T23:03:58,101 sella/internal/int_classes.pyx:290:36: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,101 Error compiling Cython file: 2025-09-08T23:03:58,102 ------------------------------------------------------------ 2025-09-08T23:03:58,102 ... 2025-09-08T23:03:58,102 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,102 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,102 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,102 if self.nbonds > 0: 2025-09-08T23:03:58,102 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,102 self.nbonds * 36 * sd) 2025-09-08T23:03:58,102 ^ 2025-09-08T23:03:58,102 ------------------------------------------------------------ 2025-09-08T23:03:58,102 sella/internal/int_classes.pyx:290:36: Operation not allowed without gil 2025-09-08T23:03:58,103 Error compiling Cython file: 2025-09-08T23:03:58,103 ------------------------------------------------------------ 2025-09-08T23:03:58,103 ... 2025-09-08T23:03:58,103 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,103 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,103 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,103 if self.nbonds > 0: 2025-09-08T23:03:58,103 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,103 self.nbonds * 36 * sd) 2025-09-08T23:03:58,103 ^ 2025-09-08T23:03:58,103 ------------------------------------------------------------ 2025-09-08T23:03:58,104 sella/internal/int_classes.pyx:290:31: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,104 Error compiling Cython file: 2025-09-08T23:03:58,104 ------------------------------------------------------------ 2025-09-08T23:03:58,104 ... 2025-09-08T23:03:58,104 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,104 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,104 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,104 if self.nbonds > 0: 2025-09-08T23:03:58,104 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,104 self.nbonds * 36 * sd) 2025-09-08T23:03:58,104 ^ 2025-09-08T23:03:58,105 ------------------------------------------------------------ 2025-09-08T23:03:58,105 sella/internal/int_classes.pyx:290:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,105 Error compiling Cython file: 2025-09-08T23:03:58,105 ------------------------------------------------------------ 2025-09-08T23:03:58,105 ... 2025-09-08T23:03:58,105 # C standard, memset accepts a length of 0 (though it results in a 2025-09-08T23:03:58,105 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,105 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,105 if self.nbonds > 0: 2025-09-08T23:03:58,105 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,106 self.nbonds * 36 * sd) 2025-09-08T23:03:58,106 ^ 2025-09-08T23:03:58,106 ------------------------------------------------------------ 2025-09-08T23:03:58,106 sella/internal/int_classes.pyx:290:38: Converting to Python object not allowed without gil 2025-09-08T23:03:58,106 Error compiling Cython file: 2025-09-08T23:03:58,106 ------------------------------------------------------------ 2025-09-08T23:03:58,106 ... 2025-09-08T23:03:58,106 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,106 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,106 if self.nbonds > 0: 2025-09-08T23:03:58,106 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,107 self.nbonds * 36 * sd) 2025-09-08T23:03:58,107 if self.nangles > 0: 2025-09-08T23:03:58,107 ^ 2025-09-08T23:03:58,107 ------------------------------------------------------------ 2025-09-08T23:03:58,107 sella/internal/int_classes.pyx:291:24: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,107 Error compiling Cython file: 2025-09-08T23:03:58,107 ------------------------------------------------------------ 2025-09-08T23:03:58,107 ... 2025-09-08T23:03:58,107 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,107 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,108 if self.nbonds > 0: 2025-09-08T23:03:58,108 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,108 self.nbonds * 36 * sd) 2025-09-08T23:03:58,108 if self.nangles > 0: 2025-09-08T23:03:58,108 ^ 2025-09-08T23:03:58,108 ------------------------------------------------------------ 2025-09-08T23:03:58,108 sella/internal/int_classes.pyx:291:24: Operation not allowed without gil 2025-09-08T23:03:58,108 Error compiling Cython file: 2025-09-08T23:03:58,108 ------------------------------------------------------------ 2025-09-08T23:03:58,108 ... 2025-09-08T23:03:58,109 # no-op), but Cython keeps giving out-of-bounds errors. Maybe it's 2025-09-08T23:03:58,109 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,109 if self.nbonds > 0: 2025-09-08T23:03:58,109 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,109 self.nbonds * 36 * sd) 2025-09-08T23:03:58,109 if self.nangles > 0: 2025-09-08T23:03:58,109 ^ 2025-09-08T23:03:58,109 ------------------------------------------------------------ 2025-09-08T23:03:58,109 sella/internal/int_classes.pyx:291:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,109 Error compiling Cython file: 2025-09-08T23:03:58,109 ------------------------------------------------------------ 2025-09-08T23:03:58,110 ... 2025-09-08T23:03:58,110 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,110 if self.nbonds > 0: 2025-09-08T23:03:58,110 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,110 self.nbonds * 36 * sd) 2025-09-08T23:03:58,110 if self.nangles > 0: 2025-09-08T23:03:58,110 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,110 ^ 2025-09-08T23:03:58,110 ------------------------------------------------------------ 2025-09-08T23:03:58,110 sella/internal/int_classes.pyx:292:35: Indexing Python object not allowed without gil 2025-09-08T23:03:58,111 Error compiling Cython file: 2025-09-08T23:03:58,111 ------------------------------------------------------------ 2025-09-08T23:03:58,111 ... 2025-09-08T23:03:58,111 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,111 if self.nbonds > 0: 2025-09-08T23:03:58,111 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,111 self.nbonds * 36 * sd) 2025-09-08T23:03:58,111 if self.nangles > 0: 2025-09-08T23:03:58,111 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,111 ^ 2025-09-08T23:03:58,111 ------------------------------------------------------------ 2025-09-08T23:03:58,112 sella/internal/int_classes.pyx:292:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,112 Error compiling Cython file: 2025-09-08T23:03:58,112 ------------------------------------------------------------ 2025-09-08T23:03:58,112 ... 2025-09-08T23:03:58,112 # because indexing memoryviews of size 0 doesn't work? 2025-09-08T23:03:58,112 if self.nbonds > 0: 2025-09-08T23:03:58,112 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,112 self.nbonds * 36 * sd) 2025-09-08T23:03:58,112 if self.nangles > 0: 2025-09-08T23:03:58,112 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,112 ^ 2025-09-08T23:03:58,113 ------------------------------------------------------------ 2025-09-08T23:03:58,113 sella/internal/int_classes.pyx:292:35: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,113 Error compiling Cython file: 2025-09-08T23:03:58,113 ------------------------------------------------------------ 2025-09-08T23:03:58,113 ... 2025-09-08T23:03:58,113 if self.nbonds > 0: 2025-09-08T23:03:58,113 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,113 self.nbonds * 36 * sd) 2025-09-08T23:03:58,113 if self.nangles > 0: 2025-09-08T23:03:58,113 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,113 self.nangles * 81 * sd) 2025-09-08T23:03:58,114 ^ 2025-09-08T23:03:58,114 ------------------------------------------------------------ 2025-09-08T23:03:58,114 sella/internal/int_classes.pyx:293:37: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,114 Error compiling Cython file: 2025-09-08T23:03:58,114 ------------------------------------------------------------ 2025-09-08T23:03:58,114 ... 2025-09-08T23:03:58,114 if self.nbonds > 0: 2025-09-08T23:03:58,114 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,114 self.nbonds * 36 * sd) 2025-09-08T23:03:58,115 if self.nangles > 0: 2025-09-08T23:03:58,115 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,115 self.nangles * 81 * sd) 2025-09-08T23:03:58,115 ^ 2025-09-08T23:03:58,115 ------------------------------------------------------------ 2025-09-08T23:03:58,115 sella/internal/int_classes.pyx:293:37: Operation not allowed without gil 2025-09-08T23:03:58,115 Error compiling Cython file: 2025-09-08T23:03:58,115 ------------------------------------------------------------ 2025-09-08T23:03:58,115 ... 2025-09-08T23:03:58,115 if self.nbonds > 0: 2025-09-08T23:03:58,116 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,116 self.nbonds * 36 * sd) 2025-09-08T23:03:58,116 if self.nangles > 0: 2025-09-08T23:03:58,116 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,116 self.nangles * 81 * sd) 2025-09-08T23:03:58,116 ^ 2025-09-08T23:03:58,116 ------------------------------------------------------------ 2025-09-08T23:03:58,116 sella/internal/int_classes.pyx:293:32: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,116 Error compiling Cython file: 2025-09-08T23:03:58,116 ------------------------------------------------------------ 2025-09-08T23:03:58,117 ... 2025-09-08T23:03:58,117 if self.nbonds > 0: 2025-09-08T23:03:58,117 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,117 self.nbonds * 36 * sd) 2025-09-08T23:03:58,117 if self.nangles > 0: 2025-09-08T23:03:58,117 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,117 self.nangles * 81 * sd) 2025-09-08T23:03:58,117 ^ 2025-09-08T23:03:58,117 ------------------------------------------------------------ 2025-09-08T23:03:58,117 sella/internal/int_classes.pyx:293:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,118 Error compiling Cython file: 2025-09-08T23:03:58,118 ------------------------------------------------------------ 2025-09-08T23:03:58,118 ... 2025-09-08T23:03:58,118 if self.nbonds > 0: 2025-09-08T23:03:58,118 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,118 self.nbonds * 36 * sd) 2025-09-08T23:03:58,118 if self.nangles > 0: 2025-09-08T23:03:58,118 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,118 self.nangles * 81 * sd) 2025-09-08T23:03:58,118 ^ 2025-09-08T23:03:58,118 ------------------------------------------------------------ 2025-09-08T23:03:58,118 sella/internal/int_classes.pyx:293:39: Converting to Python object not allowed without gil 2025-09-08T23:03:58,119 Error compiling Cython file: 2025-09-08T23:03:58,119 ------------------------------------------------------------ 2025-09-08T23:03:58,119 ... 2025-09-08T23:03:58,119 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,119 self.nbonds * 36 * sd) 2025-09-08T23:03:58,119 if self.nangles > 0: 2025-09-08T23:03:58,119 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,119 self.nangles * 81 * sd) 2025-09-08T23:03:58,119 if self.ndihedrals > 0: 2025-09-08T23:03:58,119 ^ 2025-09-08T23:03:58,119 ------------------------------------------------------------ 2025-09-08T23:03:58,120 sella/internal/int_classes.pyx:294:27: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,120 Error compiling Cython file: 2025-09-08T23:03:58,120 ------------------------------------------------------------ 2025-09-08T23:03:58,120 ... 2025-09-08T23:03:58,120 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,120 self.nbonds * 36 * sd) 2025-09-08T23:03:58,120 if self.nangles > 0: 2025-09-08T23:03:58,120 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,120 self.nangles * 81 * sd) 2025-09-08T23:03:58,120 if self.ndihedrals > 0: 2025-09-08T23:03:58,121 ^ 2025-09-08T23:03:58,121 ------------------------------------------------------------ 2025-09-08T23:03:58,121 sella/internal/int_classes.pyx:294:27: Operation not allowed without gil 2025-09-08T23:03:58,121 Error compiling Cython file: 2025-09-08T23:03:58,121 ------------------------------------------------------------ 2025-09-08T23:03:58,121 ... 2025-09-08T23:03:58,121 memset(&self.d2q_bonds[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,121 self.nbonds * 36 * sd) 2025-09-08T23:03:58,121 if self.nangles > 0: 2025-09-08T23:03:58,121 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,121 self.nangles * 81 * sd) 2025-09-08T23:03:58,122 if self.ndihedrals > 0: 2025-09-08T23:03:58,122 ^ 2025-09-08T23:03:58,122 ------------------------------------------------------------ 2025-09-08T23:03:58,122 sella/internal/int_classes.pyx:294:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,122 Error compiling Cython file: 2025-09-08T23:03:58,122 ------------------------------------------------------------ 2025-09-08T23:03:58,122 ... 2025-09-08T23:03:58,122 self.nbonds * 36 * sd) 2025-09-08T23:03:58,122 if self.nangles > 0: 2025-09-08T23:03:58,122 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,123 self.nangles * 81 * sd) 2025-09-08T23:03:58,123 if self.ndihedrals > 0: 2025-09-08T23:03:58,123 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,123 ^ 2025-09-08T23:03:58,123 ------------------------------------------------------------ 2025-09-08T23:03:58,123 sella/internal/int_classes.pyx:295:38: Indexing Python object not allowed without gil 2025-09-08T23:03:58,123 Error compiling Cython file: 2025-09-08T23:03:58,123 ------------------------------------------------------------ 2025-09-08T23:03:58,123 ... 2025-09-08T23:03:58,123 self.nbonds * 36 * sd) 2025-09-08T23:03:58,124 if self.nangles > 0: 2025-09-08T23:03:58,124 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,124 self.nangles * 81 * sd) 2025-09-08T23:03:58,124 if self.ndihedrals > 0: 2025-09-08T23:03:58,124 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,124 ^ 2025-09-08T23:03:58,124 ------------------------------------------------------------ 2025-09-08T23:03:58,124 sella/internal/int_classes.pyx:295:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,124 Error compiling Cython file: 2025-09-08T23:03:58,124 ------------------------------------------------------------ 2025-09-08T23:03:58,125 ... 2025-09-08T23:03:58,125 self.nbonds * 36 * sd) 2025-09-08T23:03:58,125 if self.nangles > 0: 2025-09-08T23:03:58,125 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,125 self.nangles * 81 * sd) 2025-09-08T23:03:58,125 if self.ndihedrals > 0: 2025-09-08T23:03:58,125 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,125 ^ 2025-09-08T23:03:58,125 ------------------------------------------------------------ 2025-09-08T23:03:58,125 sella/internal/int_classes.pyx:295:38: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,125 Error compiling Cython file: 2025-09-08T23:03:58,126 ------------------------------------------------------------ 2025-09-08T23:03:58,126 ... 2025-09-08T23:03:58,126 if self.nangles > 0: 2025-09-08T23:03:58,126 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,126 self.nangles * 81 * sd) 2025-09-08T23:03:58,126 if self.ndihedrals > 0: 2025-09-08T23:03:58,126 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,126 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,126 ^ 2025-09-08T23:03:58,126 ------------------------------------------------------------ 2025-09-08T23:03:58,126 sella/internal/int_classes.pyx:296:41: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,127 Error compiling Cython file: 2025-09-08T23:03:58,127 ------------------------------------------------------------ 2025-09-08T23:03:58,127 ... 2025-09-08T23:03:58,127 if self.nangles > 0: 2025-09-08T23:03:58,127 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,127 self.nangles * 81 * sd) 2025-09-08T23:03:58,127 if self.ndihedrals > 0: 2025-09-08T23:03:58,127 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,127 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,127 ^ 2025-09-08T23:03:58,127 ------------------------------------------------------------ 2025-09-08T23:03:58,128 sella/internal/int_classes.pyx:296:41: Operation not allowed without gil 2025-09-08T23:03:58,128 Error compiling Cython file: 2025-09-08T23:03:58,128 ------------------------------------------------------------ 2025-09-08T23:03:58,128 ... 2025-09-08T23:03:58,128 if self.nangles > 0: 2025-09-08T23:03:58,128 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,128 self.nangles * 81 * sd) 2025-09-08T23:03:58,128 if self.ndihedrals > 0: 2025-09-08T23:03:58,128 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,128 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,128 ^ 2025-09-08T23:03:58,129 ------------------------------------------------------------ 2025-09-08T23:03:58,129 sella/internal/int_classes.pyx:296:35: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,129 Error compiling Cython file: 2025-09-08T23:03:58,129 ------------------------------------------------------------ 2025-09-08T23:03:58,129 ... 2025-09-08T23:03:58,129 if self.nangles > 0: 2025-09-08T23:03:58,129 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,129 self.nangles * 81 * sd) 2025-09-08T23:03:58,129 if self.ndihedrals > 0: 2025-09-08T23:03:58,129 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,129 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,130 ^ 2025-09-08T23:03:58,130 ------------------------------------------------------------ 2025-09-08T23:03:58,130 sella/internal/int_classes.pyx:296:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,130 Error compiling Cython file: 2025-09-08T23:03:58,130 ------------------------------------------------------------ 2025-09-08T23:03:58,130 ... 2025-09-08T23:03:58,130 if self.nangles > 0: 2025-09-08T23:03:58,130 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,130 self.nangles * 81 * sd) 2025-09-08T23:03:58,130 if self.ndihedrals > 0: 2025-09-08T23:03:58,131 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,131 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,131 ^ 2025-09-08T23:03:58,131 ------------------------------------------------------------ 2025-09-08T23:03:58,131 sella/internal/int_classes.pyx:296:43: Converting to Python object not allowed without gil 2025-09-08T23:03:58,131 Error compiling Cython file: 2025-09-08T23:03:58,131 ------------------------------------------------------------ 2025-09-08T23:03:58,131 ... 2025-09-08T23:03:58,131 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,132 self.nangles * 81 * sd) 2025-09-08T23:03:58,132 if self.ndihedrals > 0: 2025-09-08T23:03:58,132 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,132 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,132 if self.nangle_sums > 0: 2025-09-08T23:03:58,132 ^ 2025-09-08T23:03:58,132 ------------------------------------------------------------ 2025-09-08T23:03:58,132 sella/internal/int_classes.pyx:297:28: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,132 Error compiling Cython file: 2025-09-08T23:03:58,132 ------------------------------------------------------------ 2025-09-08T23:03:58,133 ... 2025-09-08T23:03:58,133 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,133 self.nangles * 81 * sd) 2025-09-08T23:03:58,133 if self.ndihedrals > 0: 2025-09-08T23:03:58,133 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,133 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,133 if self.nangle_sums > 0: 2025-09-08T23:03:58,133 ^ 2025-09-08T23:03:58,133 ------------------------------------------------------------ 2025-09-08T23:03:58,133 sella/internal/int_classes.pyx:297:28: Operation not allowed without gil 2025-09-08T23:03:58,134 Error compiling Cython file: 2025-09-08T23:03:58,134 ------------------------------------------------------------ 2025-09-08T23:03:58,134 ... 2025-09-08T23:03:58,134 memset(&self.d2q_angles[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,134 self.nangles * 81 * sd) 2025-09-08T23:03:58,134 if self.ndihedrals > 0: 2025-09-08T23:03:58,134 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,134 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,134 if self.nangle_sums > 0: 2025-09-08T23:03:58,134 ^ 2025-09-08T23:03:58,134 ------------------------------------------------------------ 2025-09-08T23:03:58,134 sella/internal/int_classes.pyx:297:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,135 Error compiling Cython file: 2025-09-08T23:03:58,135 ------------------------------------------------------------ 2025-09-08T23:03:58,135 ... 2025-09-08T23:03:58,135 self.nangles * 81 * sd) 2025-09-08T23:03:58,135 if self.ndihedrals > 0: 2025-09-08T23:03:58,135 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,135 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,135 if self.nangle_sums > 0: 2025-09-08T23:03:58,135 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,135 ^ 2025-09-08T23:03:58,135 ------------------------------------------------------------ 2025-09-08T23:03:58,136 sella/internal/int_classes.pyx:298:39: Indexing Python object not allowed without gil 2025-09-08T23:03:58,136 Error compiling Cython file: 2025-09-08T23:03:58,136 ------------------------------------------------------------ 2025-09-08T23:03:58,136 ... 2025-09-08T23:03:58,136 self.nangles * 81 * sd) 2025-09-08T23:03:58,136 if self.ndihedrals > 0: 2025-09-08T23:03:58,136 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,136 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,136 if self.nangle_sums > 0: 2025-09-08T23:03:58,136 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,136 ^ 2025-09-08T23:03:58,137 ------------------------------------------------------------ 2025-09-08T23:03:58,137 sella/internal/int_classes.pyx:298:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,137 Error compiling Cython file: 2025-09-08T23:03:58,137 ------------------------------------------------------------ 2025-09-08T23:03:58,137 ... 2025-09-08T23:03:58,137 self.nangles * 81 * sd) 2025-09-08T23:03:58,137 if self.ndihedrals > 0: 2025-09-08T23:03:58,137 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,137 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,137 if self.nangle_sums > 0: 2025-09-08T23:03:58,138 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,138 ^ 2025-09-08T23:03:58,138 ------------------------------------------------------------ 2025-09-08T23:03:58,138 sella/internal/int_classes.pyx:298:39: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,138 Error compiling Cython file: 2025-09-08T23:03:58,138 ------------------------------------------------------------ 2025-09-08T23:03:58,138 ... 2025-09-08T23:03:58,138 if self.ndihedrals > 0: 2025-09-08T23:03:58,138 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,138 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,139 if self.nangle_sums > 0: 2025-09-08T23:03:58,139 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,139 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,139 ^ 2025-09-08T23:03:58,139 ------------------------------------------------------------ 2025-09-08T23:03:58,139 sella/internal/int_classes.pyx:299:42: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,139 Error compiling Cython file: 2025-09-08T23:03:58,139 ------------------------------------------------------------ 2025-09-08T23:03:58,139 ... 2025-09-08T23:03:58,139 if self.ndihedrals > 0: 2025-09-08T23:03:58,139 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,140 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,140 if self.nangle_sums > 0: 2025-09-08T23:03:58,140 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,140 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,140 ^ 2025-09-08T23:03:58,140 ------------------------------------------------------------ 2025-09-08T23:03:58,140 sella/internal/int_classes.pyx:299:42: Operation not allowed without gil 2025-09-08T23:03:58,140 Error compiling Cython file: 2025-09-08T23:03:58,140 ------------------------------------------------------------ 2025-09-08T23:03:58,140 ... 2025-09-08T23:03:58,141 if self.ndihedrals > 0: 2025-09-08T23:03:58,141 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,141 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,141 if self.nangle_sums > 0: 2025-09-08T23:03:58,141 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,141 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,141 ^ 2025-09-08T23:03:58,141 ------------------------------------------------------------ 2025-09-08T23:03:58,141 sella/internal/int_classes.pyx:299:36: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,141 Error compiling Cython file: 2025-09-08T23:03:58,141 ------------------------------------------------------------ 2025-09-08T23:03:58,142 ... 2025-09-08T23:03:58,142 if self.ndihedrals > 0: 2025-09-08T23:03:58,142 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,142 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,142 if self.nangle_sums > 0: 2025-09-08T23:03:58,142 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,142 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,142 ^ 2025-09-08T23:03:58,142 ------------------------------------------------------------ 2025-09-08T23:03:58,142 sella/internal/int_classes.pyx:299:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,143 Error compiling Cython file: 2025-09-08T23:03:58,143 ------------------------------------------------------------ 2025-09-08T23:03:58,143 ... 2025-09-08T23:03:58,143 if self.ndihedrals > 0: 2025-09-08T23:03:58,143 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,143 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,143 if self.nangle_sums > 0: 2025-09-08T23:03:58,143 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,143 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,143 ^ 2025-09-08T23:03:58,143 ------------------------------------------------------------ 2025-09-08T23:03:58,144 sella/internal/int_classes.pyx:299:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,144 Error compiling Cython file: 2025-09-08T23:03:58,144 ------------------------------------------------------------ 2025-09-08T23:03:58,144 ... 2025-09-08T23:03:58,144 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,144 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,144 if self.nangle_sums > 0: 2025-09-08T23:03:58,144 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,144 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,144 if self.nangle_diffs > 0: 2025-09-08T23:03:58,145 ^ 2025-09-08T23:03:58,145 ------------------------------------------------------------ 2025-09-08T23:03:58,145 sella/internal/int_classes.pyx:300:29: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,145 Error compiling Cython file: 2025-09-08T23:03:58,145 ------------------------------------------------------------ 2025-09-08T23:03:58,145 ... 2025-09-08T23:03:58,145 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,145 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,145 if self.nangle_sums > 0: 2025-09-08T23:03:58,145 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,145 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,146 if self.nangle_diffs > 0: 2025-09-08T23:03:58,146 ^ 2025-09-08T23:03:58,146 ------------------------------------------------------------ 2025-09-08T23:03:58,146 sella/internal/int_classes.pyx:300:29: Operation not allowed without gil 2025-09-08T23:03:58,146 Error compiling Cython file: 2025-09-08T23:03:58,146 ------------------------------------------------------------ 2025-09-08T23:03:58,146 ... 2025-09-08T23:03:58,146 memset(&self.d2q_dihedrals[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,146 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,146 if self.nangle_sums > 0: 2025-09-08T23:03:58,147 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,147 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,147 if self.nangle_diffs > 0: 2025-09-08T23:03:58,147 ^ 2025-09-08T23:03:58,147 ------------------------------------------------------------ 2025-09-08T23:03:58,147 sella/internal/int_classes.pyx:300:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,147 Error compiling Cython file: 2025-09-08T23:03:58,147 ------------------------------------------------------------ 2025-09-08T23:03:58,147 ... 2025-09-08T23:03:58,147 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,148 if self.nangle_sums > 0: 2025-09-08T23:03:58,148 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,148 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,148 if self.nangle_diffs > 0: 2025-09-08T23:03:58,148 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,148 ^ 2025-09-08T23:03:58,148 ------------------------------------------------------------ 2025-09-08T23:03:58,148 sella/internal/int_classes.pyx:301:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,148 Error compiling Cython file: 2025-09-08T23:03:58,149 ------------------------------------------------------------ 2025-09-08T23:03:58,149 ... 2025-09-08T23:03:58,149 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,149 if self.nangle_sums > 0: 2025-09-08T23:03:58,149 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,149 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,149 if self.nangle_diffs > 0: 2025-09-08T23:03:58,149 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,149 ^ 2025-09-08T23:03:58,149 ------------------------------------------------------------ 2025-09-08T23:03:58,149 sella/internal/int_classes.pyx:301:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,150 Error compiling Cython file: 2025-09-08T23:03:58,150 ------------------------------------------------------------ 2025-09-08T23:03:58,150 ... 2025-09-08T23:03:58,150 self.ndihedrals * 144 * sd) 2025-09-08T23:03:58,150 if self.nangle_sums > 0: 2025-09-08T23:03:58,150 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,150 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,150 if self.nangle_diffs > 0: 2025-09-08T23:03:58,150 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,150 ^ 2025-09-08T23:03:58,150 ------------------------------------------------------------ 2025-09-08T23:03:58,151 sella/internal/int_classes.pyx:301:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,151 Error compiling Cython file: 2025-09-08T23:03:58,151 ------------------------------------------------------------ 2025-09-08T23:03:58,151 ... 2025-09-08T23:03:58,151 if self.nangle_sums > 0: 2025-09-08T23:03:58,151 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,151 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,151 if self.nangle_diffs > 0: 2025-09-08T23:03:58,151 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,151 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,152 ^ 2025-09-08T23:03:58,152 ------------------------------------------------------------ 2025-09-08T23:03:58,152 sella/internal/int_classes.pyx:302:43: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,152 Error compiling Cython file: 2025-09-08T23:03:58,152 ------------------------------------------------------------ 2025-09-08T23:03:58,152 ... 2025-09-08T23:03:58,152 if self.nangle_sums > 0: 2025-09-08T23:03:58,152 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,152 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,152 if self.nangle_diffs > 0: 2025-09-08T23:03:58,153 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,153 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,153 ^ 2025-09-08T23:03:58,153 ------------------------------------------------------------ 2025-09-08T23:03:58,153 sella/internal/int_classes.pyx:302:43: Operation not allowed without gil 2025-09-08T23:03:58,153 Error compiling Cython file: 2025-09-08T23:03:58,153 ------------------------------------------------------------ 2025-09-08T23:03:58,153 ... 2025-09-08T23:03:58,153 if self.nangle_sums > 0: 2025-09-08T23:03:58,153 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,153 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,154 if self.nangle_diffs > 0: 2025-09-08T23:03:58,154 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,154 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,154 ^ 2025-09-08T23:03:58,154 ------------------------------------------------------------ 2025-09-08T23:03:58,154 sella/internal/int_classes.pyx:302:37: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,154 Error compiling Cython file: 2025-09-08T23:03:58,154 ------------------------------------------------------------ 2025-09-08T23:03:58,154 ... 2025-09-08T23:03:58,154 if self.nangle_sums > 0: 2025-09-08T23:03:58,155 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,155 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,155 if self.nangle_diffs > 0: 2025-09-08T23:03:58,155 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,155 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,155 ^ 2025-09-08T23:03:58,155 ------------------------------------------------------------ 2025-09-08T23:03:58,155 sella/internal/int_classes.pyx:302:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,155 Error compiling Cython file: 2025-09-08T23:03:58,155 ------------------------------------------------------------ 2025-09-08T23:03:58,155 ... 2025-09-08T23:03:58,156 if self.nangle_sums > 0: 2025-09-08T23:03:58,156 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,156 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,156 if self.nangle_diffs > 0: 2025-09-08T23:03:58,156 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,156 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,156 ^ 2025-09-08T23:03:58,156 ------------------------------------------------------------ 2025-09-08T23:03:58,156 sella/internal/int_classes.pyx:302:45: Converting to Python object not allowed without gil 2025-09-08T23:03:58,156 Error compiling Cython file: 2025-09-08T23:03:58,157 ------------------------------------------------------------ 2025-09-08T23:03:58,157 ... 2025-09-08T23:03:58,157 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,157 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,157 if self.nangle_diffs > 0: 2025-09-08T23:03:58,157 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,157 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,157 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,157 ^ 2025-09-08T23:03:58,157 ------------------------------------------------------------ 2025-09-08T23:03:58,157 sella/internal/int_classes.pyx:303:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,158 Error compiling Cython file: 2025-09-08T23:03:58,158 ------------------------------------------------------------ 2025-09-08T23:03:58,158 ... 2025-09-08T23:03:58,158 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,158 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,158 if self.nangle_diffs > 0: 2025-09-08T23:03:58,158 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,158 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,158 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,158 ^ 2025-09-08T23:03:58,158 ------------------------------------------------------------ 2025-09-08T23:03:58,159 sella/internal/int_classes.pyx:303:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,159 Error compiling Cython file: 2025-09-08T23:03:58,159 ------------------------------------------------------------ 2025-09-08T23:03:58,159 ... 2025-09-08T23:03:58,159 memset(&self.d2q_angle_sums[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,159 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,159 if self.nangle_diffs > 0: 2025-09-08T23:03:58,159 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,159 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,159 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,159 ^ 2025-09-08T23:03:58,160 ------------------------------------------------------------ 2025-09-08T23:03:58,160 sella/internal/int_classes.pyx:303:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,160 Error compiling Cython file: 2025-09-08T23:03:58,160 ------------------------------------------------------------ 2025-09-08T23:03:58,160 ... 2025-09-08T23:03:58,160 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,160 if self.nangle_diffs > 0: 2025-09-08T23:03:58,160 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,160 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,160 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,161 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,161 ^ 2025-09-08T23:03:58,161 ------------------------------------------------------------ 2025-09-08T23:03:58,161 sella/internal/int_classes.pyx:304:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,161 Error compiling Cython file: 2025-09-08T23:03:58,161 ------------------------------------------------------------ 2025-09-08T23:03:58,161 ... 2025-09-08T23:03:58,161 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,161 if self.nangle_diffs > 0: 2025-09-08T23:03:58,161 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,161 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,162 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,162 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,162 ^ 2025-09-08T23:03:58,162 ------------------------------------------------------------ 2025-09-08T23:03:58,162 sella/internal/int_classes.pyx:304:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,162 Error compiling Cython file: 2025-09-08T23:03:58,162 ------------------------------------------------------------ 2025-09-08T23:03:58,162 ... 2025-09-08T23:03:58,162 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,162 if self.nangle_diffs > 0: 2025-09-08T23:03:58,163 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,163 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,163 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,163 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,163 ^ 2025-09-08T23:03:58,163 ------------------------------------------------------------ 2025-09-08T23:03:58,163 sella/internal/int_classes.pyx:304:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,163 Error compiling Cython file: 2025-09-08T23:03:58,163 ------------------------------------------------------------ 2025-09-08T23:03:58,163 ... 2025-09-08T23:03:58,164 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,164 if self.nangle_diffs > 0: 2025-09-08T23:03:58,164 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,164 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,164 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,164 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,164 ^ 2025-09-08T23:03:58,164 ------------------------------------------------------------ 2025-09-08T23:03:58,164 sella/internal/int_classes.pyx:304:45: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,164 Error compiling Cython file: 2025-09-08T23:03:58,165 ------------------------------------------------------------ 2025-09-08T23:03:58,165 ... 2025-09-08T23:03:58,165 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,165 if self.nangle_diffs > 0: 2025-09-08T23:03:58,165 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,165 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,165 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,165 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,165 ^ 2025-09-08T23:03:58,165 ------------------------------------------------------------ 2025-09-08T23:03:58,166 sella/internal/int_classes.pyx:304:45: Operation not allowed without gil 2025-09-08T23:03:58,166 Error compiling Cython file: 2025-09-08T23:03:58,166 ------------------------------------------------------------ 2025-09-08T23:03:58,166 ... 2025-09-08T23:03:58,166 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,166 if self.nangle_diffs > 0: 2025-09-08T23:03:58,166 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,166 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,166 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,166 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,166 ^ 2025-09-08T23:03:58,166 ------------------------------------------------------------ 2025-09-08T23:03:58,167 sella/internal/int_classes.pyx:304:41: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,167 Error compiling Cython file: 2025-09-08T23:03:58,167 ------------------------------------------------------------ 2025-09-08T23:03:58,167 ... 2025-09-08T23:03:58,167 self.nangle_sums * 144 * sd) 2025-09-08T23:03:58,167 if self.nangle_diffs > 0: 2025-09-08T23:03:58,167 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,167 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,167 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,167 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,168 ^ 2025-09-08T23:03:58,168 ------------------------------------------------------------ 2025-09-08T23:03:58,168 sella/internal/int_classes.pyx:304:47: Converting to Python object not allowed without gil 2025-09-08T23:03:58,168 Error compiling Cython file: 2025-09-08T23:03:58,168 ------------------------------------------------------------ 2025-09-08T23:03:58,168 ... 2025-09-08T23:03:58,168 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,168 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,168 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,168 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,169 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,169 ^ 2025-09-08T23:03:58,169 ------------------------------------------------------------ 2025-09-08T23:03:58,169 sella/internal/int_classes.pyx:306:16: Indexing Python object not allowed without gil 2025-09-08T23:03:58,169 Error compiling Cython file: 2025-09-08T23:03:58,169 ------------------------------------------------------------ 2025-09-08T23:03:58,169 ... 2025-09-08T23:03:58,169 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,169 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,169 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,170 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,170 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,170 ^ 2025-09-08T23:03:58,170 ------------------------------------------------------------ 2025-09-08T23:03:58,170 sella/internal/int_classes.pyx:306:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,170 Error compiling Cython file: 2025-09-08T23:03:58,170 ------------------------------------------------------------ 2025-09-08T23:03:58,170 ... 2025-09-08T23:03:58,170 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,171 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,171 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,171 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,171 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,171 ^ 2025-09-08T23:03:58,171 ------------------------------------------------------------ 2025-09-08T23:03:58,171 sella/internal/int_classes.pyx:306:16: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,171 Error compiling Cython file: 2025-09-08T23:03:58,171 ------------------------------------------------------------ 2025-09-08T23:03:58,172 ... 2025-09-08T23:03:58,172 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,172 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,172 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,172 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,172 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,172 ^ 2025-09-08T23:03:58,172 ------------------------------------------------------------ 2025-09-08T23:03:58,172 sella/internal/int_classes.pyx:306:16: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,173 Error compiling Cython file: 2025-09-08T23:03:58,173 ------------------------------------------------------------ 2025-09-08T23:03:58,173 ... 2025-09-08T23:03:58,173 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,173 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,173 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,173 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,173 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,173 ^ 2025-09-08T23:03:58,173 ------------------------------------------------------------ 2025-09-08T23:03:58,173 sella/internal/int_classes.pyx:306:22: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,174 Error compiling Cython file: 2025-09-08T23:03:58,174 ------------------------------------------------------------ 2025-09-08T23:03:58,174 ... 2025-09-08T23:03:58,174 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,174 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,174 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,174 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,174 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,174 ^ 2025-09-08T23:03:58,174 ------------------------------------------------------------ 2025-09-08T23:03:58,175 sella/internal/int_classes.pyx:306:16: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,175 Error compiling Cython file: 2025-09-08T23:03:58,175 ------------------------------------------------------------ 2025-09-08T23:03:58,175 ... 2025-09-08T23:03:58,175 memset(&self.d2q_angle_diffs[0, 0, 0, 0, 0], 0, 2025-09-08T23:03:58,175 self.nangle_diffs * 144 * sd) 2025-09-08T23:03:58,175 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,175 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,175 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,175 ^ 2025-09-08T23:03:58,176 ------------------------------------------------------------ 2025-09-08T23:03:58,176 sella/internal/int_classes.pyx:306:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,176 Error compiling Cython file: 2025-09-08T23:03:58,176 ------------------------------------------------------------ 2025-09-08T23:03:58,176 ... 2025-09-08T23:03:58,176 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,176 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,176 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,176 if dummypos is not None: 2025-09-08T23:03:58,177 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,177 ^ 2025-09-08T23:03:58,177 ------------------------------------------------------------ 2025-09-08T23:03:58,177 sella/internal/int_classes.pyx:308:20: Indexing Python object not allowed without gil 2025-09-08T23:03:58,177 Error compiling Cython file: 2025-09-08T23:03:58,177 ------------------------------------------------------------ 2025-09-08T23:03:58,177 ... 2025-09-08T23:03:58,177 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,177 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,178 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,178 if dummypos is not None: 2025-09-08T23:03:58,178 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,178 ^ 2025-09-08T23:03:58,178 ------------------------------------------------------------ 2025-09-08T23:03:58,178 sella/internal/int_classes.pyx:308:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,178 Error compiling Cython file: 2025-09-08T23:03:58,178 ------------------------------------------------------------ 2025-09-08T23:03:58,178 ... 2025-09-08T23:03:58,178 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,178 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,179 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,179 if dummypos is not None: 2025-09-08T23:03:58,179 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,179 ^ 2025-09-08T23:03:58,179 ------------------------------------------------------------ 2025-09-08T23:03:58,179 sella/internal/int_classes.pyx:308:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,179 Error compiling Cython file: 2025-09-08T23:03:58,179 ------------------------------------------------------------ 2025-09-08T23:03:58,179 ... 2025-09-08T23:03:58,180 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,180 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,180 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,180 if dummypos is not None: 2025-09-08T23:03:58,180 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,180 ^ 2025-09-08T23:03:58,180 ------------------------------------------------------------ 2025-09-08T23:03:58,180 sella/internal/int_classes.pyx:308:20: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,180 Error compiling Cython file: 2025-09-08T23:03:58,181 ------------------------------------------------------------ 2025-09-08T23:03:58,181 ... 2025-09-08T23:03:58,181 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,181 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,181 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,181 if dummypos is not None: 2025-09-08T23:03:58,181 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,181 ^ 2025-09-08T23:03:58,181 ------------------------------------------------------------ 2025-09-08T23:03:58,181 sella/internal/int_classes.pyx:308:25: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,182 Error compiling Cython file: 2025-09-08T23:03:58,182 ------------------------------------------------------------ 2025-09-08T23:03:58,182 ... 2025-09-08T23:03:58,182 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,182 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,182 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,182 if dummypos is not None: 2025-09-08T23:03:58,182 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,182 ^ 2025-09-08T23:03:58,182 ------------------------------------------------------------ 2025-09-08T23:03:58,183 sella/internal/int_classes.pyx:308:20: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,183 Error compiling Cython file: 2025-09-08T23:03:58,183 ------------------------------------------------------------ 2025-09-08T23:03:58,183 ... 2025-09-08T23:03:58,183 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,183 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,183 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,183 if dummypos is not None: 2025-09-08T23:03:58,184 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,184 ^ 2025-09-08T23:03:58,184 ------------------------------------------------------------ 2025-09-08T23:03:58,184 sella/internal/int_classes.pyx:308:39: Converting to Python object not allowed without gil 2025-09-08T23:03:58,184 Error compiling Cython file: 2025-09-08T23:03:58,184 ------------------------------------------------------------ 2025-09-08T23:03:58,184 ... 2025-09-08T23:03:58,184 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,184 if dummypos is not None: 2025-09-08T23:03:58,185 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,185 for n in range(self.ncart): 2025-09-08T23:03:58,185 ^ 2025-09-08T23:03:58,185 ------------------------------------------------------------ 2025-09-08T23:03:58,185 sella/internal/int_classes.pyx:310:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,185 Error compiling Cython file: 2025-09-08T23:03:58,185 ------------------------------------------------------------ 2025-09-08T23:03:58,185 ... 2025-09-08T23:03:58,185 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,186 if dummypos is not None: 2025-09-08T23:03:58,186 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,186 for n in range(self.ncart): 2025-09-08T23:03:58,186 ^ 2025-09-08T23:03:58,186 ------------------------------------------------------------ 2025-09-08T23:03:58,186 sella/internal/int_classes.pyx:310:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,186 Error compiling Cython file: 2025-09-08T23:03:58,186 ------------------------------------------------------------ 2025-09-08T23:03:58,186 ... 2025-09-08T23:03:58,187 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,187 if dummypos is not None: 2025-09-08T23:03:58,187 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,187 for n in range(self.ncart): 2025-09-08T23:03:58,187 i = self.cart[n, 0] 2025-09-08T23:03:58,187 ^ 2025-09-08T23:03:58,187 ------------------------------------------------------------ 2025-09-08T23:03:58,187 sella/internal/int_classes.pyx:311:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,187 Error compiling Cython file: 2025-09-08T23:03:58,187 ------------------------------------------------------------ 2025-09-08T23:03:58,188 ... 2025-09-08T23:03:58,188 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,188 if dummypos is not None: 2025-09-08T23:03:58,188 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,188 for n in range(self.ncart): 2025-09-08T23:03:58,188 i = self.cart[n, 0] 2025-09-08T23:03:58,188 ^ 2025-09-08T23:03:58,188 ------------------------------------------------------------ 2025-09-08T23:03:58,188 sella/internal/int_classes.pyx:311:25: Indexing Python object not allowed without gil 2025-09-08T23:03:58,189 Error compiling Cython file: 2025-09-08T23:03:58,189 ------------------------------------------------------------ 2025-09-08T23:03:58,189 ... 2025-09-08T23:03:58,189 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,189 if dummypos is not None: 2025-09-08T23:03:58,189 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,189 for n in range(self.ncart): 2025-09-08T23:03:58,189 i = self.cart[n, 0] 2025-09-08T23:03:58,189 ^ 2025-09-08T23:03:58,189 ------------------------------------------------------------ 2025-09-08T23:03:58,190 sella/internal/int_classes.pyx:311:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,190 Error compiling Cython file: 2025-09-08T23:03:58,190 ------------------------------------------------------------ 2025-09-08T23:03:58,190 ... 2025-09-08T23:03:58,190 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,190 if dummypos is not None: 2025-09-08T23:03:58,190 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,190 for n in range(self.ncart): 2025-09-08T23:03:58,190 i = self.cart[n, 0] 2025-09-08T23:03:58,190 ^ 2025-09-08T23:03:58,190 ------------------------------------------------------------ 2025-09-08T23:03:58,191 sella/internal/int_classes.pyx:311:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,191 Error compiling Cython file: 2025-09-08T23:03:58,191 ------------------------------------------------------------ 2025-09-08T23:03:58,191 ... 2025-09-08T23:03:58,191 self.pos[:self.nreal, :] = pos 2025-09-08T23:03:58,191 if dummypos is not None: 2025-09-08T23:03:58,191 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,191 for n in range(self.ncart): 2025-09-08T23:03:58,191 i = self.cart[n, 0] 2025-09-08T23:03:58,192 ^ 2025-09-08T23:03:58,192 ------------------------------------------------------------ 2025-09-08T23:03:58,192 sella/internal/int_classes.pyx:311:26: Converting to Python object not allowed without gil 2025-09-08T23:03:58,192 Error compiling Cython file: 2025-09-08T23:03:58,192 ------------------------------------------------------------ 2025-09-08T23:03:58,192 ... 2025-09-08T23:03:58,192 if dummypos is not None: 2025-09-08T23:03:58,192 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,192 for n in range(self.ncart): 2025-09-08T23:03:58,193 i = self.cart[n, 0] 2025-09-08T23:03:58,193 j = self.cart[n, 1] 2025-09-08T23:03:58,193 ^ 2025-09-08T23:03:58,193 ------------------------------------------------------------ 2025-09-08T23:03:58,193 sella/internal/int_classes.pyx:312:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,193 Error compiling Cython file: 2025-09-08T23:03:58,193 ------------------------------------------------------------ 2025-09-08T23:03:58,193 ... 2025-09-08T23:03:58,193 if dummypos is not None: 2025-09-08T23:03:58,193 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,194 for n in range(self.ncart): 2025-09-08T23:03:58,194 i = self.cart[n, 0] 2025-09-08T23:03:58,194 j = self.cart[n, 1] 2025-09-08T23:03:58,194 ^ 2025-09-08T23:03:58,194 ------------------------------------------------------------ 2025-09-08T23:03:58,194 sella/internal/int_classes.pyx:312:25: Indexing Python object not allowed without gil 2025-09-08T23:03:58,194 Error compiling Cython file: 2025-09-08T23:03:58,194 ------------------------------------------------------------ 2025-09-08T23:03:58,194 ... 2025-09-08T23:03:58,194 if dummypos is not None: 2025-09-08T23:03:58,195 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,195 for n in range(self.ncart): 2025-09-08T23:03:58,195 i = self.cart[n, 0] 2025-09-08T23:03:58,195 j = self.cart[n, 1] 2025-09-08T23:03:58,195 ^ 2025-09-08T23:03:58,195 ------------------------------------------------------------ 2025-09-08T23:03:58,195 sella/internal/int_classes.pyx:312:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,195 Error compiling Cython file: 2025-09-08T23:03:58,195 ------------------------------------------------------------ 2025-09-08T23:03:58,196 ... 2025-09-08T23:03:58,196 if dummypos is not None: 2025-09-08T23:03:58,196 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,196 for n in range(self.ncart): 2025-09-08T23:03:58,196 i = self.cart[n, 0] 2025-09-08T23:03:58,196 j = self.cart[n, 1] 2025-09-08T23:03:58,196 ^ 2025-09-08T23:03:58,196 ------------------------------------------------------------ 2025-09-08T23:03:58,196 sella/internal/int_classes.pyx:312:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,197 Error compiling Cython file: 2025-09-08T23:03:58,197 ------------------------------------------------------------ 2025-09-08T23:03:58,197 ... 2025-09-08T23:03:58,197 if dummypos is not None: 2025-09-08T23:03:58,197 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,197 for n in range(self.ncart): 2025-09-08T23:03:58,197 i = self.cart[n, 0] 2025-09-08T23:03:58,197 j = self.cart[n, 1] 2025-09-08T23:03:58,197 ^ 2025-09-08T23:03:58,197 ------------------------------------------------------------ 2025-09-08T23:03:58,197 sella/internal/int_classes.pyx:312:26: Converting to Python object not allowed without gil 2025-09-08T23:03:58,198 Error compiling Cython file: 2025-09-08T23:03:58,198 ------------------------------------------------------------ 2025-09-08T23:03:58,198 ... 2025-09-08T23:03:58,198 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,198 for n in range(self.ncart): 2025-09-08T23:03:58,198 i = self.cart[n, 0] 2025-09-08T23:03:58,198 j = self.cart[n, 1] 2025-09-08T23:03:58,198 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,198 ^ 2025-09-08T23:03:58,198 ------------------------------------------------------------ 2025-09-08T23:03:58,199 sella/internal/int_classes.pyx:313:19: Indexing Python object not allowed without gil 2025-09-08T23:03:58,199 Error compiling Cython file: 2025-09-08T23:03:58,199 ------------------------------------------------------------ 2025-09-08T23:03:58,199 ... 2025-09-08T23:03:58,199 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,199 for n in range(self.ncart): 2025-09-08T23:03:58,199 i = self.cart[n, 0] 2025-09-08T23:03:58,199 j = self.cart[n, 1] 2025-09-08T23:03:58,199 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,199 ^ 2025-09-08T23:03:58,200 ------------------------------------------------------------ 2025-09-08T23:03:58,200 sella/internal/int_classes.pyx:313:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,200 Error compiling Cython file: 2025-09-08T23:03:58,200 ------------------------------------------------------------ 2025-09-08T23:03:58,200 ... 2025-09-08T23:03:58,200 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,200 for n in range(self.ncart): 2025-09-08T23:03:58,200 i = self.cart[n, 0] 2025-09-08T23:03:58,200 j = self.cart[n, 1] 2025-09-08T23:03:58,201 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,201 ^ 2025-09-08T23:03:58,201 ------------------------------------------------------------ 2025-09-08T23:03:58,201 sella/internal/int_classes.pyx:313:33: Indexing Python object not allowed without gil 2025-09-08T23:03:58,201 Error compiling Cython file: 2025-09-08T23:03:58,201 ------------------------------------------------------------ 2025-09-08T23:03:58,201 ... 2025-09-08T23:03:58,201 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,201 for n in range(self.ncart): 2025-09-08T23:03:58,202 i = self.cart[n, 0] 2025-09-08T23:03:58,202 j = self.cart[n, 1] 2025-09-08T23:03:58,202 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,202 ^ 2025-09-08T23:03:58,202 ------------------------------------------------------------ 2025-09-08T23:03:58,202 sella/internal/int_classes.pyx:313:29: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,202 Error compiling Cython file: 2025-09-08T23:03:58,202 ------------------------------------------------------------ 2025-09-08T23:03:58,202 ... 2025-09-08T23:03:58,202 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,203 for n in range(self.ncart): 2025-09-08T23:03:58,203 i = self.cart[n, 0] 2025-09-08T23:03:58,203 j = self.cart[n, 1] 2025-09-08T23:03:58,203 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,203 ^ 2025-09-08T23:03:58,203 ------------------------------------------------------------ 2025-09-08T23:03:58,203 sella/internal/int_classes.pyx:313:33: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,203 Error compiling Cython file: 2025-09-08T23:03:58,203 ------------------------------------------------------------ 2025-09-08T23:03:58,204 ... 2025-09-08T23:03:58,204 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,204 for n in range(self.ncart): 2025-09-08T23:03:58,204 i = self.cart[n, 0] 2025-09-08T23:03:58,204 j = self.cart[n, 1] 2025-09-08T23:03:58,204 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,204 ^ 2025-09-08T23:03:58,204 ------------------------------------------------------------ 2025-09-08T23:03:58,204 sella/internal/int_classes.pyx:313:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,205 Error compiling Cython file: 2025-09-08T23:03:58,205 ------------------------------------------------------------ 2025-09-08T23:03:58,205 ... 2025-09-08T23:03:58,205 self.pos[self.nreal:, :] = dummypos 2025-09-08T23:03:58,205 for n in range(self.ncart): 2025-09-08T23:03:58,205 i = self.cart[n, 0] 2025-09-08T23:03:58,205 j = self.cart[n, 1] 2025-09-08T23:03:58,205 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,205 ^ 2025-09-08T23:03:58,205 ------------------------------------------------------------ 2025-09-08T23:03:58,206 sella/internal/int_classes.pyx:313:37: Converting to Python object not allowed without gil 2025-09-08T23:03:58,206 Error compiling Cython file: 2025-09-08T23:03:58,206 ------------------------------------------------------------ 2025-09-08T23:03:58,206 ... 2025-09-08T23:03:58,206 for n in range(self.ncart): 2025-09-08T23:03:58,206 i = self.cart[n, 0] 2025-09-08T23:03:58,206 j = self.cart[n, 1] 2025-09-08T23:03:58,206 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,206 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,206 ^ 2025-09-08T23:03:58,207 ------------------------------------------------------------ 2025-09-08T23:03:58,207 sella/internal/int_classes.pyx:314:19: Indexing Python object not allowed without gil 2025-09-08T23:03:58,207 Error compiling Cython file: 2025-09-08T23:03:58,207 ------------------------------------------------------------ 2025-09-08T23:03:58,207 ... 2025-09-08T23:03:58,207 for n in range(self.ncart): 2025-09-08T23:03:58,207 i = self.cart[n, 0] 2025-09-08T23:03:58,207 j = self.cart[n, 1] 2025-09-08T23:03:58,207 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,208 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,208 ^ 2025-09-08T23:03:58,208 ------------------------------------------------------------ 2025-09-08T23:03:58,208 sella/internal/int_classes.pyx:314:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,208 Error compiling Cython file: 2025-09-08T23:03:58,208 ------------------------------------------------------------ 2025-09-08T23:03:58,208 ... 2025-09-08T23:03:58,208 for n in range(self.ncart): 2025-09-08T23:03:58,208 i = self.cart[n, 0] 2025-09-08T23:03:58,208 j = self.cart[n, 1] 2025-09-08T23:03:58,209 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,209 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,209 ^ 2025-09-08T23:03:58,209 ------------------------------------------------------------ 2025-09-08T23:03:58,209 sella/internal/int_classes.pyx:314:19: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,209 Error compiling Cython file: 2025-09-08T23:03:58,209 ------------------------------------------------------------ 2025-09-08T23:03:58,209 ... 2025-09-08T23:03:58,209 for n in range(self.ncart): 2025-09-08T23:03:58,210 i = self.cart[n, 0] 2025-09-08T23:03:58,210 j = self.cart[n, 1] 2025-09-08T23:03:58,210 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,210 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,210 ^ 2025-09-08T23:03:58,210 ------------------------------------------------------------ 2025-09-08T23:03:58,210 sella/internal/int_classes.pyx:314:20: Converting to Python object not allowed without gil 2025-09-08T23:03:58,210 Error compiling Cython file: 2025-09-08T23:03:58,210 ------------------------------------------------------------ 2025-09-08T23:03:58,210 ... 2025-09-08T23:03:58,211 for n in range(self.ncart): 2025-09-08T23:03:58,211 i = self.cart[n, 0] 2025-09-08T23:03:58,211 j = self.cart[n, 1] 2025-09-08T23:03:58,211 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,211 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,211 ^ 2025-09-08T23:03:58,211 ------------------------------------------------------------ 2025-09-08T23:03:58,211 sella/internal/int_classes.pyx:314:23: Converting to Python object not allowed without gil 2025-09-08T23:03:58,211 Error compiling Cython file: 2025-09-08T23:03:58,211 ------------------------------------------------------------ 2025-09-08T23:03:58,212 ... 2025-09-08T23:03:58,212 for n in range(self.ncart): 2025-09-08T23:03:58,212 i = self.cart[n, 0] 2025-09-08T23:03:58,212 j = self.cart[n, 1] 2025-09-08T23:03:58,212 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,212 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,212 ^ 2025-09-08T23:03:58,212 ------------------------------------------------------------ 2025-09-08T23:03:58,212 sella/internal/int_classes.pyx:314:26: Converting to Python object not allowed without gil 2025-09-08T23:03:58,213 Error compiling Cython file: 2025-09-08T23:03:58,213 ------------------------------------------------------------ 2025-09-08T23:03:58,213 ... 2025-09-08T23:03:58,213 j = self.cart[n, 1] 2025-09-08T23:03:58,213 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,213 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,213 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,213 m = self.ncart 2025-09-08T23:03:58,213 ^ 2025-09-08T23:03:58,213 ------------------------------------------------------------ 2025-09-08T23:03:58,214 sella/internal/int_classes.pyx:317:16: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,214 Error compiling Cython file: 2025-09-08T23:03:58,214 ------------------------------------------------------------ 2025-09-08T23:03:58,214 ... 2025-09-08T23:03:58,214 j = self.cart[n, 1] 2025-09-08T23:03:58,214 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,214 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,214 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,214 m = self.ncart 2025-09-08T23:03:58,214 ^ 2025-09-08T23:03:58,214 ------------------------------------------------------------ 2025-09-08T23:03:58,215 sella/internal/int_classes.pyx:317:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,215 Error compiling Cython file: 2025-09-08T23:03:58,215 ------------------------------------------------------------ 2025-09-08T23:03:58,215 ... 2025-09-08T23:03:58,215 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,215 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,215 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,215 m = self.ncart 2025-09-08T23:03:58,215 for n in range(self.nbonds): 2025-09-08T23:03:58,216 ^ 2025-09-08T23:03:58,216 ------------------------------------------------------------ 2025-09-08T23:03:58,216 sella/internal/int_classes.pyx:318:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,216 Error compiling Cython file: 2025-09-08T23:03:58,216 ------------------------------------------------------------ 2025-09-08T23:03:58,216 ... 2025-09-08T23:03:58,216 self.q1[n] = self.pos[i, j] 2025-09-08T23:03:58,216 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,216 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,216 m = self.ncart 2025-09-08T23:03:58,217 for n in range(self.nbonds): 2025-09-08T23:03:58,217 ^ 2025-09-08T23:03:58,217 ------------------------------------------------------------ 2025-09-08T23:03:58,217 sella/internal/int_classes.pyx:318:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,217 Error compiling Cython file: 2025-09-08T23:03:58,217 ------------------------------------------------------------ 2025-09-08T23:03:58,217 ... 2025-09-08T23:03:58,217 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,217 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,218 m = self.ncart 2025-09-08T23:03:58,218 for n in range(self.nbonds): 2025-09-08T23:03:58,218 i = self.bonds[n, 0] 2025-09-08T23:03:58,218 ^ 2025-09-08T23:03:58,218 ------------------------------------------------------------ 2025-09-08T23:03:58,218 sella/internal/int_classes.pyx:319:26: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,218 Error compiling Cython file: 2025-09-08T23:03:58,218 ------------------------------------------------------------ 2025-09-08T23:03:58,218 ... 2025-09-08T23:03:58,218 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,219 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,219 m = self.ncart 2025-09-08T23:03:58,219 for n in range(self.nbonds): 2025-09-08T23:03:58,219 i = self.bonds[n, 0] 2025-09-08T23:03:58,219 ^ 2025-09-08T23:03:58,219 ------------------------------------------------------------ 2025-09-08T23:03:58,219 sella/internal/int_classes.pyx:319:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,219 Error compiling Cython file: 2025-09-08T23:03:58,219 ------------------------------------------------------------ 2025-09-08T23:03:58,219 ... 2025-09-08T23:03:58,220 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,220 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,220 m = self.ncart 2025-09-08T23:03:58,220 for n in range(self.nbonds): 2025-09-08T23:03:58,220 i = self.bonds[n, 0] 2025-09-08T23:03:58,220 ^ 2025-09-08T23:03:58,220 ------------------------------------------------------------ 2025-09-08T23:03:58,220 sella/internal/int_classes.pyx:319:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,220 Error compiling Cython file: 2025-09-08T23:03:58,221 ------------------------------------------------------------ 2025-09-08T23:03:58,221 ... 2025-09-08T23:03:58,221 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,221 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,221 m = self.ncart 2025-09-08T23:03:58,221 for n in range(self.nbonds): 2025-09-08T23:03:58,221 i = self.bonds[n, 0] 2025-09-08T23:03:58,221 ^ 2025-09-08T23:03:58,221 ------------------------------------------------------------ 2025-09-08T23:03:58,221 sella/internal/int_classes.pyx:319:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,222 Error compiling Cython file: 2025-09-08T23:03:58,222 ------------------------------------------------------------ 2025-09-08T23:03:58,222 ... 2025-09-08T23:03:58,222 self.dq[n, i, j] = 1. 2025-09-08T23:03:58,222 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,222 m = self.ncart 2025-09-08T23:03:58,222 for n in range(self.nbonds): 2025-09-08T23:03:58,222 i = self.bonds[n, 0] 2025-09-08T23:03:58,222 ^ 2025-09-08T23:03:58,222 ------------------------------------------------------------ 2025-09-08T23:03:58,223 sella/internal/int_classes.pyx:319:27: Converting to Python object not allowed without gil 2025-09-08T23:03:58,223 Error compiling Cython file: 2025-09-08T23:03:58,223 ------------------------------------------------------------ 2025-09-08T23:03:58,223 ... 2025-09-08T23:03:58,223 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,223 m = self.ncart 2025-09-08T23:03:58,223 for n in range(self.nbonds): 2025-09-08T23:03:58,223 i = self.bonds[n, 0] 2025-09-08T23:03:58,223 j = self.bonds[n, 1] 2025-09-08T23:03:58,223 ^ 2025-09-08T23:03:58,223 ------------------------------------------------------------ 2025-09-08T23:03:58,224 sella/internal/int_classes.pyx:320:26: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,224 Error compiling Cython file: 2025-09-08T23:03:58,224 ------------------------------------------------------------ 2025-09-08T23:03:58,224 ... 2025-09-08T23:03:58,224 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,224 m = self.ncart 2025-09-08T23:03:58,224 for n in range(self.nbonds): 2025-09-08T23:03:58,225 i = self.bonds[n, 0] 2025-09-08T23:03:58,225 j = self.bonds[n, 1] 2025-09-08T23:03:58,225 ^ 2025-09-08T23:03:58,225 ------------------------------------------------------------ 2025-09-08T23:03:58,225 sella/internal/int_classes.pyx:320:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,225 Error compiling Cython file: 2025-09-08T23:03:58,225 ------------------------------------------------------------ 2025-09-08T23:03:58,225 ... 2025-09-08T23:03:58,225 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,225 m = self.ncart 2025-09-08T23:03:58,226 for n in range(self.nbonds): 2025-09-08T23:03:58,226 i = self.bonds[n, 0] 2025-09-08T23:03:58,226 j = self.bonds[n, 1] 2025-09-08T23:03:58,226 ^ 2025-09-08T23:03:58,226 ------------------------------------------------------------ 2025-09-08T23:03:58,226 sella/internal/int_classes.pyx:320:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,226 Error compiling Cython file: 2025-09-08T23:03:58,226 ------------------------------------------------------------ 2025-09-08T23:03:58,226 ... 2025-09-08T23:03:58,226 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,227 m = self.ncart 2025-09-08T23:03:58,227 for n in range(self.nbonds): 2025-09-08T23:03:58,227 i = self.bonds[n, 0] 2025-09-08T23:03:58,227 j = self.bonds[n, 1] 2025-09-08T23:03:58,227 ^ 2025-09-08T23:03:58,227 ------------------------------------------------------------ 2025-09-08T23:03:58,227 sella/internal/int_classes.pyx:320:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,227 Error compiling Cython file: 2025-09-08T23:03:58,227 ------------------------------------------------------------ 2025-09-08T23:03:58,227 ... 2025-09-08T23:03:58,228 # d2q is the 0 matrix for cartesian coords 2025-09-08T23:03:58,228 m = self.ncart 2025-09-08T23:03:58,228 for n in range(self.nbonds): 2025-09-08T23:03:58,228 i = self.bonds[n, 0] 2025-09-08T23:03:58,228 j = self.bonds[n, 1] 2025-09-08T23:03:58,228 ^ 2025-09-08T23:03:58,228 ------------------------------------------------------------ 2025-09-08T23:03:58,228 sella/internal/int_classes.pyx:320:27: Converting to Python object not allowed without gil 2025-09-08T23:03:58,228 Error compiling Cython file: 2025-09-08T23:03:58,229 ------------------------------------------------------------ 2025-09-08T23:03:58,229 ... 2025-09-08T23:03:58,229 m = self.ncart 2025-09-08T23:03:58,229 for n in range(self.nbonds): 2025-09-08T23:03:58,229 i = self.bonds[n, 0] 2025-09-08T23:03:58,229 j = self.bonds[n, 1] 2025-09-08T23:03:58,229 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,229 ^ 2025-09-08T23:03:58,229 ------------------------------------------------------------ 2025-09-08T23:03:58,229 sella/internal/int_classes.pyx:321:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,230 Error compiling Cython file: 2025-09-08T23:03:58,230 ------------------------------------------------------------ 2025-09-08T23:03:58,230 ... 2025-09-08T23:03:58,230 m = self.ncart 2025-09-08T23:03:58,230 for n in range(self.nbonds): 2025-09-08T23:03:58,230 i = self.bonds[n, 0] 2025-09-08T23:03:58,230 j = self.bonds[n, 1] 2025-09-08T23:03:58,230 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,230 ^ 2025-09-08T23:03:58,230 ------------------------------------------------------------ 2025-09-08T23:03:58,231 sella/internal/int_classes.pyx:321:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,231 Error compiling Cython file: 2025-09-08T23:03:58,231 ------------------------------------------------------------ 2025-09-08T23:03:58,231 ... 2025-09-08T23:03:58,231 m = self.ncart 2025-09-08T23:03:58,231 for n in range(self.nbonds): 2025-09-08T23:03:58,231 i = self.bonds[n, 0] 2025-09-08T23:03:58,231 j = self.bonds[n, 1] 2025-09-08T23:03:58,231 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,231 ^ 2025-09-08T23:03:58,232 ------------------------------------------------------------ 2025-09-08T23:03:58,232 sella/internal/int_classes.pyx:321:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,232 Error compiling Cython file: 2025-09-08T23:03:58,232 ------------------------------------------------------------ 2025-09-08T23:03:58,232 ... 2025-09-08T23:03:58,232 m = self.ncart 2025-09-08T23:03:58,232 for n in range(self.nbonds): 2025-09-08T23:03:58,232 i = self.bonds[n, 0] 2025-09-08T23:03:58,232 j = self.bonds[n, 1] 2025-09-08T23:03:58,233 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,233 ^ 2025-09-08T23:03:58,233 ------------------------------------------------------------ 2025-09-08T23:03:58,233 sella/internal/int_classes.pyx:321:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,233 Error compiling Cython file: 2025-09-08T23:03:58,233 ------------------------------------------------------------ 2025-09-08T23:03:58,233 ... 2025-09-08T23:03:58,233 m = self.ncart 2025-09-08T23:03:58,233 for n in range(self.nbonds): 2025-09-08T23:03:58,233 i = self.bonds[n, 0] 2025-09-08T23:03:58,234 j = self.bonds[n, 1] 2025-09-08T23:03:58,234 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,234 ^ 2025-09-08T23:03:58,234 ------------------------------------------------------------ 2025-09-08T23:03:58,234 sella/internal/int_classes.pyx:321:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,234 Error compiling Cython file: 2025-09-08T23:03:58,234 ------------------------------------------------------------ 2025-09-08T23:03:58,234 ... 2025-09-08T23:03:58,234 m = self.ncart 2025-09-08T23:03:58,235 for n in range(self.nbonds): 2025-09-08T23:03:58,235 i = self.bonds[n, 0] 2025-09-08T23:03:58,235 j = self.bonds[n, 1] 2025-09-08T23:03:58,235 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,235 ^ 2025-09-08T23:03:58,235 ------------------------------------------------------------ 2025-09-08T23:03:58,235 sella/internal/int_classes.pyx:321:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,235 Error compiling Cython file: 2025-09-08T23:03:58,235 ------------------------------------------------------------ 2025-09-08T23:03:58,235 ... 2025-09-08T23:03:58,236 m = self.ncart 2025-09-08T23:03:58,236 for n in range(self.nbonds): 2025-09-08T23:03:58,236 i = self.bonds[n, 0] 2025-09-08T23:03:58,236 j = self.bonds[n, 1] 2025-09-08T23:03:58,236 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,236 ^ 2025-09-08T23:03:58,236 ------------------------------------------------------------ 2025-09-08T23:03:58,236 sella/internal/int_classes.pyx:321:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,236 Error compiling Cython file: 2025-09-08T23:03:58,236 ------------------------------------------------------------ 2025-09-08T23:03:58,237 ... 2025-09-08T23:03:58,237 m = self.ncart 2025-09-08T23:03:58,237 for n in range(self.nbonds): 2025-09-08T23:03:58,237 i = self.bonds[n, 0] 2025-09-08T23:03:58,237 j = self.bonds[n, 1] 2025-09-08T23:03:58,237 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,237 ^ 2025-09-08T23:03:58,237 ------------------------------------------------------------ 2025-09-08T23:03:58,237 sella/internal/int_classes.pyx:321:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,238 Error compiling Cython file: 2025-09-08T23:03:58,238 ------------------------------------------------------------ 2025-09-08T23:03:58,238 ... 2025-09-08T23:03:58,238 m = self.ncart 2025-09-08T23:03:58,238 for n in range(self.nbonds): 2025-09-08T23:03:58,238 i = self.bonds[n, 0] 2025-09-08T23:03:58,238 j = self.bonds[n, 1] 2025-09-08T23:03:58,238 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,238 ^ 2025-09-08T23:03:58,238 ------------------------------------------------------------ 2025-09-08T23:03:58,238 sella/internal/int_classes.pyx:321:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,239 Error compiling Cython file: 2025-09-08T23:03:58,239 ------------------------------------------------------------ 2025-09-08T23:03:58,239 ... 2025-09-08T23:03:58,239 for n in range(self.nbonds): 2025-09-08T23:03:58,239 i = self.bonds[n, 0] 2025-09-08T23:03:58,239 j = self.bonds[n, 1] 2025-09-08T23:03:58,239 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,239 if err != 0: return err 2025-09-08T23:03:58,239 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,239 ^ 2025-09-08T23:03:58,239 ------------------------------------------------------------ 2025-09-08T23:03:58,240 sella/internal/int_classes.pyx:323:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,240 Error compiling Cython file: 2025-09-08T23:03:58,240 ------------------------------------------------------------ 2025-09-08T23:03:58,240 ... 2025-09-08T23:03:58,240 for n in range(self.nbonds): 2025-09-08T23:03:58,240 i = self.bonds[n, 0] 2025-09-08T23:03:58,240 j = self.bonds[n, 1] 2025-09-08T23:03:58,240 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,240 if err != 0: return err 2025-09-08T23:03:58,240 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,241 ^ 2025-09-08T23:03:58,241 ------------------------------------------------------------ 2025-09-08T23:03:58,241 sella/internal/int_classes.pyx:323:31: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,241 Error compiling Cython file: 2025-09-08T23:03:58,241 ------------------------------------------------------------ 2025-09-08T23:03:58,241 ... 2025-09-08T23:03:58,241 for n in range(self.nbonds): 2025-09-08T23:03:58,241 i = self.bonds[n, 0] 2025-09-08T23:03:58,241 j = self.bonds[n, 1] 2025-09-08T23:03:58,241 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,241 if err != 0: return err 2025-09-08T23:03:58,242 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,242 ^ 2025-09-08T23:03:58,242 ------------------------------------------------------------ 2025-09-08T23:03:58,242 sella/internal/int_classes.pyx:323:19: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,242 Error compiling Cython file: 2025-09-08T23:03:58,242 ------------------------------------------------------------ 2025-09-08T23:03:58,242 ... 2025-09-08T23:03:58,242 for n in range(self.nbonds): 2025-09-08T23:03:58,242 i = self.bonds[n, 0] 2025-09-08T23:03:58,242 j = self.bonds[n, 1] 2025-09-08T23:03:58,243 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,243 if err != 0: return err 2025-09-08T23:03:58,243 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,243 ^ 2025-09-08T23:03:58,243 ------------------------------------------------------------ 2025-09-08T23:03:58,243 sella/internal/int_classes.pyx:323:31: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,243 Error compiling Cython file: 2025-09-08T23:03:58,243 ------------------------------------------------------------ 2025-09-08T23:03:58,243 ... 2025-09-08T23:03:58,244 for n in range(self.nbonds): 2025-09-08T23:03:58,244 i = self.bonds[n, 0] 2025-09-08T23:03:58,244 j = self.bonds[n, 1] 2025-09-08T23:03:58,244 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,244 if err != 0: return err 2025-09-08T23:03:58,244 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,244 ^ 2025-09-08T23:03:58,244 ------------------------------------------------------------ 2025-09-08T23:03:58,244 sella/internal/int_classes.pyx:323:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,244 Error compiling Cython file: 2025-09-08T23:03:58,245 ------------------------------------------------------------ 2025-09-08T23:03:58,245 ... 2025-09-08T23:03:58,245 for n in range(self.nbonds): 2025-09-08T23:03:58,245 i = self.bonds[n, 0] 2025-09-08T23:03:58,245 j = self.bonds[n, 1] 2025-09-08T23:03:58,245 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,245 if err != 0: return err 2025-09-08T23:03:58,245 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,245 ^ 2025-09-08T23:03:58,245 ------------------------------------------------------------ 2025-09-08T23:03:58,245 sella/internal/int_classes.pyx:323:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,246 Error compiling Cython file: 2025-09-08T23:03:58,246 ------------------------------------------------------------ 2025-09-08T23:03:58,246 ... 2025-09-08T23:03:58,246 for n in range(self.nbonds): 2025-09-08T23:03:58,246 i = self.bonds[n, 0] 2025-09-08T23:03:58,246 j = self.bonds[n, 1] 2025-09-08T23:03:58,246 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,246 if err != 0: return err 2025-09-08T23:03:58,246 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,246 ^ 2025-09-08T23:03:58,246 ------------------------------------------------------------ 2025-09-08T23:03:58,247 sella/internal/int_classes.pyx:323:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,247 Error compiling Cython file: 2025-09-08T23:03:58,247 ------------------------------------------------------------ 2025-09-08T23:03:58,247 ... 2025-09-08T23:03:58,247 for n in range(self.nbonds): 2025-09-08T23:03:58,247 i = self.bonds[n, 0] 2025-09-08T23:03:58,247 j = self.bonds[n, 1] 2025-09-08T23:03:58,247 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,247 if err != 0: return err 2025-09-08T23:03:58,247 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,247 ^ 2025-09-08T23:03:58,248 ------------------------------------------------------------ 2025-09-08T23:03:58,248 sella/internal/int_classes.pyx:323:48: Converting to Python object not allowed without gil 2025-09-08T23:03:58,248 Error compiling Cython file: 2025-09-08T23:03:58,248 ------------------------------------------------------------ 2025-09-08T23:03:58,248 ... 2025-09-08T23:03:58,248 for n in range(self.nbonds): 2025-09-08T23:03:58,248 i = self.bonds[n, 0] 2025-09-08T23:03:58,248 j = self.bonds[n, 1] 2025-09-08T23:03:58,248 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,248 if err != 0: return err 2025-09-08T23:03:58,249 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,249 ^ 2025-09-08T23:03:58,249 ------------------------------------------------------------ 2025-09-08T23:03:58,249 sella/internal/int_classes.pyx:323:56: Indexing Python object not allowed without gil 2025-09-08T23:03:58,249 Error compiling Cython file: 2025-09-08T23:03:58,249 ------------------------------------------------------------ 2025-09-08T23:03:58,249 ... 2025-09-08T23:03:58,249 for n in range(self.nbonds): 2025-09-08T23:03:58,249 i = self.bonds[n, 0] 2025-09-08T23:03:58,249 j = self.bonds[n, 1] 2025-09-08T23:03:58,249 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,250 if err != 0: return err 2025-09-08T23:03:58,250 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,250 ^ 2025-09-08T23:03:58,250 ------------------------------------------------------------ 2025-09-08T23:03:58,250 sella/internal/int_classes.pyx:323:53: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,250 Error compiling Cython file: 2025-09-08T23:03:58,250 ------------------------------------------------------------ 2025-09-08T23:03:58,250 ... 2025-09-08T23:03:58,250 i = self.bonds[n, 0] 2025-09-08T23:03:58,250 j = self.bonds[n, 1] 2025-09-08T23:03:58,251 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,251 if err != 0: return err 2025-09-08T23:03:58,251 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,251 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,251 ^ 2025-09-08T23:03:58,251 ------------------------------------------------------------ 2025-09-08T23:03:58,251 sella/internal/int_classes.pyx:324:39: Indexing Python object not allowed without gil 2025-09-08T23:03:58,251 Error compiling Cython file: 2025-09-08T23:03:58,251 ------------------------------------------------------------ 2025-09-08T23:03:58,251 ... 2025-09-08T23:03:58,251 i = self.bonds[n, 0] 2025-09-08T23:03:58,252 j = self.bonds[n, 1] 2025-09-08T23:03:58,252 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,252 if err != 0: return err 2025-09-08T23:03:58,252 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,252 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,252 ^ 2025-09-08T23:03:58,252 ------------------------------------------------------------ 2025-09-08T23:03:58,252 sella/internal/int_classes.pyx:324:36: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,252 Error compiling Cython file: 2025-09-08T23:03:58,252 ------------------------------------------------------------ 2025-09-08T23:03:58,253 ... 2025-09-08T23:03:58,253 i = self.bonds[n, 0] 2025-09-08T23:03:58,253 j = self.bonds[n, 1] 2025-09-08T23:03:58,253 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,253 if err != 0: return err 2025-09-08T23:03:58,253 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,253 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,253 ^ 2025-09-08T23:03:58,253 ------------------------------------------------------------ 2025-09-08T23:03:58,253 sella/internal/int_classes.pyx:324:62: Indexing Python object not allowed without gil 2025-09-08T23:03:58,254 Error compiling Cython file: 2025-09-08T23:03:58,254 ------------------------------------------------------------ 2025-09-08T23:03:58,254 ... 2025-09-08T23:03:58,254 i = self.bonds[n, 0] 2025-09-08T23:03:58,254 j = self.bonds[n, 1] 2025-09-08T23:03:58,254 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,254 if err != 0: return err 2025-09-08T23:03:58,254 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,254 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,254 ^ 2025-09-08T23:03:58,254 ------------------------------------------------------------ 2025-09-08T23:03:58,254 sella/internal/int_classes.pyx:324:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,255 Error compiling Cython file: 2025-09-08T23:03:58,255 ------------------------------------------------------------ 2025-09-08T23:03:58,255 ... 2025-09-08T23:03:58,255 i = self.bonds[n, 0] 2025-09-08T23:03:58,255 j = self.bonds[n, 1] 2025-09-08T23:03:58,255 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,255 if err != 0: return err 2025-09-08T23:03:58,255 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,255 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,255 ^ 2025-09-08T23:03:58,255 ------------------------------------------------------------ 2025-09-08T23:03:58,256 sella/internal/int_classes.pyx:324:67: Converting to Python object not allowed without gil 2025-09-08T23:03:58,256 Error compiling Cython file: 2025-09-08T23:03:58,256 ------------------------------------------------------------ 2025-09-08T23:03:58,256 ... 2025-09-08T23:03:58,256 i = self.bonds[n, 0] 2025-09-08T23:03:58,256 j = self.bonds[n, 1] 2025-09-08T23:03:58,256 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,256 if err != 0: return err 2025-09-08T23:03:58,256 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,256 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,257 ^ 2025-09-08T23:03:58,257 ------------------------------------------------------------ 2025-09-08T23:03:58,257 sella/internal/int_classes.pyx:324:73: Converting to Python object not allowed without gil 2025-09-08T23:03:58,257 Error compiling Cython file: 2025-09-08T23:03:58,257 ------------------------------------------------------------ 2025-09-08T23:03:58,257 ... 2025-09-08T23:03:58,257 if err != 0: return err 2025-09-08T23:03:58,257 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,257 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,257 if info < 0: return info 2025-09-08T23:03:58,258 m += self.nbonds 2025-09-08T23:03:58,258 ^ 2025-09-08T23:03:58,258 ------------------------------------------------------------ 2025-09-08T23:03:58,258 sella/internal/int_classes.pyx:327:8: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,258 Error compiling Cython file: 2025-09-08T23:03:58,258 ------------------------------------------------------------ 2025-09-08T23:03:58,258 ... 2025-09-08T23:03:58,258 if err != 0: return err 2025-09-08T23:03:58,258 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,258 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,259 if info < 0: return info 2025-09-08T23:03:58,259 m += self.nbonds 2025-09-08T23:03:58,259 ^ 2025-09-08T23:03:58,259 ------------------------------------------------------------ 2025-09-08T23:03:58,259 sella/internal/int_classes.pyx:327:8: Operation not allowed without gil 2025-09-08T23:03:58,259 Error compiling Cython file: 2025-09-08T23:03:58,259 ------------------------------------------------------------ 2025-09-08T23:03:58,259 ... 2025-09-08T23:03:58,260 if err != 0: return err 2025-09-08T23:03:58,260 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,260 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,260 if info < 0: return info 2025-09-08T23:03:58,260 m += self.nbonds 2025-09-08T23:03:58,260 ^ 2025-09-08T23:03:58,260 ------------------------------------------------------------ 2025-09-08T23:03:58,260 sella/internal/int_classes.pyx:327:8: Converting to Python object not allowed without gil 2025-09-08T23:03:58,260 Error compiling Cython file: 2025-09-08T23:03:58,261 ------------------------------------------------------------ 2025-09-08T23:03:58,261 ... 2025-09-08T23:03:58,261 if err != 0: return err 2025-09-08T23:03:58,261 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,261 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,261 if info < 0: return info 2025-09-08T23:03:58,261 m += self.nbonds 2025-09-08T23:03:58,261 ^ 2025-09-08T23:03:58,261 ------------------------------------------------------------ 2025-09-08T23:03:58,261 sella/internal/int_classes.pyx:327:17: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,262 Error compiling Cython file: 2025-09-08T23:03:58,262 ------------------------------------------------------------ 2025-09-08T23:03:58,262 ... 2025-09-08T23:03:58,262 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,262 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,262 if info < 0: return info 2025-09-08T23:03:58,262 m += self.nbonds 2025-09-08T23:03:58,262 for n in range(self.nangles): 2025-09-08T23:03:58,262 ^ 2025-09-08T23:03:58,262 ------------------------------------------------------------ 2025-09-08T23:03:58,263 sella/internal/int_classes.pyx:328:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,263 Error compiling Cython file: 2025-09-08T23:03:58,263 ------------------------------------------------------------ 2025-09-08T23:03:58,263 ... 2025-09-08T23:03:58,263 info = cart_to_bond(i, j, self.dx1, &self.q1[m + n], 2025-09-08T23:03:58,263 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,263 if info < 0: return info 2025-09-08T23:03:58,263 m += self.nbonds 2025-09-08T23:03:58,263 for n in range(self.nangles): 2025-09-08T23:03:58,263 ^ 2025-09-08T23:03:58,264 ------------------------------------------------------------ 2025-09-08T23:03:58,264 sella/internal/int_classes.pyx:328:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,264 Error compiling Cython file: 2025-09-08T23:03:58,264 ------------------------------------------------------------ 2025-09-08T23:03:58,264 ... 2025-09-08T23:03:58,264 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,264 if info < 0: return info 2025-09-08T23:03:58,264 m += self.nbonds 2025-09-08T23:03:58,264 for n in range(self.nangles): 2025-09-08T23:03:58,265 i = self.angles[n, 0] 2025-09-08T23:03:58,265 ^ 2025-09-08T23:03:58,265 ------------------------------------------------------------ 2025-09-08T23:03:58,265 sella/internal/int_classes.pyx:329:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,265 Error compiling Cython file: 2025-09-08T23:03:58,265 ------------------------------------------------------------ 2025-09-08T23:03:58,265 ... 2025-09-08T23:03:58,265 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,265 if info < 0: return info 2025-09-08T23:03:58,266 m += self.nbonds 2025-09-08T23:03:58,266 for n in range(self.nangles): 2025-09-08T23:03:58,266 i = self.angles[n, 0] 2025-09-08T23:03:58,266 ^ 2025-09-08T23:03:58,266 ------------------------------------------------------------ 2025-09-08T23:03:58,266 sella/internal/int_classes.pyx:329:27: Indexing Python object not allowed without gil 2025-09-08T23:03:58,266 Error compiling Cython file: 2025-09-08T23:03:58,266 ------------------------------------------------------------ 2025-09-08T23:03:58,266 ... 2025-09-08T23:03:58,266 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,266 if info < 0: return info 2025-09-08T23:03:58,267 m += self.nbonds 2025-09-08T23:03:58,267 for n in range(self.nangles): 2025-09-08T23:03:58,267 i = self.angles[n, 0] 2025-09-08T23:03:58,267 ^ 2025-09-08T23:03:58,267 ------------------------------------------------------------ 2025-09-08T23:03:58,267 sella/internal/int_classes.pyx:329:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,267 Error compiling Cython file: 2025-09-08T23:03:58,267 ------------------------------------------------------------ 2025-09-08T23:03:58,267 ... 2025-09-08T23:03:58,268 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,268 if info < 0: return info 2025-09-08T23:03:58,268 m += self.nbonds 2025-09-08T23:03:58,268 for n in range(self.nangles): 2025-09-08T23:03:58,268 i = self.angles[n, 0] 2025-09-08T23:03:58,268 ^ 2025-09-08T23:03:58,268 ------------------------------------------------------------ 2025-09-08T23:03:58,268 sella/internal/int_classes.pyx:329:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,268 Error compiling Cython file: 2025-09-08T23:03:58,268 ------------------------------------------------------------ 2025-09-08T23:03:58,269 ... 2025-09-08T23:03:58,269 self.dq[m + n], self.d2q_bonds[n], grad, curv) 2025-09-08T23:03:58,269 if info < 0: return info 2025-09-08T23:03:58,269 m += self.nbonds 2025-09-08T23:03:58,269 for n in range(self.nangles): 2025-09-08T23:03:58,269 i = self.angles[n, 0] 2025-09-08T23:03:58,269 ^ 2025-09-08T23:03:58,269 ------------------------------------------------------------ 2025-09-08T23:03:58,269 sella/internal/int_classes.pyx:329:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,270 Error compiling Cython file: 2025-09-08T23:03:58,270 ------------------------------------------------------------ 2025-09-08T23:03:58,270 ... 2025-09-08T23:03:58,270 if info < 0: return info 2025-09-08T23:03:58,270 m += self.nbonds 2025-09-08T23:03:58,270 for n in range(self.nangles): 2025-09-08T23:03:58,270 i = self.angles[n, 0] 2025-09-08T23:03:58,270 j = self.angles[n, 1] 2025-09-08T23:03:58,270 ^ 2025-09-08T23:03:58,270 ------------------------------------------------------------ 2025-09-08T23:03:58,270 sella/internal/int_classes.pyx:330:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,271 Error compiling Cython file: 2025-09-08T23:03:58,271 ------------------------------------------------------------ 2025-09-08T23:03:58,271 ... 2025-09-08T23:03:58,271 if info < 0: return info 2025-09-08T23:03:58,271 m += self.nbonds 2025-09-08T23:03:58,271 for n in range(self.nangles): 2025-09-08T23:03:58,271 i = self.angles[n, 0] 2025-09-08T23:03:58,271 j = self.angles[n, 1] 2025-09-08T23:03:58,271 ^ 2025-09-08T23:03:58,271 ------------------------------------------------------------ 2025-09-08T23:03:58,272 sella/internal/int_classes.pyx:330:27: Indexing Python object not allowed without gil 2025-09-08T23:03:58,272 Error compiling Cython file: 2025-09-08T23:03:58,272 ------------------------------------------------------------ 2025-09-08T23:03:58,272 ... 2025-09-08T23:03:58,272 if info < 0: return info 2025-09-08T23:03:58,272 m += self.nbonds 2025-09-08T23:03:58,272 for n in range(self.nangles): 2025-09-08T23:03:58,272 i = self.angles[n, 0] 2025-09-08T23:03:58,272 j = self.angles[n, 1] 2025-09-08T23:03:58,273 ^ 2025-09-08T23:03:58,273 ------------------------------------------------------------ 2025-09-08T23:03:58,273 sella/internal/int_classes.pyx:330:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,273 Error compiling Cython file: 2025-09-08T23:03:58,273 ------------------------------------------------------------ 2025-09-08T23:03:58,273 ... 2025-09-08T23:03:58,273 if info < 0: return info 2025-09-08T23:03:58,273 m += self.nbonds 2025-09-08T23:03:58,273 for n in range(self.nangles): 2025-09-08T23:03:58,274 i = self.angles[n, 0] 2025-09-08T23:03:58,274 j = self.angles[n, 1] 2025-09-08T23:03:58,274 ^ 2025-09-08T23:03:58,274 ------------------------------------------------------------ 2025-09-08T23:03:58,274 sella/internal/int_classes.pyx:330:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,274 Error compiling Cython file: 2025-09-08T23:03:58,274 ------------------------------------------------------------ 2025-09-08T23:03:58,274 ... 2025-09-08T23:03:58,274 if info < 0: return info 2025-09-08T23:03:58,275 m += self.nbonds 2025-09-08T23:03:58,275 for n in range(self.nangles): 2025-09-08T23:03:58,275 i = self.angles[n, 0] 2025-09-08T23:03:58,275 j = self.angles[n, 1] 2025-09-08T23:03:58,275 ^ 2025-09-08T23:03:58,275 ------------------------------------------------------------ 2025-09-08T23:03:58,275 sella/internal/int_classes.pyx:330:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,275 Error compiling Cython file: 2025-09-08T23:03:58,275 ------------------------------------------------------------ 2025-09-08T23:03:58,275 ... 2025-09-08T23:03:58,276 m += self.nbonds 2025-09-08T23:03:58,276 for n in range(self.nangles): 2025-09-08T23:03:58,276 i = self.angles[n, 0] 2025-09-08T23:03:58,276 j = self.angles[n, 1] 2025-09-08T23:03:58,276 k = self.angles[n, 2] 2025-09-08T23:03:58,276 ^ 2025-09-08T23:03:58,276 ------------------------------------------------------------ 2025-09-08T23:03:58,276 sella/internal/int_classes.pyx:331:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,276 Error compiling Cython file: 2025-09-08T23:03:58,276 ------------------------------------------------------------ 2025-09-08T23:03:58,277 ... 2025-09-08T23:03:58,277 m += self.nbonds 2025-09-08T23:03:58,277 for n in range(self.nangles): 2025-09-08T23:03:58,277 i = self.angles[n, 0] 2025-09-08T23:03:58,277 j = self.angles[n, 1] 2025-09-08T23:03:58,277 k = self.angles[n, 2] 2025-09-08T23:03:58,277 ^ 2025-09-08T23:03:58,277 ------------------------------------------------------------ 2025-09-08T23:03:58,277 sella/internal/int_classes.pyx:331:27: Indexing Python object not allowed without gil 2025-09-08T23:03:58,277 Error compiling Cython file: 2025-09-08T23:03:58,278 ------------------------------------------------------------ 2025-09-08T23:03:58,278 ... 2025-09-08T23:03:58,278 m += self.nbonds 2025-09-08T23:03:58,278 for n in range(self.nangles): 2025-09-08T23:03:58,278 i = self.angles[n, 0] 2025-09-08T23:03:58,278 j = self.angles[n, 1] 2025-09-08T23:03:58,278 k = self.angles[n, 2] 2025-09-08T23:03:58,278 ^ 2025-09-08T23:03:58,278 ------------------------------------------------------------ 2025-09-08T23:03:58,278 sella/internal/int_classes.pyx:331:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,279 Error compiling Cython file: 2025-09-08T23:03:58,279 ------------------------------------------------------------ 2025-09-08T23:03:58,279 ... 2025-09-08T23:03:58,279 m += self.nbonds 2025-09-08T23:03:58,279 for n in range(self.nangles): 2025-09-08T23:03:58,279 i = self.angles[n, 0] 2025-09-08T23:03:58,279 j = self.angles[n, 1] 2025-09-08T23:03:58,279 k = self.angles[n, 2] 2025-09-08T23:03:58,279 ^ 2025-09-08T23:03:58,279 ------------------------------------------------------------ 2025-09-08T23:03:58,280 sella/internal/int_classes.pyx:331:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,280 Error compiling Cython file: 2025-09-08T23:03:58,280 ------------------------------------------------------------ 2025-09-08T23:03:58,280 ... 2025-09-08T23:03:58,280 m += self.nbonds 2025-09-08T23:03:58,280 for n in range(self.nangles): 2025-09-08T23:03:58,280 i = self.angles[n, 0] 2025-09-08T23:03:58,280 j = self.angles[n, 1] 2025-09-08T23:03:58,281 k = self.angles[n, 2] 2025-09-08T23:03:58,281 ^ 2025-09-08T23:03:58,281 ------------------------------------------------------------ 2025-09-08T23:03:58,281 sella/internal/int_classes.pyx:331:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,281 Error compiling Cython file: 2025-09-08T23:03:58,281 ------------------------------------------------------------ 2025-09-08T23:03:58,281 ... 2025-09-08T23:03:58,281 m += self.nbonds 2025-09-08T23:03:58,281 for n in range(self.nangles): 2025-09-08T23:03:58,281 i = self.angles[n, 0] 2025-09-08T23:03:58,281 j = self.angles[n, 1] 2025-09-08T23:03:58,282 k = self.angles[n, 2] 2025-09-08T23:03:58,282 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,282 ^ 2025-09-08T23:03:58,282 ------------------------------------------------------------ 2025-09-08T23:03:58,282 sella/internal/int_classes.pyx:332:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,282 Error compiling Cython file: 2025-09-08T23:03:58,282 ------------------------------------------------------------ 2025-09-08T23:03:58,282 ... 2025-09-08T23:03:58,282 m += self.nbonds 2025-09-08T23:03:58,282 for n in range(self.nangles): 2025-09-08T23:03:58,283 i = self.angles[n, 0] 2025-09-08T23:03:58,283 j = self.angles[n, 1] 2025-09-08T23:03:58,283 k = self.angles[n, 2] 2025-09-08T23:03:58,283 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,283 ^ 2025-09-08T23:03:58,283 ------------------------------------------------------------ 2025-09-08T23:03:58,283 sella/internal/int_classes.pyx:332:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,283 Error compiling Cython file: 2025-09-08T23:03:58,283 ------------------------------------------------------------ 2025-09-08T23:03:58,283 ... 2025-09-08T23:03:58,284 m += self.nbonds 2025-09-08T23:03:58,284 for n in range(self.nangles): 2025-09-08T23:03:58,284 i = self.angles[n, 0] 2025-09-08T23:03:58,284 j = self.angles[n, 1] 2025-09-08T23:03:58,284 k = self.angles[n, 2] 2025-09-08T23:03:58,284 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,284 ^ 2025-09-08T23:03:58,284 ------------------------------------------------------------ 2025-09-08T23:03:58,284 sella/internal/int_classes.pyx:332:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,284 Error compiling Cython file: 2025-09-08T23:03:58,285 ------------------------------------------------------------ 2025-09-08T23:03:58,285 ... 2025-09-08T23:03:58,285 m += self.nbonds 2025-09-08T23:03:58,285 for n in range(self.nangles): 2025-09-08T23:03:58,285 i = self.angles[n, 0] 2025-09-08T23:03:58,285 j = self.angles[n, 1] 2025-09-08T23:03:58,285 k = self.angles[n, 2] 2025-09-08T23:03:58,285 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,285 ^ 2025-09-08T23:03:58,285 ------------------------------------------------------------ 2025-09-08T23:03:58,285 sella/internal/int_classes.pyx:332:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,286 Error compiling Cython file: 2025-09-08T23:03:58,286 ------------------------------------------------------------ 2025-09-08T23:03:58,286 ... 2025-09-08T23:03:58,286 m += self.nbonds 2025-09-08T23:03:58,286 for n in range(self.nangles): 2025-09-08T23:03:58,286 i = self.angles[n, 0] 2025-09-08T23:03:58,286 j = self.angles[n, 1] 2025-09-08T23:03:58,286 k = self.angles[n, 2] 2025-09-08T23:03:58,286 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,286 ^ 2025-09-08T23:03:58,286 ------------------------------------------------------------ 2025-09-08T23:03:58,287 sella/internal/int_classes.pyx:332:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,287 Error compiling Cython file: 2025-09-08T23:03:58,287 ------------------------------------------------------------ 2025-09-08T23:03:58,287 ... 2025-09-08T23:03:58,287 m += self.nbonds 2025-09-08T23:03:58,287 for n in range(self.nangles): 2025-09-08T23:03:58,287 i = self.angles[n, 0] 2025-09-08T23:03:58,287 j = self.angles[n, 1] 2025-09-08T23:03:58,287 k = self.angles[n, 2] 2025-09-08T23:03:58,287 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,287 ^ 2025-09-08T23:03:58,288 ------------------------------------------------------------ 2025-09-08T23:03:58,288 sella/internal/int_classes.pyx:332:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,288 Error compiling Cython file: 2025-09-08T23:03:58,288 ------------------------------------------------------------ 2025-09-08T23:03:58,288 ... 2025-09-08T23:03:58,288 m += self.nbonds 2025-09-08T23:03:58,288 for n in range(self.nangles): 2025-09-08T23:03:58,288 i = self.angles[n, 0] 2025-09-08T23:03:58,288 j = self.angles[n, 1] 2025-09-08T23:03:58,288 k = self.angles[n, 2] 2025-09-08T23:03:58,288 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,289 ^ 2025-09-08T23:03:58,289 ------------------------------------------------------------ 2025-09-08T23:03:58,289 sella/internal/int_classes.pyx:332:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,289 Error compiling Cython file: 2025-09-08T23:03:58,289 ------------------------------------------------------------ 2025-09-08T23:03:58,289 ... 2025-09-08T23:03:58,289 m += self.nbonds 2025-09-08T23:03:58,289 for n in range(self.nangles): 2025-09-08T23:03:58,289 i = self.angles[n, 0] 2025-09-08T23:03:58,289 j = self.angles[n, 1] 2025-09-08T23:03:58,290 k = self.angles[n, 2] 2025-09-08T23:03:58,290 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,290 ^ 2025-09-08T23:03:58,290 ------------------------------------------------------------ 2025-09-08T23:03:58,290 sella/internal/int_classes.pyx:332:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,290 Error compiling Cython file: 2025-09-08T23:03:58,290 ------------------------------------------------------------ 2025-09-08T23:03:58,290 ... 2025-09-08T23:03:58,290 m += self.nbonds 2025-09-08T23:03:58,290 for n in range(self.nangles): 2025-09-08T23:03:58,291 i = self.angles[n, 0] 2025-09-08T23:03:58,291 j = self.angles[n, 1] 2025-09-08T23:03:58,291 k = self.angles[n, 2] 2025-09-08T23:03:58,291 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,291 ^ 2025-09-08T23:03:58,291 ------------------------------------------------------------ 2025-09-08T23:03:58,291 sella/internal/int_classes.pyx:332:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,291 Error compiling Cython file: 2025-09-08T23:03:58,291 ------------------------------------------------------------ 2025-09-08T23:03:58,291 ... 2025-09-08T23:03:58,291 i = self.angles[n, 0] 2025-09-08T23:03:58,292 j = self.angles[n, 1] 2025-09-08T23:03:58,292 k = self.angles[n, 2] 2025-09-08T23:03:58,292 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,292 if err != 0: return err 2025-09-08T23:03:58,292 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,292 ^ 2025-09-08T23:03:58,292 ------------------------------------------------------------ 2025-09-08T23:03:58,292 sella/internal/int_classes.pyx:334:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,292 Error compiling Cython file: 2025-09-08T23:03:58,293 ------------------------------------------------------------ 2025-09-08T23:03:58,293 ... 2025-09-08T23:03:58,293 i = self.angles[n, 0] 2025-09-08T23:03:58,293 j = self.angles[n, 1] 2025-09-08T23:03:58,293 k = self.angles[n, 2] 2025-09-08T23:03:58,293 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,293 if err != 0: return err 2025-09-08T23:03:58,293 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,293 ^ 2025-09-08T23:03:58,293 ------------------------------------------------------------ 2025-09-08T23:03:58,293 sella/internal/int_classes.pyx:334:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,294 Error compiling Cython file: 2025-09-08T23:03:58,294 ------------------------------------------------------------ 2025-09-08T23:03:58,294 ... 2025-09-08T23:03:58,294 i = self.angles[n, 0] 2025-09-08T23:03:58,294 j = self.angles[n, 1] 2025-09-08T23:03:58,294 k = self.angles[n, 2] 2025-09-08T23:03:58,294 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,294 if err != 0: return err 2025-09-08T23:03:58,294 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,294 ^ 2025-09-08T23:03:58,294 ------------------------------------------------------------ 2025-09-08T23:03:58,295 sella/internal/int_classes.pyx:334:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,295 Error compiling Cython file: 2025-09-08T23:03:58,295 ------------------------------------------------------------ 2025-09-08T23:03:58,295 ... 2025-09-08T23:03:58,295 i = self.angles[n, 0] 2025-09-08T23:03:58,295 j = self.angles[n, 1] 2025-09-08T23:03:58,295 k = self.angles[n, 2] 2025-09-08T23:03:58,295 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,295 if err != 0: return err 2025-09-08T23:03:58,295 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,295 ^ 2025-09-08T23:03:58,296 ------------------------------------------------------------ 2025-09-08T23:03:58,296 sella/internal/int_classes.pyx:334:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,296 Error compiling Cython file: 2025-09-08T23:03:58,296 ------------------------------------------------------------ 2025-09-08T23:03:58,296 ... 2025-09-08T23:03:58,296 i = self.angles[n, 0] 2025-09-08T23:03:58,296 j = self.angles[n, 1] 2025-09-08T23:03:58,296 k = self.angles[n, 2] 2025-09-08T23:03:58,296 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,296 if err != 0: return err 2025-09-08T23:03:58,296 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,297 ^ 2025-09-08T23:03:58,297 ------------------------------------------------------------ 2025-09-08T23:03:58,297 sella/internal/int_classes.pyx:334:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,297 Error compiling Cython file: 2025-09-08T23:03:58,297 ------------------------------------------------------------ 2025-09-08T23:03:58,297 ... 2025-09-08T23:03:58,297 i = self.angles[n, 0] 2025-09-08T23:03:58,297 j = self.angles[n, 1] 2025-09-08T23:03:58,297 k = self.angles[n, 2] 2025-09-08T23:03:58,298 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,298 if err != 0: return err 2025-09-08T23:03:58,298 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,298 ^ 2025-09-08T23:03:58,298 ------------------------------------------------------------ 2025-09-08T23:03:58,298 sella/internal/int_classes.pyx:334:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,298 Error compiling Cython file: 2025-09-08T23:03:58,298 ------------------------------------------------------------ 2025-09-08T23:03:58,298 ... 2025-09-08T23:03:58,298 i = self.angles[n, 0] 2025-09-08T23:03:58,299 j = self.angles[n, 1] 2025-09-08T23:03:58,299 k = self.angles[n, 2] 2025-09-08T23:03:58,299 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,299 if err != 0: return err 2025-09-08T23:03:58,299 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,299 ^ 2025-09-08T23:03:58,299 ------------------------------------------------------------ 2025-09-08T23:03:58,299 sella/internal/int_classes.pyx:334:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,299 Error compiling Cython file: 2025-09-08T23:03:58,300 ------------------------------------------------------------ 2025-09-08T23:03:58,300 ... 2025-09-08T23:03:58,300 i = self.angles[n, 0] 2025-09-08T23:03:58,300 j = self.angles[n, 1] 2025-09-08T23:03:58,300 k = self.angles[n, 2] 2025-09-08T23:03:58,300 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,300 if err != 0: return err 2025-09-08T23:03:58,300 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,300 ^ 2025-09-08T23:03:58,300 ------------------------------------------------------------ 2025-09-08T23:03:58,300 sella/internal/int_classes.pyx:334:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,301 Error compiling Cython file: 2025-09-08T23:03:58,301 ------------------------------------------------------------ 2025-09-08T23:03:58,301 ... 2025-09-08T23:03:58,301 i = self.angles[n, 0] 2025-09-08T23:03:58,301 j = self.angles[n, 1] 2025-09-08T23:03:58,301 k = self.angles[n, 2] 2025-09-08T23:03:58,301 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,301 if err != 0: return err 2025-09-08T23:03:58,301 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,301 ^ 2025-09-08T23:03:58,301 ------------------------------------------------------------ 2025-09-08T23:03:58,302 sella/internal/int_classes.pyx:334:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,302 Error compiling Cython file: 2025-09-08T23:03:58,302 ------------------------------------------------------------ 2025-09-08T23:03:58,302 ... 2025-09-08T23:03:58,302 k = self.angles[n, 2] 2025-09-08T23:03:58,302 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,302 if err != 0: return err 2025-09-08T23:03:58,302 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,302 if err != 0: return err 2025-09-08T23:03:58,302 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,302 ^ 2025-09-08T23:03:58,303 ------------------------------------------------------------ 2025-09-08T23:03:58,303 sella/internal/int_classes.pyx:336:32: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,303 Error compiling Cython file: 2025-09-08T23:03:58,303 ------------------------------------------------------------ 2025-09-08T23:03:58,303 ... 2025-09-08T23:03:58,303 k = self.angles[n, 2] 2025-09-08T23:03:58,303 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,303 if err != 0: return err 2025-09-08T23:03:58,303 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,303 if err != 0: return err 2025-09-08T23:03:58,304 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,304 ^ 2025-09-08T23:03:58,304 ------------------------------------------------------------ 2025-09-08T23:03:58,304 sella/internal/int_classes.pyx:336:32: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,304 Error compiling Cython file: 2025-09-08T23:03:58,304 ------------------------------------------------------------ 2025-09-08T23:03:58,304 ... 2025-09-08T23:03:58,304 k = self.angles[n, 2] 2025-09-08T23:03:58,304 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,304 if err != 0: return err 2025-09-08T23:03:58,305 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,305 if err != 0: return err 2025-09-08T23:03:58,305 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,305 ^ 2025-09-08T23:03:58,305 ------------------------------------------------------------ 2025-09-08T23:03:58,305 sella/internal/int_classes.pyx:336:19: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,305 Error compiling Cython file: 2025-09-08T23:03:58,305 ------------------------------------------------------------ 2025-09-08T23:03:58,305 ... 2025-09-08T23:03:58,305 k = self.angles[n, 2] 2025-09-08T23:03:58,305 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,306 if err != 0: return err 2025-09-08T23:03:58,306 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,306 if err != 0: return err 2025-09-08T23:03:58,306 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,306 ^ 2025-09-08T23:03:58,306 ------------------------------------------------------------ 2025-09-08T23:03:58,306 sella/internal/int_classes.pyx:336:32: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,306 Error compiling Cython file: 2025-09-08T23:03:58,306 ------------------------------------------------------------ 2025-09-08T23:03:58,306 ... 2025-09-08T23:03:58,307 k = self.angles[n, 2] 2025-09-08T23:03:58,307 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,307 if err != 0: return err 2025-09-08T23:03:58,307 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,307 if err != 0: return err 2025-09-08T23:03:58,307 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,307 ^ 2025-09-08T23:03:58,307 ------------------------------------------------------------ 2025-09-08T23:03:58,307 sella/internal/int_classes.pyx:336:33: Converting to Python object not allowed without gil 2025-09-08T23:03:58,307 Error compiling Cython file: 2025-09-08T23:03:58,307 ------------------------------------------------------------ 2025-09-08T23:03:58,308 ... 2025-09-08T23:03:58,308 k = self.angles[n, 2] 2025-09-08T23:03:58,308 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,308 if err != 0: return err 2025-09-08T23:03:58,308 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,308 if err != 0: return err 2025-09-08T23:03:58,308 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,308 ^ 2025-09-08T23:03:58,308 ------------------------------------------------------------ 2025-09-08T23:03:58,308 sella/internal/int_classes.pyx:336:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,309 Error compiling Cython file: 2025-09-08T23:03:58,309 ------------------------------------------------------------ 2025-09-08T23:03:58,309 ... 2025-09-08T23:03:58,309 k = self.angles[n, 2] 2025-09-08T23:03:58,309 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,309 if err != 0: return err 2025-09-08T23:03:58,309 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,309 if err != 0: return err 2025-09-08T23:03:58,309 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,309 ^ 2025-09-08T23:03:58,309 ------------------------------------------------------------ 2025-09-08T23:03:58,310 sella/internal/int_classes.pyx:336:39: Converting to Python object not allowed without gil 2025-09-08T23:03:58,310 Error compiling Cython file: 2025-09-08T23:03:58,310 ------------------------------------------------------------ 2025-09-08T23:03:58,310 ... 2025-09-08T23:03:58,310 k = self.angles[n, 2] 2025-09-08T23:03:58,310 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,310 if err != 0: return err 2025-09-08T23:03:58,310 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,310 if err != 0: return err 2025-09-08T23:03:58,310 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,310 ^ 2025-09-08T23:03:58,311 ------------------------------------------------------------ 2025-09-08T23:03:58,311 sella/internal/int_classes.pyx:336:46: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,311 Error compiling Cython file: 2025-09-08T23:03:58,311 ------------------------------------------------------------ 2025-09-08T23:03:58,311 ... 2025-09-08T23:03:58,311 k = self.angles[n, 2] 2025-09-08T23:03:58,311 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,311 if err != 0: return err 2025-09-08T23:03:58,311 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,311 if err != 0: return err 2025-09-08T23:03:58,311 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,312 ^ 2025-09-08T23:03:58,312 ------------------------------------------------------------ 2025-09-08T23:03:58,312 sella/internal/int_classes.pyx:336:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,312 Error compiling Cython file: 2025-09-08T23:03:58,312 ------------------------------------------------------------ 2025-09-08T23:03:58,312 ... 2025-09-08T23:03:58,312 k = self.angles[n, 2] 2025-09-08T23:03:58,312 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,312 if err != 0: return err 2025-09-08T23:03:58,312 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,313 if err != 0: return err 2025-09-08T23:03:58,313 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,313 ^ 2025-09-08T23:03:58,313 ------------------------------------------------------------ 2025-09-08T23:03:58,313 sella/internal/int_classes.pyx:336:62: Converting to Python object not allowed without gil 2025-09-08T23:03:58,313 Error compiling Cython file: 2025-09-08T23:03:58,313 ------------------------------------------------------------ 2025-09-08T23:03:58,313 ... 2025-09-08T23:03:58,313 k = self.angles[n, 2] 2025-09-08T23:03:58,314 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,314 if err != 0: return err 2025-09-08T23:03:58,314 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,314 if err != 0: return err 2025-09-08T23:03:58,314 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,314 ^ 2025-09-08T23:03:58,314 ------------------------------------------------------------ 2025-09-08T23:03:58,314 sella/internal/int_classes.pyx:336:70: Indexing Python object not allowed without gil 2025-09-08T23:03:58,314 Error compiling Cython file: 2025-09-08T23:03:58,315 ------------------------------------------------------------ 2025-09-08T23:03:58,315 ... 2025-09-08T23:03:58,315 k = self.angles[n, 2] 2025-09-08T23:03:58,315 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,315 if err != 0: return err 2025-09-08T23:03:58,315 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,315 if err != 0: return err 2025-09-08T23:03:58,315 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,315 ^ 2025-09-08T23:03:58,315 ------------------------------------------------------------ 2025-09-08T23:03:58,315 sella/internal/int_classes.pyx:336:67: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,316 Error compiling Cython file: 2025-09-08T23:03:58,316 ------------------------------------------------------------ 2025-09-08T23:03:58,316 ... 2025-09-08T23:03:58,316 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,316 if err != 0: return err 2025-09-08T23:03:58,316 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,316 if err != 0: return err 2025-09-08T23:03:58,316 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,316 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,316 ^ 2025-09-08T23:03:58,316 ------------------------------------------------------------ 2025-09-08T23:03:58,317 sella/internal/int_classes.pyx:337:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,317 Error compiling Cython file: 2025-09-08T23:03:58,317 ------------------------------------------------------------ 2025-09-08T23:03:58,317 ... 2025-09-08T23:03:58,317 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,317 if err != 0: return err 2025-09-08T23:03:58,317 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,317 if err != 0: return err 2025-09-08T23:03:58,317 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,317 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,317 ^ 2025-09-08T23:03:58,318 ------------------------------------------------------------ 2025-09-08T23:03:58,318 sella/internal/int_classes.pyx:337:37: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,318 Error compiling Cython file: 2025-09-08T23:03:58,318 ------------------------------------------------------------ 2025-09-08T23:03:58,318 ... 2025-09-08T23:03:58,318 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,318 if err != 0: return err 2025-09-08T23:03:58,318 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,318 if err != 0: return err 2025-09-08T23:03:58,318 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,318 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,319 ^ 2025-09-08T23:03:58,319 ------------------------------------------------------------ 2025-09-08T23:03:58,319 sella/internal/int_classes.pyx:337:64: Indexing Python object not allowed without gil 2025-09-08T23:03:58,319 Error compiling Cython file: 2025-09-08T23:03:58,319 ------------------------------------------------------------ 2025-09-08T23:03:58,319 ... 2025-09-08T23:03:58,319 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,319 if err != 0: return err 2025-09-08T23:03:58,319 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,319 if err != 0: return err 2025-09-08T23:03:58,320 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,320 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,320 ^ 2025-09-08T23:03:58,320 ------------------------------------------------------------ 2025-09-08T23:03:58,320 sella/internal/int_classes.pyx:337:53: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,320 Error compiling Cython file: 2025-09-08T23:03:58,320 ------------------------------------------------------------ 2025-09-08T23:03:58,320 ... 2025-09-08T23:03:58,320 if err != 0: return err 2025-09-08T23:03:58,320 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,321 if err != 0: return err 2025-09-08T23:03:58,321 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,321 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,321 self.work1, grad, curv) 2025-09-08T23:03:58,321 ^ 2025-09-08T23:03:58,321 ------------------------------------------------------------ 2025-09-08T23:03:58,321 sella/internal/int_classes.pyx:338:37: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,321 Error compiling Cython file: 2025-09-08T23:03:58,321 ------------------------------------------------------------ 2025-09-08T23:03:58,321 ... 2025-09-08T23:03:58,321 if err != 0: return err 2025-09-08T23:03:58,322 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,322 if err != 0: return err 2025-09-08T23:03:58,322 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,322 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,322 self.work1, grad, curv) 2025-09-08T23:03:58,322 ^ 2025-09-08T23:03:58,322 ------------------------------------------------------------ 2025-09-08T23:03:58,322 sella/internal/int_classes.pyx:338:45: Converting to Python object not allowed without gil 2025-09-08T23:03:58,322 Error compiling Cython file: 2025-09-08T23:03:58,322 ------------------------------------------------------------ 2025-09-08T23:03:58,323 ... 2025-09-08T23:03:58,323 if err != 0: return err 2025-09-08T23:03:58,323 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,323 if err != 0: return err 2025-09-08T23:03:58,323 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,323 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,323 self.work1, grad, curv) 2025-09-08T23:03:58,323 ^ 2025-09-08T23:03:58,323 ------------------------------------------------------------ 2025-09-08T23:03:58,323 sella/internal/int_classes.pyx:338:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,324 Error compiling Cython file: 2025-09-08T23:03:58,324 ------------------------------------------------------------ 2025-09-08T23:03:58,324 ... 2025-09-08T23:03:58,324 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,324 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,324 self.work1, grad, curv) 2025-09-08T23:03:58,324 if info < 0: return info 2025-09-08T23:03:58,324 m += self.nangles 2025-09-08T23:03:58,324 ^ 2025-09-08T23:03:58,324 ------------------------------------------------------------ 2025-09-08T23:03:58,325 sella/internal/int_classes.pyx:341:8: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,325 Error compiling Cython file: 2025-09-08T23:03:58,325 ------------------------------------------------------------ 2025-09-08T23:03:58,325 ... 2025-09-08T23:03:58,325 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,325 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,325 self.work1, grad, curv) 2025-09-08T23:03:58,325 if info < 0: return info 2025-09-08T23:03:58,325 m += self.nangles 2025-09-08T23:03:58,325 ^ 2025-09-08T23:03:58,325 ------------------------------------------------------------ 2025-09-08T23:03:58,326 sella/internal/int_classes.pyx:341:8: Operation not allowed without gil 2025-09-08T23:03:58,326 Error compiling Cython file: 2025-09-08T23:03:58,326 ------------------------------------------------------------ 2025-09-08T23:03:58,326 ... 2025-09-08T23:03:58,326 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,326 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,326 self.work1, grad, curv) 2025-09-08T23:03:58,326 if info < 0: return info 2025-09-08T23:03:58,326 m += self.nangles 2025-09-08T23:03:58,327 ^ 2025-09-08T23:03:58,327 ------------------------------------------------------------ 2025-09-08T23:03:58,327 sella/internal/int_classes.pyx:341:8: Converting to Python object not allowed without gil 2025-09-08T23:03:58,327 Error compiling Cython file: 2025-09-08T23:03:58,327 ------------------------------------------------------------ 2025-09-08T23:03:58,327 ... 2025-09-08T23:03:58,327 info = cart_to_angle(i, j, k, self.dx1, self.dx2, &self.q1[m + n], 2025-09-08T23:03:58,327 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,327 self.work1, grad, curv) 2025-09-08T23:03:58,327 if info < 0: return info 2025-09-08T23:03:58,328 m += self.nangles 2025-09-08T23:03:58,328 ^ 2025-09-08T23:03:58,328 ------------------------------------------------------------ 2025-09-08T23:03:58,328 sella/internal/int_classes.pyx:341:17: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,328 Error compiling Cython file: 2025-09-08T23:03:58,328 ------------------------------------------------------------ 2025-09-08T23:03:58,328 ... 2025-09-08T23:03:58,328 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,328 self.work1, grad, curv) 2025-09-08T23:03:58,328 if info < 0: return info 2025-09-08T23:03:58,329 m += self.nangles 2025-09-08T23:03:58,329 for n in range(self.ndihedrals): 2025-09-08T23:03:58,329 ^ 2025-09-08T23:03:58,329 ------------------------------------------------------------ 2025-09-08T23:03:58,329 sella/internal/int_classes.pyx:342:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,329 Error compiling Cython file: 2025-09-08T23:03:58,329 ------------------------------------------------------------ 2025-09-08T23:03:58,329 ... 2025-09-08T23:03:58,330 self.dq[m + n], self.d2q_angles[n], 2025-09-08T23:03:58,330 self.work1, grad, curv) 2025-09-08T23:03:58,330 if info < 0: return info 2025-09-08T23:03:58,330 m += self.nangles 2025-09-08T23:03:58,330 for n in range(self.ndihedrals): 2025-09-08T23:03:58,330 ^ 2025-09-08T23:03:58,330 ------------------------------------------------------------ 2025-09-08T23:03:58,330 sella/internal/int_classes.pyx:342:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,330 Error compiling Cython file: 2025-09-08T23:03:58,331 ------------------------------------------------------------ 2025-09-08T23:03:58,331 ... 2025-09-08T23:03:58,331 self.work1, grad, curv) 2025-09-08T23:03:58,331 if info < 0: return info 2025-09-08T23:03:58,331 m += self.nangles 2025-09-08T23:03:58,331 for n in range(self.ndihedrals): 2025-09-08T23:03:58,331 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,331 ^ 2025-09-08T23:03:58,331 ------------------------------------------------------------ 2025-09-08T23:03:58,331 sella/internal/int_classes.pyx:343:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,332 Error compiling Cython file: 2025-09-08T23:03:58,332 ------------------------------------------------------------ 2025-09-08T23:03:58,332 ... 2025-09-08T23:03:58,332 self.work1, grad, curv) 2025-09-08T23:03:58,332 if info < 0: return info 2025-09-08T23:03:58,332 m += self.nangles 2025-09-08T23:03:58,332 for n in range(self.ndihedrals): 2025-09-08T23:03:58,332 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,332 ^ 2025-09-08T23:03:58,332 ------------------------------------------------------------ 2025-09-08T23:03:58,333 sella/internal/int_classes.pyx:343:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,333 Error compiling Cython file: 2025-09-08T23:03:58,333 ------------------------------------------------------------ 2025-09-08T23:03:58,333 ... 2025-09-08T23:03:58,333 self.work1, grad, curv) 2025-09-08T23:03:58,333 if info < 0: return info 2025-09-08T23:03:58,333 m += self.nangles 2025-09-08T23:03:58,333 for n in range(self.ndihedrals): 2025-09-08T23:03:58,333 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,334 ^ 2025-09-08T23:03:58,334 ------------------------------------------------------------ 2025-09-08T23:03:58,334 sella/internal/int_classes.pyx:343:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,334 Error compiling Cython file: 2025-09-08T23:03:58,334 ------------------------------------------------------------ 2025-09-08T23:03:58,334 ... 2025-09-08T23:03:58,334 self.work1, grad, curv) 2025-09-08T23:03:58,334 if info < 0: return info 2025-09-08T23:03:58,334 m += self.nangles 2025-09-08T23:03:58,334 for n in range(self.ndihedrals): 2025-09-08T23:03:58,335 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,335 ^ 2025-09-08T23:03:58,335 ------------------------------------------------------------ 2025-09-08T23:03:58,335 sella/internal/int_classes.pyx:343:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,335 Error compiling Cython file: 2025-09-08T23:03:58,335 ------------------------------------------------------------ 2025-09-08T23:03:58,335 ... 2025-09-08T23:03:58,335 self.work1, grad, curv) 2025-09-08T23:03:58,335 if info < 0: return info 2025-09-08T23:03:58,336 m += self.nangles 2025-09-08T23:03:58,336 for n in range(self.ndihedrals): 2025-09-08T23:03:58,336 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,336 ^ 2025-09-08T23:03:58,336 ------------------------------------------------------------ 2025-09-08T23:03:58,336 sella/internal/int_classes.pyx:343:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,336 Error compiling Cython file: 2025-09-08T23:03:58,336 ------------------------------------------------------------ 2025-09-08T23:03:58,336 ... 2025-09-08T23:03:58,336 if info < 0: return info 2025-09-08T23:03:58,337 m += self.nangles 2025-09-08T23:03:58,337 for n in range(self.ndihedrals): 2025-09-08T23:03:58,337 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,337 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,337 ^ 2025-09-08T23:03:58,337 ------------------------------------------------------------ 2025-09-08T23:03:58,337 sella/internal/int_classes.pyx:344:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,337 Error compiling Cython file: 2025-09-08T23:03:58,337 ------------------------------------------------------------ 2025-09-08T23:03:58,337 ... 2025-09-08T23:03:58,338 if info < 0: return info 2025-09-08T23:03:58,338 m += self.nangles 2025-09-08T23:03:58,338 for n in range(self.ndihedrals): 2025-09-08T23:03:58,338 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,338 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,338 ^ 2025-09-08T23:03:58,338 ------------------------------------------------------------ 2025-09-08T23:03:58,338 sella/internal/int_classes.pyx:344:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,338 Error compiling Cython file: 2025-09-08T23:03:58,339 ------------------------------------------------------------ 2025-09-08T23:03:58,339 ... 2025-09-08T23:03:58,339 if info < 0: return info 2025-09-08T23:03:58,339 m += self.nangles 2025-09-08T23:03:58,339 for n in range(self.ndihedrals): 2025-09-08T23:03:58,339 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,339 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,339 ^ 2025-09-08T23:03:58,339 ------------------------------------------------------------ 2025-09-08T23:03:58,339 sella/internal/int_classes.pyx:344:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,340 Error compiling Cython file: 2025-09-08T23:03:58,340 ------------------------------------------------------------ 2025-09-08T23:03:58,340 ... 2025-09-08T23:03:58,340 if info < 0: return info 2025-09-08T23:03:58,340 m += self.nangles 2025-09-08T23:03:58,340 for n in range(self.ndihedrals): 2025-09-08T23:03:58,340 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,340 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,340 ^ 2025-09-08T23:03:58,340 ------------------------------------------------------------ 2025-09-08T23:03:58,341 sella/internal/int_classes.pyx:344:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,341 Error compiling Cython file: 2025-09-08T23:03:58,341 ------------------------------------------------------------ 2025-09-08T23:03:58,341 ... 2025-09-08T23:03:58,341 if info < 0: return info 2025-09-08T23:03:58,341 m += self.nangles 2025-09-08T23:03:58,341 for n in range(self.ndihedrals): 2025-09-08T23:03:58,341 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,341 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,341 ^ 2025-09-08T23:03:58,341 ------------------------------------------------------------ 2025-09-08T23:03:58,342 sella/internal/int_classes.pyx:344:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,342 Error compiling Cython file: 2025-09-08T23:03:58,342 ------------------------------------------------------------ 2025-09-08T23:03:58,342 ... 2025-09-08T23:03:58,342 m += self.nangles 2025-09-08T23:03:58,342 for n in range(self.ndihedrals): 2025-09-08T23:03:58,342 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,342 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,342 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,343 ^ 2025-09-08T23:03:58,343 ------------------------------------------------------------ 2025-09-08T23:03:58,343 sella/internal/int_classes.pyx:345:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,343 Error compiling Cython file: 2025-09-08T23:03:58,343 ------------------------------------------------------------ 2025-09-08T23:03:58,343 ... 2025-09-08T23:03:58,343 m += self.nangles 2025-09-08T23:03:58,343 for n in range(self.ndihedrals): 2025-09-08T23:03:58,343 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,344 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,344 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,344 ^ 2025-09-08T23:03:58,344 ------------------------------------------------------------ 2025-09-08T23:03:58,344 sella/internal/int_classes.pyx:345:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,344 Error compiling Cython file: 2025-09-08T23:03:58,344 ------------------------------------------------------------ 2025-09-08T23:03:58,344 ... 2025-09-08T23:03:58,344 m += self.nangles 2025-09-08T23:03:58,345 for n in range(self.ndihedrals): 2025-09-08T23:03:58,345 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,345 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,345 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,345 ^ 2025-09-08T23:03:58,345 ------------------------------------------------------------ 2025-09-08T23:03:58,345 sella/internal/int_classes.pyx:345:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,345 Error compiling Cython file: 2025-09-08T23:03:58,345 ------------------------------------------------------------ 2025-09-08T23:03:58,345 ... 2025-09-08T23:03:58,346 m += self.nangles 2025-09-08T23:03:58,346 for n in range(self.ndihedrals): 2025-09-08T23:03:58,346 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,346 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,346 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,346 ^ 2025-09-08T23:03:58,346 ------------------------------------------------------------ 2025-09-08T23:03:58,346 sella/internal/int_classes.pyx:345:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,346 Error compiling Cython file: 2025-09-08T23:03:58,346 ------------------------------------------------------------ 2025-09-08T23:03:58,347 ... 2025-09-08T23:03:58,347 m += self.nangles 2025-09-08T23:03:58,347 for n in range(self.ndihedrals): 2025-09-08T23:03:58,347 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,347 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,347 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,347 ^ 2025-09-08T23:03:58,347 ------------------------------------------------------------ 2025-09-08T23:03:58,347 sella/internal/int_classes.pyx:345:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,347 Error compiling Cython file: 2025-09-08T23:03:58,348 ------------------------------------------------------------ 2025-09-08T23:03:58,348 ... 2025-09-08T23:03:58,348 m += self.nangles 2025-09-08T23:03:58,348 for n in range(self.ndihedrals): 2025-09-08T23:03:58,348 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,348 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,348 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,348 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,348 ^ 2025-09-08T23:03:58,348 ------------------------------------------------------------ 2025-09-08T23:03:58,348 sella/internal/int_classes.pyx:346:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,349 Error compiling Cython file: 2025-09-08T23:03:58,349 ------------------------------------------------------------ 2025-09-08T23:03:58,349 ... 2025-09-08T23:03:58,349 m += self.nangles 2025-09-08T23:03:58,349 for n in range(self.ndihedrals): 2025-09-08T23:03:58,349 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,349 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,349 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,349 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,349 ^ 2025-09-08T23:03:58,350 ------------------------------------------------------------ 2025-09-08T23:03:58,350 sella/internal/int_classes.pyx:346:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,350 Error compiling Cython file: 2025-09-08T23:03:58,350 ------------------------------------------------------------ 2025-09-08T23:03:58,350 ... 2025-09-08T23:03:58,350 m += self.nangles 2025-09-08T23:03:58,350 for n in range(self.ndihedrals): 2025-09-08T23:03:58,350 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,350 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,350 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,351 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,351 ^ 2025-09-08T23:03:58,351 ------------------------------------------------------------ 2025-09-08T23:03:58,351 sella/internal/int_classes.pyx:346:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,351 Error compiling Cython file: 2025-09-08T23:03:58,351 ------------------------------------------------------------ 2025-09-08T23:03:58,351 ... 2025-09-08T23:03:58,351 m += self.nangles 2025-09-08T23:03:58,351 for n in range(self.ndihedrals): 2025-09-08T23:03:58,351 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,352 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,352 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,352 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,352 ^ 2025-09-08T23:03:58,352 ------------------------------------------------------------ 2025-09-08T23:03:58,352 sella/internal/int_classes.pyx:346:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,352 Error compiling Cython file: 2025-09-08T23:03:58,352 ------------------------------------------------------------ 2025-09-08T23:03:58,352 ... 2025-09-08T23:03:58,352 m += self.nangles 2025-09-08T23:03:58,353 for n in range(self.ndihedrals): 2025-09-08T23:03:58,353 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,353 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,353 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,353 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,353 ^ 2025-09-08T23:03:58,353 ------------------------------------------------------------ 2025-09-08T23:03:58,353 sella/internal/int_classes.pyx:346:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,353 Error compiling Cython file: 2025-09-08T23:03:58,353 ------------------------------------------------------------ 2025-09-08T23:03:58,354 ... 2025-09-08T23:03:58,354 for n in range(self.ndihedrals): 2025-09-08T23:03:58,354 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,354 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,354 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,354 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,354 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,354 ^ 2025-09-08T23:03:58,354 ------------------------------------------------------------ 2025-09-08T23:03:58,354 sella/internal/int_classes.pyx:347:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,354 Error compiling Cython file: 2025-09-08T23:03:58,355 ------------------------------------------------------------ 2025-09-08T23:03:58,355 ... 2025-09-08T23:03:58,355 for n in range(self.ndihedrals): 2025-09-08T23:03:58,355 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,355 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,355 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,355 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,355 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,355 ^ 2025-09-08T23:03:58,355 ------------------------------------------------------------ 2025-09-08T23:03:58,355 sella/internal/int_classes.pyx:347:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,356 Error compiling Cython file: 2025-09-08T23:03:58,356 ------------------------------------------------------------ 2025-09-08T23:03:58,356 ... 2025-09-08T23:03:58,356 for n in range(self.ndihedrals): 2025-09-08T23:03:58,356 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,356 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,356 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,356 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,356 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,356 ^ 2025-09-08T23:03:58,356 ------------------------------------------------------------ 2025-09-08T23:03:58,357 sella/internal/int_classes.pyx:347:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,357 Error compiling Cython file: 2025-09-08T23:03:58,357 ------------------------------------------------------------ 2025-09-08T23:03:58,357 ... 2025-09-08T23:03:58,357 for n in range(self.ndihedrals): 2025-09-08T23:03:58,357 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,357 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,357 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,357 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,357 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,357 ^ 2025-09-08T23:03:58,358 ------------------------------------------------------------ 2025-09-08T23:03:58,358 sella/internal/int_classes.pyx:347:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,358 Error compiling Cython file: 2025-09-08T23:03:58,358 ------------------------------------------------------------ 2025-09-08T23:03:58,358 ... 2025-09-08T23:03:58,358 for n in range(self.ndihedrals): 2025-09-08T23:03:58,358 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,358 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,358 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,358 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,359 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,359 ^ 2025-09-08T23:03:58,359 ------------------------------------------------------------ 2025-09-08T23:03:58,359 sella/internal/int_classes.pyx:347:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,359 Error compiling Cython file: 2025-09-08T23:03:58,359 ------------------------------------------------------------ 2025-09-08T23:03:58,359 ... 2025-09-08T23:03:58,359 for n in range(self.ndihedrals): 2025-09-08T23:03:58,359 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,359 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,359 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,360 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,360 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,360 ^ 2025-09-08T23:03:58,360 ------------------------------------------------------------ 2025-09-08T23:03:58,360 sella/internal/int_classes.pyx:347:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,360 Error compiling Cython file: 2025-09-08T23:03:58,360 ------------------------------------------------------------ 2025-09-08T23:03:58,360 ... 2025-09-08T23:03:58,360 for n in range(self.ndihedrals): 2025-09-08T23:03:58,360 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,361 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,361 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,361 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,361 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,361 ^ 2025-09-08T23:03:58,361 ------------------------------------------------------------ 2025-09-08T23:03:58,361 sella/internal/int_classes.pyx:347:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,361 Error compiling Cython file: 2025-09-08T23:03:58,361 ------------------------------------------------------------ 2025-09-08T23:03:58,361 ... 2025-09-08T23:03:58,362 for n in range(self.ndihedrals): 2025-09-08T23:03:58,362 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,362 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,362 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,362 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,362 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,362 ^ 2025-09-08T23:03:58,362 ------------------------------------------------------------ 2025-09-08T23:03:58,362 sella/internal/int_classes.pyx:347:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,362 Error compiling Cython file: 2025-09-08T23:03:58,363 ------------------------------------------------------------ 2025-09-08T23:03:58,363 ... 2025-09-08T23:03:58,363 for n in range(self.ndihedrals): 2025-09-08T23:03:58,363 i = self.dihedrals[n, 0] 2025-09-08T23:03:58,363 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,363 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,363 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,363 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,363 ^ 2025-09-08T23:03:58,363 ------------------------------------------------------------ 2025-09-08T23:03:58,363 sella/internal/int_classes.pyx:347:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,364 Error compiling Cython file: 2025-09-08T23:03:58,364 ------------------------------------------------------------ 2025-09-08T23:03:58,364 ... 2025-09-08T23:03:58,364 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,364 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,364 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,364 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,364 if err != 0: return err 2025-09-08T23:03:58,364 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,364 ^ 2025-09-08T23:03:58,364 ------------------------------------------------------------ 2025-09-08T23:03:58,365 sella/internal/int_classes.pyx:349:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,365 Error compiling Cython file: 2025-09-08T23:03:58,365 ------------------------------------------------------------ 2025-09-08T23:03:58,365 ... 2025-09-08T23:03:58,365 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,365 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,365 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,365 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,365 if err != 0: return err 2025-09-08T23:03:58,365 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,365 ^ 2025-09-08T23:03:58,366 ------------------------------------------------------------ 2025-09-08T23:03:58,366 sella/internal/int_classes.pyx:349:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,366 Error compiling Cython file: 2025-09-08T23:03:58,366 ------------------------------------------------------------ 2025-09-08T23:03:58,366 ... 2025-09-08T23:03:58,366 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,366 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,366 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,366 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,366 if err != 0: return err 2025-09-08T23:03:58,367 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,367 ^ 2025-09-08T23:03:58,367 ------------------------------------------------------------ 2025-09-08T23:03:58,367 sella/internal/int_classes.pyx:349:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,367 Error compiling Cython file: 2025-09-08T23:03:58,367 ------------------------------------------------------------ 2025-09-08T23:03:58,367 ... 2025-09-08T23:03:58,367 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,367 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,367 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,368 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,368 if err != 0: return err 2025-09-08T23:03:58,368 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,368 ^ 2025-09-08T23:03:58,368 ------------------------------------------------------------ 2025-09-08T23:03:58,368 sella/internal/int_classes.pyx:349:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,368 Error compiling Cython file: 2025-09-08T23:03:58,368 ------------------------------------------------------------ 2025-09-08T23:03:58,368 ... 2025-09-08T23:03:58,368 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,369 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,369 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,369 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,369 if err != 0: return err 2025-09-08T23:03:58,369 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,369 ^ 2025-09-08T23:03:58,369 ------------------------------------------------------------ 2025-09-08T23:03:58,369 sella/internal/int_classes.pyx:349:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,369 Error compiling Cython file: 2025-09-08T23:03:58,369 ------------------------------------------------------------ 2025-09-08T23:03:58,370 ... 2025-09-08T23:03:58,370 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,370 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,370 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,370 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,370 if err != 0: return err 2025-09-08T23:03:58,370 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,370 ^ 2025-09-08T23:03:58,370 ------------------------------------------------------------ 2025-09-08T23:03:58,370 sella/internal/int_classes.pyx:349:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,371 Error compiling Cython file: 2025-09-08T23:03:58,371 ------------------------------------------------------------ 2025-09-08T23:03:58,371 ... 2025-09-08T23:03:58,371 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,371 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,371 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,371 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,371 if err != 0: return err 2025-09-08T23:03:58,371 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,371 ^ 2025-09-08T23:03:58,371 ------------------------------------------------------------ 2025-09-08T23:03:58,372 sella/internal/int_classes.pyx:349:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,372 Error compiling Cython file: 2025-09-08T23:03:58,372 ------------------------------------------------------------ 2025-09-08T23:03:58,372 ... 2025-09-08T23:03:58,372 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,372 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,372 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,372 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,372 if err != 0: return err 2025-09-08T23:03:58,372 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,372 ^ 2025-09-08T23:03:58,373 ------------------------------------------------------------ 2025-09-08T23:03:58,373 sella/internal/int_classes.pyx:349:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,373 Error compiling Cython file: 2025-09-08T23:03:58,373 ------------------------------------------------------------ 2025-09-08T23:03:58,373 ... 2025-09-08T23:03:58,373 j = self.dihedrals[n, 1] 2025-09-08T23:03:58,373 k = self.dihedrals[n, 2] 2025-09-08T23:03:58,373 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,373 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,373 if err != 0: return err 2025-09-08T23:03:58,373 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,374 ^ 2025-09-08T23:03:58,374 ------------------------------------------------------------ 2025-09-08T23:03:58,374 sella/internal/int_classes.pyx:349:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,374 Error compiling Cython file: 2025-09-08T23:03:58,374 ------------------------------------------------------------ 2025-09-08T23:03:58,374 ... 2025-09-08T23:03:58,374 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,374 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,374 if err != 0: return err 2025-09-08T23:03:58,374 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,375 if err != 0: return err 2025-09-08T23:03:58,375 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,375 ^ 2025-09-08T23:03:58,375 ------------------------------------------------------------ 2025-09-08T23:03:58,375 sella/internal/int_classes.pyx:351:25: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,375 Error compiling Cython file: 2025-09-08T23:03:58,375 ------------------------------------------------------------ 2025-09-08T23:03:58,375 ... 2025-09-08T23:03:58,375 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,375 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,376 if err != 0: return err 2025-09-08T23:03:58,376 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,376 if err != 0: return err 2025-09-08T23:03:58,376 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,376 ^ 2025-09-08T23:03:58,376 ------------------------------------------------------------ 2025-09-08T23:03:58,376 sella/internal/int_classes.pyx:351:25: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,376 Error compiling Cython file: 2025-09-08T23:03:58,376 ------------------------------------------------------------ 2025-09-08T23:03:58,376 ... 2025-09-08T23:03:58,376 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,377 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,377 if err != 0: return err 2025-09-08T23:03:58,377 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,377 if err != 0: return err 2025-09-08T23:03:58,377 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,377 ^ 2025-09-08T23:03:58,377 ------------------------------------------------------------ 2025-09-08T23:03:58,377 sella/internal/int_classes.pyx:351:18: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,377 Error compiling Cython file: 2025-09-08T23:03:58,377 ------------------------------------------------------------ 2025-09-08T23:03:58,378 ... 2025-09-08T23:03:58,378 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,378 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,378 if err != 0: return err 2025-09-08T23:03:58,378 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,378 if err != 0: return err 2025-09-08T23:03:58,378 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,378 ^ 2025-09-08T23:03:58,378 ------------------------------------------------------------ 2025-09-08T23:03:58,378 sella/internal/int_classes.pyx:351:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,379 Error compiling Cython file: 2025-09-08T23:03:58,379 ------------------------------------------------------------ 2025-09-08T23:03:58,379 ... 2025-09-08T23:03:58,379 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,379 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,379 if err != 0: return err 2025-09-08T23:03:58,379 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,379 if err != 0: return err 2025-09-08T23:03:58,379 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,379 ^ 2025-09-08T23:03:58,379 ------------------------------------------------------------ 2025-09-08T23:03:58,379 sella/internal/int_classes.pyx:351:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,380 Error compiling Cython file: 2025-09-08T23:03:58,380 ------------------------------------------------------------ 2025-09-08T23:03:58,380 ... 2025-09-08T23:03:58,380 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,380 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,380 if err != 0: return err 2025-09-08T23:03:58,380 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,380 if err != 0: return err 2025-09-08T23:03:58,380 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,380 ^ 2025-09-08T23:03:58,380 ------------------------------------------------------------ 2025-09-08T23:03:58,381 sella/internal/int_classes.pyx:351:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,381 Error compiling Cython file: 2025-09-08T23:03:58,381 ------------------------------------------------------------ 2025-09-08T23:03:58,381 ... 2025-09-08T23:03:58,381 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,381 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,381 if err != 0: return err 2025-09-08T23:03:58,381 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,381 if err != 0: return err 2025-09-08T23:03:58,381 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,382 ^ 2025-09-08T23:03:58,382 ------------------------------------------------------------ 2025-09-08T23:03:58,382 sella/internal/int_classes.pyx:351:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,382 Error compiling Cython file: 2025-09-08T23:03:58,382 ------------------------------------------------------------ 2025-09-08T23:03:58,382 ... 2025-09-08T23:03:58,382 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,382 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,382 if err != 0: return err 2025-09-08T23:03:58,382 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,382 if err != 0: return err 2025-09-08T23:03:58,383 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,383 ^ 2025-09-08T23:03:58,383 ------------------------------------------------------------ 2025-09-08T23:03:58,383 sella/internal/int_classes.pyx:351:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,383 Error compiling Cython file: 2025-09-08T23:03:58,383 ------------------------------------------------------------ 2025-09-08T23:03:58,383 ... 2025-09-08T23:03:58,383 l = self.dihedrals[n, 3] 2025-09-08T23:03:58,384 err = vec_sum(self.pos[l], self.pos[k], self.dx3, -1.) 2025-09-08T23:03:58,384 if err != 0: return err 2025-09-08T23:03:58,384 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,384 if err != 0: return err 2025-09-08T23:03:58,384 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,384 ^ 2025-09-08T23:03:58,384 ------------------------------------------------------------ 2025-09-08T23:03:58,384 sella/internal/int_classes.pyx:351:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,384 Error compiling Cython file: 2025-09-08T23:03:58,384 ------------------------------------------------------------ 2025-09-08T23:03:58,385 ... 2025-09-08T23:03:58,385 if err != 0: return err 2025-09-08T23:03:58,385 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,385 if err != 0: return err 2025-09-08T23:03:58,385 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,385 if err != 0: return err 2025-09-08T23:03:58,385 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,385 ^ 2025-09-08T23:03:58,385 ------------------------------------------------------------ 2025-09-08T23:03:58,385 sella/internal/int_classes.pyx:353:35: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,385 Error compiling Cython file: 2025-09-08T23:03:58,386 ------------------------------------------------------------ 2025-09-08T23:03:58,386 ... 2025-09-08T23:03:58,386 if err != 0: return err 2025-09-08T23:03:58,386 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,386 if err != 0: return err 2025-09-08T23:03:58,386 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,386 if err != 0: return err 2025-09-08T23:03:58,386 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,386 ^ 2025-09-08T23:03:58,386 ------------------------------------------------------------ 2025-09-08T23:03:58,386 sella/internal/int_classes.pyx:353:35: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,387 Error compiling Cython file: 2025-09-08T23:03:58,387 ------------------------------------------------------------ 2025-09-08T23:03:58,387 ... 2025-09-08T23:03:58,387 if err != 0: return err 2025-09-08T23:03:58,387 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,387 if err != 0: return err 2025-09-08T23:03:58,387 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,387 if err != 0: return err 2025-09-08T23:03:58,387 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,387 ^ 2025-09-08T23:03:58,387 ------------------------------------------------------------ 2025-09-08T23:03:58,388 sella/internal/int_classes.pyx:353:19: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,388 Error compiling Cython file: 2025-09-08T23:03:58,388 ------------------------------------------------------------ 2025-09-08T23:03:58,388 ... 2025-09-08T23:03:58,388 if err != 0: return err 2025-09-08T23:03:58,388 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,388 if err != 0: return err 2025-09-08T23:03:58,388 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,388 if err != 0: return err 2025-09-08T23:03:58,388 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,388 ^ 2025-09-08T23:03:58,389 ------------------------------------------------------------ 2025-09-08T23:03:58,389 sella/internal/int_classes.pyx:353:35: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,389 Error compiling Cython file: 2025-09-08T23:03:58,389 ------------------------------------------------------------ 2025-09-08T23:03:58,389 ... 2025-09-08T23:03:58,389 if err != 0: return err 2025-09-08T23:03:58,389 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,389 if err != 0: return err 2025-09-08T23:03:58,389 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,389 if err != 0: return err 2025-09-08T23:03:58,390 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,390 ^ 2025-09-08T23:03:58,390 ------------------------------------------------------------ 2025-09-08T23:03:58,390 sella/internal/int_classes.pyx:353:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,390 Error compiling Cython file: 2025-09-08T23:03:58,390 ------------------------------------------------------------ 2025-09-08T23:03:58,390 ... 2025-09-08T23:03:58,390 if err != 0: return err 2025-09-08T23:03:58,390 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,390 if err != 0: return err 2025-09-08T23:03:58,390 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,391 if err != 0: return err 2025-09-08T23:03:58,391 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,391 ^ 2025-09-08T23:03:58,391 ------------------------------------------------------------ 2025-09-08T23:03:58,391 sella/internal/int_classes.pyx:353:39: Converting to Python object not allowed without gil 2025-09-08T23:03:58,391 Error compiling Cython file: 2025-09-08T23:03:58,391 ------------------------------------------------------------ 2025-09-08T23:03:58,391 ... 2025-09-08T23:03:58,391 if err != 0: return err 2025-09-08T23:03:58,391 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,392 if err != 0: return err 2025-09-08T23:03:58,392 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,392 if err != 0: return err 2025-09-08T23:03:58,392 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,392 ^ 2025-09-08T23:03:58,392 ------------------------------------------------------------ 2025-09-08T23:03:58,392 sella/internal/int_classes.pyx:353:42: Converting to Python object not allowed without gil 2025-09-08T23:03:58,392 Error compiling Cython file: 2025-09-08T23:03:58,392 ------------------------------------------------------------ 2025-09-08T23:03:58,392 ... 2025-09-08T23:03:58,393 if err != 0: return err 2025-09-08T23:03:58,393 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,393 if err != 0: return err 2025-09-08T23:03:58,393 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,393 if err != 0: return err 2025-09-08T23:03:58,393 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,393 ^ 2025-09-08T23:03:58,393 ------------------------------------------------------------ 2025-09-08T23:03:58,393 sella/internal/int_classes.pyx:353:45: Converting to Python object not allowed without gil 2025-09-08T23:03:58,393 Error compiling Cython file: 2025-09-08T23:03:58,394 ------------------------------------------------------------ 2025-09-08T23:03:58,394 ... 2025-09-08T23:03:58,394 if err != 0: return err 2025-09-08T23:03:58,394 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,394 if err != 0: return err 2025-09-08T23:03:58,394 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,394 if err != 0: return err 2025-09-08T23:03:58,394 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,394 ^ 2025-09-08T23:03:58,394 ------------------------------------------------------------ 2025-09-08T23:03:58,394 sella/internal/int_classes.pyx:353:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,395 Error compiling Cython file: 2025-09-08T23:03:58,395 ------------------------------------------------------------ 2025-09-08T23:03:58,395 ... 2025-09-08T23:03:58,395 if err != 0: return err 2025-09-08T23:03:58,395 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,395 if err != 0: return err 2025-09-08T23:03:58,395 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,395 if err != 0: return err 2025-09-08T23:03:58,395 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,395 ^ 2025-09-08T23:03:58,395 ------------------------------------------------------------ 2025-09-08T23:03:58,396 sella/internal/int_classes.pyx:353:62: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,396 Error compiling Cython file: 2025-09-08T23:03:58,396 ------------------------------------------------------------ 2025-09-08T23:03:58,396 ... 2025-09-08T23:03:58,396 if err != 0: return err 2025-09-08T23:03:58,396 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,396 if err != 0: return err 2025-09-08T23:03:58,396 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,396 if err != 0: return err 2025-09-08T23:03:58,396 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,396 ^ 2025-09-08T23:03:58,396 ------------------------------------------------------------ 2025-09-08T23:03:58,397 sella/internal/int_classes.pyx:353:72: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,397 Error compiling Cython file: 2025-09-08T23:03:58,397 ------------------------------------------------------------ 2025-09-08T23:03:58,397 ... 2025-09-08T23:03:58,397 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,397 if err != 0: return err 2025-09-08T23:03:58,397 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,397 if err != 0: return err 2025-09-08T23:03:58,397 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,397 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,398 ^ 2025-09-08T23:03:58,398 ------------------------------------------------------------ 2025-09-08T23:03:58,398 sella/internal/int_classes.pyx:354:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,398 Error compiling Cython file: 2025-09-08T23:03:58,398 ------------------------------------------------------------ 2025-09-08T23:03:58,398 ... 2025-09-08T23:03:58,398 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,398 if err != 0: return err 2025-09-08T23:03:58,398 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,399 if err != 0: return err 2025-09-08T23:03:58,399 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,399 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,399 ^ 2025-09-08T23:03:58,399 ------------------------------------------------------------ 2025-09-08T23:03:58,399 sella/internal/int_classes.pyx:354:44: Indexing Python object not allowed without gil 2025-09-08T23:03:58,399 Error compiling Cython file: 2025-09-08T23:03:58,399 ------------------------------------------------------------ 2025-09-08T23:03:58,399 ... 2025-09-08T23:03:58,399 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,400 if err != 0: return err 2025-09-08T23:03:58,400 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,400 if err != 0: return err 2025-09-08T23:03:58,400 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,400 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,400 ^ 2025-09-08T23:03:58,400 ------------------------------------------------------------ 2025-09-08T23:03:58,400 sella/internal/int_classes.pyx:354:41: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,400 Error compiling Cython file: 2025-09-08T23:03:58,400 ------------------------------------------------------------ 2025-09-08T23:03:58,401 ... 2025-09-08T23:03:58,401 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,401 if err != 0: return err 2025-09-08T23:03:58,401 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,401 if err != 0: return err 2025-09-08T23:03:58,401 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,401 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,401 ^ 2025-09-08T23:03:58,401 ------------------------------------------------------------ 2025-09-08T23:03:58,401 sella/internal/int_classes.pyx:354:60: Indexing Python object not allowed without gil 2025-09-08T23:03:58,401 Error compiling Cython file: 2025-09-08T23:03:58,402 ------------------------------------------------------------ 2025-09-08T23:03:58,402 ... 2025-09-08T23:03:58,402 err = vec_sum(self.pos[k], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,402 if err != 0: return err 2025-09-08T23:03:58,402 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,402 if err != 0: return err 2025-09-08T23:03:58,402 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,402 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,402 ^ 2025-09-08T23:03:58,402 ------------------------------------------------------------ 2025-09-08T23:03:58,403 sella/internal/int_classes.pyx:354:57: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,403 Error compiling Cython file: 2025-09-08T23:03:58,403 ------------------------------------------------------------ 2025-09-08T23:03:58,403 ... 2025-09-08T23:03:58,403 if err != 0: return err 2025-09-08T23:03:58,403 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,403 if err != 0: return err 2025-09-08T23:03:58,403 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,403 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,403 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,403 ^ 2025-09-08T23:03:58,403 ------------------------------------------------------------ 2025-09-08T23:03:58,404 sella/internal/int_classes.pyx:355:54: Indexing Python object not allowed without gil 2025-09-08T23:03:58,404 Error compiling Cython file: 2025-09-08T23:03:58,404 ------------------------------------------------------------ 2025-09-08T23:03:58,404 ... 2025-09-08T23:03:58,404 if err != 0: return err 2025-09-08T23:03:58,404 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,404 if err != 0: return err 2025-09-08T23:03:58,404 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,404 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,404 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,405 ^ 2025-09-08T23:03:58,405 ------------------------------------------------------------ 2025-09-08T23:03:58,405 sella/internal/int_classes.pyx:355:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,405 Error compiling Cython file: 2025-09-08T23:03:58,405 ------------------------------------------------------------ 2025-09-08T23:03:58,405 ... 2025-09-08T23:03:58,405 if err != 0: return err 2025-09-08T23:03:58,405 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,405 if err != 0: return err 2025-09-08T23:03:58,405 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,405 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,406 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,406 ^ 2025-09-08T23:03:58,406 ------------------------------------------------------------ 2025-09-08T23:03:58,406 sella/internal/int_classes.pyx:355:63: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,406 Error compiling Cython file: 2025-09-08T23:03:58,406 ------------------------------------------------------------ 2025-09-08T23:03:58,406 ... 2025-09-08T23:03:58,406 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,406 if err != 0: return err 2025-09-08T23:03:58,406 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,407 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,407 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,407 grad, curv) 2025-09-08T23:03:58,407 ^ 2025-09-08T23:03:58,407 ------------------------------------------------------------ 2025-09-08T23:03:58,407 sella/internal/int_classes.pyx:356:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,407 Error compiling Cython file: 2025-09-08T23:03:58,407 ------------------------------------------------------------ 2025-09-08T23:03:58,407 ... 2025-09-08T23:03:58,407 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,408 if err != 0: return err 2025-09-08T23:03:58,408 info = cart_to_dihedral(i, j, k, l, self.dx1, self.dx2, self.dx3, 2025-09-08T23:03:58,408 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,408 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,408 grad, curv) 2025-09-08T23:03:58,408 ^ 2025-09-08T23:03:58,408 ------------------------------------------------------------ 2025-09-08T23:03:58,408 sella/internal/int_classes.pyx:356:42: Converting to Python object not allowed without gil 2025-09-08T23:03:58,408 Error compiling Cython file: 2025-09-08T23:03:58,408 ------------------------------------------------------------ 2025-09-08T23:03:58,408 ... 2025-09-08T23:03:58,409 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,409 grad, curv) 2025-09-08T23:03:58,409 if info < 0: 2025-09-08T23:03:58,409 return info 2025-09-08T23:03:58,409 m += self.ndihedrals 2025-09-08T23:03:58,409 ^ 2025-09-08T23:03:58,409 ------------------------------------------------------------ 2025-09-08T23:03:58,409 sella/internal/int_classes.pyx:360:8: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,409 Error compiling Cython file: 2025-09-08T23:03:58,410 ------------------------------------------------------------ 2025-09-08T23:03:58,410 ... 2025-09-08T23:03:58,410 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,410 grad, curv) 2025-09-08T23:03:58,410 if info < 0: 2025-09-08T23:03:58,410 return info 2025-09-08T23:03:58,410 m += self.ndihedrals 2025-09-08T23:03:58,410 ^ 2025-09-08T23:03:58,410 ------------------------------------------------------------ 2025-09-08T23:03:58,410 sella/internal/int_classes.pyx:360:8: Operation not allowed without gil 2025-09-08T23:03:58,411 Error compiling Cython file: 2025-09-08T23:03:58,411 ------------------------------------------------------------ 2025-09-08T23:03:58,411 ... 2025-09-08T23:03:58,411 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,411 grad, curv) 2025-09-08T23:03:58,411 if info < 0: 2025-09-08T23:03:58,411 return info 2025-09-08T23:03:58,411 m += self.ndihedrals 2025-09-08T23:03:58,411 ^ 2025-09-08T23:03:58,411 ------------------------------------------------------------ 2025-09-08T23:03:58,411 sella/internal/int_classes.pyx:360:8: Converting to Python object not allowed without gil 2025-09-08T23:03:58,412 Error compiling Cython file: 2025-09-08T23:03:58,412 ------------------------------------------------------------ 2025-09-08T23:03:58,412 ... 2025-09-08T23:03:58,412 self.d2q_dihedrals[n], self.work1, 2025-09-08T23:03:58,412 grad, curv) 2025-09-08T23:03:58,412 if info < 0: 2025-09-08T23:03:58,412 return info 2025-09-08T23:03:58,412 m += self.ndihedrals 2025-09-08T23:03:58,412 ^ 2025-09-08T23:03:58,412 ------------------------------------------------------------ 2025-09-08T23:03:58,413 sella/internal/int_classes.pyx:360:17: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,413 Error compiling Cython file: 2025-09-08T23:03:58,413 ------------------------------------------------------------ 2025-09-08T23:03:58,413 ... 2025-09-08T23:03:58,413 grad, curv) 2025-09-08T23:03:58,413 if info < 0: 2025-09-08T23:03:58,413 return info 2025-09-08T23:03:58,413 m += self.ndihedrals 2025-09-08T23:03:58,413 for n in range(self.nangle_sums): 2025-09-08T23:03:58,414 ^ 2025-09-08T23:03:58,414 ------------------------------------------------------------ 2025-09-08T23:03:58,414 sella/internal/int_classes.pyx:361:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,414 Error compiling Cython file: 2025-09-08T23:03:58,414 ------------------------------------------------------------ 2025-09-08T23:03:58,414 ... 2025-09-08T23:03:58,414 grad, curv) 2025-09-08T23:03:58,414 if info < 0: 2025-09-08T23:03:58,414 return info 2025-09-08T23:03:58,415 m += self.ndihedrals 2025-09-08T23:03:58,415 for n in range(self.nangle_sums): 2025-09-08T23:03:58,415 ^ 2025-09-08T23:03:58,415 ------------------------------------------------------------ 2025-09-08T23:03:58,415 sella/internal/int_classes.pyx:361:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,415 Error compiling Cython file: 2025-09-08T23:03:58,415 ------------------------------------------------------------ 2025-09-08T23:03:58,415 ... 2025-09-08T23:03:58,415 if info < 0: 2025-09-08T23:03:58,416 return info 2025-09-08T23:03:58,416 m += self.ndihedrals 2025-09-08T23:03:58,416 for n in range(self.nangle_sums): 2025-09-08T23:03:58,416 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,416 ^ 2025-09-08T23:03:58,416 ------------------------------------------------------------ 2025-09-08T23:03:58,416 sella/internal/int_classes.pyx:362:55: Indexing Python object not allowed without gil 2025-09-08T23:03:58,416 Error compiling Cython file: 2025-09-08T23:03:58,416 ------------------------------------------------------------ 2025-09-08T23:03:58,416 ... 2025-09-08T23:03:58,417 if info < 0: 2025-09-08T23:03:58,417 return info 2025-09-08T23:03:58,417 m += self.ndihedrals 2025-09-08T23:03:58,417 for n in range(self.nangle_sums): 2025-09-08T23:03:58,417 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,417 ^ 2025-09-08T23:03:58,417 ------------------------------------------------------------ 2025-09-08T23:03:58,417 sella/internal/int_classes.pyx:362:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,417 Error compiling Cython file: 2025-09-08T23:03:58,418 ------------------------------------------------------------ 2025-09-08T23:03:58,418 ... 2025-09-08T23:03:58,418 return info 2025-09-08T23:03:58,418 m += self.ndihedrals 2025-09-08T23:03:58,418 for n in range(self.nangle_sums): 2025-09-08T23:03:58,418 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,418 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,418 ^ 2025-09-08T23:03:58,418 ------------------------------------------------------------ 2025-09-08T23:03:58,418 sella/internal/int_classes.pyx:363:48: Indexing Python object not allowed without gil 2025-09-08T23:03:58,419 Error compiling Cython file: 2025-09-08T23:03:58,419 ------------------------------------------------------------ 2025-09-08T23:03:58,419 ... 2025-09-08T23:03:58,419 return info 2025-09-08T23:03:58,419 m += self.ndihedrals 2025-09-08T23:03:58,419 for n in range(self.nangle_sums): 2025-09-08T23:03:58,419 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,419 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,419 ^ 2025-09-08T23:03:58,419 ------------------------------------------------------------ 2025-09-08T23:03:58,420 sella/internal/int_classes.pyx:363:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,420 Error compiling Cython file: 2025-09-08T23:03:58,420 ------------------------------------------------------------ 2025-09-08T23:03:58,420 ... 2025-09-08T23:03:58,420 return info 2025-09-08T23:03:58,420 m += self.ndihedrals 2025-09-08T23:03:58,420 for n in range(self.nangle_sums): 2025-09-08T23:03:58,420 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,420 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,420 ^ 2025-09-08T23:03:58,421 ------------------------------------------------------------ 2025-09-08T23:03:58,421 sella/internal/int_classes.pyx:363:64: Indexing Python object not allowed without gil 2025-09-08T23:03:58,421 Error compiling Cython file: 2025-09-08T23:03:58,421 ------------------------------------------------------------ 2025-09-08T23:03:58,421 ... 2025-09-08T23:03:58,421 return info 2025-09-08T23:03:58,421 m += self.ndihedrals 2025-09-08T23:03:58,421 for n in range(self.nangle_sums): 2025-09-08T23:03:58,421 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,421 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,422 ^ 2025-09-08T23:03:58,422 ------------------------------------------------------------ 2025-09-08T23:03:58,422 sella/internal/int_classes.pyx:363:61: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,422 Error compiling Cython file: 2025-09-08T23:03:58,422 ------------------------------------------------------------ 2025-09-08T23:03:58,422 ... 2025-09-08T23:03:58,422 m += self.ndihedrals 2025-09-08T23:03:58,422 for n in range(self.nangle_sums): 2025-09-08T23:03:58,422 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,423 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,423 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,423 ^ 2025-09-08T23:03:58,423 ------------------------------------------------------------ 2025-09-08T23:03:58,423 sella/internal/int_classes.pyx:364:59: Indexing Python object not allowed without gil 2025-09-08T23:03:58,423 Error compiling Cython file: 2025-09-08T23:03:58,423 ------------------------------------------------------------ 2025-09-08T23:03:58,423 ... 2025-09-08T23:03:58,423 m += self.ndihedrals 2025-09-08T23:03:58,424 for n in range(self.nangle_sums): 2025-09-08T23:03:58,424 info = self._angle_sum_diff(self.angle_sums[n], 1., 2025-09-08T23:03:58,424 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,424 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,424 ^ 2025-09-08T23:03:58,424 ------------------------------------------------------------ 2025-09-08T23:03:58,424 sella/internal/int_classes.pyx:364:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,424 Error compiling Cython file: 2025-09-08T23:03:58,424 ------------------------------------------------------------ 2025-09-08T23:03:58,424 ... 2025-09-08T23:03:58,424 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,425 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,425 if info < 0: 2025-09-08T23:03:58,425 return info 2025-09-08T23:03:58,425 m += self.nangle_sums 2025-09-08T23:03:58,425 ^ 2025-09-08T23:03:58,425 ------------------------------------------------------------ 2025-09-08T23:03:58,425 sella/internal/int_classes.pyx:368:8: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,425 Error compiling Cython file: 2025-09-08T23:03:58,425 ------------------------------------------------------------ 2025-09-08T23:03:58,426 ... 2025-09-08T23:03:58,426 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,426 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,426 if info < 0: 2025-09-08T23:03:58,426 return info 2025-09-08T23:03:58,426 m += self.nangle_sums 2025-09-08T23:03:58,426 ^ 2025-09-08T23:03:58,426 ------------------------------------------------------------ 2025-09-08T23:03:58,426 sella/internal/int_classes.pyx:368:8: Operation not allowed without gil 2025-09-08T23:03:58,427 Error compiling Cython file: 2025-09-08T23:03:58,427 ------------------------------------------------------------ 2025-09-08T23:03:58,427 ... 2025-09-08T23:03:58,427 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,427 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,427 if info < 0: 2025-09-08T23:03:58,427 return info 2025-09-08T23:03:58,427 m += self.nangle_sums 2025-09-08T23:03:58,427 ^ 2025-09-08T23:03:58,427 ------------------------------------------------------------ 2025-09-08T23:03:58,427 sella/internal/int_classes.pyx:368:8: Converting to Python object not allowed without gil 2025-09-08T23:03:58,428 Error compiling Cython file: 2025-09-08T23:03:58,428 ------------------------------------------------------------ 2025-09-08T23:03:58,428 ... 2025-09-08T23:03:58,428 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,428 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,428 if info < 0: 2025-09-08T23:03:58,428 return info 2025-09-08T23:03:58,428 m += self.nangle_sums 2025-09-08T23:03:58,428 ^ 2025-09-08T23:03:58,428 ------------------------------------------------------------ 2025-09-08T23:03:58,429 sella/internal/int_classes.pyx:368:17: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,429 Error compiling Cython file: 2025-09-08T23:03:58,429 ------------------------------------------------------------ 2025-09-08T23:03:58,429 ... 2025-09-08T23:03:58,429 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,429 if info < 0: 2025-09-08T23:03:58,429 return info 2025-09-08T23:03:58,429 m += self.nangle_sums 2025-09-08T23:03:58,429 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,430 ^ 2025-09-08T23:03:58,430 ------------------------------------------------------------ 2025-09-08T23:03:58,430 sella/internal/int_classes.pyx:369:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,430 Error compiling Cython file: 2025-09-08T23:03:58,430 ------------------------------------------------------------ 2025-09-08T23:03:58,430 ... 2025-09-08T23:03:58,430 self.d2q_angle_sums[n], grad, curv) 2025-09-08T23:03:58,430 if info < 0: 2025-09-08T23:03:58,430 return info 2025-09-08T23:03:58,430 m += self.nangle_sums 2025-09-08T23:03:58,431 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,431 ^ 2025-09-08T23:03:58,431 ------------------------------------------------------------ 2025-09-08T23:03:58,431 sella/internal/int_classes.pyx:369:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,431 Error compiling Cython file: 2025-09-08T23:03:58,431 ------------------------------------------------------------ 2025-09-08T23:03:58,431 ... 2025-09-08T23:03:58,431 if info < 0: 2025-09-08T23:03:58,431 return info 2025-09-08T23:03:58,432 m += self.nangle_sums 2025-09-08T23:03:58,432 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,432 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,432 ^ 2025-09-08T23:03:58,432 ------------------------------------------------------------ 2025-09-08T23:03:58,432 sella/internal/int_classes.pyx:370:56: Indexing Python object not allowed without gil 2025-09-08T23:03:58,432 Error compiling Cython file: 2025-09-08T23:03:58,432 ------------------------------------------------------------ 2025-09-08T23:03:58,432 ... 2025-09-08T23:03:58,433 if info < 0: 2025-09-08T23:03:58,433 return info 2025-09-08T23:03:58,433 m += self.nangle_sums 2025-09-08T23:03:58,433 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,433 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,433 ^ 2025-09-08T23:03:58,433 ------------------------------------------------------------ 2025-09-08T23:03:58,433 sella/internal/int_classes.pyx:370:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,433 Error compiling Cython file: 2025-09-08T23:03:58,434 ------------------------------------------------------------ 2025-09-08T23:03:58,434 ... 2025-09-08T23:03:58,434 return info 2025-09-08T23:03:58,434 m += self.nangle_sums 2025-09-08T23:03:58,434 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,434 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,434 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,434 ^ 2025-09-08T23:03:58,434 ------------------------------------------------------------ 2025-09-08T23:03:58,434 sella/internal/int_classes.pyx:371:48: Indexing Python object not allowed without gil 2025-09-08T23:03:58,435 Error compiling Cython file: 2025-09-08T23:03:58,435 ------------------------------------------------------------ 2025-09-08T23:03:58,435 ... 2025-09-08T23:03:58,435 return info 2025-09-08T23:03:58,435 m += self.nangle_sums 2025-09-08T23:03:58,435 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,435 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,435 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,435 ^ 2025-09-08T23:03:58,435 ------------------------------------------------------------ 2025-09-08T23:03:58,436 sella/internal/int_classes.pyx:371:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,436 Error compiling Cython file: 2025-09-08T23:03:58,436 ------------------------------------------------------------ 2025-09-08T23:03:58,436 ... 2025-09-08T23:03:58,436 return info 2025-09-08T23:03:58,436 m += self.nangle_sums 2025-09-08T23:03:58,436 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,436 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,436 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,436 ^ 2025-09-08T23:03:58,437 ------------------------------------------------------------ 2025-09-08T23:03:58,437 sella/internal/int_classes.pyx:371:64: Indexing Python object not allowed without gil 2025-09-08T23:03:58,437 Error compiling Cython file: 2025-09-08T23:03:58,437 ------------------------------------------------------------ 2025-09-08T23:03:58,437 ... 2025-09-08T23:03:58,437 return info 2025-09-08T23:03:58,437 m += self.nangle_sums 2025-09-08T23:03:58,437 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,437 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,438 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,438 ^ 2025-09-08T23:03:58,438 ------------------------------------------------------------ 2025-09-08T23:03:58,438 sella/internal/int_classes.pyx:371:61: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,438 Error compiling Cython file: 2025-09-08T23:03:58,438 ------------------------------------------------------------ 2025-09-08T23:03:58,438 ... 2025-09-08T23:03:58,438 m += self.nangle_sums 2025-09-08T23:03:58,438 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,438 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,439 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,439 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:58,439 ^ 2025-09-08T23:03:58,439 ------------------------------------------------------------ 2025-09-08T23:03:58,439 sella/internal/int_classes.pyx:372:60: Indexing Python object not allowed without gil 2025-09-08T23:03:58,439 Error compiling Cython file: 2025-09-08T23:03:58,439 ------------------------------------------------------------ 2025-09-08T23:03:58,439 ... 2025-09-08T23:03:58,439 m += self.nangle_sums 2025-09-08T23:03:58,440 for n in range(self.nangle_diffs): 2025-09-08T23:03:58,440 info = self._angle_sum_diff(self.angle_diffs[n], -1., 2025-09-08T23:03:58,440 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,440 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:58,440 ^ 2025-09-08T23:03:58,440 ------------------------------------------------------------ 2025-09-08T23:03:58,440 sella/internal/int_classes.pyx:372:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,440 Error compiling Cython file: 2025-09-08T23:03:58,440 ------------------------------------------------------------ 2025-09-08T23:03:58,440 ... 2025-09-08T23:03:58,441 &self.q1[m + n], self.dq[m + n], 2025-09-08T23:03:58,441 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:58,441 if info < 0: 2025-09-08T23:03:58,441 return info 2025-09-08T23:03:58,441 self.calc_required = False 2025-09-08T23:03:58,441 ^ 2025-09-08T23:03:58,441 ------------------------------------------------------------ 2025-09-08T23:03:58,441 sella/internal/int_classes.pyx:376:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,441 Error compiling Cython file: 2025-09-08T23:03:58,442 ------------------------------------------------------------ 2025-09-08T23:03:58,442 ... 2025-09-08T23:03:58,442 self.d2q_angle_diffs[n], grad, curv) 2025-09-08T23:03:58,442 if info < 0: 2025-09-08T23:03:58,442 return info 2025-09-08T23:03:58,442 self.calc_required = False 2025-09-08T23:03:58,442 self.nint = -1 2025-09-08T23:03:58,442 ^ 2025-09-08T23:03:58,442 ------------------------------------------------------------ 2025-09-08T23:03:58,442 sella/internal/int_classes.pyx:377:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,443 Error compiling Cython file: 2025-09-08T23:03:58,443 ------------------------------------------------------------ 2025-09-08T23:03:58,443 ... 2025-09-08T23:03:58,443 self.calc_required = False 2025-09-08T23:03:58,443 self.nint = -1 2025-09-08T23:03:58,443 return 0 2025-09-08T23:03:58,443 cdef int _U_update(CartToInternal self, 2025-09-08T23:03:58,443 ^ 2025-09-08T23:03:58,443 ------------------------------------------------------------ 2025-09-08T23:03:58,444 sella/internal/int_classes.pyx:380:4: Function declared nogil has Python locals or temporaries 2025-09-08T23:03:58,444 Error compiling Cython file: 2025-09-08T23:03:58,444 ------------------------------------------------------------ 2025-09-08T23:03:58,444 ... 2025-09-08T23:03:58,444 bint force=False) nogil except -1: 2025-09-08T23:03:58,444 cdef int err = self._update(pos, dummypos, True, False, force) 2025-09-08T23:03:58,444 if err != 0: 2025-09-08T23:03:58,444 return err 2025-09-08T23:03:58,444 if self.nint > 0: 2025-09-08T23:03:58,444 ^ 2025-09-08T23:03:58,445 ------------------------------------------------------------ 2025-09-08T23:03:58,445 sella/internal/int_classes.pyx:388:21: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,445 Error compiling Cython file: 2025-09-08T23:03:58,445 ------------------------------------------------------------ 2025-09-08T23:03:58,445 ... 2025-09-08T23:03:58,445 bint force=False) nogil except -1: 2025-09-08T23:03:58,445 cdef int err = self._update(pos, dummypos, True, False, force) 2025-09-08T23:03:58,445 if err != 0: 2025-09-08T23:03:58,445 return err 2025-09-08T23:03:58,446 if self.nint > 0: 2025-09-08T23:03:58,446 ^ 2025-09-08T23:03:58,446 ------------------------------------------------------------ 2025-09-08T23:03:58,446 sella/internal/int_classes.pyx:388:21: Operation not allowed without gil 2025-09-08T23:03:58,446 Error compiling Cython file: 2025-09-08T23:03:58,446 ------------------------------------------------------------ 2025-09-08T23:03:58,446 ... 2025-09-08T23:03:58,446 bint force=False) nogil except -1: 2025-09-08T23:03:58,446 cdef int err = self._update(pos, dummypos, True, False, force) 2025-09-08T23:03:58,446 if err != 0: 2025-09-08T23:03:58,446 return err 2025-09-08T23:03:58,447 if self.nint > 0: 2025-09-08T23:03:58,447 ^ 2025-09-08T23:03:58,447 ------------------------------------------------------------ 2025-09-08T23:03:58,447 sella/internal/int_classes.pyx:388:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,447 Error compiling Cython file: 2025-09-08T23:03:58,447 ------------------------------------------------------------ 2025-09-08T23:03:58,447 ... 2025-09-08T23:03:58,447 return err 2025-09-08T23:03:58,448 if self.nint > 0: 2025-09-08T23:03:58,448 return 0 2025-09-08T23:03:58,448 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,448 ^ 2025-09-08T23:03:58,448 ------------------------------------------------------------ 2025-09-08T23:03:58,448 sella/internal/int_classes.pyx:391:43: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,448 Error compiling Cython file: 2025-09-08T23:03:58,448 ------------------------------------------------------------ 2025-09-08T23:03:58,448 ... 2025-09-08T23:03:58,448 return err 2025-09-08T23:03:58,449 if self.nint > 0: 2025-09-08T23:03:58,449 return 0 2025-09-08T23:03:58,449 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,449 ^ 2025-09-08T23:03:58,449 ------------------------------------------------------------ 2025-09-08T23:03:58,449 sella/internal/int_classes.pyx:391:43: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,449 Error compiling Cython file: 2025-09-08T23:03:58,449 ------------------------------------------------------------ 2025-09-08T23:03:58,450 ... 2025-09-08T23:03:58,450 return err 2025-09-08T23:03:58,450 if self.nint > 0: 2025-09-08T23:03:58,450 return 0 2025-09-08T23:03:58,450 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,450 ^ 2025-09-08T23:03:58,450 ------------------------------------------------------------ 2025-09-08T23:03:58,450 sella/internal/int_classes.pyx:391:39: Indexing Python object not allowed without gil 2025-09-08T23:03:58,451 Error compiling Cython file: 2025-09-08T23:03:58,451 ------------------------------------------------------------ 2025-09-08T23:03:58,451 ... 2025-09-08T23:03:58,451 return err 2025-09-08T23:03:58,451 if self.nint > 0: 2025-09-08T23:03:58,451 return 0 2025-09-08T23:03:58,451 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,451 ^ 2025-09-08T23:03:58,451 ------------------------------------------------------------ 2025-09-08T23:03:58,451 sella/internal/int_classes.pyx:391:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,452 Error compiling Cython file: 2025-09-08T23:03:58,452 ------------------------------------------------------------ 2025-09-08T23:03:58,452 ... 2025-09-08T23:03:58,452 return err 2025-09-08T23:03:58,452 if self.nint > 0: 2025-09-08T23:03:58,452 return 0 2025-09-08T23:03:58,452 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,452 ^ 2025-09-08T23:03:58,453 ------------------------------------------------------------ 2025-09-08T23:03:58,453 sella/internal/int_classes.pyx:391:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,453 Error compiling Cython file: 2025-09-08T23:03:58,453 ------------------------------------------------------------ 2025-09-08T23:03:58,453 ... 2025-09-08T23:03:58,453 if self.nint > 0: 2025-09-08T23:03:58,453 return 0 2025-09-08T23:03:58,453 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,454 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,454 ^ 2025-09-08T23:03:58,454 ------------------------------------------------------------ 2025-09-08T23:03:58,454 sella/internal/int_classes.pyx:392:44: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,454 Error compiling Cython file: 2025-09-08T23:03:58,454 ------------------------------------------------------------ 2025-09-08T23:03:58,454 ... 2025-09-08T23:03:58,454 if self.nint > 0: 2025-09-08T23:03:58,454 return 0 2025-09-08T23:03:58,455 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,455 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,455 ^ 2025-09-08T23:03:58,455 ------------------------------------------------------------ 2025-09-08T23:03:58,455 sella/internal/int_classes.pyx:392:44: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,455 Error compiling Cython file: 2025-09-08T23:03:58,455 ------------------------------------------------------------ 2025-09-08T23:03:58,455 ... 2025-09-08T23:03:58,456 if self.nint > 0: 2025-09-08T23:03:58,456 return 0 2025-09-08T23:03:58,456 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,456 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,456 ^ 2025-09-08T23:03:58,456 ------------------------------------------------------------ 2025-09-08T23:03:58,456 sella/internal/int_classes.pyx:392:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,456 Error compiling Cython file: 2025-09-08T23:03:58,456 ------------------------------------------------------------ 2025-09-08T23:03:58,456 ... 2025-09-08T23:03:58,457 if self.nint > 0: 2025-09-08T23:03:58,457 return 0 2025-09-08T23:03:58,457 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,457 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,457 ^ 2025-09-08T23:03:58,457 ------------------------------------------------------------ 2025-09-08T23:03:58,457 sella/internal/int_classes.pyx:392:32: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,457 Error compiling Cython file: 2025-09-08T23:03:58,458 ------------------------------------------------------------ 2025-09-08T23:03:58,458 ... 2025-09-08T23:03:58,458 if self.nint > 0: 2025-09-08T23:03:58,458 return 0 2025-09-08T23:03:58,458 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,458 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,458 ^ 2025-09-08T23:03:58,458 ------------------------------------------------------------ 2025-09-08T23:03:58,458 sella/internal/int_classes.pyx:392:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,459 Error compiling Cython file: 2025-09-08T23:03:58,459 ------------------------------------------------------------ 2025-09-08T23:03:58,459 ... 2025-09-08T23:03:58,459 if self.nint > 0: 2025-09-08T23:03:58,459 return 0 2025-09-08T23:03:58,459 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,459 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,459 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,459 ^ 2025-09-08T23:03:58,459 ------------------------------------------------------------ 2025-09-08T23:03:58,460 sella/internal/int_classes.pyx:393:25: Indexing Python object not allowed without gil 2025-09-08T23:03:58,460 Error compiling Cython file: 2025-09-08T23:03:58,460 ------------------------------------------------------------ 2025-09-08T23:03:58,460 ... 2025-09-08T23:03:58,460 if self.nint > 0: 2025-09-08T23:03:58,460 return 0 2025-09-08T23:03:58,460 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,460 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,460 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,460 ^ 2025-09-08T23:03:58,460 ------------------------------------------------------------ 2025-09-08T23:03:58,461 sella/internal/int_classes.pyx:393:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,461 Error compiling Cython file: 2025-09-08T23:03:58,461 ------------------------------------------------------------ 2025-09-08T23:03:58,461 ... 2025-09-08T23:03:58,461 if self.nint > 0: 2025-09-08T23:03:58,461 return 0 2025-09-08T23:03:58,461 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,461 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,461 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,462 ^ 2025-09-08T23:03:58,462 ------------------------------------------------------------ 2025-09-08T23:03:58,462 sella/internal/int_classes.pyx:393:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,462 Error compiling Cython file: 2025-09-08T23:03:58,462 ------------------------------------------------------------ 2025-09-08T23:03:58,462 ... 2025-09-08T23:03:58,462 if self.nint > 0: 2025-09-08T23:03:58,462 return 0 2025-09-08T23:03:58,462 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,463 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,463 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,463 ^ 2025-09-08T23:03:58,463 ------------------------------------------------------------ 2025-09-08T23:03:58,463 sella/internal/int_classes.pyx:393:58: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,463 Error compiling Cython file: 2025-09-08T23:03:58,463 ------------------------------------------------------------ 2025-09-08T23:03:58,463 ... 2025-09-08T23:03:58,463 if self.nint > 0: 2025-09-08T23:03:58,463 return 0 2025-09-08T23:03:58,464 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,464 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,464 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,464 ^ 2025-09-08T23:03:58,464 ------------------------------------------------------------ 2025-09-08T23:03:58,464 sella/internal/int_classes.pyx:393:58: Operation not allowed without gil 2025-09-08T23:03:58,464 Error compiling Cython file: 2025-09-08T23:03:58,464 ------------------------------------------------------------ 2025-09-08T23:03:58,464 ... 2025-09-08T23:03:58,464 if self.nint > 0: 2025-09-08T23:03:58,464 return 0 2025-09-08T23:03:58,465 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,465 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,465 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,465 ^ 2025-09-08T23:03:58,465 ------------------------------------------------------------ 2025-09-08T23:03:58,465 sella/internal/int_classes.pyx:393:46: Operation not allowed without gil 2025-09-08T23:03:58,465 Error compiling Cython file: 2025-09-08T23:03:58,465 ------------------------------------------------------------ 2025-09-08T23:03:58,465 ... 2025-09-08T23:03:58,466 if self.nint > 0: 2025-09-08T23:03:58,466 return 0 2025-09-08T23:03:58,466 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,466 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,466 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,466 ^ 2025-09-08T23:03:58,466 ------------------------------------------------------------ 2025-09-08T23:03:58,466 sella/internal/int_classes.pyx:393:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,466 Error compiling Cython file: 2025-09-08T23:03:58,467 ------------------------------------------------------------ 2025-09-08T23:03:58,467 ... 2025-09-08T23:03:58,467 if self.nint > 0: 2025-09-08T23:03:58,467 return 0 2025-09-08T23:03:58,467 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,467 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,467 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,467 ^ 2025-09-08T23:03:58,467 ------------------------------------------------------------ 2025-09-08T23:03:58,467 sella/internal/int_classes.pyx:393:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,468 Error compiling Cython file: 2025-09-08T23:03:58,468 ------------------------------------------------------------ 2025-09-08T23:03:58,468 ... 2025-09-08T23:03:58,468 if self.nint > 0: 2025-09-08T23:03:58,468 return 0 2025-09-08T23:03:58,468 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,468 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,468 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,468 ^ 2025-09-08T23:03:58,468 ------------------------------------------------------------ 2025-09-08T23:03:58,469 sella/internal/int_classes.pyx:393:60: Converting to Python object not allowed without gil 2025-09-08T23:03:58,469 Error compiling Cython file: 2025-09-08T23:03:58,469 ------------------------------------------------------------ 2025-09-08T23:03:58,469 ... 2025-09-08T23:03:58,469 return 0 2025-09-08T23:03:58,469 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,469 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,469 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,469 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,469 ^ 2025-09-08T23:03:58,469 ------------------------------------------------------------ 2025-09-08T23:03:58,470 sella/internal/int_classes.pyx:394:25: Indexing Python object not allowed without gil 2025-09-08T23:03:58,470 Error compiling Cython file: 2025-09-08T23:03:58,470 ------------------------------------------------------------ 2025-09-08T23:03:58,470 ... 2025-09-08T23:03:58,470 return 0 2025-09-08T23:03:58,470 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,470 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,470 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,470 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,471 ^ 2025-09-08T23:03:58,471 ------------------------------------------------------------ 2025-09-08T23:03:58,471 sella/internal/int_classes.pyx:394:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,471 Error compiling Cython file: 2025-09-08T23:03:58,471 ------------------------------------------------------------ 2025-09-08T23:03:58,471 ... 2025-09-08T23:03:58,471 return 0 2025-09-08T23:03:58,471 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,472 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,472 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,472 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,472 ^ 2025-09-08T23:03:58,472 ------------------------------------------------------------ 2025-09-08T23:03:58,472 sella/internal/int_classes.pyx:394:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,472 Error compiling Cython file: 2025-09-08T23:03:58,472 ------------------------------------------------------------ 2025-09-08T23:03:58,472 ... 2025-09-08T23:03:58,472 return 0 2025-09-08T23:03:58,473 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,473 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,473 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,473 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,473 ^ 2025-09-08T23:03:58,473 ------------------------------------------------------------ 2025-09-08T23:03:58,473 sella/internal/int_classes.pyx:394:58: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,473 Error compiling Cython file: 2025-09-08T23:03:58,473 ------------------------------------------------------------ 2025-09-08T23:03:58,474 ... 2025-09-08T23:03:58,474 return 0 2025-09-08T23:03:58,474 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,474 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,474 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,474 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,474 ^ 2025-09-08T23:03:58,474 ------------------------------------------------------------ 2025-09-08T23:03:58,474 sella/internal/int_classes.pyx:394:58: Operation not allowed without gil 2025-09-08T23:03:58,475 Error compiling Cython file: 2025-09-08T23:03:58,475 ------------------------------------------------------------ 2025-09-08T23:03:58,475 ... 2025-09-08T23:03:58,475 return 0 2025-09-08T23:03:58,475 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,475 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,475 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,475 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,475 ^ 2025-09-08T23:03:58,475 ------------------------------------------------------------ 2025-09-08T23:03:58,475 sella/internal/int_classes.pyx:394:46: Operation not allowed without gil 2025-09-08T23:03:58,476 Error compiling Cython file: 2025-09-08T23:03:58,476 ------------------------------------------------------------ 2025-09-08T23:03:58,476 ... 2025-09-08T23:03:58,476 return 0 2025-09-08T23:03:58,476 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,476 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,476 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,476 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,476 ^ 2025-09-08T23:03:58,476 ------------------------------------------------------------ 2025-09-08T23:03:58,477 sella/internal/int_classes.pyx:394:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,477 Error compiling Cython file: 2025-09-08T23:03:58,477 ------------------------------------------------------------ 2025-09-08T23:03:58,477 ... 2025-09-08T23:03:58,477 return 0 2025-09-08T23:03:58,477 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,477 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,477 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,477 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,477 ^ 2025-09-08T23:03:58,478 ------------------------------------------------------------ 2025-09-08T23:03:58,478 sella/internal/int_classes.pyx:394:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,478 Error compiling Cython file: 2025-09-08T23:03:58,478 ------------------------------------------------------------ 2025-09-08T23:03:58,478 ... 2025-09-08T23:03:58,478 return 0 2025-09-08T23:03:58,478 cdef int sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:58,478 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,478 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,479 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,479 ^ 2025-09-08T23:03:58,479 ------------------------------------------------------------ 2025-09-08T23:03:58,479 sella/internal/int_classes.pyx:394:60: Converting to Python object not allowed without gil 2025-09-08T23:03:58,479 Error compiling Cython file: 2025-09-08T23:03:58,479 ------------------------------------------------------------ 2025-09-08T23:03:58,479 ... 2025-09-08T23:03:58,479 cdef int sdu = self.Uint.strides[1] >> 3 2025-09-08T23:03:58,479 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,479 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,480 cdef int i 2025-09-08T23:03:58,480 if self.nq == 0: 2025-09-08T23:03:58,480 ^ 2025-09-08T23:03:58,480 ------------------------------------------------------------ 2025-09-08T23:03:58,480 sella/internal/int_classes.pyx:397:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,480 Error compiling Cython file: 2025-09-08T23:03:58,480 ------------------------------------------------------------ 2025-09-08T23:03:58,480 ... 2025-09-08T23:03:58,480 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,480 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,481 cdef int i 2025-09-08T23:03:58,481 if self.nq == 0: 2025-09-08T23:03:58,481 for i in range(self.nx): 2025-09-08T23:03:58,481 ^ 2025-09-08T23:03:58,481 ------------------------------------------------------------ 2025-09-08T23:03:58,481 sella/internal/int_classes.pyx:398:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,481 Error compiling Cython file: 2025-09-08T23:03:58,481 ------------------------------------------------------------ 2025-09-08T23:03:58,481 ... 2025-09-08T23:03:58,482 memset(&self.Uint[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,482 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,482 cdef int i 2025-09-08T23:03:58,482 if self.nq == 0: 2025-09-08T23:03:58,482 for i in range(self.nx): 2025-09-08T23:03:58,482 ^ 2025-09-08T23:03:58,482 ------------------------------------------------------------ 2025-09-08T23:03:58,482 sella/internal/int_classes.pyx:398:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,482 Error compiling Cython file: 2025-09-08T23:03:58,483 ------------------------------------------------------------ 2025-09-08T23:03:58,483 ... 2025-09-08T23:03:58,483 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,483 cdef int i 2025-09-08T23:03:58,483 if self.nq == 0: 2025-09-08T23:03:58,483 for i in range(self.nx): 2025-09-08T23:03:58,483 self.Uext[i, i] = 1. 2025-09-08T23:03:58,483 ^ 2025-09-08T23:03:58,483 ------------------------------------------------------------ 2025-09-08T23:03:58,483 sella/internal/int_classes.pyx:399:25: Indexing Python object not allowed without gil 2025-09-08T23:03:58,484 Error compiling Cython file: 2025-09-08T23:03:58,484 ------------------------------------------------------------ 2025-09-08T23:03:58,484 ... 2025-09-08T23:03:58,484 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,484 cdef int i 2025-09-08T23:03:58,484 if self.nq == 0: 2025-09-08T23:03:58,484 for i in range(self.nx): 2025-09-08T23:03:58,484 self.Uext[i, i] = 1. 2025-09-08T23:03:58,484 ^ 2025-09-08T23:03:58,484 ------------------------------------------------------------ 2025-09-08T23:03:58,485 sella/internal/int_classes.pyx:399:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,485 Error compiling Cython file: 2025-09-08T23:03:58,485 ------------------------------------------------------------ 2025-09-08T23:03:58,485 ... 2025-09-08T23:03:58,485 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,485 cdef int i 2025-09-08T23:03:58,485 if self.nq == 0: 2025-09-08T23:03:58,485 for i in range(self.nx): 2025-09-08T23:03:58,485 self.Uext[i, i] = 1. 2025-09-08T23:03:58,485 ^ 2025-09-08T23:03:58,486 ------------------------------------------------------------ 2025-09-08T23:03:58,486 sella/internal/int_classes.pyx:399:25: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,486 Error compiling Cython file: 2025-09-08T23:03:58,486 ------------------------------------------------------------ 2025-09-08T23:03:58,486 ... 2025-09-08T23:03:58,486 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,486 cdef int i 2025-09-08T23:03:58,486 if self.nq == 0: 2025-09-08T23:03:58,486 for i in range(self.nx): 2025-09-08T23:03:58,486 self.Uext[i, i] = 1. 2025-09-08T23:03:58,487 ^ 2025-09-08T23:03:58,487 ------------------------------------------------------------ 2025-09-08T23:03:58,487 sella/internal/int_classes.pyx:399:26: Converting to Python object not allowed without gil 2025-09-08T23:03:58,487 Error compiling Cython file: 2025-09-08T23:03:58,487 ------------------------------------------------------------ 2025-09-08T23:03:58,487 ... 2025-09-08T23:03:58,487 memset(&self.Uext[0, 0], 0, self.nmax * self.nmax * sizeof(double)) 2025-09-08T23:03:58,487 cdef int i 2025-09-08T23:03:58,487 if self.nq == 0: 2025-09-08T23:03:58,488 for i in range(self.nx): 2025-09-08T23:03:58,488 self.Uext[i, i] = 1. 2025-09-08T23:03:58,488 ^ 2025-09-08T23:03:58,488 ------------------------------------------------------------ 2025-09-08T23:03:58,488 sella/internal/int_classes.pyx:399:29: Converting to Python object not allowed without gil 2025-09-08T23:03:58,488 Error compiling Cython file: 2025-09-08T23:03:58,488 ------------------------------------------------------------ 2025-09-08T23:03:58,488 ... 2025-09-08T23:03:58,488 cdef int i 2025-09-08T23:03:58,489 if self.nq == 0: 2025-09-08T23:03:58,489 for i in range(self.nx): 2025-09-08T23:03:58,489 self.Uext[i, i] = 1. 2025-09-08T23:03:58,489 self.nint = 0 2025-09-08T23:03:58,489 ^ 2025-09-08T23:03:58,489 ------------------------------------------------------------ 2025-09-08T23:03:58,489 sella/internal/int_classes.pyx:400:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,489 Error compiling Cython file: 2025-09-08T23:03:58,489 ------------------------------------------------------------ 2025-09-08T23:03:58,489 ... 2025-09-08T23:03:58,490 cdef int i 2025-09-08T23:03:58,490 if self.nq == 0: 2025-09-08T23:03:58,490 for i in range(self.nx): 2025-09-08T23:03:58,490 self.Uext[i, i] = 1. 2025-09-08T23:03:58,490 self.nint = 0 2025-09-08T23:03:58,490 self.next = self.nx 2025-09-08T23:03:58,490 ^ 2025-09-08T23:03:58,490 ------------------------------------------------------------ 2025-09-08T23:03:58,490 sella/internal/int_classes.pyx:401:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,491 Error compiling Cython file: 2025-09-08T23:03:58,491 ------------------------------------------------------------ 2025-09-08T23:03:58,491 ... 2025-09-08T23:03:58,491 cdef int i 2025-09-08T23:03:58,491 if self.nq == 0: 2025-09-08T23:03:58,491 for i in range(self.nx): 2025-09-08T23:03:58,491 self.Uext[i, i] = 1. 2025-09-08T23:03:58,491 self.nint = 0 2025-09-08T23:03:58,491 self.next = self.nx 2025-09-08T23:03:58,491 ^ 2025-09-08T23:03:58,491 ------------------------------------------------------------ 2025-09-08T23:03:58,492 sella/internal/int_classes.pyx:401:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,492 Error compiling Cython file: 2025-09-08T23:03:58,492 ------------------------------------------------------------ 2025-09-08T23:03:58,492 ... 2025-09-08T23:03:58,492 self.Uext[i, i] = 1. 2025-09-08T23:03:58,492 self.nint = 0 2025-09-08T23:03:58,492 self.next = self.nx 2025-09-08T23:03:58,492 return 0 2025-09-08T23:03:58,492 for n in range(self.nq): 2025-09-08T23:03:58,492 ^ 2025-09-08T23:03:58,493 ------------------------------------------------------------ 2025-09-08T23:03:58,493 sella/internal/int_classes.pyx:404:17: Iterating over Python object not allowed without gil 2025-09-08T23:03:58,493 Error compiling Cython file: 2025-09-08T23:03:58,493 ------------------------------------------------------------ 2025-09-08T23:03:58,493 ... 2025-09-08T23:03:58,493 self.Uext[i, i] = 1. 2025-09-08T23:03:58,493 self.nint = 0 2025-09-08T23:03:58,493 self.next = self.nx 2025-09-08T23:03:58,493 return 0 2025-09-08T23:03:58,494 for n in range(self.nq): 2025-09-08T23:03:58,494 ^ 2025-09-08T23:03:58,494 ------------------------------------------------------------ 2025-09-08T23:03:58,494 sella/internal/int_classes.pyx:404:22: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,494 Error compiling Cython file: 2025-09-08T23:03:58,494 ------------------------------------------------------------ 2025-09-08T23:03:58,494 ... 2025-09-08T23:03:58,494 self.Uext[i, i] = 1. 2025-09-08T23:03:58,494 self.nint = 0 2025-09-08T23:03:58,494 self.next = self.nx 2025-09-08T23:03:58,495 return 0 2025-09-08T23:03:58,495 for n in range(self.nq): 2025-09-08T23:03:58,495 ^ 2025-09-08T23:03:58,495 ------------------------------------------------------------ 2025-09-08T23:03:58,495 sella/internal/int_classes.pyx:404:22: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,495 Error compiling Cython file: 2025-09-08T23:03:58,495 ------------------------------------------------------------ 2025-09-08T23:03:58,495 ... 2025-09-08T23:03:58,495 self.Uext[i, i] = 1. 2025-09-08T23:03:58,495 self.nint = 0 2025-09-08T23:03:58,496 self.next = self.nx 2025-09-08T23:03:58,496 return 0 2025-09-08T23:03:58,496 for n in range(self.nq): 2025-09-08T23:03:58,496 ^ 2025-09-08T23:03:58,496 ------------------------------------------------------------ 2025-09-08T23:03:58,496 sella/internal/int_classes.pyx:404:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,496 Error compiling Cython file: 2025-09-08T23:03:58,496 ------------------------------------------------------------ 2025-09-08T23:03:58,496 ... 2025-09-08T23:03:58,497 self.nint = 0 2025-09-08T23:03:58,497 self.next = self.nx 2025-09-08T23:03:58,497 return 0 2025-09-08T23:03:58,497 for n in range(self.nq): 2025-09-08T23:03:58,497 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,497 ^ 2025-09-08T23:03:58,497 ------------------------------------------------------------ 2025-09-08T23:03:58,497 sella/internal/int_classes.pyx:405:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,497 Error compiling Cython file: 2025-09-08T23:03:58,498 ------------------------------------------------------------ 2025-09-08T23:03:58,498 ... 2025-09-08T23:03:58,498 self.nint = 0 2025-09-08T23:03:58,498 self.next = self.nx 2025-09-08T23:03:58,498 return 0 2025-09-08T23:03:58,498 for n in range(self.nq): 2025-09-08T23:03:58,498 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,498 ^ 2025-09-08T23:03:58,498 ------------------------------------------------------------ 2025-09-08T23:03:58,498 sella/internal/int_classes.pyx:405:36: Indexing Python object not allowed without gil 2025-09-08T23:03:58,499 Error compiling Cython file: 2025-09-08T23:03:58,499 ------------------------------------------------------------ 2025-09-08T23:03:58,499 ... 2025-09-08T23:03:58,499 self.nint = 0 2025-09-08T23:03:58,499 self.next = self.nx 2025-09-08T23:03:58,499 return 0 2025-09-08T23:03:58,499 for n in range(self.nq): 2025-09-08T23:03:58,499 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,499 ^ 2025-09-08T23:03:58,499 ------------------------------------------------------------ 2025-09-08T23:03:58,500 sella/internal/int_classes.pyx:405:33: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,500 Error compiling Cython file: 2025-09-08T23:03:58,500 ------------------------------------------------------------ 2025-09-08T23:03:58,500 ... 2025-09-08T23:03:58,500 self.nint = 0 2025-09-08T23:03:58,500 self.next = self.nx 2025-09-08T23:03:58,500 return 0 2025-09-08T23:03:58,500 for n in range(self.nq): 2025-09-08T23:03:58,500 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,500 ^ 2025-09-08T23:03:58,501 ------------------------------------------------------------ 2025-09-08T23:03:58,501 sella/internal/int_classes.pyx:405:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,501 Error compiling Cython file: 2025-09-08T23:03:58,501 ------------------------------------------------------------ 2025-09-08T23:03:58,501 ... 2025-09-08T23:03:58,501 self.nint = 0 2025-09-08T23:03:58,501 self.next = self.nx 2025-09-08T23:03:58,501 return 0 2025-09-08T23:03:58,501 for n in range(self.nq): 2025-09-08T23:03:58,501 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,502 ^ 2025-09-08T23:03:58,502 ------------------------------------------------------------ 2025-09-08T23:03:58,502 sella/internal/int_classes.pyx:405:64: Indexing Python object not allowed without gil 2025-09-08T23:03:58,502 Error compiling Cython file: 2025-09-08T23:03:58,502 ------------------------------------------------------------ 2025-09-08T23:03:58,502 ... 2025-09-08T23:03:58,502 self.nint = 0 2025-09-08T23:03:58,502 self.next = self.nx 2025-09-08T23:03:58,502 return 0 2025-09-08T23:03:58,503 for n in range(self.nq): 2025-09-08T23:03:58,503 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,503 ^ 2025-09-08T23:03:58,503 ------------------------------------------------------------ 2025-09-08T23:03:58,503 sella/internal/int_classes.pyx:405:59: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,503 Error compiling Cython file: 2025-09-08T23:03:58,503 ------------------------------------------------------------ 2025-09-08T23:03:58,503 ... 2025-09-08T23:03:58,503 self.nint = 0 2025-09-08T23:03:58,503 self.next = self.nx 2025-09-08T23:03:58,504 return 0 2025-09-08T23:03:58,504 for n in range(self.nq): 2025-09-08T23:03:58,504 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,504 ^ 2025-09-08T23:03:58,504 ------------------------------------------------------------ 2025-09-08T23:03:58,504 sella/internal/int_classes.pyx:405:64: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,504 Error compiling Cython file: 2025-09-08T23:03:58,504 ------------------------------------------------------------ 2025-09-08T23:03:58,504 ... 2025-09-08T23:03:58,504 return 0 2025-09-08T23:03:58,505 for n in range(self.nq): 2025-09-08T23:03:58,505 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,505 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,505 ^ 2025-09-08T23:03:58,505 ------------------------------------------------------------ 2025-09-08T23:03:58,505 sella/internal/int_classes.pyx:407:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,505 Error compiling Cython file: 2025-09-08T23:03:58,505 ------------------------------------------------------------ 2025-09-08T23:03:58,506 ... 2025-09-08T23:03:58,506 return 0 2025-09-08T23:03:58,506 for n in range(self.nq): 2025-09-08T23:03:58,506 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,506 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,506 ^ 2025-09-08T23:03:58,506 ------------------------------------------------------------ 2025-09-08T23:03:58,506 sella/internal/int_classes.pyx:407:24: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,507 Error compiling Cython file: 2025-09-08T23:03:58,507 ------------------------------------------------------------ 2025-09-08T23:03:58,507 ... 2025-09-08T23:03:58,507 return 0 2025-09-08T23:03:58,507 for n in range(self.nq): 2025-09-08T23:03:58,507 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,507 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,507 ^ 2025-09-08T23:03:58,507 ------------------------------------------------------------ 2025-09-08T23:03:58,507 sella/internal/int_classes.pyx:407:20: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,508 Error compiling Cython file: 2025-09-08T23:03:58,508 ------------------------------------------------------------ 2025-09-08T23:03:58,508 ... 2025-09-08T23:03:58,508 return 0 2025-09-08T23:03:58,508 for n in range(self.nq): 2025-09-08T23:03:58,508 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,508 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,508 ^ 2025-09-08T23:03:58,508 ------------------------------------------------------------ 2025-09-08T23:03:58,509 sella/internal/int_classes.pyx:407:24: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,509 Error compiling Cython file: 2025-09-08T23:03:58,509 ------------------------------------------------------------ 2025-09-08T23:03:58,509 ... 2025-09-08T23:03:58,509 return 0 2025-09-08T23:03:58,509 for n in range(self.nq): 2025-09-08T23:03:58,509 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,509 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,510 ^ 2025-09-08T23:03:58,510 ------------------------------------------------------------ 2025-09-08T23:03:58,510 sella/internal/int_classes.pyx:407:29: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,510 Error compiling Cython file: 2025-09-08T23:03:58,510 ------------------------------------------------------------ 2025-09-08T23:03:58,510 ... 2025-09-08T23:03:58,510 return 0 2025-09-08T23:03:58,510 for n in range(self.nq): 2025-09-08T23:03:58,511 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,511 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,511 ^ 2025-09-08T23:03:58,511 ------------------------------------------------------------ 2025-09-08T23:03:58,511 sella/internal/int_classes.pyx:407:38: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,511 Error compiling Cython file: 2025-09-08T23:03:58,511 ------------------------------------------------------------ 2025-09-08T23:03:58,511 ... 2025-09-08T23:03:58,511 return 0 2025-09-08T23:03:58,512 for n in range(self.nq): 2025-09-08T23:03:58,512 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,512 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,512 ^ 2025-09-08T23:03:58,512 ------------------------------------------------------------ 2025-09-08T23:03:58,512 sella/internal/int_classes.pyx:407:47: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,512 Error compiling Cython file: 2025-09-08T23:03:58,512 ------------------------------------------------------------ 2025-09-08T23:03:58,513 ... 2025-09-08T23:03:58,513 return 0 2025-09-08T23:03:58,513 for n in range(self.nq): 2025-09-08T23:03:58,513 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,513 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,513 ^ 2025-09-08T23:03:58,513 ------------------------------------------------------------ 2025-09-08T23:03:58,513 sella/internal/int_classes.pyx:407:58: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,514 Error compiling Cython file: 2025-09-08T23:03:58,514 ------------------------------------------------------------ 2025-09-08T23:03:58,514 ... 2025-09-08T23:03:58,514 return 0 2025-09-08T23:03:58,514 for n in range(self.nq): 2025-09-08T23:03:58,514 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,514 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,514 ^ 2025-09-08T23:03:58,514 ------------------------------------------------------------ 2025-09-08T23:03:58,515 sella/internal/int_classes.pyx:407:69: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,515 Error compiling Cython file: 2025-09-08T23:03:58,515 ------------------------------------------------------------ 2025-09-08T23:03:58,515 ... 2025-09-08T23:03:58,515 for n in range(self.nq): 2025-09-08T23:03:58,515 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,515 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,515 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,515 ^ 2025-09-08T23:03:58,515 ------------------------------------------------------------ 2025-09-08T23:03:58,516 sella/internal/int_classes.pyx:408:29: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,516 Error compiling Cython file: 2025-09-08T23:03:58,516 ------------------------------------------------------------ 2025-09-08T23:03:58,516 ... 2025-09-08T23:03:58,516 for n in range(self.nq): 2025-09-08T23:03:58,516 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,516 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,516 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,517 ^ 2025-09-08T23:03:58,517 ------------------------------------------------------------ 2025-09-08T23:03:58,517 sella/internal/int_classes.pyx:408:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,517 Error compiling Cython file: 2025-09-08T23:03:58,517 ------------------------------------------------------------ 2025-09-08T23:03:58,517 ... 2025-09-08T23:03:58,517 for n in range(self.nq): 2025-09-08T23:03:58,517 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,518 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,518 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,518 ^ 2025-09-08T23:03:58,518 ------------------------------------------------------------ 2025-09-08T23:03:58,518 sella/internal/int_classes.pyx:408:51: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,518 Error compiling Cython file: 2025-09-08T23:03:58,518 ------------------------------------------------------------ 2025-09-08T23:03:58,518 ... 2025-09-08T23:03:58,518 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,518 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,519 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,519 if self.nint < 0: 2025-09-08T23:03:58,519 ^ 2025-09-08T23:03:58,519 ------------------------------------------------------------ 2025-09-08T23:03:58,519 sella/internal/int_classes.pyx:410:21: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,519 Error compiling Cython file: 2025-09-08T23:03:58,519 ------------------------------------------------------------ 2025-09-08T23:03:58,519 ... 2025-09-08T23:03:58,519 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,520 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,520 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,520 if self.nint < 0: 2025-09-08T23:03:58,520 ^ 2025-09-08T23:03:58,520 ------------------------------------------------------------ 2025-09-08T23:03:58,520 sella/internal/int_classes.pyx:410:21: Operation not allowed without gil 2025-09-08T23:03:58,520 Error compiling Cython file: 2025-09-08T23:03:58,520 ------------------------------------------------------------ 2025-09-08T23:03:58,520 ... 2025-09-08T23:03:58,521 dcopy(&self.nx, &self.dq[n, 0, 0], &sddq, &self.Uint[n, 0], &sdu) 2025-09-08T23:03:58,521 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,521 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,521 if self.nint < 0: 2025-09-08T23:03:58,521 ^ 2025-09-08T23:03:58,521 ------------------------------------------------------------ 2025-09-08T23:03:58,521 sella/internal/int_classes.pyx:410:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,521 Error compiling Cython file: 2025-09-08T23:03:58,522 ------------------------------------------------------------ 2025-09-08T23:03:58,522 ... 2025-09-08T23:03:58,522 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,522 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,522 if self.nint < 0: 2025-09-08T23:03:58,522 return self.nint 2025-09-08T23:03:58,522 ^ 2025-09-08T23:03:58,522 ------------------------------------------------------------ 2025-09-08T23:03:58,522 sella/internal/int_classes.pyx:411:23: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,523 Error compiling Cython file: 2025-09-08T23:03:58,523 ------------------------------------------------------------ 2025-09-08T23:03:58,523 ... 2025-09-08T23:03:58,523 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,523 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,523 if self.nint < 0: 2025-09-08T23:03:58,523 return self.nint 2025-09-08T23:03:58,523 ^ 2025-09-08T23:03:58,523 ------------------------------------------------------------ 2025-09-08T23:03:58,524 sella/internal/int_classes.pyx:411:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,524 Error compiling Cython file: 2025-09-08T23:03:58,524 ------------------------------------------------------------ 2025-09-08T23:03:58,524 ... 2025-09-08T23:03:58,524 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,524 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,524 if self.nint < 0: 2025-09-08T23:03:58,524 return self.nint 2025-09-08T23:03:58,524 self.next = self.nx - self.nint 2025-09-08T23:03:58,524 ^ 2025-09-08T23:03:58,525 ------------------------------------------------------------ 2025-09-08T23:03:58,525 sella/internal/int_classes.pyx:412:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,525 Error compiling Cython file: 2025-09-08T23:03:58,525 ------------------------------------------------------------ 2025-09-08T23:03:58,525 ... 2025-09-08T23:03:58,525 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,525 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,525 if self.nint < 0: 2025-09-08T23:03:58,525 return self.nint 2025-09-08T23:03:58,525 self.next = self.nx - self.nint 2025-09-08T23:03:58,526 ^ 2025-09-08T23:03:58,526 ------------------------------------------------------------ 2025-09-08T23:03:58,526 sella/internal/int_classes.pyx:412:28: Operation not allowed without gil 2025-09-08T23:03:58,526 Error compiling Cython file: 2025-09-08T23:03:58,526 ------------------------------------------------------------ 2025-09-08T23:03:58,526 ... 2025-09-08T23:03:58,526 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,526 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,526 if self.nint < 0: 2025-09-08T23:03:58,527 return self.nint 2025-09-08T23:03:58,527 self.next = self.nx - self.nint 2025-09-08T23:03:58,527 ^ 2025-09-08T23:03:58,527 ------------------------------------------------------------ 2025-09-08T23:03:58,527 sella/internal/int_classes.pyx:412:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,527 Error compiling Cython file: 2025-09-08T23:03:58,527 ------------------------------------------------------------ 2025-09-08T23:03:58,527 ... 2025-09-08T23:03:58,527 self.nint = mppi(self.nq, self.nx, self.Uint, self.Usvd, self.Uext, 2025-09-08T23:03:58,527 self.sing, self.Binv, self.work3) 2025-09-08T23:03:58,528 if self.nint < 0: 2025-09-08T23:03:58,528 return self.nint 2025-09-08T23:03:58,528 self.next = self.nx - self.nint 2025-09-08T23:03:58,528 ^ 2025-09-08T23:03:58,528 ------------------------------------------------------------ 2025-09-08T23:03:58,528 sella/internal/int_classes.pyx:412:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,528 Error compiling Cython file: 2025-09-08T23:03:58,528 ------------------------------------------------------------ 2025-09-08T23:03:58,528 ... 2025-09-08T23:03:58,529 if self.nint < 0: 2025-09-08T23:03:58,529 return self.nint 2025-09-08T23:03:58,529 self.next = self.nx - self.nint 2025-09-08T23:03:58,529 self.calc_required = False 2025-09-08T23:03:58,529 ^ 2025-09-08T23:03:58,529 ------------------------------------------------------------ 2025-09-08T23:03:58,529 sella/internal/int_classes.pyx:414:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,529 Error compiling Cython file: 2025-09-08T23:03:58,530 ------------------------------------------------------------ 2025-09-08T23:03:58,530 ... 2025-09-08T23:03:58,530 self.calc_required = False 2025-09-08T23:03:58,530 return 0 2025-09-08T23:03:58,530 cdef int _angle_sum_diff(CartToInternal self, 2025-09-08T23:03:58,530 ^ 2025-09-08T23:03:58,530 ------------------------------------------------------------ 2025-09-08T23:03:58,530 sella/internal/int_classes.pyx:418:4: Function declared nogil has Python locals or temporaries 2025-09-08T23:03:58,531 Error compiling Cython file: 2025-09-08T23:03:58,531 ------------------------------------------------------------ 2025-09-08T23:03:58,531 ... 2025-09-08T23:03:58,531 bint grad, 2025-09-08T23:03:58,531 bint curv) nogil: 2025-09-08T23:03:58,531 cdef int err 2025-09-08T23:03:58,531 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,531 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,531 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,531 ^ 2025-09-08T23:03:58,531 ------------------------------------------------------------ 2025-09-08T23:03:58,532 sella/internal/int_classes.pyx:429:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,532 Error compiling Cython file: 2025-09-08T23:03:58,532 ------------------------------------------------------------ 2025-09-08T23:03:58,532 ... 2025-09-08T23:03:58,532 bint grad, 2025-09-08T23:03:58,532 bint curv) nogil: 2025-09-08T23:03:58,532 cdef int err 2025-09-08T23:03:58,532 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,532 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,532 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,533 ^ 2025-09-08T23:03:58,533 ------------------------------------------------------------ 2025-09-08T23:03:58,533 sella/internal/int_classes.pyx:429:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,533 Error compiling Cython file: 2025-09-08T23:03:58,533 ------------------------------------------------------------ 2025-09-08T23:03:58,533 ... 2025-09-08T23:03:58,533 bint grad, 2025-09-08T23:03:58,533 bint curv) nogil: 2025-09-08T23:03:58,533 cdef int err 2025-09-08T23:03:58,533 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,533 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,534 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,534 ^ 2025-09-08T23:03:58,534 ------------------------------------------------------------ 2025-09-08T23:03:58,534 sella/internal/int_classes.pyx:429:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,534 Error compiling Cython file: 2025-09-08T23:03:58,534 ------------------------------------------------------------ 2025-09-08T23:03:58,534 ... 2025-09-08T23:03:58,534 bint curv) nogil: 2025-09-08T23:03:58,534 cdef int err 2025-09-08T23:03:58,534 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,535 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,535 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,535 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,535 ^ 2025-09-08T23:03:58,535 ------------------------------------------------------------ 2025-09-08T23:03:58,535 sella/internal/int_classes.pyx:430:26: Indexing Python object not allowed without gil 2025-09-08T23:03:58,535 Error compiling Cython file: 2025-09-08T23:03:58,535 ------------------------------------------------------------ 2025-09-08T23:03:58,535 ... 2025-09-08T23:03:58,535 bint curv) nogil: 2025-09-08T23:03:58,535 cdef int err 2025-09-08T23:03:58,536 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,536 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,536 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,536 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,536 ^ 2025-09-08T23:03:58,536 ------------------------------------------------------------ 2025-09-08T23:03:58,536 sella/internal/int_classes.pyx:430:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,536 Error compiling Cython file: 2025-09-08T23:03:58,536 ------------------------------------------------------------ 2025-09-08T23:03:58,536 ... 2025-09-08T23:03:58,537 bint curv) nogil: 2025-09-08T23:03:58,537 cdef int err 2025-09-08T23:03:58,537 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,537 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,537 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,537 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,537 ^ 2025-09-08T23:03:58,537 ------------------------------------------------------------ 2025-09-08T23:03:58,537 sella/internal/int_classes.pyx:430:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,537 Error compiling Cython file: 2025-09-08T23:03:58,537 ------------------------------------------------------------ 2025-09-08T23:03:58,538 ... 2025-09-08T23:03:58,538 bint curv) nogil: 2025-09-08T23:03:58,538 cdef int err 2025-09-08T23:03:58,538 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,538 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,538 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,538 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,538 ^ 2025-09-08T23:03:58,538 ------------------------------------------------------------ 2025-09-08T23:03:58,538 sella/internal/int_classes.pyx:430:45: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,539 Error compiling Cython file: 2025-09-08T23:03:58,539 ------------------------------------------------------------ 2025-09-08T23:03:58,539 ... 2025-09-08T23:03:58,539 bint curv) nogil: 2025-09-08T23:03:58,539 cdef int err 2025-09-08T23:03:58,539 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,539 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,539 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,539 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,539 ^ 2025-09-08T23:03:58,539 ------------------------------------------------------------ 2025-09-08T23:03:58,540 sella/internal/int_classes.pyx:430:45: Operation not allowed without gil 2025-09-08T23:03:58,540 Error compiling Cython file: 2025-09-08T23:03:58,540 ------------------------------------------------------------ 2025-09-08T23:03:58,540 ... 2025-09-08T23:03:58,540 bint curv) nogil: 2025-09-08T23:03:58,540 cdef int err 2025-09-08T23:03:58,540 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,540 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,540 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,540 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,540 ^ 2025-09-08T23:03:58,540 ------------------------------------------------------------ 2025-09-08T23:03:58,541 sella/internal/int_classes.pyx:430:41: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,541 Error compiling Cython file: 2025-09-08T23:03:58,541 ------------------------------------------------------------ 2025-09-08T23:03:58,541 ... 2025-09-08T23:03:58,541 bint curv) nogil: 2025-09-08T23:03:58,541 cdef int err 2025-09-08T23:03:58,541 cdef size_t i, j, k, l, m 2025-09-08T23:03:58,541 cdef size_t sd = sizeof(double) 2025-09-08T23:03:58,541 memset(&self.work1[0, 0, 0, 0], 0, 297 * sd) 2025-09-08T23:03:58,541 memset(&self.work2[0, 0], 0, self.nx * sd) 2025-09-08T23:03:58,542 ^ 2025-09-08T23:03:58,542 ------------------------------------------------------------ 2025-09-08T23:03:58,542 sella/internal/int_classes.pyx:430:47: Converting to Python object not allowed without gil 2025-09-08T23:03:58,542 Error compiling Cython file: 2025-09-08T23:03:58,542 ------------------------------------------------------------ 2025-09-08T23:03:58,542 ... 2025-09-08T23:03:58,542 j = indices[1] 2025-09-08T23:03:58,542 k = indices[2] 2025-09-08T23:03:58,542 l = indices[3] 2025-09-08T23:03:58,543 # First part of the angle sum/diff 2025-09-08T23:03:58,543 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,543 ^ 2025-09-08T23:03:58,543 ------------------------------------------------------------ 2025-09-08T23:03:58,543 sella/internal/int_classes.pyx:437:21: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,543 Error compiling Cython file: 2025-09-08T23:03:58,543 ------------------------------------------------------------ 2025-09-08T23:03:58,543 ... 2025-09-08T23:03:58,543 j = indices[1] 2025-09-08T23:03:58,543 k = indices[2] 2025-09-08T23:03:58,544 l = indices[3] 2025-09-08T23:03:58,544 # First part of the angle sum/diff 2025-09-08T23:03:58,544 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,544 ^ 2025-09-08T23:03:58,544 ------------------------------------------------------------ 2025-09-08T23:03:58,544 sella/internal/int_classes.pyx:437:21: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,544 Error compiling Cython file: 2025-09-08T23:03:58,544 ------------------------------------------------------------ 2025-09-08T23:03:58,544 ... 2025-09-08T23:03:58,544 j = indices[1] 2025-09-08T23:03:58,545 k = indices[2] 2025-09-08T23:03:58,545 l = indices[3] 2025-09-08T23:03:58,545 # First part of the angle sum/diff 2025-09-08T23:03:58,545 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,545 ^ 2025-09-08T23:03:58,545 ------------------------------------------------------------ 2025-09-08T23:03:58,545 sella/internal/int_classes.pyx:437:14: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,545 Error compiling Cython file: 2025-09-08T23:03:58,545 ------------------------------------------------------------ 2025-09-08T23:03:58,546 ... 2025-09-08T23:03:58,546 j = indices[1] 2025-09-08T23:03:58,546 k = indices[2] 2025-09-08T23:03:58,546 l = indices[3] 2025-09-08T23:03:58,546 # First part of the angle sum/diff 2025-09-08T23:03:58,546 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,546 ^ 2025-09-08T23:03:58,546 ------------------------------------------------------------ 2025-09-08T23:03:58,546 sella/internal/int_classes.pyx:437:21: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,547 Error compiling Cython file: 2025-09-08T23:03:58,547 ------------------------------------------------------------ 2025-09-08T23:03:58,547 ... 2025-09-08T23:03:58,547 j = indices[1] 2025-09-08T23:03:58,547 k = indices[2] 2025-09-08T23:03:58,547 l = indices[3] 2025-09-08T23:03:58,547 # First part of the angle sum/diff 2025-09-08T23:03:58,547 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,547 ^ 2025-09-08T23:03:58,547 ------------------------------------------------------------ 2025-09-08T23:03:58,548 sella/internal/int_classes.pyx:437:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,548 Error compiling Cython file: 2025-09-08T23:03:58,548 ------------------------------------------------------------ 2025-09-08T23:03:58,548 ... 2025-09-08T23:03:58,548 j = indices[1] 2025-09-08T23:03:58,548 k = indices[2] 2025-09-08T23:03:58,548 l = indices[3] 2025-09-08T23:03:58,548 # First part of the angle sum/diff 2025-09-08T23:03:58,548 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,549 ^ 2025-09-08T23:03:58,549 ------------------------------------------------------------ 2025-09-08T23:03:58,549 sella/internal/int_classes.pyx:437:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,549 Error compiling Cython file: 2025-09-08T23:03:58,549 ------------------------------------------------------------ 2025-09-08T23:03:58,549 ... 2025-09-08T23:03:58,549 j = indices[1] 2025-09-08T23:03:58,549 k = indices[2] 2025-09-08T23:03:58,549 l = indices[3] 2025-09-08T23:03:58,549 # First part of the angle sum/diff 2025-09-08T23:03:58,550 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,550 ^ 2025-09-08T23:03:58,550 ------------------------------------------------------------ 2025-09-08T23:03:58,550 sella/internal/int_classes.pyx:437:43: Indexing Python object not allowed without gil 2025-09-08T23:03:58,550 Error compiling Cython file: 2025-09-08T23:03:58,550 ------------------------------------------------------------ 2025-09-08T23:03:58,550 ... 2025-09-08T23:03:58,550 j = indices[1] 2025-09-08T23:03:58,550 k = indices[2] 2025-09-08T23:03:58,550 l = indices[3] 2025-09-08T23:03:58,551 # First part of the angle sum/diff 2025-09-08T23:03:58,551 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,551 ^ 2025-09-08T23:03:58,551 ------------------------------------------------------------ 2025-09-08T23:03:58,551 sella/internal/int_classes.pyx:437:39: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,551 Error compiling Cython file: 2025-09-08T23:03:58,551 ------------------------------------------------------------ 2025-09-08T23:03:58,551 ... 2025-09-08T23:03:58,551 j = indices[1] 2025-09-08T23:03:58,552 k = indices[2] 2025-09-08T23:03:58,552 l = indices[3] 2025-09-08T23:03:58,552 # First part of the angle sum/diff 2025-09-08T23:03:58,552 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,552 ^ 2025-09-08T23:03:58,552 ------------------------------------------------------------ 2025-09-08T23:03:58,552 sella/internal/int_classes.pyx:437:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,552 Error compiling Cython file: 2025-09-08T23:03:58,552 ------------------------------------------------------------ 2025-09-08T23:03:58,553 ... 2025-09-08T23:03:58,553 l = indices[3] 2025-09-08T23:03:58,553 # First part of the angle sum/diff 2025-09-08T23:03:58,553 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,553 if err != 0: return err 2025-09-08T23:03:58,553 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,553 ^ 2025-09-08T23:03:58,553 ------------------------------------------------------------ 2025-09-08T23:03:58,553 sella/internal/int_classes.pyx:439:21: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,553 Error compiling Cython file: 2025-09-08T23:03:58,554 ------------------------------------------------------------ 2025-09-08T23:03:58,554 ... 2025-09-08T23:03:58,554 l = indices[3] 2025-09-08T23:03:58,554 # First part of the angle sum/diff 2025-09-08T23:03:58,554 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,554 if err != 0: return err 2025-09-08T23:03:58,554 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,554 ^ 2025-09-08T23:03:58,554 ------------------------------------------------------------ 2025-09-08T23:03:58,554 sella/internal/int_classes.pyx:439:21: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,555 Error compiling Cython file: 2025-09-08T23:03:58,555 ------------------------------------------------------------ 2025-09-08T23:03:58,555 ... 2025-09-08T23:03:58,555 l = indices[3] 2025-09-08T23:03:58,555 # First part of the angle sum/diff 2025-09-08T23:03:58,555 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,555 if err != 0: return err 2025-09-08T23:03:58,555 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,555 ^ 2025-09-08T23:03:58,555 ------------------------------------------------------------ 2025-09-08T23:03:58,556 sella/internal/int_classes.pyx:439:14: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,556 Error compiling Cython file: 2025-09-08T23:03:58,556 ------------------------------------------------------------ 2025-09-08T23:03:58,556 ... 2025-09-08T23:03:58,556 l = indices[3] 2025-09-08T23:03:58,556 # First part of the angle sum/diff 2025-09-08T23:03:58,556 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,556 if err != 0: return err 2025-09-08T23:03:58,556 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,556 ^ 2025-09-08T23:03:58,557 ------------------------------------------------------------ 2025-09-08T23:03:58,557 sella/internal/int_classes.pyx:439:21: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,557 Error compiling Cython file: 2025-09-08T23:03:58,557 ------------------------------------------------------------ 2025-09-08T23:03:58,557 ... 2025-09-08T23:03:58,557 l = indices[3] 2025-09-08T23:03:58,557 # First part of the angle sum/diff 2025-09-08T23:03:58,557 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,557 if err != 0: return err 2025-09-08T23:03:58,558 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,558 ^ 2025-09-08T23:03:58,558 ------------------------------------------------------------ 2025-09-08T23:03:58,558 sella/internal/int_classes.pyx:439:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,558 Error compiling Cython file: 2025-09-08T23:03:58,558 ------------------------------------------------------------ 2025-09-08T23:03:58,558 ... 2025-09-08T23:03:58,558 l = indices[3] 2025-09-08T23:03:58,558 # First part of the angle sum/diff 2025-09-08T23:03:58,558 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,559 if err != 0: return err 2025-09-08T23:03:58,559 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,559 ^ 2025-09-08T23:03:58,559 ------------------------------------------------------------ 2025-09-08T23:03:58,559 sella/internal/int_classes.pyx:439:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,559 Error compiling Cython file: 2025-09-08T23:03:58,559 ------------------------------------------------------------ 2025-09-08T23:03:58,559 ... 2025-09-08T23:03:58,559 l = indices[3] 2025-09-08T23:03:58,560 # First part of the angle sum/diff 2025-09-08T23:03:58,560 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,560 if err != 0: return err 2025-09-08T23:03:58,560 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,560 ^ 2025-09-08T23:03:58,560 ------------------------------------------------------------ 2025-09-08T23:03:58,560 sella/internal/int_classes.pyx:439:43: Indexing Python object not allowed without gil 2025-09-08T23:03:58,560 Error compiling Cython file: 2025-09-08T23:03:58,560 ------------------------------------------------------------ 2025-09-08T23:03:58,560 ... 2025-09-08T23:03:58,561 l = indices[3] 2025-09-08T23:03:58,561 # First part of the angle sum/diff 2025-09-08T23:03:58,561 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,561 if err != 0: return err 2025-09-08T23:03:58,561 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,561 ^ 2025-09-08T23:03:58,561 ------------------------------------------------------------ 2025-09-08T23:03:58,561 sella/internal/int_classes.pyx:439:39: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,561 Error compiling Cython file: 2025-09-08T23:03:58,561 ------------------------------------------------------------ 2025-09-08T23:03:58,562 ... 2025-09-08T23:03:58,562 l = indices[3] 2025-09-08T23:03:58,562 # First part of the angle sum/diff 2025-09-08T23:03:58,562 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,562 if err != 0: return err 2025-09-08T23:03:58,562 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,562 ^ 2025-09-08T23:03:58,562 ------------------------------------------------------------ 2025-09-08T23:03:58,562 sella/internal/int_classes.pyx:439:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,563 Error compiling Cython file: 2025-09-08T23:03:58,563 ------------------------------------------------------------ 2025-09-08T23:03:58,563 ... 2025-09-08T23:03:58,563 # First part of the angle sum/diff 2025-09-08T23:03:58,563 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,563 if err != 0: return err 2025-09-08T23:03:58,563 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,563 if err != 0: return err 2025-09-08T23:03:58,563 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,563 ^ 2025-09-08T23:03:58,563 ------------------------------------------------------------ 2025-09-08T23:03:58,564 sella/internal/int_classes.pyx:441:28: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,564 Error compiling Cython file: 2025-09-08T23:03:58,564 ------------------------------------------------------------ 2025-09-08T23:03:58,564 ... 2025-09-08T23:03:58,564 # First part of the angle sum/diff 2025-09-08T23:03:58,564 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,564 if err != 0: return err 2025-09-08T23:03:58,564 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,564 if err != 0: return err 2025-09-08T23:03:58,564 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,564 ^ 2025-09-08T23:03:58,565 ------------------------------------------------------------ 2025-09-08T23:03:58,565 sella/internal/int_classes.pyx:441:15: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,565 Error compiling Cython file: 2025-09-08T23:03:58,565 ------------------------------------------------------------ 2025-09-08T23:03:58,565 ... 2025-09-08T23:03:58,565 # First part of the angle sum/diff 2025-09-08T23:03:58,565 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,565 if err != 0: return err 2025-09-08T23:03:58,565 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,565 if err != 0: return err 2025-09-08T23:03:58,565 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,566 ^ 2025-09-08T23:03:58,566 ------------------------------------------------------------ 2025-09-08T23:03:58,566 sella/internal/int_classes.pyx:441:28: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,566 Error compiling Cython file: 2025-09-08T23:03:58,566 ------------------------------------------------------------ 2025-09-08T23:03:58,566 ... 2025-09-08T23:03:58,566 # First part of the angle sum/diff 2025-09-08T23:03:58,566 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,566 if err != 0: return err 2025-09-08T23:03:58,567 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,567 if err != 0: return err 2025-09-08T23:03:58,567 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,567 ^ 2025-09-08T23:03:58,567 ------------------------------------------------------------ 2025-09-08T23:03:58,567 sella/internal/int_classes.pyx:441:29: Converting to Python object not allowed without gil 2025-09-08T23:03:58,567 Error compiling Cython file: 2025-09-08T23:03:58,567 ------------------------------------------------------------ 2025-09-08T23:03:58,567 ... 2025-09-08T23:03:58,567 # First part of the angle sum/diff 2025-09-08T23:03:58,568 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,568 if err != 0: return err 2025-09-08T23:03:58,568 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,568 if err != 0: return err 2025-09-08T23:03:58,568 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,568 ^ 2025-09-08T23:03:58,568 ------------------------------------------------------------ 2025-09-08T23:03:58,568 sella/internal/int_classes.pyx:441:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,568 Error compiling Cython file: 2025-09-08T23:03:58,568 ------------------------------------------------------------ 2025-09-08T23:03:58,569 ... 2025-09-08T23:03:58,569 # First part of the angle sum/diff 2025-09-08T23:03:58,569 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,569 if err != 0: return err 2025-09-08T23:03:58,569 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,569 if err != 0: return err 2025-09-08T23:03:58,569 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,569 ^ 2025-09-08T23:03:58,569 ------------------------------------------------------------ 2025-09-08T23:03:58,569 sella/internal/int_classes.pyx:441:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,570 Error compiling Cython file: 2025-09-08T23:03:58,570 ------------------------------------------------------------ 2025-09-08T23:03:58,570 ... 2025-09-08T23:03:58,570 # First part of the angle sum/diff 2025-09-08T23:03:58,570 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,570 if err != 0: return err 2025-09-08T23:03:58,570 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,570 if err != 0: return err 2025-09-08T23:03:58,570 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,570 ^ 2025-09-08T23:03:58,570 ------------------------------------------------------------ 2025-09-08T23:03:58,571 sella/internal/int_classes.pyx:441:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,571 Error compiling Cython file: 2025-09-08T23:03:58,571 ------------------------------------------------------------ 2025-09-08T23:03:58,571 ... 2025-09-08T23:03:58,571 # First part of the angle sum/diff 2025-09-08T23:03:58,571 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,571 if err != 0: return err 2025-09-08T23:03:58,571 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,571 if err != 0: return err 2025-09-08T23:03:58,571 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,571 ^ 2025-09-08T23:03:58,571 ------------------------------------------------------------ 2025-09-08T23:03:58,572 sella/internal/int_classes.pyx:441:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,572 Error compiling Cython file: 2025-09-08T23:03:58,572 ------------------------------------------------------------ 2025-09-08T23:03:58,572 ... 2025-09-08T23:03:58,572 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,572 if err != 0: return err 2025-09-08T23:03:58,572 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,572 if err != 0: return err 2025-09-08T23:03:58,572 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,572 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,573 ^ 2025-09-08T23:03:58,573 ------------------------------------------------------------ 2025-09-08T23:03:58,573 sella/internal/int_classes.pyx:442:29: Converting to Python object not allowed without gil 2025-09-08T23:03:58,573 Error compiling Cython file: 2025-09-08T23:03:58,573 ------------------------------------------------------------ 2025-09-08T23:03:58,573 ... 2025-09-08T23:03:58,573 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,573 if err != 0: return err 2025-09-08T23:03:58,573 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,573 if err != 0: return err 2025-09-08T23:03:58,574 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,574 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,574 ^ 2025-09-08T23:03:58,574 ------------------------------------------------------------ 2025-09-08T23:03:58,574 sella/internal/int_classes.pyx:442:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,574 Error compiling Cython file: 2025-09-08T23:03:58,574 ------------------------------------------------------------ 2025-09-08T23:03:58,574 ... 2025-09-08T23:03:58,574 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,574 if err != 0: return err 2025-09-08T23:03:58,575 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,575 if err != 0: return err 2025-09-08T23:03:58,575 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,575 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,575 ^ 2025-09-08T23:03:58,575 ------------------------------------------------------------ 2025-09-08T23:03:58,575 sella/internal/int_classes.pyx:442:46: Slicing Python object not allowed without gil 2025-09-08T23:03:58,575 Error compiling Cython file: 2025-09-08T23:03:58,575 ------------------------------------------------------------ 2025-09-08T23:03:58,575 ... 2025-09-08T23:03:58,575 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,576 if err != 0: return err 2025-09-08T23:03:58,576 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,576 if err != 0: return err 2025-09-08T23:03:58,576 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,576 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,576 ^ 2025-09-08T23:03:58,576 ------------------------------------------------------------ 2025-09-08T23:03:58,576 sella/internal/int_classes.pyx:442:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,576 Error compiling Cython file: 2025-09-08T23:03:58,576 ------------------------------------------------------------ 2025-09-08T23:03:58,577 ... 2025-09-08T23:03:58,577 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,577 if err != 0: return err 2025-09-08T23:03:58,577 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,577 if err != 0: return err 2025-09-08T23:03:58,577 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,577 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,577 ^ 2025-09-08T23:03:58,577 ------------------------------------------------------------ 2025-09-08T23:03:58,577 sella/internal/int_classes.pyx:442:46: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,578 Error compiling Cython file: 2025-09-08T23:03:58,578 ------------------------------------------------------------ 2025-09-08T23:03:58,578 ... 2025-09-08T23:03:58,578 err = vec_sum(self.pos[l], self.pos[j], self.dx2, -1.) 2025-09-08T23:03:58,578 if err != 0: return err 2025-09-08T23:03:58,578 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,578 if err != 0: return err 2025-09-08T23:03:58,578 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,578 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,578 ^ 2025-09-08T23:03:58,578 ------------------------------------------------------------ 2025-09-08T23:03:58,578 sella/internal/int_classes.pyx:442:57: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,579 Error compiling Cython file: 2025-09-08T23:03:58,579 ------------------------------------------------------------ 2025-09-08T23:03:58,579 ... 2025-09-08T23:03:58,579 if err != 0: return err 2025-09-08T23:03:58,579 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,579 if err != 0: return err 2025-09-08T23:03:58,579 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,579 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,579 grad, curv) 2025-09-08T23:03:58,579 ^ 2025-09-08T23:03:58,579 ------------------------------------------------------------ 2025-09-08T23:03:58,580 sella/internal/int_classes.pyx:443:29: Converting to Python object not allowed without gil 2025-09-08T23:03:58,580 Error compiling Cython file: 2025-09-08T23:03:58,580 ------------------------------------------------------------ 2025-09-08T23:03:58,580 ... 2025-09-08T23:03:58,580 if err != 0: return err 2025-09-08T23:03:58,580 err = vec_sum(self.pos[j], self.pos[i], self.dx1, -1.) 2025-09-08T23:03:58,580 if err != 0: return err 2025-09-08T23:03:58,580 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,580 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,580 grad, curv) 2025-09-08T23:03:58,580 ^ 2025-09-08T23:03:58,581 ------------------------------------------------------------ 2025-09-08T23:03:58,581 sella/internal/int_classes.pyx:443:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,581 Error compiling Cython file: 2025-09-08T23:03:58,581 ------------------------------------------------------------ 2025-09-08T23:03:58,581 ... 2025-09-08T23:03:58,581 if err != 0: return err 2025-09-08T23:03:58,581 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,581 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,581 grad, curv) 2025-09-08T23:03:58,581 # Second part 2025-09-08T23:03:58,582 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,582 ^ 2025-09-08T23:03:58,582 ------------------------------------------------------------ 2025-09-08T23:03:58,582 sella/internal/int_classes.pyx:445:16: Slicing Python object not allowed without gil 2025-09-08T23:03:58,582 Error compiling Cython file: 2025-09-08T23:03:58,582 ------------------------------------------------------------ 2025-09-08T23:03:58,582 ... 2025-09-08T23:03:58,582 if err != 0: return err 2025-09-08T23:03:58,582 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,583 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,583 grad, curv) 2025-09-08T23:03:58,583 # Second part 2025-09-08T23:03:58,583 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,583 ^ 2025-09-08T23:03:58,583 ------------------------------------------------------------ 2025-09-08T23:03:58,583 sella/internal/int_classes.pyx:445:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,583 Error compiling Cython file: 2025-09-08T23:03:58,583 ------------------------------------------------------------ 2025-09-08T23:03:58,583 ... 2025-09-08T23:03:58,584 if err != 0: return err 2025-09-08T23:03:58,584 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,584 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,584 grad, curv) 2025-09-08T23:03:58,584 # Second part 2025-09-08T23:03:58,584 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,584 ^ 2025-09-08T23:03:58,584 ------------------------------------------------------------ 2025-09-08T23:03:58,584 sella/internal/int_classes.pyx:445:16: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,584 Error compiling Cython file: 2025-09-08T23:03:58,585 ------------------------------------------------------------ 2025-09-08T23:03:58,585 ... 2025-09-08T23:03:58,585 if err != 0: return err 2025-09-08T23:03:58,585 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,585 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,585 grad, curv) 2025-09-08T23:03:58,585 # Second part 2025-09-08T23:03:58,585 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,585 ^ 2025-09-08T23:03:58,585 ------------------------------------------------------------ 2025-09-08T23:03:58,585 sella/internal/int_classes.pyx:445:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,586 Error compiling Cython file: 2025-09-08T23:03:58,586 ------------------------------------------------------------ 2025-09-08T23:03:58,586 ... 2025-09-08T23:03:58,586 if err != 0: return err 2025-09-08T23:03:58,586 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,586 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,586 grad, curv) 2025-09-08T23:03:58,586 # Second part 2025-09-08T23:03:58,586 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,586 ^ 2025-09-08T23:03:58,586 ------------------------------------------------------------ 2025-09-08T23:03:58,587 sella/internal/int_classes.pyx:445:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,587 Error compiling Cython file: 2025-09-08T23:03:58,587 ------------------------------------------------------------ 2025-09-08T23:03:58,587 ... 2025-09-08T23:03:58,587 if err != 0: return err 2025-09-08T23:03:58,587 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,587 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,587 grad, curv) 2025-09-08T23:03:58,587 # Second part 2025-09-08T23:03:58,587 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,587 ^ 2025-09-08T23:03:58,588 ------------------------------------------------------------ 2025-09-08T23:03:58,588 sella/internal/int_classes.pyx:445:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,588 Error compiling Cython file: 2025-09-08T23:03:58,588 ------------------------------------------------------------ 2025-09-08T23:03:58,588 ... 2025-09-08T23:03:58,588 if err != 0: return err 2025-09-08T23:03:58,588 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,588 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,588 grad, curv) 2025-09-08T23:03:58,588 # Second part 2025-09-08T23:03:58,589 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,589 ^ 2025-09-08T23:03:58,589 ------------------------------------------------------------ 2025-09-08T23:03:58,589 sella/internal/int_classes.pyx:445:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,589 Error compiling Cython file: 2025-09-08T23:03:58,589 ------------------------------------------------------------ 2025-09-08T23:03:58,589 ... 2025-09-08T23:03:58,589 if err != 0: return err 2025-09-08T23:03:58,589 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,589 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,590 grad, curv) 2025-09-08T23:03:58,590 # Second part 2025-09-08T23:03:58,590 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,590 ^ 2025-09-08T23:03:58,590 ------------------------------------------------------------ 2025-09-08T23:03:58,590 sella/internal/int_classes.pyx:445:30: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,590 Error compiling Cython file: 2025-09-08T23:03:58,590 ------------------------------------------------------------ 2025-09-08T23:03:58,590 ... 2025-09-08T23:03:58,590 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,590 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,591 grad, curv) 2025-09-08T23:03:58,591 # Second part 2025-09-08T23:03:58,591 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,591 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,591 ^ 2025-09-08T23:03:58,591 ------------------------------------------------------------ 2025-09-08T23:03:58,591 sella/internal/int_classes.pyx:446:41: Indexing Python object not allowed without gil 2025-09-08T23:03:58,591 Error compiling Cython file: 2025-09-08T23:03:58,591 ------------------------------------------------------------ 2025-09-08T23:03:58,591 ... 2025-09-08T23:03:58,592 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,592 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,592 grad, curv) 2025-09-08T23:03:58,592 # Second part 2025-09-08T23:03:58,592 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,592 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,592 ^ 2025-09-08T23:03:58,592 ------------------------------------------------------------ 2025-09-08T23:03:58,592 sella/internal/int_classes.pyx:446:37: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,592 Error compiling Cython file: 2025-09-08T23:03:58,593 ------------------------------------------------------------ 2025-09-08T23:03:58,593 ... 2025-09-08T23:03:58,593 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,593 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,593 grad, curv) 2025-09-08T23:03:58,593 # Second part 2025-09-08T23:03:58,593 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,593 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,593 ^ 2025-09-08T23:03:58,593 ------------------------------------------------------------ 2025-09-08T23:03:58,593 sella/internal/int_classes.pyx:446:41: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,594 Error compiling Cython file: 2025-09-08T23:03:58,594 ------------------------------------------------------------ 2025-09-08T23:03:58,594 ... 2025-09-08T23:03:58,594 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,594 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,594 grad, curv) 2025-09-08T23:03:58,594 # Second part 2025-09-08T23:03:58,594 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,594 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,594 ^ 2025-09-08T23:03:58,594 ------------------------------------------------------------ 2025-09-08T23:03:58,595 sella/internal/int_classes.pyx:446:42: Converting to Python object not allowed without gil 2025-09-08T23:03:58,595 Error compiling Cython file: 2025-09-08T23:03:58,595 ------------------------------------------------------------ 2025-09-08T23:03:58,595 ... 2025-09-08T23:03:58,595 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,595 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,595 grad, curv) 2025-09-08T23:03:58,595 # Second part 2025-09-08T23:03:58,595 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,595 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,595 ^ 2025-09-08T23:03:58,596 ------------------------------------------------------------ 2025-09-08T23:03:58,596 sella/internal/int_classes.pyx:446:66: Indexing Python object not allowed without gil 2025-09-08T23:03:58,596 Error compiling Cython file: 2025-09-08T23:03:58,596 ------------------------------------------------------------ 2025-09-08T23:03:58,596 ... 2025-09-08T23:03:58,596 info = cart_to_angle(i, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,596 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,596 grad, curv) 2025-09-08T23:03:58,596 # Second part 2025-09-08T23:03:58,596 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,596 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,597 ^ 2025-09-08T23:03:58,597 ------------------------------------------------------------ 2025-09-08T23:03:58,597 sella/internal/int_classes.pyx:446:62: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,597 Error compiling Cython file: 2025-09-08T23:03:58,597 ------------------------------------------------------------ 2025-09-08T23:03:58,597 ... 2025-09-08T23:03:58,597 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,597 grad, curv) 2025-09-08T23:03:58,597 # Second part 2025-09-08T23:03:58,597 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,598 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,598 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,598 ^ 2025-09-08T23:03:58,598 ------------------------------------------------------------ 2025-09-08T23:03:58,598 sella/internal/int_classes.pyx:447:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,598 Error compiling Cython file: 2025-09-08T23:03:58,598 ------------------------------------------------------------ 2025-09-08T23:03:58,598 ... 2025-09-08T23:03:58,598 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,598 grad, curv) 2025-09-08T23:03:58,598 # Second part 2025-09-08T23:03:58,599 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,599 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,599 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,599 ^ 2025-09-08T23:03:58,599 ------------------------------------------------------------ 2025-09-08T23:03:58,599 sella/internal/int_classes.pyx:447:27: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,599 Error compiling Cython file: 2025-09-08T23:03:58,599 ------------------------------------------------------------ 2025-09-08T23:03:58,599 ... 2025-09-08T23:03:58,600 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,600 grad, curv) 2025-09-08T23:03:58,600 # Second part 2025-09-08T23:03:58,600 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,600 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,600 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,600 ^ 2025-09-08T23:03:58,600 ------------------------------------------------------------ 2025-09-08T23:03:58,600 sella/internal/int_classes.pyx:447:14: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,600 Error compiling Cython file: 2025-09-08T23:03:58,601 ------------------------------------------------------------ 2025-09-08T23:03:58,601 ... 2025-09-08T23:03:58,601 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,601 grad, curv) 2025-09-08T23:03:58,601 # Second part 2025-09-08T23:03:58,601 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,601 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,601 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,601 ^ 2025-09-08T23:03:58,601 ------------------------------------------------------------ 2025-09-08T23:03:58,601 sella/internal/int_classes.pyx:447:27: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,602 Error compiling Cython file: 2025-09-08T23:03:58,602 ------------------------------------------------------------ 2025-09-08T23:03:58,602 ... 2025-09-08T23:03:58,602 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,602 grad, curv) 2025-09-08T23:03:58,602 # Second part 2025-09-08T23:03:58,602 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,602 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,602 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,602 ^ 2025-09-08T23:03:58,602 ------------------------------------------------------------ 2025-09-08T23:03:58,603 sella/internal/int_classes.pyx:447:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,603 Error compiling Cython file: 2025-09-08T23:03:58,603 ------------------------------------------------------------ 2025-09-08T23:03:58,603 ... 2025-09-08T23:03:58,603 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,603 grad, curv) 2025-09-08T23:03:58,603 # Second part 2025-09-08T23:03:58,603 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,603 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,603 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,604 ^ 2025-09-08T23:03:58,604 ------------------------------------------------------------ 2025-09-08T23:03:58,604 sella/internal/int_classes.pyx:447:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,604 Error compiling Cython file: 2025-09-08T23:03:58,604 ------------------------------------------------------------ 2025-09-08T23:03:58,604 ... 2025-09-08T23:03:58,604 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,604 grad, curv) 2025-09-08T23:03:58,604 # Second part 2025-09-08T23:03:58,604 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,605 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,605 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,605 ^ 2025-09-08T23:03:58,605 ------------------------------------------------------------ 2025-09-08T23:03:58,605 sella/internal/int_classes.pyx:447:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,605 Error compiling Cython file: 2025-09-08T23:03:58,605 ------------------------------------------------------------ 2025-09-08T23:03:58,605 ... 2025-09-08T23:03:58,605 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,605 grad, curv) 2025-09-08T23:03:58,606 # Second part 2025-09-08T23:03:58,606 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,606 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,606 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,606 ^ 2025-09-08T23:03:58,606 ------------------------------------------------------------ 2025-09-08T23:03:58,606 sella/internal/int_classes.pyx:447:41: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,606 Error compiling Cython file: 2025-09-08T23:03:58,606 ------------------------------------------------------------ 2025-09-08T23:03:58,606 ... 2025-09-08T23:03:58,606 q, dq, self.work1[4:7], self.work1, 2025-09-08T23:03:58,607 grad, curv) 2025-09-08T23:03:58,607 # Second part 2025-09-08T23:03:58,607 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,607 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,607 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,607 ^ 2025-09-08T23:03:58,607 ------------------------------------------------------------ 2025-09-08T23:03:58,607 sella/internal/int_classes.pyx:447:51: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,607 Error compiling Cython file: 2025-09-08T23:03:58,607 ------------------------------------------------------------ 2025-09-08T23:03:58,608 ... 2025-09-08T23:03:58,608 grad, curv) 2025-09-08T23:03:58,608 # Second part 2025-09-08T23:03:58,608 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,608 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,608 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,608 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,608 ^ 2025-09-08T23:03:58,608 ------------------------------------------------------------ 2025-09-08T23:03:58,608 sella/internal/int_classes.pyx:448:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,608 Error compiling Cython file: 2025-09-08T23:03:58,609 ------------------------------------------------------------ 2025-09-08T23:03:58,609 ... 2025-09-08T23:03:58,609 grad, curv) 2025-09-08T23:03:58,609 # Second part 2025-09-08T23:03:58,609 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,609 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,609 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,609 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,609 ^ 2025-09-08T23:03:58,609 ------------------------------------------------------------ 2025-09-08T23:03:58,609 sella/internal/int_classes.pyx:448:39: Indexing Python object not allowed without gil 2025-09-08T23:03:58,610 Error compiling Cython file: 2025-09-08T23:03:58,610 ------------------------------------------------------------ 2025-09-08T23:03:58,610 ... 2025-09-08T23:03:58,610 grad, curv) 2025-09-08T23:03:58,610 # Second part 2025-09-08T23:03:58,610 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,610 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,610 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,610 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,610 ^ 2025-09-08T23:03:58,610 ------------------------------------------------------------ 2025-09-08T23:03:58,611 sella/internal/int_classes.pyx:448:33: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,611 Error compiling Cython file: 2025-09-08T23:03:58,611 ------------------------------------------------------------ 2025-09-08T23:03:58,611 ... 2025-09-08T23:03:58,611 grad, curv) 2025-09-08T23:03:58,611 # Second part 2025-09-08T23:03:58,611 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,611 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,611 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,611 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,611 ^ 2025-09-08T23:03:58,612 ------------------------------------------------------------ 2025-09-08T23:03:58,612 sella/internal/int_classes.pyx:448:39: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,612 Error compiling Cython file: 2025-09-08T23:03:58,612 ------------------------------------------------------------ 2025-09-08T23:03:58,612 ... 2025-09-08T23:03:58,612 grad, curv) 2025-09-08T23:03:58,612 # Second part 2025-09-08T23:03:58,612 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,612 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,612 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,613 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,613 ^ 2025-09-08T23:03:58,613 ------------------------------------------------------------ 2025-09-08T23:03:58,613 sella/internal/int_classes.pyx:448:57: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,613 Error compiling Cython file: 2025-09-08T23:03:58,613 ------------------------------------------------------------ 2025-09-08T23:03:58,613 ... 2025-09-08T23:03:58,613 # Second part 2025-09-08T23:03:58,613 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,613 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,614 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,614 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,614 self.work1[7:10], self.work1, 2025-09-08T23:03:58,614 ^ 2025-09-08T23:03:58,614 ------------------------------------------------------------ 2025-09-08T23:03:58,614 sella/internal/int_classes.pyx:449:38: Slicing Python object not allowed without gil 2025-09-08T23:03:58,614 Error compiling Cython file: 2025-09-08T23:03:58,614 ------------------------------------------------------------ 2025-09-08T23:03:58,614 ... 2025-09-08T23:03:58,614 # Second part 2025-09-08T23:03:58,614 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,615 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,615 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,615 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,615 self.work1[7:10], self.work1, 2025-09-08T23:03:58,615 ^ 2025-09-08T23:03:58,615 ------------------------------------------------------------ 2025-09-08T23:03:58,615 sella/internal/int_classes.pyx:449:32: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,615 Error compiling Cython file: 2025-09-08T23:03:58,615 ------------------------------------------------------------ 2025-09-08T23:03:58,616 ... 2025-09-08T23:03:58,616 # Second part 2025-09-08T23:03:58,616 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,616 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,616 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,616 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,616 self.work1[7:10], self.work1, 2025-09-08T23:03:58,616 ^ 2025-09-08T23:03:58,616 ------------------------------------------------------------ 2025-09-08T23:03:58,616 sella/internal/int_classes.pyx:449:38: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,617 Error compiling Cython file: 2025-09-08T23:03:58,617 ------------------------------------------------------------ 2025-09-08T23:03:58,617 ... 2025-09-08T23:03:58,617 # Second part 2025-09-08T23:03:58,617 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,617 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,617 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,617 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,617 self.work1[7:10], self.work1, 2025-09-08T23:03:58,617 ^ 2025-09-08T23:03:58,617 ------------------------------------------------------------ 2025-09-08T23:03:58,618 sella/internal/int_classes.pyx:449:50: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,618 Error compiling Cython file: 2025-09-08T23:03:58,618 ------------------------------------------------------------ 2025-09-08T23:03:58,618 ... 2025-09-08T23:03:58,618 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,618 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,618 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,618 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,618 self.work1[7:10], self.work1, 2025-09-08T23:03:58,618 grad, curv) 2025-09-08T23:03:58,618 ^ 2025-09-08T23:03:58,618 ------------------------------------------------------------ 2025-09-08T23:03:58,619 sella/internal/int_classes.pyx:450:28: Converting to Python object not allowed without gil 2025-09-08T23:03:58,619 Error compiling Cython file: 2025-09-08T23:03:58,619 ------------------------------------------------------------ 2025-09-08T23:03:58,619 ... 2025-09-08T23:03:58,619 self.dx1[:] = self.pos[j, :] 2025-09-08T23:03:58,619 daxpy(&THREE, &DNUNITY, &self.pos[k, 0], &UNITY, &self.dx1[0], &UNITY) 2025-09-08T23:03:58,619 err = cart_to_angle(k, j, l, self.dx1, self.dx2, 2025-09-08T23:03:58,619 &self.work1[3, 0, 0, 0], self.work2, 2025-09-08T23:03:58,619 self.work1[7:10], self.work1, 2025-09-08T23:03:58,619 grad, curv) 2025-09-08T23:03:58,620 ^ 2025-09-08T23:03:58,620 ------------------------------------------------------------ 2025-09-08T23:03:58,620 sella/internal/int_classes.pyx:450:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,620 Error compiling Cython file: 2025-09-08T23:03:58,620 ------------------------------------------------------------ 2025-09-08T23:03:58,620 ... 2025-09-08T23:03:58,620 self.work1[7:10], self.work1, 2025-09-08T23:03:58,620 grad, curv) 2025-09-08T23:03:58,620 if err != 0: return err 2025-09-08T23:03:58,621 # Combine results 2025-09-08T23:03:58,621 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,621 ^ 2025-09-08T23:03:58,621 ------------------------------------------------------------ 2025-09-08T23:03:58,621 sella/internal/int_classes.pyx:454:9: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,621 Error compiling Cython file: 2025-09-08T23:03:58,621 ------------------------------------------------------------ 2025-09-08T23:03:58,621 ... 2025-09-08T23:03:58,621 self.work1[7:10], self.work1, 2025-09-08T23:03:58,621 grad, curv) 2025-09-08T23:03:58,622 if err != 0: return err 2025-09-08T23:03:58,622 # Combine results 2025-09-08T23:03:58,622 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,622 ^ 2025-09-08T23:03:58,622 ------------------------------------------------------------ 2025-09-08T23:03:58,622 sella/internal/int_classes.pyx:454:9: Operation not allowed without gil 2025-09-08T23:03:58,622 Error compiling Cython file: 2025-09-08T23:03:58,622 ------------------------------------------------------------ 2025-09-08T23:03:58,622 ... 2025-09-08T23:03:58,623 self.work1[7:10], self.work1, 2025-09-08T23:03:58,623 grad, curv) 2025-09-08T23:03:58,623 if err != 0: return err 2025-09-08T23:03:58,623 # Combine results 2025-09-08T23:03:58,623 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,623 ^ 2025-09-08T23:03:58,623 ------------------------------------------------------------ 2025-09-08T23:03:58,623 sella/internal/int_classes.pyx:454:9: Converting to Python object not allowed without gil 2025-09-08T23:03:58,623 Error compiling Cython file: 2025-09-08T23:03:58,623 ------------------------------------------------------------ 2025-09-08T23:03:58,624 ... 2025-09-08T23:03:58,624 self.work1[7:10], self.work1, 2025-09-08T23:03:58,624 grad, curv) 2025-09-08T23:03:58,624 if err != 0: return err 2025-09-08T23:03:58,624 # Combine results 2025-09-08T23:03:58,624 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,624 ^ 2025-09-08T23:03:58,624 ------------------------------------------------------------ 2025-09-08T23:03:58,624 sella/internal/int_classes.pyx:454:21: Operation not allowed without gil 2025-09-08T23:03:58,625 Error compiling Cython file: 2025-09-08T23:03:58,625 ------------------------------------------------------------ 2025-09-08T23:03:58,625 ... 2025-09-08T23:03:58,625 self.work1[7:10], self.work1, 2025-09-08T23:03:58,625 grad, curv) 2025-09-08T23:03:58,625 if err != 0: return err 2025-09-08T23:03:58,625 # Combine results 2025-09-08T23:03:58,625 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,625 ^ 2025-09-08T23:03:58,625 ------------------------------------------------------------ 2025-09-08T23:03:58,626 sella/internal/int_classes.pyx:454:16: Converting to Python object not allowed without gil 2025-09-08T23:03:58,626 Error compiling Cython file: 2025-09-08T23:03:58,626 ------------------------------------------------------------ 2025-09-08T23:03:58,626 ... 2025-09-08T23:03:58,626 self.work1[7:10], self.work1, 2025-09-08T23:03:58,626 grad, curv) 2025-09-08T23:03:58,626 if err != 0: return err 2025-09-08T23:03:58,626 # Combine results 2025-09-08T23:03:58,626 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,626 ^ 2025-09-08T23:03:58,626 ------------------------------------------------------------ 2025-09-08T23:03:58,627 sella/internal/int_classes.pyx:454:33: Indexing Python object not allowed without gil 2025-09-08T23:03:58,627 Error compiling Cython file: 2025-09-08T23:03:58,627 ------------------------------------------------------------ 2025-09-08T23:03:58,627 ... 2025-09-08T23:03:58,627 self.work1[7:10], self.work1, 2025-09-08T23:03:58,627 grad, curv) 2025-09-08T23:03:58,627 if err != 0: return err 2025-09-08T23:03:58,627 # Combine results 2025-09-08T23:03:58,627 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,628 ^ 2025-09-08T23:03:58,628 ------------------------------------------------------------ 2025-09-08T23:03:58,628 sella/internal/int_classes.pyx:454:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,628 Error compiling Cython file: 2025-09-08T23:03:58,628 ------------------------------------------------------------ 2025-09-08T23:03:58,628 ... 2025-09-08T23:03:58,628 self.work1[7:10], self.work1, 2025-09-08T23:03:58,628 grad, curv) 2025-09-08T23:03:58,628 if err != 0: return err 2025-09-08T23:03:58,628 # Combine results 2025-09-08T23:03:58,629 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,629 ^ 2025-09-08T23:03:58,629 ------------------------------------------------------------ 2025-09-08T23:03:58,629 sella/internal/int_classes.pyx:454:33: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,629 Error compiling Cython file: 2025-09-08T23:03:58,629 ------------------------------------------------------------ 2025-09-08T23:03:58,629 ... 2025-09-08T23:03:58,629 if err != 0: return err 2025-09-08T23:03:58,629 # Combine results 2025-09-08T23:03:58,630 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,630 if grad or curv: 2025-09-08T23:03:58,630 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,630 ^ 2025-09-08T23:03:58,630 ------------------------------------------------------------ 2025-09-08T23:03:58,630 sella/internal/int_classes.pyx:456:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,630 Error compiling Cython file: 2025-09-08T23:03:58,630 ------------------------------------------------------------ 2025-09-08T23:03:58,630 ... 2025-09-08T23:03:58,630 if err != 0: return err 2025-09-08T23:03:58,631 # Combine results 2025-09-08T23:03:58,631 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,631 if grad or curv: 2025-09-08T23:03:58,631 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,631 ^ 2025-09-08T23:03:58,631 ------------------------------------------------------------ 2025-09-08T23:03:58,631 sella/internal/int_classes.pyx:456:46: Indexing Python object not allowed without gil 2025-09-08T23:03:58,631 Error compiling Cython file: 2025-09-08T23:03:58,631 ------------------------------------------------------------ 2025-09-08T23:03:58,631 ... 2025-09-08T23:03:58,632 if err != 0: return err 2025-09-08T23:03:58,632 # Combine results 2025-09-08T23:03:58,632 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,632 if grad or curv: 2025-09-08T23:03:58,632 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,632 ^ 2025-09-08T23:03:58,632 ------------------------------------------------------------ 2025-09-08T23:03:58,632 sella/internal/int_classes.pyx:456:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,632 Error compiling Cython file: 2025-09-08T23:03:58,633 ------------------------------------------------------------ 2025-09-08T23:03:58,633 ... 2025-09-08T23:03:58,633 if err != 0: return err 2025-09-08T23:03:58,633 # Combine results 2025-09-08T23:03:58,633 q[0] += sign * self.work1[3, 0, 0, 0] 2025-09-08T23:03:58,633 if grad or curv: 2025-09-08T23:03:58,633 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,633 ^ 2025-09-08T23:03:58,633 ------------------------------------------------------------ 2025-09-08T23:03:58,633 sella/internal/int_classes.pyx:456:46: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,634 Error compiling Cython file: 2025-09-08T23:03:58,634 ------------------------------------------------------------ 2025-09-08T23:03:58,634 ... 2025-09-08T23:03:58,634 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,634 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,634 # Combine second derivatives 2025-09-08T23:03:58,634 for i in range(3): 2025-09-08T23:03:58,634 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,634 ^ 2025-09-08T23:03:58,634 ------------------------------------------------------------ 2025-09-08T23:03:58,635 sella/internal/int_classes.pyx:461:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,635 Error compiling Cython file: 2025-09-08T23:03:58,635 ------------------------------------------------------------ 2025-09-08T23:03:58,635 ... 2025-09-08T23:03:58,635 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,635 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,635 # Combine second derivatives 2025-09-08T23:03:58,635 for i in range(3): 2025-09-08T23:03:58,635 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,636 ^ 2025-09-08T23:03:58,636 ------------------------------------------------------------ 2025-09-08T23:03:58,636 sella/internal/int_classes.pyx:461:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,636 Error compiling Cython file: 2025-09-08T23:03:58,636 ------------------------------------------------------------ 2025-09-08T23:03:58,636 ... 2025-09-08T23:03:58,636 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,636 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,636 # Combine second derivatives 2025-09-08T23:03:58,637 for i in range(3): 2025-09-08T23:03:58,637 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,637 ^ 2025-09-08T23:03:58,637 ------------------------------------------------------------ 2025-09-08T23:03:58,637 sella/internal/int_classes.pyx:461:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,637 Error compiling Cython file: 2025-09-08T23:03:58,637 ------------------------------------------------------------ 2025-09-08T23:03:58,637 ... 2025-09-08T23:03:58,637 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,637 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,638 # Combine second derivatives 2025-09-08T23:03:58,638 for i in range(3): 2025-09-08T23:03:58,638 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,638 ^ 2025-09-08T23:03:58,638 ------------------------------------------------------------ 2025-09-08T23:03:58,638 sella/internal/int_classes.pyx:461:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,638 Error compiling Cython file: 2025-09-08T23:03:58,638 ------------------------------------------------------------ 2025-09-08T23:03:58,638 ... 2025-09-08T23:03:58,638 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,639 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,639 # Combine second derivatives 2025-09-08T23:03:58,639 for i in range(3): 2025-09-08T23:03:58,639 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,639 ^ 2025-09-08T23:03:58,639 ------------------------------------------------------------ 2025-09-08T23:03:58,639 sella/internal/int_classes.pyx:461:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,639 Error compiling Cython file: 2025-09-08T23:03:58,639 ------------------------------------------------------------ 2025-09-08T23:03:58,640 ... 2025-09-08T23:03:58,640 daxpy(&self.nx, &sign, &self.work2[0, 0], &UNITY, 2025-09-08T23:03:58,640 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,640 # Combine second derivatives 2025-09-08T23:03:58,640 for i in range(3): 2025-09-08T23:03:58,640 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,640 ^ 2025-09-08T23:03:58,640 ------------------------------------------------------------ 2025-09-08T23:03:58,640 sella/internal/int_classes.pyx:461:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,641 Error compiling Cython file: 2025-09-08T23:03:58,641 ------------------------------------------------------------ 2025-09-08T23:03:58,641 ... 2025-09-08T23:03:58,641 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,641 # Combine second derivatives 2025-09-08T23:03:58,641 for i in range(3): 2025-09-08T23:03:58,641 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,641 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,641 ^ 2025-09-08T23:03:58,641 ------------------------------------------------------------ 2025-09-08T23:03:58,642 sella/internal/int_classes.pyx:462:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,642 Error compiling Cython file: 2025-09-08T23:03:58,642 ------------------------------------------------------------ 2025-09-08T23:03:58,642 ... 2025-09-08T23:03:58,642 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,642 # Combine second derivatives 2025-09-08T23:03:58,642 for i in range(3): 2025-09-08T23:03:58,642 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,642 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,642 ^ 2025-09-08T23:03:58,643 ------------------------------------------------------------ 2025-09-08T23:03:58,643 sella/internal/int_classes.pyx:462:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,643 Error compiling Cython file: 2025-09-08T23:03:58,643 ------------------------------------------------------------ 2025-09-08T23:03:58,643 ... 2025-09-08T23:03:58,643 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,643 # Combine second derivatives 2025-09-08T23:03:58,643 for i in range(3): 2025-09-08T23:03:58,643 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,643 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,644 ^ 2025-09-08T23:03:58,644 ------------------------------------------------------------ 2025-09-08T23:03:58,644 sella/internal/int_classes.pyx:462:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,644 Error compiling Cython file: 2025-09-08T23:03:58,644 ------------------------------------------------------------ 2025-09-08T23:03:58,644 ... 2025-09-08T23:03:58,644 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,644 # Combine second derivatives 2025-09-08T23:03:58,644 for i in range(3): 2025-09-08T23:03:58,645 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,645 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,645 ^ 2025-09-08T23:03:58,645 ------------------------------------------------------------ 2025-09-08T23:03:58,645 sella/internal/int_classes.pyx:462:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,645 Error compiling Cython file: 2025-09-08T23:03:58,645 ------------------------------------------------------------ 2025-09-08T23:03:58,645 ... 2025-09-08T23:03:58,645 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,645 # Combine second derivatives 2025-09-08T23:03:58,646 for i in range(3): 2025-09-08T23:03:58,646 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,646 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,646 ^ 2025-09-08T23:03:58,646 ------------------------------------------------------------ 2025-09-08T23:03:58,646 sella/internal/int_classes.pyx:462:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,646 Error compiling Cython file: 2025-09-08T23:03:58,646 ------------------------------------------------------------ 2025-09-08T23:03:58,646 ... 2025-09-08T23:03:58,646 &dq[0, 0], &UNITY) 2025-09-08T23:03:58,647 # Combine second derivatives 2025-09-08T23:03:58,647 for i in range(3): 2025-09-08T23:03:58,647 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,647 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,647 ^ 2025-09-08T23:03:58,647 ------------------------------------------------------------ 2025-09-08T23:03:58,647 sella/internal/int_classes.pyx:462:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,647 Error compiling Cython file: 2025-09-08T23:03:58,647 ------------------------------------------------------------ 2025-09-08T23:03:58,648 ... 2025-09-08T23:03:58,648 # Combine second derivatives 2025-09-08T23:03:58,648 for i in range(3): 2025-09-08T23:03:58,648 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,648 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,648 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,648 ^ 2025-09-08T23:03:58,648 ------------------------------------------------------------ 2025-09-08T23:03:58,648 sella/internal/int_classes.pyx:463:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,648 Error compiling Cython file: 2025-09-08T23:03:58,649 ------------------------------------------------------------ 2025-09-08T23:03:58,649 ... 2025-09-08T23:03:58,649 # Combine second derivatives 2025-09-08T23:03:58,649 for i in range(3): 2025-09-08T23:03:58,649 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,649 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,649 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,649 ^ 2025-09-08T23:03:58,649 ------------------------------------------------------------ 2025-09-08T23:03:58,649 sella/internal/int_classes.pyx:463:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,650 Error compiling Cython file: 2025-09-08T23:03:58,650 ------------------------------------------------------------ 2025-09-08T23:03:58,650 ... 2025-09-08T23:03:58,650 # Combine second derivatives 2025-09-08T23:03:58,650 for i in range(3): 2025-09-08T23:03:58,650 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,650 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,650 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,650 ^ 2025-09-08T23:03:58,650 ------------------------------------------------------------ 2025-09-08T23:03:58,651 sella/internal/int_classes.pyx:463:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,651 Error compiling Cython file: 2025-09-08T23:03:58,651 ------------------------------------------------------------ 2025-09-08T23:03:58,651 ... 2025-09-08T23:03:58,651 # Combine second derivatives 2025-09-08T23:03:58,651 for i in range(3): 2025-09-08T23:03:58,651 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,651 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,651 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,651 ^ 2025-09-08T23:03:58,652 ------------------------------------------------------------ 2025-09-08T23:03:58,652 sella/internal/int_classes.pyx:463:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,652 Error compiling Cython file: 2025-09-08T23:03:58,652 ------------------------------------------------------------ 2025-09-08T23:03:58,652 ... 2025-09-08T23:03:58,652 # Combine second derivatives 2025-09-08T23:03:58,652 for i in range(3): 2025-09-08T23:03:58,652 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,653 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,653 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,653 ^ 2025-09-08T23:03:58,653 ------------------------------------------------------------ 2025-09-08T23:03:58,653 sella/internal/int_classes.pyx:463:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,653 Error compiling Cython file: 2025-09-08T23:03:58,653 ------------------------------------------------------------ 2025-09-08T23:03:58,653 ... 2025-09-08T23:03:58,653 # Combine second derivatives 2025-09-08T23:03:58,654 for i in range(3): 2025-09-08T23:03:58,654 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,654 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,654 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,654 ^ 2025-09-08T23:03:58,654 ------------------------------------------------------------ 2025-09-08T23:03:58,654 sella/internal/int_classes.pyx:463:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,654 Error compiling Cython file: 2025-09-08T23:03:58,654 ------------------------------------------------------------ 2025-09-08T23:03:58,654 ... 2025-09-08T23:03:58,654 for i in range(3): 2025-09-08T23:03:58,655 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,655 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,655 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,655 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,655 ^ 2025-09-08T23:03:58,655 ------------------------------------------------------------ 2025-09-08T23:03:58,655 sella/internal/int_classes.pyx:465:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,655 Error compiling Cython file: 2025-09-08T23:03:58,655 ------------------------------------------------------------ 2025-09-08T23:03:58,656 ... 2025-09-08T23:03:58,656 for i in range(3): 2025-09-08T23:03:58,656 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,656 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,656 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,656 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,656 ^ 2025-09-08T23:03:58,656 ------------------------------------------------------------ 2025-09-08T23:03:58,656 sella/internal/int_classes.pyx:465:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,656 Error compiling Cython file: 2025-09-08T23:03:58,657 ------------------------------------------------------------ 2025-09-08T23:03:58,657 ... 2025-09-08T23:03:58,657 for i in range(3): 2025-09-08T23:03:58,657 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,657 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,657 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,657 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,657 ^ 2025-09-08T23:03:58,657 ------------------------------------------------------------ 2025-09-08T23:03:58,657 sella/internal/int_classes.pyx:465:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,658 Error compiling Cython file: 2025-09-08T23:03:58,658 ------------------------------------------------------------ 2025-09-08T23:03:58,658 ... 2025-09-08T23:03:58,658 for i in range(3): 2025-09-08T23:03:58,658 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,658 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,658 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,658 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,658 ^ 2025-09-08T23:03:58,658 ------------------------------------------------------------ 2025-09-08T23:03:58,659 sella/internal/int_classes.pyx:465:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,659 Error compiling Cython file: 2025-09-08T23:03:58,659 ------------------------------------------------------------ 2025-09-08T23:03:58,659 ... 2025-09-08T23:03:58,659 for i in range(3): 2025-09-08T23:03:58,659 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,659 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,659 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,659 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,660 ^ 2025-09-08T23:03:58,660 ------------------------------------------------------------ 2025-09-08T23:03:58,660 sella/internal/int_classes.pyx:465:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,660 Error compiling Cython file: 2025-09-08T23:03:58,660 ------------------------------------------------------------ 2025-09-08T23:03:58,660 ... 2025-09-08T23:03:58,660 for i in range(3): 2025-09-08T23:03:58,660 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,660 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,660 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,661 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,661 ^ 2025-09-08T23:03:58,661 ------------------------------------------------------------ 2025-09-08T23:03:58,661 sella/internal/int_classes.pyx:465:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,661 Error compiling Cython file: 2025-09-08T23:03:58,661 ------------------------------------------------------------ 2025-09-08T23:03:58,661 ... 2025-09-08T23:03:58,661 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,661 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,661 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,662 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,662 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,662 ^ 2025-09-08T23:03:58,662 ------------------------------------------------------------ 2025-09-08T23:03:58,662 sella/internal/int_classes.pyx:466:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,662 Error compiling Cython file: 2025-09-08T23:03:58,662 ------------------------------------------------------------ 2025-09-08T23:03:58,662 ... 2025-09-08T23:03:58,662 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,663 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,663 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,663 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,663 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,663 ^ 2025-09-08T23:03:58,663 ------------------------------------------------------------ 2025-09-08T23:03:58,663 sella/internal/int_classes.pyx:466:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,663 Error compiling Cython file: 2025-09-08T23:03:58,663 ------------------------------------------------------------ 2025-09-08T23:03:58,664 ... 2025-09-08T23:03:58,664 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,664 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,664 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,664 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,664 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,664 ^ 2025-09-08T23:03:58,664 ------------------------------------------------------------ 2025-09-08T23:03:58,664 sella/internal/int_classes.pyx:466:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,664 Error compiling Cython file: 2025-09-08T23:03:58,665 ------------------------------------------------------------ 2025-09-08T23:03:58,665 ... 2025-09-08T23:03:58,665 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,665 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,665 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,665 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,665 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,665 ^ 2025-09-08T23:03:58,665 ------------------------------------------------------------ 2025-09-08T23:03:58,665 sella/internal/int_classes.pyx:466:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,666 Error compiling Cython file: 2025-09-08T23:03:58,666 ------------------------------------------------------------ 2025-09-08T23:03:58,666 ... 2025-09-08T23:03:58,666 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,666 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,666 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,666 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,666 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,666 ^ 2025-09-08T23:03:58,666 ------------------------------------------------------------ 2025-09-08T23:03:58,667 sella/internal/int_classes.pyx:466:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,667 Error compiling Cython file: 2025-09-08T23:03:58,667 ------------------------------------------------------------ 2025-09-08T23:03:58,667 ... 2025-09-08T23:03:58,667 d2q[0, i, 0, :] = self.work1[4, i, 0, :] 2025-09-08T23:03:58,667 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,667 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,667 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,667 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,667 ^ 2025-09-08T23:03:58,668 ------------------------------------------------------------ 2025-09-08T23:03:58,668 sella/internal/int_classes.pyx:466:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,668 Error compiling Cython file: 2025-09-08T23:03:58,668 ------------------------------------------------------------ 2025-09-08T23:03:58,668 ... 2025-09-08T23:03:58,668 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,668 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,668 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,668 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,669 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,669 ^ 2025-09-08T23:03:58,669 ------------------------------------------------------------ 2025-09-08T23:03:58,669 sella/internal/int_classes.pyx:467:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,669 Error compiling Cython file: 2025-09-08T23:03:58,669 ------------------------------------------------------------ 2025-09-08T23:03:58,669 ... 2025-09-08T23:03:58,669 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,669 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,670 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,670 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,670 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,670 ^ 2025-09-08T23:03:58,670 ------------------------------------------------------------ 2025-09-08T23:03:58,670 sella/internal/int_classes.pyx:467:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,670 Error compiling Cython file: 2025-09-08T23:03:58,670 ------------------------------------------------------------ 2025-09-08T23:03:58,670 ... 2025-09-08T23:03:58,670 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,671 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,671 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,671 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,671 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,671 ^ 2025-09-08T23:03:58,671 ------------------------------------------------------------ 2025-09-08T23:03:58,671 sella/internal/int_classes.pyx:467:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,671 Error compiling Cython file: 2025-09-08T23:03:58,672 ------------------------------------------------------------ 2025-09-08T23:03:58,672 ... 2025-09-08T23:03:58,672 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,672 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,672 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,672 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,672 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,672 ^ 2025-09-08T23:03:58,672 ------------------------------------------------------------ 2025-09-08T23:03:58,672 sella/internal/int_classes.pyx:467:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,673 Error compiling Cython file: 2025-09-08T23:03:58,673 ------------------------------------------------------------ 2025-09-08T23:03:58,673 ... 2025-09-08T23:03:58,673 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,673 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,673 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,673 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,673 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,673 ^ 2025-09-08T23:03:58,673 ------------------------------------------------------------ 2025-09-08T23:03:58,674 sella/internal/int_classes.pyx:467:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,674 Error compiling Cython file: 2025-09-08T23:03:58,674 ------------------------------------------------------------ 2025-09-08T23:03:58,674 ... 2025-09-08T23:03:58,674 d2q[0, i, 1, :] = self.work1[4, i, 1, :] 2025-09-08T23:03:58,674 d2q[0, i, 3, :] = self.work1[4, i, 2, :] 2025-09-08T23:03:58,674 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,674 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,674 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,674 ^ 2025-09-08T23:03:58,675 ------------------------------------------------------------ 2025-09-08T23:03:58,675 sella/internal/int_classes.pyx:467:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,675 Error compiling Cython file: 2025-09-08T23:03:58,675 ------------------------------------------------------------ 2025-09-08T23:03:58,675 ... 2025-09-08T23:03:58,675 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,675 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,675 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,676 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,676 ^ 2025-09-08T23:03:58,676 ------------------------------------------------------------ 2025-09-08T23:03:58,676 sella/internal/int_classes.pyx:469:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,676 Error compiling Cython file: 2025-09-08T23:03:58,676 ------------------------------------------------------------ 2025-09-08T23:03:58,676 ... 2025-09-08T23:03:58,676 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,676 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,676 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,677 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,677 ^ 2025-09-08T23:03:58,677 ------------------------------------------------------------ 2025-09-08T23:03:58,677 sella/internal/int_classes.pyx:469:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,677 Error compiling Cython file: 2025-09-08T23:03:58,677 ------------------------------------------------------------ 2025-09-08T23:03:58,677 ... 2025-09-08T23:03:58,677 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,678 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,678 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,678 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,678 ^ 2025-09-08T23:03:58,678 ------------------------------------------------------------ 2025-09-08T23:03:58,678 sella/internal/int_classes.pyx:469:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,678 Error compiling Cython file: 2025-09-08T23:03:58,678 ------------------------------------------------------------ 2025-09-08T23:03:58,678 ... 2025-09-08T23:03:58,679 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,679 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,679 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,679 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,679 ^ 2025-09-08T23:03:58,679 ------------------------------------------------------------ 2025-09-08T23:03:58,679 sella/internal/int_classes.pyx:469:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,679 Error compiling Cython file: 2025-09-08T23:03:58,679 ------------------------------------------------------------ 2025-09-08T23:03:58,680 ... 2025-09-08T23:03:58,680 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,680 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,680 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,680 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,680 ^ 2025-09-08T23:03:58,680 ------------------------------------------------------------ 2025-09-08T23:03:58,680 sella/internal/int_classes.pyx:469:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,681 Error compiling Cython file: 2025-09-08T23:03:58,681 ------------------------------------------------------------ 2025-09-08T23:03:58,681 ... 2025-09-08T23:03:58,681 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,681 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,681 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,681 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,681 ^ 2025-09-08T23:03:58,681 ------------------------------------------------------------ 2025-09-08T23:03:58,681 sella/internal/int_classes.pyx:469:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,682 Error compiling Cython file: 2025-09-08T23:03:58,682 ------------------------------------------------------------ 2025-09-08T23:03:58,682 ... 2025-09-08T23:03:58,682 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,682 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,682 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,682 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,682 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,682 ^ 2025-09-08T23:03:58,682 ------------------------------------------------------------ 2025-09-08T23:03:58,683 sella/internal/int_classes.pyx:470:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,683 Error compiling Cython file: 2025-09-08T23:03:58,683 ------------------------------------------------------------ 2025-09-08T23:03:58,683 ... 2025-09-08T23:03:58,683 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,683 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,683 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,683 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,683 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,684 ^ 2025-09-08T23:03:58,684 ------------------------------------------------------------ 2025-09-08T23:03:58,684 sella/internal/int_classes.pyx:470:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,684 Error compiling Cython file: 2025-09-08T23:03:58,684 ------------------------------------------------------------ 2025-09-08T23:03:58,684 ... 2025-09-08T23:03:58,684 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,684 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,684 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,685 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,685 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,685 ^ 2025-09-08T23:03:58,685 ------------------------------------------------------------ 2025-09-08T23:03:58,685 sella/internal/int_classes.pyx:470:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,685 Error compiling Cython file: 2025-09-08T23:03:58,685 ------------------------------------------------------------ 2025-09-08T23:03:58,685 ... 2025-09-08T23:03:58,685 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,685 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,685 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,686 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,686 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,686 ^ 2025-09-08T23:03:58,686 ------------------------------------------------------------ 2025-09-08T23:03:58,686 sella/internal/int_classes.pyx:470:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,686 Error compiling Cython file: 2025-09-08T23:03:58,686 ------------------------------------------------------------ 2025-09-08T23:03:58,686 ... 2025-09-08T23:03:58,686 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,687 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,687 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,687 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,687 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,687 ^ 2025-09-08T23:03:58,687 ------------------------------------------------------------ 2025-09-08T23:03:58,687 sella/internal/int_classes.pyx:470:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,687 Error compiling Cython file: 2025-09-08T23:03:58,688 ------------------------------------------------------------ 2025-09-08T23:03:58,688 ... 2025-09-08T23:03:58,688 d2q[1, i, 0, :] = self.work1[5, i, 0, :] 2025-09-08T23:03:58,688 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,688 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,688 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,688 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,688 ^ 2025-09-08T23:03:58,688 ------------------------------------------------------------ 2025-09-08T23:03:58,688 sella/internal/int_classes.pyx:470:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,689 Error compiling Cython file: 2025-09-08T23:03:58,689 ------------------------------------------------------------ 2025-09-08T23:03:58,689 ... 2025-09-08T23:03:58,689 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,689 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,689 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,689 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,689 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,689 ^ 2025-09-08T23:03:58,689 ------------------------------------------------------------ 2025-09-08T23:03:58,690 sella/internal/int_classes.pyx:471:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,690 Error compiling Cython file: 2025-09-08T23:03:58,690 ------------------------------------------------------------ 2025-09-08T23:03:58,690 ... 2025-09-08T23:03:58,690 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,690 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,690 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,690 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,690 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,691 ^ 2025-09-08T23:03:58,691 ------------------------------------------------------------ 2025-09-08T23:03:58,691 sella/internal/int_classes.pyx:471:40: Indexing Python object not allowed without gil 2025-09-08T23:03:58,691 Error compiling Cython file: 2025-09-08T23:03:58,691 ------------------------------------------------------------ 2025-09-08T23:03:58,691 ... 2025-09-08T23:03:58,691 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,691 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,691 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,691 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,692 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,692 ^ 2025-09-08T23:03:58,692 ------------------------------------------------------------ 2025-09-08T23:03:58,692 sella/internal/int_classes.pyx:471:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,692 Error compiling Cython file: 2025-09-08T23:03:58,692 ------------------------------------------------------------ 2025-09-08T23:03:58,692 ... 2025-09-08T23:03:58,692 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,692 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,693 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,693 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,693 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,693 ^ 2025-09-08T23:03:58,693 ------------------------------------------------------------ 2025-09-08T23:03:58,693 sella/internal/int_classes.pyx:471:40: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,693 Error compiling Cython file: 2025-09-08T23:03:58,693 ------------------------------------------------------------ 2025-09-08T23:03:58,693 ... 2025-09-08T23:03:58,693 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,694 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,694 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,694 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,694 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,694 ^ 2025-09-08T23:03:58,694 ------------------------------------------------------------ 2025-09-08T23:03:58,694 sella/internal/int_classes.pyx:471:44: Converting to Python object not allowed without gil 2025-09-08T23:03:58,694 Error compiling Cython file: 2025-09-08T23:03:58,694 ------------------------------------------------------------ 2025-09-08T23:03:58,695 ... 2025-09-08T23:03:58,695 d2q[1, i, 1, :] = self.work1[5, i, 1, :] 2025-09-08T23:03:58,695 d2q[1, i, 3, :] = self.work1[5, i, 2, :] 2025-09-08T23:03:58,695 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,695 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,695 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,695 ^ 2025-09-08T23:03:58,695 ------------------------------------------------------------ 2025-09-08T23:03:58,695 sella/internal/int_classes.pyx:471:40: Constructing Python slice object not allowed without gil 2025-09-08T23:03:58,695 Error compiling Cython file: 2025-09-08T23:03:58,696 ------------------------------------------------------------ 2025-09-08T23:03:58,696 ... 2025-09-08T23:03:58,696 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,696 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,696 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,696 for i in range(3): 2025-09-08T23:03:58,696 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,696 ^ 2025-09-08T23:03:58,696 ------------------------------------------------------------ 2025-09-08T23:03:58,696 sella/internal/int_classes.pyx:474:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,697 Error compiling Cython file: 2025-09-08T23:03:58,697 ------------------------------------------------------------ 2025-09-08T23:03:58,697 ... 2025-09-08T23:03:58,697 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,697 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,697 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,697 for i in range(3): 2025-09-08T23:03:58,697 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,697 ^ 2025-09-08T23:03:58,697 ------------------------------------------------------------ 2025-09-08T23:03:58,698 sella/internal/int_classes.pyx:474:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,698 Error compiling Cython file: 2025-09-08T23:03:58,698 ------------------------------------------------------------ 2025-09-08T23:03:58,698 ... 2025-09-08T23:03:58,698 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,698 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,698 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,698 for i in range(3): 2025-09-08T23:03:58,698 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,698 ^ 2025-09-08T23:03:58,699 ------------------------------------------------------------ 2025-09-08T23:03:58,699 sella/internal/int_classes.pyx:474:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,699 Error compiling Cython file: 2025-09-08T23:03:58,699 ------------------------------------------------------------ 2025-09-08T23:03:58,699 ... 2025-09-08T23:03:58,699 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,699 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,699 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,699 for i in range(3): 2025-09-08T23:03:58,700 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,700 ^ 2025-09-08T23:03:58,700 ------------------------------------------------------------ 2025-09-08T23:03:58,700 sella/internal/int_classes.pyx:474:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,700 Error compiling Cython file: 2025-09-08T23:03:58,700 ------------------------------------------------------------ 2025-09-08T23:03:58,700 ... 2025-09-08T23:03:58,700 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,700 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,700 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,701 for i in range(3): 2025-09-08T23:03:58,701 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,701 ^ 2025-09-08T23:03:58,701 ------------------------------------------------------------ 2025-09-08T23:03:58,701 sella/internal/int_classes.pyx:474:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,701 Error compiling Cython file: 2025-09-08T23:03:58,701 ------------------------------------------------------------ 2025-09-08T23:03:58,701 ... 2025-09-08T23:03:58,701 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,701 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,702 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,702 for i in range(3): 2025-09-08T23:03:58,702 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,702 ^ 2025-09-08T23:03:58,702 ------------------------------------------------------------ 2025-09-08T23:03:58,702 sella/internal/int_classes.pyx:474:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,702 Error compiling Cython file: 2025-09-08T23:03:58,702 ------------------------------------------------------------ 2025-09-08T23:03:58,702 ... 2025-09-08T23:03:58,703 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,703 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,703 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,703 for i in range(3): 2025-09-08T23:03:58,703 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,703 ^ 2025-09-08T23:03:58,703 ------------------------------------------------------------ 2025-09-08T23:03:58,703 sella/internal/int_classes.pyx:474:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,703 Error compiling Cython file: 2025-09-08T23:03:58,704 ------------------------------------------------------------ 2025-09-08T23:03:58,704 ... 2025-09-08T23:03:58,704 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,704 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,704 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,704 for i in range(3): 2025-09-08T23:03:58,704 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,704 ^ 2025-09-08T23:03:58,704 ------------------------------------------------------------ 2025-09-08T23:03:58,704 sella/internal/int_classes.pyx:474:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,705 Error compiling Cython file: 2025-09-08T23:03:58,705 ------------------------------------------------------------ 2025-09-08T23:03:58,705 ... 2025-09-08T23:03:58,705 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,705 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,705 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,705 for i in range(3): 2025-09-08T23:03:58,705 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,705 ^ 2025-09-08T23:03:58,706 ------------------------------------------------------------ 2025-09-08T23:03:58,706 sella/internal/int_classes.pyx:474:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,706 Error compiling Cython file: 2025-09-08T23:03:58,706 ------------------------------------------------------------ 2025-09-08T23:03:58,706 ... 2025-09-08T23:03:58,706 d2q[3, i, 0, :] = self.work1[6, i, 0, :] 2025-09-08T23:03:58,706 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,706 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,706 for i in range(3): 2025-09-08T23:03:58,706 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,707 ^ 2025-09-08T23:03:58,707 ------------------------------------------------------------ 2025-09-08T23:03:58,707 sella/internal/int_classes.pyx:474:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,707 Error compiling Cython file: 2025-09-08T23:03:58,707 ------------------------------------------------------------ 2025-09-08T23:03:58,707 ... 2025-09-08T23:03:58,707 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,707 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,707 for i in range(3): 2025-09-08T23:03:58,708 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,708 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,708 ^ 2025-09-08T23:03:58,708 ------------------------------------------------------------ 2025-09-08T23:03:58,708 sella/internal/int_classes.pyx:475:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,708 Error compiling Cython file: 2025-09-08T23:03:58,708 ------------------------------------------------------------ 2025-09-08T23:03:58,708 ... 2025-09-08T23:03:58,708 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,708 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,709 for i in range(3): 2025-09-08T23:03:58,709 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,709 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,709 ^ 2025-09-08T23:03:58,709 ------------------------------------------------------------ 2025-09-08T23:03:58,709 sella/internal/int_classes.pyx:475:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,709 Error compiling Cython file: 2025-09-08T23:03:58,709 ------------------------------------------------------------ 2025-09-08T23:03:58,709 ... 2025-09-08T23:03:58,709 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,710 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,710 for i in range(3): 2025-09-08T23:03:58,710 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,710 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,710 ^ 2025-09-08T23:03:58,710 ------------------------------------------------------------ 2025-09-08T23:03:58,710 sella/internal/int_classes.pyx:475:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,710 Error compiling Cython file: 2025-09-08T23:03:58,710 ------------------------------------------------------------ 2025-09-08T23:03:58,711 ... 2025-09-08T23:03:58,711 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,711 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,711 for i in range(3): 2025-09-08T23:03:58,711 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,711 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,711 ^ 2025-09-08T23:03:58,711 ------------------------------------------------------------ 2025-09-08T23:03:58,711 sella/internal/int_classes.pyx:475:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,712 Error compiling Cython file: 2025-09-08T23:03:58,712 ------------------------------------------------------------ 2025-09-08T23:03:58,712 ... 2025-09-08T23:03:58,712 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,712 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,712 for i in range(3): 2025-09-08T23:03:58,712 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,712 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,712 ^ 2025-09-08T23:03:58,712 ------------------------------------------------------------ 2025-09-08T23:03:58,713 sella/internal/int_classes.pyx:475:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,713 Error compiling Cython file: 2025-09-08T23:03:58,713 ------------------------------------------------------------ 2025-09-08T23:03:58,713 ... 2025-09-08T23:03:58,713 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,713 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,713 for i in range(3): 2025-09-08T23:03:58,713 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,713 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,713 ^ 2025-09-08T23:03:58,714 ------------------------------------------------------------ 2025-09-08T23:03:58,714 sella/internal/int_classes.pyx:475:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,714 Error compiling Cython file: 2025-09-08T23:03:58,714 ------------------------------------------------------------ 2025-09-08T23:03:58,714 ... 2025-09-08T23:03:58,714 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,714 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,714 for i in range(3): 2025-09-08T23:03:58,714 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,714 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,715 ^ 2025-09-08T23:03:58,715 ------------------------------------------------------------ 2025-09-08T23:03:58,715 sella/internal/int_classes.pyx:475:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,715 Error compiling Cython file: 2025-09-08T23:03:58,715 ------------------------------------------------------------ 2025-09-08T23:03:58,715 ... 2025-09-08T23:03:58,715 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,715 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,715 for i in range(3): 2025-09-08T23:03:58,716 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,716 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,716 ^ 2025-09-08T23:03:58,716 ------------------------------------------------------------ 2025-09-08T23:03:58,716 sella/internal/int_classes.pyx:475:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,716 Error compiling Cython file: 2025-09-08T23:03:58,716 ------------------------------------------------------------ 2025-09-08T23:03:58,716 ... 2025-09-08T23:03:58,716 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,716 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,717 for i in range(3): 2025-09-08T23:03:58,717 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,717 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,717 ^ 2025-09-08T23:03:58,717 ------------------------------------------------------------ 2025-09-08T23:03:58,717 sella/internal/int_classes.pyx:475:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,717 Error compiling Cython file: 2025-09-08T23:03:58,717 ------------------------------------------------------------ 2025-09-08T23:03:58,717 ... 2025-09-08T23:03:58,717 d2q[3, i, 1, :] = self.work1[6, i, 1, :] 2025-09-08T23:03:58,718 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,718 for i in range(3): 2025-09-08T23:03:58,718 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,718 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,718 ^ 2025-09-08T23:03:58,718 ------------------------------------------------------------ 2025-09-08T23:03:58,718 sella/internal/int_classes.pyx:475:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,718 Error compiling Cython file: 2025-09-08T23:03:58,718 ------------------------------------------------------------ 2025-09-08T23:03:58,719 ... 2025-09-08T23:03:58,719 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,719 for i in range(3): 2025-09-08T23:03:58,719 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,719 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,719 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,719 ^ 2025-09-08T23:03:58,719 ------------------------------------------------------------ 2025-09-08T23:03:58,719 sella/internal/int_classes.pyx:476:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,719 Error compiling Cython file: 2025-09-08T23:03:58,720 ------------------------------------------------------------ 2025-09-08T23:03:58,720 ... 2025-09-08T23:03:58,720 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,720 for i in range(3): 2025-09-08T23:03:58,720 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,720 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,720 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,720 ^ 2025-09-08T23:03:58,720 ------------------------------------------------------------ 2025-09-08T23:03:58,720 sella/internal/int_classes.pyx:476:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,721 Error compiling Cython file: 2025-09-08T23:03:58,721 ------------------------------------------------------------ 2025-09-08T23:03:58,721 ... 2025-09-08T23:03:58,721 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,721 for i in range(3): 2025-09-08T23:03:58,721 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,721 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,721 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,721 ^ 2025-09-08T23:03:58,721 ------------------------------------------------------------ 2025-09-08T23:03:58,722 sella/internal/int_classes.pyx:476:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,722 Error compiling Cython file: 2025-09-08T23:03:58,722 ------------------------------------------------------------ 2025-09-08T23:03:58,722 ... 2025-09-08T23:03:58,722 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,722 for i in range(3): 2025-09-08T23:03:58,722 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,722 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,723 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,723 ^ 2025-09-08T23:03:58,723 ------------------------------------------------------------ 2025-09-08T23:03:58,723 sella/internal/int_classes.pyx:476:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,723 Error compiling Cython file: 2025-09-08T23:03:58,723 ------------------------------------------------------------ 2025-09-08T23:03:58,723 ... 2025-09-08T23:03:58,723 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,723 for i in range(3): 2025-09-08T23:03:58,724 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,724 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,724 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,724 ^ 2025-09-08T23:03:58,724 ------------------------------------------------------------ 2025-09-08T23:03:58,724 sella/internal/int_classes.pyx:476:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,724 Error compiling Cython file: 2025-09-08T23:03:58,724 ------------------------------------------------------------ 2025-09-08T23:03:58,724 ... 2025-09-08T23:03:58,724 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,725 for i in range(3): 2025-09-08T23:03:58,725 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,725 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,725 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,725 ^ 2025-09-08T23:03:58,725 ------------------------------------------------------------ 2025-09-08T23:03:58,725 sella/internal/int_classes.pyx:476:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,725 Error compiling Cython file: 2025-09-08T23:03:58,725 ------------------------------------------------------------ 2025-09-08T23:03:58,725 ... 2025-09-08T23:03:58,726 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,726 for i in range(3): 2025-09-08T23:03:58,726 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,726 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,726 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,726 ^ 2025-09-08T23:03:58,726 ------------------------------------------------------------ 2025-09-08T23:03:58,726 sella/internal/int_classes.pyx:476:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,726 Error compiling Cython file: 2025-09-08T23:03:58,727 ------------------------------------------------------------ 2025-09-08T23:03:58,727 ... 2025-09-08T23:03:58,727 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,727 for i in range(3): 2025-09-08T23:03:58,727 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,727 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,727 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,727 ^ 2025-09-08T23:03:58,727 ------------------------------------------------------------ 2025-09-08T23:03:58,727 sella/internal/int_classes.pyx:476:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,728 Error compiling Cython file: 2025-09-08T23:03:58,728 ------------------------------------------------------------ 2025-09-08T23:03:58,728 ... 2025-09-08T23:03:58,728 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,728 for i in range(3): 2025-09-08T23:03:58,728 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,728 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,728 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,728 ^ 2025-09-08T23:03:58,728 ------------------------------------------------------------ 2025-09-08T23:03:58,729 sella/internal/int_classes.pyx:476:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,729 Error compiling Cython file: 2025-09-08T23:03:58,729 ------------------------------------------------------------ 2025-09-08T23:03:58,729 ... 2025-09-08T23:03:58,729 d2q[3, i, 3, :] = self.work1[6, i, 2, :] 2025-09-08T23:03:58,729 for i in range(3): 2025-09-08T23:03:58,729 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,729 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,729 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,729 ^ 2025-09-08T23:03:58,730 ------------------------------------------------------------ 2025-09-08T23:03:58,730 sella/internal/int_classes.pyx:476:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,730 Error compiling Cython file: 2025-09-08T23:03:58,730 ------------------------------------------------------------ 2025-09-08T23:03:58,730 ... 2025-09-08T23:03:58,730 for i in range(3): 2025-09-08T23:03:58,730 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,730 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,730 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,730 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,731 ^ 2025-09-08T23:03:58,731 ------------------------------------------------------------ 2025-09-08T23:03:58,731 sella/internal/int_classes.pyx:478:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,731 Error compiling Cython file: 2025-09-08T23:03:58,731 ------------------------------------------------------------ 2025-09-08T23:03:58,731 ... 2025-09-08T23:03:58,731 for i in range(3): 2025-09-08T23:03:58,731 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,731 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,731 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,732 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,732 ^ 2025-09-08T23:03:58,732 ------------------------------------------------------------ 2025-09-08T23:03:58,732 sella/internal/int_classes.pyx:478:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,732 Error compiling Cython file: 2025-09-08T23:03:58,732 ------------------------------------------------------------ 2025-09-08T23:03:58,732 ... 2025-09-08T23:03:58,732 for i in range(3): 2025-09-08T23:03:58,732 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,733 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,733 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,733 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,733 ^ 2025-09-08T23:03:58,733 ------------------------------------------------------------ 2025-09-08T23:03:58,733 sella/internal/int_classes.pyx:478:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,733 Error compiling Cython file: 2025-09-08T23:03:58,733 ------------------------------------------------------------ 2025-09-08T23:03:58,733 ... 2025-09-08T23:03:58,734 for i in range(3): 2025-09-08T23:03:58,734 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,734 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,734 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,734 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,734 ^ 2025-09-08T23:03:58,734 ------------------------------------------------------------ 2025-09-08T23:03:58,734 sella/internal/int_classes.pyx:478:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,734 Error compiling Cython file: 2025-09-08T23:03:58,734 ------------------------------------------------------------ 2025-09-08T23:03:58,735 ... 2025-09-08T23:03:58,735 for i in range(3): 2025-09-08T23:03:58,735 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,735 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,735 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,735 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,735 ^ 2025-09-08T23:03:58,735 ------------------------------------------------------------ 2025-09-08T23:03:58,735 sella/internal/int_classes.pyx:478:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,736 Error compiling Cython file: 2025-09-08T23:03:58,736 ------------------------------------------------------------ 2025-09-08T23:03:58,736 ... 2025-09-08T23:03:58,736 for i in range(3): 2025-09-08T23:03:58,736 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,736 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,736 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,736 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,736 ^ 2025-09-08T23:03:58,736 ------------------------------------------------------------ 2025-09-08T23:03:58,737 sella/internal/int_classes.pyx:478:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,737 Error compiling Cython file: 2025-09-08T23:03:58,737 ------------------------------------------------------------ 2025-09-08T23:03:58,737 ... 2025-09-08T23:03:58,737 for i in range(3): 2025-09-08T23:03:58,737 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,737 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,737 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,737 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,737 ^ 2025-09-08T23:03:58,737 ------------------------------------------------------------ 2025-09-08T23:03:58,738 sella/internal/int_classes.pyx:478:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,738 Error compiling Cython file: 2025-09-08T23:03:58,738 ------------------------------------------------------------ 2025-09-08T23:03:58,738 ... 2025-09-08T23:03:58,738 for i in range(3): 2025-09-08T23:03:58,738 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,738 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,738 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,738 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,739 ^ 2025-09-08T23:03:58,739 ------------------------------------------------------------ 2025-09-08T23:03:58,739 sella/internal/int_classes.pyx:478:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,739 Error compiling Cython file: 2025-09-08T23:03:58,739 ------------------------------------------------------------ 2025-09-08T23:03:58,739 ... 2025-09-08T23:03:58,739 for i in range(3): 2025-09-08T23:03:58,739 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,739 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,740 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,740 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,740 ^ 2025-09-08T23:03:58,740 ------------------------------------------------------------ 2025-09-08T23:03:58,740 sella/internal/int_classes.pyx:478:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,740 Error compiling Cython file: 2025-09-08T23:03:58,740 ------------------------------------------------------------ 2025-09-08T23:03:58,740 ... 2025-09-08T23:03:58,740 for i in range(3): 2025-09-08T23:03:58,741 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,741 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,741 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,741 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,741 ^ 2025-09-08T23:03:58,741 ------------------------------------------------------------ 2025-09-08T23:03:58,741 sella/internal/int_classes.pyx:478:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,741 Error compiling Cython file: 2025-09-08T23:03:58,741 ------------------------------------------------------------ 2025-09-08T23:03:58,742 ... 2025-09-08T23:03:58,742 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,742 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,742 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,742 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,742 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,742 ^ 2025-09-08T23:03:58,742 ------------------------------------------------------------ 2025-09-08T23:03:58,742 sella/internal/int_classes.pyx:479:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,743 Error compiling Cython file: 2025-09-08T23:03:58,743 ------------------------------------------------------------ 2025-09-08T23:03:58,743 ... 2025-09-08T23:03:58,743 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,743 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,743 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,743 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,743 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,743 ^ 2025-09-08T23:03:58,743 ------------------------------------------------------------ 2025-09-08T23:03:58,743 sella/internal/int_classes.pyx:479:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,744 Error compiling Cython file: 2025-09-08T23:03:58,744 ------------------------------------------------------------ 2025-09-08T23:03:58,744 ... 2025-09-08T23:03:58,744 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,744 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,744 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,744 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,744 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,744 ^ 2025-09-08T23:03:58,744 ------------------------------------------------------------ 2025-09-08T23:03:58,745 sella/internal/int_classes.pyx:479:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,745 Error compiling Cython file: 2025-09-08T23:03:58,745 ------------------------------------------------------------ 2025-09-08T23:03:58,745 ... 2025-09-08T23:03:58,745 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,745 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,745 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,745 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,745 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,745 ^ 2025-09-08T23:03:58,746 ------------------------------------------------------------ 2025-09-08T23:03:58,746 sella/internal/int_classes.pyx:479:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,746 Error compiling Cython file: 2025-09-08T23:03:58,746 ------------------------------------------------------------ 2025-09-08T23:03:58,746 ... 2025-09-08T23:03:58,746 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,746 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,746 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,746 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,747 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,747 ^ 2025-09-08T23:03:58,747 ------------------------------------------------------------ 2025-09-08T23:03:58,747 sella/internal/int_classes.pyx:479:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,747 Error compiling Cython file: 2025-09-08T23:03:58,747 ------------------------------------------------------------ 2025-09-08T23:03:58,747 ... 2025-09-08T23:03:58,747 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,747 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,747 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,748 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,748 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,748 ^ 2025-09-08T23:03:58,748 ------------------------------------------------------------ 2025-09-08T23:03:58,748 sella/internal/int_classes.pyx:479:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,748 Error compiling Cython file: 2025-09-08T23:03:58,748 ------------------------------------------------------------ 2025-09-08T23:03:58,748 ... 2025-09-08T23:03:58,748 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,749 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,749 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,749 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,749 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,749 ^ 2025-09-08T23:03:58,749 ------------------------------------------------------------ 2025-09-08T23:03:58,749 sella/internal/int_classes.pyx:479:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,749 Error compiling Cython file: 2025-09-08T23:03:58,749 ------------------------------------------------------------ 2025-09-08T23:03:58,749 ... 2025-09-08T23:03:58,750 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,750 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,750 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,750 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,750 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,750 ^ 2025-09-08T23:03:58,750 ------------------------------------------------------------ 2025-09-08T23:03:58,750 sella/internal/int_classes.pyx:479:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,750 Error compiling Cython file: 2025-09-08T23:03:58,751 ------------------------------------------------------------ 2025-09-08T23:03:58,751 ... 2025-09-08T23:03:58,751 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,751 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,751 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,751 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,751 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,751 ^ 2025-09-08T23:03:58,751 ------------------------------------------------------------ 2025-09-08T23:03:58,751 sella/internal/int_classes.pyx:479:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,752 Error compiling Cython file: 2025-09-08T23:03:58,752 ------------------------------------------------------------ 2025-09-08T23:03:58,752 ... 2025-09-08T23:03:58,752 my_daxpy(sign, self.work1[7, i, 0], d2q[2, i, 2]) 2025-09-08T23:03:58,752 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,752 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,752 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,752 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,752 ^ 2025-09-08T23:03:58,752 ------------------------------------------------------------ 2025-09-08T23:03:58,753 sella/internal/int_classes.pyx:479:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,753 Error compiling Cython file: 2025-09-08T23:03:58,753 ------------------------------------------------------------ 2025-09-08T23:03:58,753 ... 2025-09-08T23:03:58,753 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,753 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,753 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,753 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,753 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,753 ^ 2025-09-08T23:03:58,754 ------------------------------------------------------------ 2025-09-08T23:03:58,754 sella/internal/int_classes.pyx:480:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,754 Error compiling Cython file: 2025-09-08T23:03:58,754 ------------------------------------------------------------ 2025-09-08T23:03:58,754 ... 2025-09-08T23:03:58,754 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,754 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,754 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,754 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,754 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,755 ^ 2025-09-08T23:03:58,755 ------------------------------------------------------------ 2025-09-08T23:03:58,755 sella/internal/int_classes.pyx:480:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,755 Error compiling Cython file: 2025-09-08T23:03:58,755 ------------------------------------------------------------ 2025-09-08T23:03:58,755 ... 2025-09-08T23:03:58,755 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,755 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,756 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,756 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,756 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,756 ^ 2025-09-08T23:03:58,756 ------------------------------------------------------------ 2025-09-08T23:03:58,756 sella/internal/int_classes.pyx:480:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,756 Error compiling Cython file: 2025-09-08T23:03:58,756 ------------------------------------------------------------ 2025-09-08T23:03:58,756 ... 2025-09-08T23:03:58,757 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,757 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,757 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,757 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,757 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,757 ^ 2025-09-08T23:03:58,757 ------------------------------------------------------------ 2025-09-08T23:03:58,757 sella/internal/int_classes.pyx:480:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,757 Error compiling Cython file: 2025-09-08T23:03:58,757 ------------------------------------------------------------ 2025-09-08T23:03:58,758 ... 2025-09-08T23:03:58,758 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,758 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,758 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,758 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,758 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,758 ^ 2025-09-08T23:03:58,758 ------------------------------------------------------------ 2025-09-08T23:03:58,758 sella/internal/int_classes.pyx:480:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,759 Error compiling Cython file: 2025-09-08T23:03:58,759 ------------------------------------------------------------ 2025-09-08T23:03:58,759 ... 2025-09-08T23:03:58,759 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,759 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,759 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,759 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,759 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,759 ^ 2025-09-08T23:03:58,759 ------------------------------------------------------------ 2025-09-08T23:03:58,760 sella/internal/int_classes.pyx:480:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,760 Error compiling Cython file: 2025-09-08T23:03:58,760 ------------------------------------------------------------ 2025-09-08T23:03:58,760 ... 2025-09-08T23:03:58,760 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,760 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,760 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,760 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,760 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,760 ^ 2025-09-08T23:03:58,760 ------------------------------------------------------------ 2025-09-08T23:03:58,761 sella/internal/int_classes.pyx:480:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,761 Error compiling Cython file: 2025-09-08T23:03:58,761 ------------------------------------------------------------ 2025-09-08T23:03:58,761 ... 2025-09-08T23:03:58,761 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,761 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,761 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,761 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,761 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,762 ^ 2025-09-08T23:03:58,762 ------------------------------------------------------------ 2025-09-08T23:03:58,762 sella/internal/int_classes.pyx:480:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,762 Error compiling Cython file: 2025-09-08T23:03:58,762 ------------------------------------------------------------ 2025-09-08T23:03:58,762 ... 2025-09-08T23:03:58,762 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,762 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,762 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,763 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,763 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,763 ^ 2025-09-08T23:03:58,763 ------------------------------------------------------------ 2025-09-08T23:03:58,763 sella/internal/int_classes.pyx:480:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,763 Error compiling Cython file: 2025-09-08T23:03:58,763 ------------------------------------------------------------ 2025-09-08T23:03:58,763 ... 2025-09-08T23:03:58,763 my_daxpy(sign, self.work1[7, i, 1], d2q[2, i, 1]) 2025-09-08T23:03:58,763 my_daxpy(sign, self.work1[7, i, 2], d2q[2, i, 3]) 2025-09-08T23:03:58,764 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,764 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,764 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,764 ^ 2025-09-08T23:03:58,764 ------------------------------------------------------------ 2025-09-08T23:03:58,764 sella/internal/int_classes.pyx:480:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,764 Error compiling Cython file: 2025-09-08T23:03:58,764 ------------------------------------------------------------ 2025-09-08T23:03:58,764 ... 2025-09-08T23:03:58,765 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,765 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,765 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,765 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,765 ^ 2025-09-08T23:03:58,765 ------------------------------------------------------------ 2025-09-08T23:03:58,765 sella/internal/int_classes.pyx:482:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,765 Error compiling Cython file: 2025-09-08T23:03:58,765 ------------------------------------------------------------ 2025-09-08T23:03:58,766 ... 2025-09-08T23:03:58,766 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,766 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,766 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,766 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,766 ^ 2025-09-08T23:03:58,766 ------------------------------------------------------------ 2025-09-08T23:03:58,766 sella/internal/int_classes.pyx:482:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,767 Error compiling Cython file: 2025-09-08T23:03:58,767 ------------------------------------------------------------ 2025-09-08T23:03:58,767 ... 2025-09-08T23:03:58,767 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,767 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,767 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,767 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,767 ^ 2025-09-08T23:03:58,767 ------------------------------------------------------------ 2025-09-08T23:03:58,768 sella/internal/int_classes.pyx:482:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,768 Error compiling Cython file: 2025-09-08T23:03:58,768 ------------------------------------------------------------ 2025-09-08T23:03:58,768 ... 2025-09-08T23:03:58,768 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,768 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,768 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,768 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,768 ^ 2025-09-08T23:03:58,768 ------------------------------------------------------------ 2025-09-08T23:03:58,769 sella/internal/int_classes.pyx:482:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,769 Error compiling Cython file: 2025-09-08T23:03:58,769 ------------------------------------------------------------ 2025-09-08T23:03:58,769 ... 2025-09-08T23:03:58,769 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,769 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,769 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,769 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,770 ^ 2025-09-08T23:03:58,770 ------------------------------------------------------------ 2025-09-08T23:03:58,770 sella/internal/int_classes.pyx:482:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,770 Error compiling Cython file: 2025-09-08T23:03:58,770 ------------------------------------------------------------ 2025-09-08T23:03:58,770 ... 2025-09-08T23:03:58,770 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,770 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,770 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,771 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,771 ^ 2025-09-08T23:03:58,771 ------------------------------------------------------------ 2025-09-08T23:03:58,771 sella/internal/int_classes.pyx:482:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,771 Error compiling Cython file: 2025-09-08T23:03:58,771 ------------------------------------------------------------ 2025-09-08T23:03:58,771 ... 2025-09-08T23:03:58,771 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,772 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,772 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,772 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,772 ^ 2025-09-08T23:03:58,772 ------------------------------------------------------------ 2025-09-08T23:03:58,772 sella/internal/int_classes.pyx:482:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,772 Error compiling Cython file: 2025-09-08T23:03:58,772 ------------------------------------------------------------ 2025-09-08T23:03:58,772 ... 2025-09-08T23:03:58,773 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,773 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,773 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,773 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,773 ^ 2025-09-08T23:03:58,773 ------------------------------------------------------------ 2025-09-08T23:03:58,773 sella/internal/int_classes.pyx:482:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,773 Error compiling Cython file: 2025-09-08T23:03:58,774 ------------------------------------------------------------ 2025-09-08T23:03:58,774 ... 2025-09-08T23:03:58,774 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,774 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,774 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,774 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,774 ^ 2025-09-08T23:03:58,774 ------------------------------------------------------------ 2025-09-08T23:03:58,774 sella/internal/int_classes.pyx:482:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,775 Error compiling Cython file: 2025-09-08T23:03:58,775 ------------------------------------------------------------ 2025-09-08T23:03:58,775 ... 2025-09-08T23:03:58,775 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,775 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,775 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,775 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,775 ^ 2025-09-08T23:03:58,776 ------------------------------------------------------------ 2025-09-08T23:03:58,776 sella/internal/int_classes.pyx:482:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,776 Error compiling Cython file: 2025-09-08T23:03:58,776 ------------------------------------------------------------ 2025-09-08T23:03:58,776 ... 2025-09-08T23:03:58,776 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,776 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,776 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,776 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,777 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,777 ^ 2025-09-08T23:03:58,777 ------------------------------------------------------------ 2025-09-08T23:03:58,777 sella/internal/int_classes.pyx:483:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,777 Error compiling Cython file: 2025-09-08T23:03:58,777 ------------------------------------------------------------ 2025-09-08T23:03:58,777 ... 2025-09-08T23:03:58,777 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,777 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,777 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,778 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,778 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,778 ^ 2025-09-08T23:03:58,778 ------------------------------------------------------------ 2025-09-08T23:03:58,778 sella/internal/int_classes.pyx:483:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,778 Error compiling Cython file: 2025-09-08T23:03:58,778 ------------------------------------------------------------ 2025-09-08T23:03:58,778 ... 2025-09-08T23:03:58,778 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,778 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,779 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,779 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,779 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,779 ^ 2025-09-08T23:03:58,779 ------------------------------------------------------------ 2025-09-08T23:03:58,779 sella/internal/int_classes.pyx:483:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,779 Error compiling Cython file: 2025-09-08T23:03:58,779 ------------------------------------------------------------ 2025-09-08T23:03:58,779 ... 2025-09-08T23:03:58,780 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,780 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,780 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,780 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,780 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,780 ^ 2025-09-08T23:03:58,780 ------------------------------------------------------------ 2025-09-08T23:03:58,780 sella/internal/int_classes.pyx:483:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,780 Error compiling Cython file: 2025-09-08T23:03:58,780 ------------------------------------------------------------ 2025-09-08T23:03:58,781 ... 2025-09-08T23:03:58,781 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,781 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,781 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,781 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,781 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,781 ^ 2025-09-08T23:03:58,781 ------------------------------------------------------------ 2025-09-08T23:03:58,781 sella/internal/int_classes.pyx:483:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,782 Error compiling Cython file: 2025-09-08T23:03:58,782 ------------------------------------------------------------ 2025-09-08T23:03:58,782 ... 2025-09-08T23:03:58,782 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,782 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,782 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,782 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,782 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,782 ^ 2025-09-08T23:03:58,782 ------------------------------------------------------------ 2025-09-08T23:03:58,783 sella/internal/int_classes.pyx:483:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,783 Error compiling Cython file: 2025-09-08T23:03:58,783 ------------------------------------------------------------ 2025-09-08T23:03:58,783 ... 2025-09-08T23:03:58,783 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,783 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,783 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,783 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,783 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,783 ^ 2025-09-08T23:03:58,784 ------------------------------------------------------------ 2025-09-08T23:03:58,784 sella/internal/int_classes.pyx:483:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,784 Error compiling Cython file: 2025-09-08T23:03:58,784 ------------------------------------------------------------ 2025-09-08T23:03:58,784 ... 2025-09-08T23:03:58,784 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,784 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,784 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,784 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,785 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,785 ^ 2025-09-08T23:03:58,785 ------------------------------------------------------------ 2025-09-08T23:03:58,785 sella/internal/int_classes.pyx:483:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,785 Error compiling Cython file: 2025-09-08T23:03:58,785 ------------------------------------------------------------ 2025-09-08T23:03:58,785 ... 2025-09-08T23:03:58,785 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,785 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,785 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,786 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,786 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,786 ^ 2025-09-08T23:03:58,786 ------------------------------------------------------------ 2025-09-08T23:03:58,786 sella/internal/int_classes.pyx:483:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,786 Error compiling Cython file: 2025-09-08T23:03:58,786 ------------------------------------------------------------ 2025-09-08T23:03:58,786 ... 2025-09-08T23:03:58,786 my_daxpy(sign, self.work1[8, i, 0], d2q[1, i, 2]) 2025-09-08T23:03:58,786 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,787 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,787 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,787 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,787 ^ 2025-09-08T23:03:58,787 ------------------------------------------------------------ 2025-09-08T23:03:58,787 sella/internal/int_classes.pyx:483:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,787 Error compiling Cython file: 2025-09-08T23:03:58,787 ------------------------------------------------------------ 2025-09-08T23:03:58,787 ... 2025-09-08T23:03:58,788 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,788 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,788 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,788 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,788 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,788 ^ 2025-09-08T23:03:58,788 ------------------------------------------------------------ 2025-09-08T23:03:58,788 sella/internal/int_classes.pyx:484:20: Discarding owned Python object not allowed without gil 2025-09-08T23:03:58,789 Error compiling Cython file: 2025-09-08T23:03:58,789 ------------------------------------------------------------ 2025-09-08T23:03:58,789 ... 2025-09-08T23:03:58,789 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,789 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,789 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,789 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,789 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,789 ^ 2025-09-08T23:03:58,789 ------------------------------------------------------------ 2025-09-08T23:03:58,790 sella/internal/int_classes.pyx:484:20: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,790 Error compiling Cython file: 2025-09-08T23:03:58,790 ------------------------------------------------------------ 2025-09-08T23:03:58,790 ... 2025-09-08T23:03:58,790 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,790 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,790 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,790 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,790 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,790 ^ 2025-09-08T23:03:58,791 ------------------------------------------------------------ 2025-09-08T23:03:58,791 sella/internal/int_classes.pyx:484:12: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,791 Error compiling Cython file: 2025-09-08T23:03:58,791 ------------------------------------------------------------ 2025-09-08T23:03:58,791 ... 2025-09-08T23:03:58,791 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,791 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,791 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,791 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,791 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,792 ^ 2025-09-08T23:03:58,792 ------------------------------------------------------------ 2025-09-08T23:03:58,792 sella/internal/int_classes.pyx:484:20: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,792 Error compiling Cython file: 2025-09-08T23:03:58,792 ------------------------------------------------------------ 2025-09-08T23:03:58,792 ... 2025-09-08T23:03:58,792 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,792 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,792 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,793 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,793 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,793 ^ 2025-09-08T23:03:58,793 ------------------------------------------------------------ 2025-09-08T23:03:58,793 sella/internal/int_classes.pyx:484:21: Converting to Python object not allowed without gil 2025-09-08T23:03:58,793 Error compiling Cython file: 2025-09-08T23:03:58,793 ------------------------------------------------------------ 2025-09-08T23:03:58,793 ... 2025-09-08T23:03:58,793 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,793 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,794 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,794 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,794 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,794 ^ 2025-09-08T23:03:58,794 ------------------------------------------------------------ 2025-09-08T23:03:58,794 sella/internal/int_classes.pyx:484:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,794 Error compiling Cython file: 2025-09-08T23:03:58,794 ------------------------------------------------------------ 2025-09-08T23:03:58,794 ... 2025-09-08T23:03:58,794 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,795 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,795 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,795 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,795 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,795 ^ 2025-09-08T23:03:58,795 ------------------------------------------------------------ 2025-09-08T23:03:58,795 sella/internal/int_classes.pyx:484:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,795 Error compiling Cython file: 2025-09-08T23:03:58,795 ------------------------------------------------------------ 2025-09-08T23:03:58,796 ... 2025-09-08T23:03:58,796 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,796 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,796 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,796 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,796 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,796 ^ 2025-09-08T23:03:58,796 ------------------------------------------------------------ 2025-09-08T23:03:58,796 sella/internal/int_classes.pyx:484:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,797 Error compiling Cython file: 2025-09-08T23:03:58,797 ------------------------------------------------------------ 2025-09-08T23:03:58,797 ... 2025-09-08T23:03:58,797 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,797 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,797 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,797 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,797 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,797 ^ 2025-09-08T23:03:58,797 ------------------------------------------------------------ 2025-09-08T23:03:58,797 sella/internal/int_classes.pyx:484:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,798 Error compiling Cython file: 2025-09-08T23:03:58,798 ------------------------------------------------------------ 2025-09-08T23:03:58,798 ... 2025-09-08T23:03:58,798 my_daxpy(sign, self.work1[8, i, 1], d2q[1, i, 1]) 2025-09-08T23:03:58,798 my_daxpy(sign, self.work1[8, i, 2], d2q[1, i, 3]) 2025-09-08T23:03:58,798 my_daxpy(sign, self.work1[9, i, 0], d2q[3, i, 2]) 2025-09-08T23:03:58,798 my_daxpy(sign, self.work1[9, i, 1], d2q[3, i, 1]) 2025-09-08T23:03:58,798 my_daxpy(sign, self.work1[9, i, 2], d2q[3, i, 3]) 2025-09-08T23:03:58,798 ^ 2025-09-08T23:03:58,798 ------------------------------------------------------------ 2025-09-08T23:03:58,799 sella/internal/int_classes.pyx:484:51: Converting to Python object not allowed without gil 2025-09-08T23:03:58,799 Error compiling Cython file: 2025-09-08T23:03:58,799 ------------------------------------------------------------ 2025-09-08T23:03:58,799 ... 2025-09-08T23:03:58,799 cdef double conv 2025-09-08T23:03:58,799 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,799 # has been released 2025-09-08T23:03:58,799 with nogil: 2025-09-08T23:03:58,799 for i in range(self.nbonds): 2025-09-08T23:03:58,800 ^ 2025-09-08T23:03:58,800 ------------------------------------------------------------ 2025-09-08T23:03:58,800 sella/internal/int_classes.pyx:522:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,800 Error compiling Cython file: 2025-09-08T23:03:58,800 ------------------------------------------------------------ 2025-09-08T23:03:58,800 ... 2025-09-08T23:03:58,800 cdef double conv 2025-09-08T23:03:58,800 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,800 # has been released 2025-09-08T23:03:58,800 with nogil: 2025-09-08T23:03:58,801 for i in range(self.nbonds): 2025-09-08T23:03:58,801 ^ 2025-09-08T23:03:58,801 ------------------------------------------------------------ 2025-09-08T23:03:58,801 sella/internal/int_classes.pyx:522:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,801 Error compiling Cython file: 2025-09-08T23:03:58,801 ------------------------------------------------------------ 2025-09-08T23:03:58,801 ... 2025-09-08T23:03:58,801 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,801 # has been released 2025-09-08T23:03:58,802 with nogil: 2025-09-08T23:03:58,802 for i in range(self.nbonds): 2025-09-08T23:03:58,802 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,802 ^ 2025-09-08T23:03:58,802 ------------------------------------------------------------ 2025-09-08T23:03:58,802 sella/internal/int_classes.pyx:523:33: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,802 Error compiling Cython file: 2025-09-08T23:03:58,802 ------------------------------------------------------------ 2025-09-08T23:03:58,802 ... 2025-09-08T23:03:58,803 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,803 # has been released 2025-09-08T23:03:58,803 with nogil: 2025-09-08T23:03:58,803 for i in range(self.nbonds): 2025-09-08T23:03:58,803 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,803 ^ 2025-09-08T23:03:58,803 ------------------------------------------------------------ 2025-09-08T23:03:58,803 sella/internal/int_classes.pyx:523:33: Indexing Python object not allowed without gil 2025-09-08T23:03:58,803 Error compiling Cython file: 2025-09-08T23:03:58,803 ------------------------------------------------------------ 2025-09-08T23:03:58,804 ... 2025-09-08T23:03:58,804 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,804 # has been released 2025-09-08T23:03:58,804 with nogil: 2025-09-08T23:03:58,804 for i in range(self.nbonds): 2025-09-08T23:03:58,804 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,804 ^ 2025-09-08T23:03:58,804 ------------------------------------------------------------ 2025-09-08T23:03:58,804 sella/internal/int_classes.pyx:523:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,804 Error compiling Cython file: 2025-09-08T23:03:58,805 ------------------------------------------------------------ 2025-09-08T23:03:58,805 ... 2025-09-08T23:03:58,805 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,805 # has been released 2025-09-08T23:03:58,805 with nogil: 2025-09-08T23:03:58,805 for i in range(self.nbonds): 2025-09-08T23:03:58,805 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,805 ^ 2025-09-08T23:03:58,805 ------------------------------------------------------------ 2025-09-08T23:03:58,806 sella/internal/int_classes.pyx:523:33: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,806 Error compiling Cython file: 2025-09-08T23:03:58,806 ------------------------------------------------------------ 2025-09-08T23:03:58,806 ... 2025-09-08T23:03:58,806 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,806 # has been released 2025-09-08T23:03:58,806 with nogil: 2025-09-08T23:03:58,806 for i in range(self.nbonds): 2025-09-08T23:03:58,806 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,806 ^ 2025-09-08T23:03:58,807 ------------------------------------------------------------ 2025-09-08T23:03:58,807 sella/internal/int_classes.pyx:523:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,807 Error compiling Cython file: 2025-09-08T23:03:58,807 ------------------------------------------------------------ 2025-09-08T23:03:58,807 ... 2025-09-08T23:03:58,807 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,807 # has been released 2025-09-08T23:03:58,807 with nogil: 2025-09-08T23:03:58,807 for i in range(self.nbonds): 2025-09-08T23:03:58,807 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,808 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,808 ^ 2025-09-08T23:03:58,808 ------------------------------------------------------------ 2025-09-08T23:03:58,808 sella/internal/int_classes.pyx:524:33: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,808 Error compiling Cython file: 2025-09-08T23:03:58,808 ------------------------------------------------------------ 2025-09-08T23:03:58,808 ... 2025-09-08T23:03:58,808 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,808 # has been released 2025-09-08T23:03:58,808 with nogil: 2025-09-08T23:03:58,809 for i in range(self.nbonds): 2025-09-08T23:03:58,809 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,809 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,809 ^ 2025-09-08T23:03:58,809 ------------------------------------------------------------ 2025-09-08T23:03:58,809 sella/internal/int_classes.pyx:524:33: Indexing Python object not allowed without gil 2025-09-08T23:03:58,809 Error compiling Cython file: 2025-09-08T23:03:58,809 ------------------------------------------------------------ 2025-09-08T23:03:58,809 ... 2025-09-08T23:03:58,809 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,809 # has been released 2025-09-08T23:03:58,810 with nogil: 2025-09-08T23:03:58,810 for i in range(self.nbonds): 2025-09-08T23:03:58,810 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,810 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,810 ^ 2025-09-08T23:03:58,810 ------------------------------------------------------------ 2025-09-08T23:03:58,810 sella/internal/int_classes.pyx:524:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,810 Error compiling Cython file: 2025-09-08T23:03:58,810 ------------------------------------------------------------ 2025-09-08T23:03:58,810 ... 2025-09-08T23:03:58,811 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,811 # has been released 2025-09-08T23:03:58,811 with nogil: 2025-09-08T23:03:58,811 for i in range(self.nbonds): 2025-09-08T23:03:58,811 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,811 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,811 ^ 2025-09-08T23:03:58,811 ------------------------------------------------------------ 2025-09-08T23:03:58,811 sella/internal/int_classes.pyx:524:33: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,811 Error compiling Cython file: 2025-09-08T23:03:58,812 ------------------------------------------------------------ 2025-09-08T23:03:58,812 ... 2025-09-08T23:03:58,812 # FIXME: for some reason, this fails at runtime when the gil 2025-09-08T23:03:58,812 # has been released 2025-09-08T23:03:58,812 with nogil: 2025-09-08T23:03:58,812 for i in range(self.nbonds): 2025-09-08T23:03:58,812 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,812 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,812 ^ 2025-09-08T23:03:58,812 ------------------------------------------------------------ 2025-09-08T23:03:58,812 sella/internal/int_classes.pyx:524:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,813 Error compiling Cython file: 2025-09-08T23:03:58,813 ------------------------------------------------------------ 2025-09-08T23:03:58,813 ... 2025-09-08T23:03:58,813 with nogil: 2025-09-08T23:03:58,813 for i in range(self.nbonds): 2025-09-08T23:03:58,813 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,813 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,813 for i in range(self.nreal): 2025-09-08T23:03:58,813 ^ 2025-09-08T23:03:58,813 ------------------------------------------------------------ 2025-09-08T23:03:58,814 sella/internal/int_classes.pyx:526:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,814 Error compiling Cython file: 2025-09-08T23:03:58,814 ------------------------------------------------------------ 2025-09-08T23:03:58,814 ... 2025-09-08T23:03:58,814 with nogil: 2025-09-08T23:03:58,814 for i in range(self.nbonds): 2025-09-08T23:03:58,814 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,814 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,814 for i in range(self.nreal): 2025-09-08T23:03:58,814 ^ 2025-09-08T23:03:58,815 ------------------------------------------------------------ 2025-09-08T23:03:58,815 sella/internal/int_classes.pyx:526:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,815 Error compiling Cython file: 2025-09-08T23:03:58,815 ------------------------------------------------------------ 2025-09-08T23:03:58,815 ... 2025-09-08T23:03:58,815 for i in range(self.nbonds): 2025-09-08T23:03:58,815 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,815 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,815 for i in range(self.nreal): 2025-09-08T23:03:58,816 if self.dinds[i] != -1: 2025-09-08T23:03:58,816 ^ 2025-09-08T23:03:58,816 ------------------------------------------------------------ 2025-09-08T23:03:58,816 sella/internal/int_classes.pyx:527:29: Indexing Python object not allowed without gil 2025-09-08T23:03:58,816 Error compiling Cython file: 2025-09-08T23:03:58,816 ------------------------------------------------------------ 2025-09-08T23:03:58,816 ... 2025-09-08T23:03:58,816 for i in range(self.nbonds): 2025-09-08T23:03:58,816 nbonds[self.bonds[i, 0]] += 1 2025-09-08T23:03:58,816 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,817 for i in range(self.nreal): 2025-09-08T23:03:58,817 if self.dinds[i] != -1: 2025-09-08T23:03:58,817 ^ 2025-09-08T23:03:58,817 ------------------------------------------------------------ 2025-09-08T23:03:58,817 sella/internal/int_classes.pyx:527:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,817 Error compiling Cython file: 2025-09-08T23:03:58,817 ------------------------------------------------------------ 2025-09-08T23:03:58,817 ... 2025-09-08T23:03:58,817 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,818 for i in range(self.nreal): 2025-09-08T23:03:58,818 if self.dinds[i] != -1: 2025-09-08T23:03:58,818 nbonds[i] += 1 2025-09-08T23:03:58,818 nbonds[self.dinds[i]] += 1 2025-09-08T23:03:58,818 ^ 2025-09-08T23:03:58,818 ------------------------------------------------------------ 2025-09-08T23:03:58,818 sella/internal/int_classes.pyx:529:37: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,818 Error compiling Cython file: 2025-09-08T23:03:58,818 ------------------------------------------------------------ 2025-09-08T23:03:58,818 ... 2025-09-08T23:03:58,818 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,819 for i in range(self.nreal): 2025-09-08T23:03:58,819 if self.dinds[i] != -1: 2025-09-08T23:03:58,819 nbonds[i] += 1 2025-09-08T23:03:58,819 nbonds[self.dinds[i]] += 1 2025-09-08T23:03:58,819 ^ 2025-09-08T23:03:58,819 ------------------------------------------------------------ 2025-09-08T23:03:58,819 sella/internal/int_classes.pyx:529:37: Indexing Python object not allowed without gil 2025-09-08T23:03:58,819 Error compiling Cython file: 2025-09-08T23:03:58,819 ------------------------------------------------------------ 2025-09-08T23:03:58,820 ... 2025-09-08T23:03:58,820 nbonds[self.bonds[i, 1]] += 1 2025-09-08T23:03:58,820 for i in range(self.nreal): 2025-09-08T23:03:58,820 if self.dinds[i] != -1: 2025-09-08T23:03:58,820 nbonds[i] += 1 2025-09-08T23:03:58,820 nbonds[self.dinds[i]] += 1 2025-09-08T23:03:58,820 ^ 2025-09-08T23:03:58,820 ------------------------------------------------------------ 2025-09-08T23:03:58,820 sella/internal/int_classes.pyx:529:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,820 Error compiling Cython file: 2025-09-08T23:03:58,821 ------------------------------------------------------------ 2025-09-08T23:03:58,821 ... 2025-09-08T23:03:58,821 if self.dinds[i] != -1: 2025-09-08T23:03:58,821 nbonds[i] += 1 2025-09-08T23:03:58,821 nbonds[self.dinds[i]] += 1 2025-09-08T23:03:58,821 n = 0 2025-09-08T23:03:58,821 for i in range(self.ncart): 2025-09-08T23:03:58,821 ^ 2025-09-08T23:03:58,821 ------------------------------------------------------------ 2025-09-08T23:03:58,821 sella/internal/int_classes.pyx:532:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,822 Error compiling Cython file: 2025-09-08T23:03:58,822 ------------------------------------------------------------ 2025-09-08T23:03:58,822 ... 2025-09-08T23:03:58,822 if self.dinds[i] != -1: 2025-09-08T23:03:58,822 nbonds[i] += 1 2025-09-08T23:03:58,822 nbonds[self.dinds[i]] += 1 2025-09-08T23:03:58,822 n = 0 2025-09-08T23:03:58,822 for i in range(self.ncart): 2025-09-08T23:03:58,822 ^ 2025-09-08T23:03:58,822 ------------------------------------------------------------ 2025-09-08T23:03:58,823 sella/internal/int_classes.pyx:532:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,823 Error compiling Cython file: 2025-09-08T23:03:58,823 ------------------------------------------------------------ 2025-09-08T23:03:58,823 ... 2025-09-08T23:03:58,823 for i in range(self.ncart): 2025-09-08T23:03:58,823 h0[n] = h0cart 2025-09-08T23:03:58,823 n += 1 2025-09-08T23:03:58,823 conv = Hartree / Bohr**2 2025-09-08T23:03:58,823 for i in range(self.nbonds): 2025-09-08T23:03:58,823 ^ 2025-09-08T23:03:58,824 ------------------------------------------------------------ 2025-09-08T23:03:58,824 sella/internal/int_classes.pyx:537:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,824 Error compiling Cython file: 2025-09-08T23:03:58,824 ------------------------------------------------------------ 2025-09-08T23:03:58,824 ... 2025-09-08T23:03:58,824 for i in range(self.ncart): 2025-09-08T23:03:58,824 h0[n] = h0cart 2025-09-08T23:03:58,824 n += 1 2025-09-08T23:03:58,825 conv = Hartree / Bohr**2 2025-09-08T23:03:58,825 for i in range(self.nbonds): 2025-09-08T23:03:58,825 ^ 2025-09-08T23:03:58,825 ------------------------------------------------------------ 2025-09-08T23:03:58,825 sella/internal/int_classes.pyx:537:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,825 Error compiling Cython file: 2025-09-08T23:03:58,825 ------------------------------------------------------------ 2025-09-08T23:03:58,825 ... 2025-09-08T23:03:58,825 h0[n] = h0cart 2025-09-08T23:03:58,825 n += 1 2025-09-08T23:03:58,826 conv = Hartree / Bohr**2 2025-09-08T23:03:58,826 for i in range(self.nbonds): 2025-09-08T23:03:58,826 a = self.bonds[i, 0] 2025-09-08T23:03:58,826 ^ 2025-09-08T23:03:58,826 ------------------------------------------------------------ 2025-09-08T23:03:58,826 sella/internal/int_classes.pyx:538:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,826 Error compiling Cython file: 2025-09-08T23:03:58,826 ------------------------------------------------------------ 2025-09-08T23:03:58,826 ... 2025-09-08T23:03:58,827 h0[n] = h0cart 2025-09-08T23:03:58,827 n += 1 2025-09-08T23:03:58,827 conv = Hartree / Bohr**2 2025-09-08T23:03:58,827 for i in range(self.nbonds): 2025-09-08T23:03:58,827 a = self.bonds[i, 0] 2025-09-08T23:03:58,827 ^ 2025-09-08T23:03:58,827 ------------------------------------------------------------ 2025-09-08T23:03:58,827 sella/internal/int_classes.pyx:538:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,827 Error compiling Cython file: 2025-09-08T23:03:58,828 ------------------------------------------------------------ 2025-09-08T23:03:58,828 ... 2025-09-08T23:03:58,828 h0[n] = h0cart 2025-09-08T23:03:58,828 n += 1 2025-09-08T23:03:58,828 conv = Hartree / Bohr**2 2025-09-08T23:03:58,828 for i in range(self.nbonds): 2025-09-08T23:03:58,828 a = self.bonds[i, 0] 2025-09-08T23:03:58,828 ^ 2025-09-08T23:03:58,828 ------------------------------------------------------------ 2025-09-08T23:03:58,828 sella/internal/int_classes.pyx:538:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,829 Error compiling Cython file: 2025-09-08T23:03:58,829 ------------------------------------------------------------ 2025-09-08T23:03:58,829 ... 2025-09-08T23:03:58,829 h0[n] = h0cart 2025-09-08T23:03:58,829 n += 1 2025-09-08T23:03:58,829 conv = Hartree / Bohr**2 2025-09-08T23:03:58,829 for i in range(self.nbonds): 2025-09-08T23:03:58,829 a = self.bonds[i, 0] 2025-09-08T23:03:58,829 ^ 2025-09-08T23:03:58,829 ------------------------------------------------------------ 2025-09-08T23:03:58,830 sella/internal/int_classes.pyx:538:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,830 Error compiling Cython file: 2025-09-08T23:03:58,830 ------------------------------------------------------------ 2025-09-08T23:03:58,830 ... 2025-09-08T23:03:58,830 h0[n] = h0cart 2025-09-08T23:03:58,830 n += 1 2025-09-08T23:03:58,830 conv = Hartree / Bohr**2 2025-09-08T23:03:58,830 for i in range(self.nbonds): 2025-09-08T23:03:58,830 a = self.bonds[i, 0] 2025-09-08T23:03:58,830 ^ 2025-09-08T23:03:58,831 ------------------------------------------------------------ 2025-09-08T23:03:58,831 sella/internal/int_classes.pyx:538:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,831 Error compiling Cython file: 2025-09-08T23:03:58,831 ------------------------------------------------------------ 2025-09-08T23:03:58,831 ... 2025-09-08T23:03:58,831 n += 1 2025-09-08T23:03:58,831 conv = Hartree / Bohr**2 2025-09-08T23:03:58,831 for i in range(self.nbonds): 2025-09-08T23:03:58,831 a = self.bonds[i, 0] 2025-09-08T23:03:58,832 b = self.bonds[i, 1] 2025-09-08T23:03:58,832 ^ 2025-09-08T23:03:58,832 ------------------------------------------------------------ 2025-09-08T23:03:58,832 sella/internal/int_classes.pyx:539:30: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,832 Error compiling Cython file: 2025-09-08T23:03:58,832 ------------------------------------------------------------ 2025-09-08T23:03:58,832 ... 2025-09-08T23:03:58,832 n += 1 2025-09-08T23:03:58,832 conv = Hartree / Bohr**2 2025-09-08T23:03:58,833 for i in range(self.nbonds): 2025-09-08T23:03:58,833 a = self.bonds[i, 0] 2025-09-08T23:03:58,833 b = self.bonds[i, 1] 2025-09-08T23:03:58,833 ^ 2025-09-08T23:03:58,833 ------------------------------------------------------------ 2025-09-08T23:03:58,833 sella/internal/int_classes.pyx:539:30: Indexing Python object not allowed without gil 2025-09-08T23:03:58,833 Error compiling Cython file: 2025-09-08T23:03:58,833 ------------------------------------------------------------ 2025-09-08T23:03:58,833 ... 2025-09-08T23:03:58,833 n += 1 2025-09-08T23:03:58,834 conv = Hartree / Bohr**2 2025-09-08T23:03:58,834 for i in range(self.nbonds): 2025-09-08T23:03:58,834 a = self.bonds[i, 0] 2025-09-08T23:03:58,834 b = self.bonds[i, 1] 2025-09-08T23:03:58,834 ^ 2025-09-08T23:03:58,834 ------------------------------------------------------------ 2025-09-08T23:03:58,834 sella/internal/int_classes.pyx:539:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,834 Error compiling Cython file: 2025-09-08T23:03:58,834 ------------------------------------------------------------ 2025-09-08T23:03:58,834 ... 2025-09-08T23:03:58,835 n += 1 2025-09-08T23:03:58,835 conv = Hartree / Bohr**2 2025-09-08T23:03:58,835 for i in range(self.nbonds): 2025-09-08T23:03:58,835 a = self.bonds[i, 0] 2025-09-08T23:03:58,835 b = self.bonds[i, 1] 2025-09-08T23:03:58,835 ^ 2025-09-08T23:03:58,835 ------------------------------------------------------------ 2025-09-08T23:03:58,835 sella/internal/int_classes.pyx:539:30: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,835 Error compiling Cython file: 2025-09-08T23:03:58,836 ------------------------------------------------------------ 2025-09-08T23:03:58,836 ... 2025-09-08T23:03:58,836 n += 1 2025-09-08T23:03:58,836 conv = Hartree / Bohr**2 2025-09-08T23:03:58,836 for i in range(self.nbonds): 2025-09-08T23:03:58,836 a = self.bonds[i, 0] 2025-09-08T23:03:58,836 b = self.bonds[i, 1] 2025-09-08T23:03:58,836 ^ 2025-09-08T23:03:58,836 ------------------------------------------------------------ 2025-09-08T23:03:58,836 sella/internal/int_classes.pyx:539:31: Converting to Python object not allowed without gil 2025-09-08T23:03:58,837 Error compiling Cython file: 2025-09-08T23:03:58,837 ------------------------------------------------------------ 2025-09-08T23:03:58,837 ... 2025-09-08T23:03:58,837 #h0[n] = self._h0_bond(self.bonds[i, 0], self.bonds[i, 1], 2025-09-08T23:03:58,837 # rij, rcov, conv) 2025-09-08T23:03:58,837 n += 1 2025-09-08T23:03:58,837 conv = Hartree 2025-09-08T23:03:58,837 for i in range(self.nangles): 2025-09-08T23:03:58,837 ^ 2025-09-08T23:03:58,837 ------------------------------------------------------------ 2025-09-08T23:03:58,838 sella/internal/int_classes.pyx:546:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,838 Error compiling Cython file: 2025-09-08T23:03:58,838 ------------------------------------------------------------ 2025-09-08T23:03:58,838 ... 2025-09-08T23:03:58,838 #h0[n] = self._h0_bond(self.bonds[i, 0], self.bonds[i, 1], 2025-09-08T23:03:58,838 # rij, rcov, conv) 2025-09-08T23:03:58,838 n += 1 2025-09-08T23:03:58,838 conv = Hartree 2025-09-08T23:03:58,838 for i in range(self.nangles): 2025-09-08T23:03:58,838 ^ 2025-09-08T23:03:58,839 ------------------------------------------------------------ 2025-09-08T23:03:58,839 sella/internal/int_classes.pyx:546:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,839 Error compiling Cython file: 2025-09-08T23:03:58,839 ------------------------------------------------------------ 2025-09-08T23:03:58,839 ... 2025-09-08T23:03:58,839 # rij, rcov, conv) 2025-09-08T23:03:58,839 n += 1 2025-09-08T23:03:58,839 conv = Hartree 2025-09-08T23:03:58,839 for i in range(self.nangles): 2025-09-08T23:03:58,840 a = self.angles[i, 0] 2025-09-08T23:03:58,840 ^ 2025-09-08T23:03:58,840 ------------------------------------------------------------ 2025-09-08T23:03:58,840 sella/internal/int_classes.pyx:547:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,840 Error compiling Cython file: 2025-09-08T23:03:58,840 ------------------------------------------------------------ 2025-09-08T23:03:58,840 ... 2025-09-08T23:03:58,840 # rij, rcov, conv) 2025-09-08T23:03:58,840 n += 1 2025-09-08T23:03:58,840 conv = Hartree 2025-09-08T23:03:58,841 for i in range(self.nangles): 2025-09-08T23:03:58,841 a = self.angles[i, 0] 2025-09-08T23:03:58,841 ^ 2025-09-08T23:03:58,841 ------------------------------------------------------------ 2025-09-08T23:03:58,841 sella/internal/int_classes.pyx:547:31: Indexing Python object not allowed without gil 2025-09-08T23:03:58,841 Error compiling Cython file: 2025-09-08T23:03:58,841 ------------------------------------------------------------ 2025-09-08T23:03:58,841 ... 2025-09-08T23:03:58,841 # rij, rcov, conv) 2025-09-08T23:03:58,841 n += 1 2025-09-08T23:03:58,842 conv = Hartree 2025-09-08T23:03:58,842 for i in range(self.nangles): 2025-09-08T23:03:58,842 a = self.angles[i, 0] 2025-09-08T23:03:58,842 ^ 2025-09-08T23:03:58,842 ------------------------------------------------------------ 2025-09-08T23:03:58,842 sella/internal/int_classes.pyx:547:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,842 Error compiling Cython file: 2025-09-08T23:03:58,842 ------------------------------------------------------------ 2025-09-08T23:03:58,842 ... 2025-09-08T23:03:58,843 # rij, rcov, conv) 2025-09-08T23:03:58,843 n += 1 2025-09-08T23:03:58,843 conv = Hartree 2025-09-08T23:03:58,843 for i in range(self.nangles): 2025-09-08T23:03:58,843 a = self.angles[i, 0] 2025-09-08T23:03:58,843 ^ 2025-09-08T23:03:58,843 ------------------------------------------------------------ 2025-09-08T23:03:58,843 sella/internal/int_classes.pyx:547:31: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,843 Error compiling Cython file: 2025-09-08T23:03:58,844 ------------------------------------------------------------ 2025-09-08T23:03:58,844 ... 2025-09-08T23:03:58,844 # rij, rcov, conv) 2025-09-08T23:03:58,844 n += 1 2025-09-08T23:03:58,844 conv = Hartree 2025-09-08T23:03:58,844 for i in range(self.nangles): 2025-09-08T23:03:58,844 a = self.angles[i, 0] 2025-09-08T23:03:58,844 ^ 2025-09-08T23:03:58,844 ------------------------------------------------------------ 2025-09-08T23:03:58,844 sella/internal/int_classes.pyx:547:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,845 Error compiling Cython file: 2025-09-08T23:03:58,845 ------------------------------------------------------------ 2025-09-08T23:03:58,845 ... 2025-09-08T23:03:58,845 n += 1 2025-09-08T23:03:58,845 conv = Hartree 2025-09-08T23:03:58,845 for i in range(self.nangles): 2025-09-08T23:03:58,845 a = self.angles[i, 0] 2025-09-08T23:03:58,845 b = self.angles[i, 1] 2025-09-08T23:03:58,845 ^ 2025-09-08T23:03:58,846 ------------------------------------------------------------ 2025-09-08T23:03:58,846 sella/internal/int_classes.pyx:548:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,846 Error compiling Cython file: 2025-09-08T23:03:58,846 ------------------------------------------------------------ 2025-09-08T23:03:58,846 ... 2025-09-08T23:03:58,846 n += 1 2025-09-08T23:03:58,846 conv = Hartree 2025-09-08T23:03:58,846 for i in range(self.nangles): 2025-09-08T23:03:58,846 a = self.angles[i, 0] 2025-09-08T23:03:58,847 b = self.angles[i, 1] 2025-09-08T23:03:58,847 ^ 2025-09-08T23:03:58,847 ------------------------------------------------------------ 2025-09-08T23:03:58,847 sella/internal/int_classes.pyx:548:31: Indexing Python object not allowed without gil 2025-09-08T23:03:58,847 Error compiling Cython file: 2025-09-08T23:03:58,847 ------------------------------------------------------------ 2025-09-08T23:03:58,847 ... 2025-09-08T23:03:58,847 n += 1 2025-09-08T23:03:58,847 conv = Hartree 2025-09-08T23:03:58,848 for i in range(self.nangles): 2025-09-08T23:03:58,848 a = self.angles[i, 0] 2025-09-08T23:03:58,848 b = self.angles[i, 1] 2025-09-08T23:03:58,848 ^ 2025-09-08T23:03:58,848 ------------------------------------------------------------ 2025-09-08T23:03:58,848 sella/internal/int_classes.pyx:548:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,848 Error compiling Cython file: 2025-09-08T23:03:58,848 ------------------------------------------------------------ 2025-09-08T23:03:58,848 ... 2025-09-08T23:03:58,848 n += 1 2025-09-08T23:03:58,849 conv = Hartree 2025-09-08T23:03:58,849 for i in range(self.nangles): 2025-09-08T23:03:58,849 a = self.angles[i, 0] 2025-09-08T23:03:58,849 b = self.angles[i, 1] 2025-09-08T23:03:58,849 ^ 2025-09-08T23:03:58,849 ------------------------------------------------------------ 2025-09-08T23:03:58,849 sella/internal/int_classes.pyx:548:31: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,849 Error compiling Cython file: 2025-09-08T23:03:58,849 ------------------------------------------------------------ 2025-09-08T23:03:58,849 ... 2025-09-08T23:03:58,850 n += 1 2025-09-08T23:03:58,850 conv = Hartree 2025-09-08T23:03:58,850 for i in range(self.nangles): 2025-09-08T23:03:58,850 a = self.angles[i, 0] 2025-09-08T23:03:58,850 b = self.angles[i, 1] 2025-09-08T23:03:58,850 ^ 2025-09-08T23:03:58,850 ------------------------------------------------------------ 2025-09-08T23:03:58,850 sella/internal/int_classes.pyx:548:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,850 Error compiling Cython file: 2025-09-08T23:03:58,850 ------------------------------------------------------------ 2025-09-08T23:03:58,851 ... 2025-09-08T23:03:58,851 conv = Hartree 2025-09-08T23:03:58,851 for i in range(self.nangles): 2025-09-08T23:03:58,851 a = self.angles[i, 0] 2025-09-08T23:03:58,851 b = self.angles[i, 1] 2025-09-08T23:03:58,851 c = self.angles[i, 2] 2025-09-08T23:03:58,851 ^ 2025-09-08T23:03:58,851 ------------------------------------------------------------ 2025-09-08T23:03:58,851 sella/internal/int_classes.pyx:549:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,852 Error compiling Cython file: 2025-09-08T23:03:58,852 ------------------------------------------------------------ 2025-09-08T23:03:58,852 ... 2025-09-08T23:03:58,852 conv = Hartree 2025-09-08T23:03:58,852 for i in range(self.nangles): 2025-09-08T23:03:58,852 a = self.angles[i, 0] 2025-09-08T23:03:58,852 b = self.angles[i, 1] 2025-09-08T23:03:58,852 c = self.angles[i, 2] 2025-09-08T23:03:58,852 ^ 2025-09-08T23:03:58,852 ------------------------------------------------------------ 2025-09-08T23:03:58,853 sella/internal/int_classes.pyx:549:31: Indexing Python object not allowed without gil 2025-09-08T23:03:58,853 Error compiling Cython file: 2025-09-08T23:03:58,853 ------------------------------------------------------------ 2025-09-08T23:03:58,853 ... 2025-09-08T23:03:58,853 conv = Hartree 2025-09-08T23:03:58,853 for i in range(self.nangles): 2025-09-08T23:03:58,853 a = self.angles[i, 0] 2025-09-08T23:03:58,853 b = self.angles[i, 1] 2025-09-08T23:03:58,853 c = self.angles[i, 2] 2025-09-08T23:03:58,853 ^ 2025-09-08T23:03:58,854 ------------------------------------------------------------ 2025-09-08T23:03:58,854 sella/internal/int_classes.pyx:549:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,854 Error compiling Cython file: 2025-09-08T23:03:58,854 ------------------------------------------------------------ 2025-09-08T23:03:58,854 ... 2025-09-08T23:03:58,854 conv = Hartree 2025-09-08T23:03:58,854 for i in range(self.nangles): 2025-09-08T23:03:58,854 a = self.angles[i, 0] 2025-09-08T23:03:58,854 b = self.angles[i, 1] 2025-09-08T23:03:58,854 c = self.angles[i, 2] 2025-09-08T23:03:58,855 ^ 2025-09-08T23:03:58,855 ------------------------------------------------------------ 2025-09-08T23:03:58,855 sella/internal/int_classes.pyx:549:31: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,855 Error compiling Cython file: 2025-09-08T23:03:58,855 ------------------------------------------------------------ 2025-09-08T23:03:58,855 ... 2025-09-08T23:03:58,855 conv = Hartree 2025-09-08T23:03:58,855 for i in range(self.nangles): 2025-09-08T23:03:58,855 a = self.angles[i, 0] 2025-09-08T23:03:58,856 b = self.angles[i, 1] 2025-09-08T23:03:58,856 c = self.angles[i, 2] 2025-09-08T23:03:58,856 ^ 2025-09-08T23:03:58,856 ------------------------------------------------------------ 2025-09-08T23:03:58,856 sella/internal/int_classes.pyx:549:32: Converting to Python object not allowed without gil 2025-09-08T23:03:58,856 Error compiling Cython file: 2025-09-08T23:03:58,856 ------------------------------------------------------------ 2025-09-08T23:03:58,856 ... 2025-09-08T23:03:58,856 rcov[b] + rcov[c], conv) 2025-09-08T23:03:58,856 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,857 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,857 n += 1 2025-09-08T23:03:58,857 for i in range(self.ndihedrals): 2025-09-08T23:03:58,857 ^ 2025-09-08T23:03:58,857 ------------------------------------------------------------ 2025-09-08T23:03:58,857 sella/internal/int_classes.pyx:556:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,857 Error compiling Cython file: 2025-09-08T23:03:58,857 ------------------------------------------------------------ 2025-09-08T23:03:58,857 ... 2025-09-08T23:03:58,857 rcov[b] + rcov[c], conv) 2025-09-08T23:03:58,858 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,858 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,858 n += 1 2025-09-08T23:03:58,858 for i in range(self.ndihedrals): 2025-09-08T23:03:58,858 ^ 2025-09-08T23:03:58,858 ------------------------------------------------------------ 2025-09-08T23:03:58,858 sella/internal/int_classes.pyx:556:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,858 Error compiling Cython file: 2025-09-08T23:03:58,858 ------------------------------------------------------------ 2025-09-08T23:03:58,859 ... 2025-09-08T23:03:58,859 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,859 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,859 n += 1 2025-09-08T23:03:58,859 for i in range(self.ndihedrals): 2025-09-08T23:03:58,859 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,859 ^ 2025-09-08T23:03:58,859 ------------------------------------------------------------ 2025-09-08T23:03:58,859 sella/internal/int_classes.pyx:557:34: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,860 Error compiling Cython file: 2025-09-08T23:03:58,860 ------------------------------------------------------------ 2025-09-08T23:03:58,860 ... 2025-09-08T23:03:58,860 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,860 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,860 n += 1 2025-09-08T23:03:58,860 for i in range(self.ndihedrals): 2025-09-08T23:03:58,860 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,860 ^ 2025-09-08T23:03:58,860 ------------------------------------------------------------ 2025-09-08T23:03:58,861 sella/internal/int_classes.pyx:557:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,861 Error compiling Cython file: 2025-09-08T23:03:58,861 ------------------------------------------------------------ 2025-09-08T23:03:58,861 ... 2025-09-08T23:03:58,861 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,861 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,861 n += 1 2025-09-08T23:03:58,861 for i in range(self.ndihedrals): 2025-09-08T23:03:58,861 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,861 ^ 2025-09-08T23:03:58,861 ------------------------------------------------------------ 2025-09-08T23:03:58,862 sella/internal/int_classes.pyx:557:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,862 Error compiling Cython file: 2025-09-08T23:03:58,862 ------------------------------------------------------------ 2025-09-08T23:03:58,862 ... 2025-09-08T23:03:58,862 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,862 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,862 n += 1 2025-09-08T23:03:58,862 for i in range(self.ndihedrals): 2025-09-08T23:03:58,862 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,863 ^ 2025-09-08T23:03:58,863 ------------------------------------------------------------ 2025-09-08T23:03:58,863 sella/internal/int_classes.pyx:557:34: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,863 Error compiling Cython file: 2025-09-08T23:03:58,863 ------------------------------------------------------------ 2025-09-08T23:03:58,863 ... 2025-09-08T23:03:58,863 #h0[n] = self._h0_angle(self.angles[i, 0], self.angles[i, 1], 2025-09-08T23:03:58,863 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,863 n += 1 2025-09-08T23:03:58,864 for i in range(self.ndihedrals): 2025-09-08T23:03:58,864 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,864 ^ 2025-09-08T23:03:58,864 ------------------------------------------------------------ 2025-09-08T23:03:58,864 sella/internal/int_classes.pyx:557:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,864 Error compiling Cython file: 2025-09-08T23:03:58,864 ------------------------------------------------------------ 2025-09-08T23:03:58,864 ... 2025-09-08T23:03:58,864 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,865 n += 1 2025-09-08T23:03:58,865 for i in range(self.ndihedrals): 2025-09-08T23:03:58,865 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,865 c = self.dihedrals[i, 2] 2025-09-08T23:03:58,865 ^ 2025-09-08T23:03:58,865 ------------------------------------------------------------ 2025-09-08T23:03:58,865 sella/internal/int_classes.pyx:558:34: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,865 Error compiling Cython file: 2025-09-08T23:03:58,865 ------------------------------------------------------------ 2025-09-08T23:03:58,866 ... 2025-09-08T23:03:58,866 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,866 n += 1 2025-09-08T23:03:58,866 for i in range(self.ndihedrals): 2025-09-08T23:03:58,866 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,866 c = self.dihedrals[i, 2] 2025-09-08T23:03:58,866 ^ 2025-09-08T23:03:58,866 ------------------------------------------------------------ 2025-09-08T23:03:58,866 sella/internal/int_classes.pyx:558:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,867 Error compiling Cython file: 2025-09-08T23:03:58,867 ------------------------------------------------------------ 2025-09-08T23:03:58,867 ... 2025-09-08T23:03:58,867 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,867 n += 1 2025-09-08T23:03:58,867 for i in range(self.ndihedrals): 2025-09-08T23:03:58,867 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,867 c = self.dihedrals[i, 2] 2025-09-08T23:03:58,867 ^ 2025-09-08T23:03:58,867 ------------------------------------------------------------ 2025-09-08T23:03:58,868 sella/internal/int_classes.pyx:558:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,868 Error compiling Cython file: 2025-09-08T23:03:58,868 ------------------------------------------------------------ 2025-09-08T23:03:58,868 ... 2025-09-08T23:03:58,868 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,868 n += 1 2025-09-08T23:03:58,868 for i in range(self.ndihedrals): 2025-09-08T23:03:58,868 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,868 c = self.dihedrals[i, 2] 2025-09-08T23:03:58,868 ^ 2025-09-08T23:03:58,869 ------------------------------------------------------------ 2025-09-08T23:03:58,869 sella/internal/int_classes.pyx:558:34: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,869 Error compiling Cython file: 2025-09-08T23:03:58,869 ------------------------------------------------------------ 2025-09-08T23:03:58,869 ... 2025-09-08T23:03:58,869 # self.angles[i, 2], rij, rcov, conv) 2025-09-08T23:03:58,869 n += 1 2025-09-08T23:03:58,869 for i in range(self.ndihedrals): 2025-09-08T23:03:58,869 b = self.dihedrals[i, 1] 2025-09-08T23:03:58,870 c = self.dihedrals[i, 2] 2025-09-08T23:03:58,870 ^ 2025-09-08T23:03:58,870 ------------------------------------------------------------ 2025-09-08T23:03:58,870 sella/internal/int_classes.pyx:558:35: Converting to Python object not allowed without gil 2025-09-08T23:03:58,870 Error compiling Cython file: 2025-09-08T23:03:58,870 ------------------------------------------------------------ 2025-09-08T23:03:58,870 ... 2025-09-08T23:03:58,870 # self.dihedrals[i, 2], 2025-09-08T23:03:58,870 # self.dihedrals[i, 3], 2025-09-08T23:03:58,870 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,871 n += 1 2025-09-08T23:03:58,871 for i in range(self.nangle_sums): 2025-09-08T23:03:58,871 ^ 2025-09-08T23:03:58,871 ------------------------------------------------------------ 2025-09-08T23:03:58,871 sella/internal/int_classes.pyx:568:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,871 Error compiling Cython file: 2025-09-08T23:03:58,871 ------------------------------------------------------------ 2025-09-08T23:03:58,871 ... 2025-09-08T23:03:58,871 # self.dihedrals[i, 2], 2025-09-08T23:03:58,871 # self.dihedrals[i, 3], 2025-09-08T23:03:58,872 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,872 n += 1 2025-09-08T23:03:58,872 for i in range(self.nangle_sums): 2025-09-08T23:03:58,872 ^ 2025-09-08T23:03:58,872 ------------------------------------------------------------ 2025-09-08T23:03:58,872 sella/internal/int_classes.pyx:568:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,872 Error compiling Cython file: 2025-09-08T23:03:58,872 ------------------------------------------------------------ 2025-09-08T23:03:58,872 ... 2025-09-08T23:03:58,873 # self.dihedrals[i, 3], 2025-09-08T23:03:58,873 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,873 n += 1 2025-09-08T23:03:58,873 for i in range(self.nangle_sums): 2025-09-08T23:03:58,873 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,873 ^ 2025-09-08T23:03:58,873 ------------------------------------------------------------ 2025-09-08T23:03:58,873 sella/internal/int_classes.pyx:569:35: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,873 Error compiling Cython file: 2025-09-08T23:03:58,874 ------------------------------------------------------------ 2025-09-08T23:03:58,874 ... 2025-09-08T23:03:58,874 # self.dihedrals[i, 3], 2025-09-08T23:03:58,874 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,874 n += 1 2025-09-08T23:03:58,874 for i in range(self.nangle_sums): 2025-09-08T23:03:58,874 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,874 ^ 2025-09-08T23:03:58,874 ------------------------------------------------------------ 2025-09-08T23:03:58,874 sella/internal/int_classes.pyx:569:35: Indexing Python object not allowed without gil 2025-09-08T23:03:58,875 Error compiling Cython file: 2025-09-08T23:03:58,875 ------------------------------------------------------------ 2025-09-08T23:03:58,875 ... 2025-09-08T23:03:58,875 # self.dihedrals[i, 3], 2025-09-08T23:03:58,875 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,875 n += 1 2025-09-08T23:03:58,875 for i in range(self.nangle_sums): 2025-09-08T23:03:58,875 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,875 ^ 2025-09-08T23:03:58,875 ------------------------------------------------------------ 2025-09-08T23:03:58,876 sella/internal/int_classes.pyx:569:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,876 Error compiling Cython file: 2025-09-08T23:03:58,876 ------------------------------------------------------------ 2025-09-08T23:03:58,876 ... 2025-09-08T23:03:58,876 # self.dihedrals[i, 3], 2025-09-08T23:03:58,876 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,876 n += 1 2025-09-08T23:03:58,876 for i in range(self.nangle_sums): 2025-09-08T23:03:58,876 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,876 ^ 2025-09-08T23:03:58,877 ------------------------------------------------------------ 2025-09-08T23:03:58,877 sella/internal/int_classes.pyx:569:35: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,877 Error compiling Cython file: 2025-09-08T23:03:58,877 ------------------------------------------------------------ 2025-09-08T23:03:58,877 ... 2025-09-08T23:03:58,877 # self.dihedrals[i, 3], 2025-09-08T23:03:58,877 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,877 n += 1 2025-09-08T23:03:58,877 for i in range(self.nangle_sums): 2025-09-08T23:03:58,877 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,878 ^ 2025-09-08T23:03:58,878 ------------------------------------------------------------ 2025-09-08T23:03:58,878 sella/internal/int_classes.pyx:569:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,878 Error compiling Cython file: 2025-09-08T23:03:58,878 ------------------------------------------------------------ 2025-09-08T23:03:58,878 ... 2025-09-08T23:03:58,878 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,878 n += 1 2025-09-08T23:03:58,878 for i in range(self.nangle_sums): 2025-09-08T23:03:58,879 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,879 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,879 ^ 2025-09-08T23:03:58,879 ------------------------------------------------------------ 2025-09-08T23:03:58,879 sella/internal/int_classes.pyx:570:35: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,879 Error compiling Cython file: 2025-09-08T23:03:58,879 ------------------------------------------------------------ 2025-09-08T23:03:58,879 ... 2025-09-08T23:03:58,879 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,879 n += 1 2025-09-08T23:03:58,880 for i in range(self.nangle_sums): 2025-09-08T23:03:58,880 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,880 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,880 ^ 2025-09-08T23:03:58,880 ------------------------------------------------------------ 2025-09-08T23:03:58,880 sella/internal/int_classes.pyx:570:35: Indexing Python object not allowed without gil 2025-09-08T23:03:58,880 Error compiling Cython file: 2025-09-08T23:03:58,880 ------------------------------------------------------------ 2025-09-08T23:03:58,880 ... 2025-09-08T23:03:58,880 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,881 n += 1 2025-09-08T23:03:58,881 for i in range(self.nangle_sums): 2025-09-08T23:03:58,881 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,881 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,881 ^ 2025-09-08T23:03:58,881 ------------------------------------------------------------ 2025-09-08T23:03:58,881 sella/internal/int_classes.pyx:570:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,881 Error compiling Cython file: 2025-09-08T23:03:58,881 ------------------------------------------------------------ 2025-09-08T23:03:58,882 ... 2025-09-08T23:03:58,882 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,882 n += 1 2025-09-08T23:03:58,882 for i in range(self.nangle_sums): 2025-09-08T23:03:58,882 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,882 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,882 ^ 2025-09-08T23:03:58,882 ------------------------------------------------------------ 2025-09-08T23:03:58,882 sella/internal/int_classes.pyx:570:35: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,883 Error compiling Cython file: 2025-09-08T23:03:58,883 ------------------------------------------------------------ 2025-09-08T23:03:58,883 ... 2025-09-08T23:03:58,883 # nbonds, rij, rcov, conv) 2025-09-08T23:03:58,883 n += 1 2025-09-08T23:03:58,883 for i in range(self.nangle_sums): 2025-09-08T23:03:58,883 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,883 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,883 ^ 2025-09-08T23:03:58,883 ------------------------------------------------------------ 2025-09-08T23:03:58,884 sella/internal/int_classes.pyx:570:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,884 Error compiling Cython file: 2025-09-08T23:03:58,884 ------------------------------------------------------------ 2025-09-08T23:03:58,884 ... 2025-09-08T23:03:58,884 n += 1 2025-09-08T23:03:58,884 for i in range(self.nangle_sums): 2025-09-08T23:03:58,884 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,884 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,884 c = self.angle_sums[i, 2] 2025-09-08T23:03:58,885 ^ 2025-09-08T23:03:58,885 ------------------------------------------------------------ 2025-09-08T23:03:58,885 sella/internal/int_classes.pyx:571:35: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,885 Error compiling Cython file: 2025-09-08T23:03:58,885 ------------------------------------------------------------ 2025-09-08T23:03:58,885 ... 2025-09-08T23:03:58,885 n += 1 2025-09-08T23:03:58,885 for i in range(self.nangle_sums): 2025-09-08T23:03:58,885 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,886 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,886 c = self.angle_sums[i, 2] 2025-09-08T23:03:58,886 ^ 2025-09-08T23:03:58,886 ------------------------------------------------------------ 2025-09-08T23:03:58,886 sella/internal/int_classes.pyx:571:35: Indexing Python object not allowed without gil 2025-09-08T23:03:58,886 Error compiling Cython file: 2025-09-08T23:03:58,886 ------------------------------------------------------------ 2025-09-08T23:03:58,886 ... 2025-09-08T23:03:58,886 n += 1 2025-09-08T23:03:58,886 for i in range(self.nangle_sums): 2025-09-08T23:03:58,887 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,887 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,887 c = self.angle_sums[i, 2] 2025-09-08T23:03:58,887 ^ 2025-09-08T23:03:58,887 ------------------------------------------------------------ 2025-09-08T23:03:58,887 sella/internal/int_classes.pyx:571:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,887 Error compiling Cython file: 2025-09-08T23:03:58,887 ------------------------------------------------------------ 2025-09-08T23:03:58,887 ... 2025-09-08T23:03:58,887 n += 1 2025-09-08T23:03:58,888 for i in range(self.nangle_sums): 2025-09-08T23:03:58,888 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,888 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,888 c = self.angle_sums[i, 2] 2025-09-08T23:03:58,888 ^ 2025-09-08T23:03:58,888 ------------------------------------------------------------ 2025-09-08T23:03:58,888 sella/internal/int_classes.pyx:571:35: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,888 Error compiling Cython file: 2025-09-08T23:03:58,888 ------------------------------------------------------------ 2025-09-08T23:03:58,889 ... 2025-09-08T23:03:58,889 n += 1 2025-09-08T23:03:58,889 for i in range(self.nangle_sums): 2025-09-08T23:03:58,889 a = self.angle_sums[i, 0] 2025-09-08T23:03:58,889 b = self.angle_sums[i, 1] 2025-09-08T23:03:58,889 c = self.angle_sums[i, 2] 2025-09-08T23:03:58,889 ^ 2025-09-08T23:03:58,889 ------------------------------------------------------------ 2025-09-08T23:03:58,889 sella/internal/int_classes.pyx:571:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,890 Error compiling Cython file: 2025-09-08T23:03:58,890 ------------------------------------------------------------ 2025-09-08T23:03:58,890 ... 2025-09-08T23:03:58,890 # self.angle_sums[i, 1], 2025-09-08T23:03:58,890 # self.angle_sums[i, 3], 2025-09-08T23:03:58,890 # rij, rcov, conv) 2025-09-08T23:03:58,890 n += 1 2025-09-08T23:03:58,890 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,890 ^ 2025-09-08T23:03:58,890 ------------------------------------------------------------ 2025-09-08T23:03:58,890 sella/internal/int_classes.pyx:584:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,891 Error compiling Cython file: 2025-09-08T23:03:58,891 ------------------------------------------------------------ 2025-09-08T23:03:58,891 ... 2025-09-08T23:03:58,891 # self.angle_sums[i, 1], 2025-09-08T23:03:58,891 # self.angle_sums[i, 3], 2025-09-08T23:03:58,891 # rij, rcov, conv) 2025-09-08T23:03:58,891 n += 1 2025-09-08T23:03:58,891 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,891 ^ 2025-09-08T23:03:58,891 ------------------------------------------------------------ 2025-09-08T23:03:58,892 sella/internal/int_classes.pyx:584:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,892 Error compiling Cython file: 2025-09-08T23:03:58,892 ------------------------------------------------------------ 2025-09-08T23:03:58,892 ... 2025-09-08T23:03:58,892 # self.angle_sums[i, 3], 2025-09-08T23:03:58,892 # rij, rcov, conv) 2025-09-08T23:03:58,892 n += 1 2025-09-08T23:03:58,892 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,892 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,893 ^ 2025-09-08T23:03:58,893 ------------------------------------------------------------ 2025-09-08T23:03:58,893 sella/internal/int_classes.pyx:585:36: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,893 Error compiling Cython file: 2025-09-08T23:03:58,893 ------------------------------------------------------------ 2025-09-08T23:03:58,893 ... 2025-09-08T23:03:58,893 # self.angle_sums[i, 3], 2025-09-08T23:03:58,893 # rij, rcov, conv) 2025-09-08T23:03:58,893 n += 1 2025-09-08T23:03:58,894 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,894 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,894 ^ 2025-09-08T23:03:58,894 ------------------------------------------------------------ 2025-09-08T23:03:58,894 sella/internal/int_classes.pyx:585:36: Indexing Python object not allowed without gil 2025-09-08T23:03:58,894 Error compiling Cython file: 2025-09-08T23:03:58,894 ------------------------------------------------------------ 2025-09-08T23:03:58,894 ... 2025-09-08T23:03:58,894 # self.angle_sums[i, 3], 2025-09-08T23:03:58,894 # rij, rcov, conv) 2025-09-08T23:03:58,894 n += 1 2025-09-08T23:03:58,895 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,895 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,895 ^ 2025-09-08T23:03:58,895 ------------------------------------------------------------ 2025-09-08T23:03:58,895 sella/internal/int_classes.pyx:585:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,895 Error compiling Cython file: 2025-09-08T23:03:58,895 ------------------------------------------------------------ 2025-09-08T23:03:58,895 ... 2025-09-08T23:03:58,895 # self.angle_sums[i, 3], 2025-09-08T23:03:58,896 # rij, rcov, conv) 2025-09-08T23:03:58,896 n += 1 2025-09-08T23:03:58,896 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,896 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,896 ^ 2025-09-08T23:03:58,896 ------------------------------------------------------------ 2025-09-08T23:03:58,896 sella/internal/int_classes.pyx:585:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,896 Error compiling Cython file: 2025-09-08T23:03:58,896 ------------------------------------------------------------ 2025-09-08T23:03:58,897 ... 2025-09-08T23:03:58,897 # self.angle_sums[i, 3], 2025-09-08T23:03:58,897 # rij, rcov, conv) 2025-09-08T23:03:58,897 n += 1 2025-09-08T23:03:58,897 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,897 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,897 ^ 2025-09-08T23:03:58,897 ------------------------------------------------------------ 2025-09-08T23:03:58,897 sella/internal/int_classes.pyx:585:37: Converting to Python object not allowed without gil 2025-09-08T23:03:58,897 Error compiling Cython file: 2025-09-08T23:03:58,898 ------------------------------------------------------------ 2025-09-08T23:03:58,898 ... 2025-09-08T23:03:58,898 # rij, rcov, conv) 2025-09-08T23:03:58,898 n += 1 2025-09-08T23:03:58,898 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,898 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,898 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,898 ^ 2025-09-08T23:03:58,898 ------------------------------------------------------------ 2025-09-08T23:03:58,898 sella/internal/int_classes.pyx:586:36: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,899 Error compiling Cython file: 2025-09-08T23:03:58,899 ------------------------------------------------------------ 2025-09-08T23:03:58,899 ... 2025-09-08T23:03:58,899 # rij, rcov, conv) 2025-09-08T23:03:58,899 n += 1 2025-09-08T23:03:58,899 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,899 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,899 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,899 ^ 2025-09-08T23:03:58,899 ------------------------------------------------------------ 2025-09-08T23:03:58,900 sella/internal/int_classes.pyx:586:36: Indexing Python object not allowed without gil 2025-09-08T23:03:58,900 Error compiling Cython file: 2025-09-08T23:03:58,900 ------------------------------------------------------------ 2025-09-08T23:03:58,900 ... 2025-09-08T23:03:58,900 # rij, rcov, conv) 2025-09-08T23:03:58,900 n += 1 2025-09-08T23:03:58,900 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,900 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,900 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,901 ^ 2025-09-08T23:03:58,901 ------------------------------------------------------------ 2025-09-08T23:03:58,901 sella/internal/int_classes.pyx:586:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,901 Error compiling Cython file: 2025-09-08T23:03:58,901 ------------------------------------------------------------ 2025-09-08T23:03:58,901 ... 2025-09-08T23:03:58,901 # rij, rcov, conv) 2025-09-08T23:03:58,901 n += 1 2025-09-08T23:03:58,902 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,902 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,902 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,902 ^ 2025-09-08T23:03:58,902 ------------------------------------------------------------ 2025-09-08T23:03:58,902 sella/internal/int_classes.pyx:586:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,902 Error compiling Cython file: 2025-09-08T23:03:58,902 ------------------------------------------------------------ 2025-09-08T23:03:58,902 ... 2025-09-08T23:03:58,902 # rij, rcov, conv) 2025-09-08T23:03:58,903 n += 1 2025-09-08T23:03:58,903 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,903 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,903 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,903 ^ 2025-09-08T23:03:58,903 ------------------------------------------------------------ 2025-09-08T23:03:58,903 sella/internal/int_classes.pyx:586:37: Converting to Python object not allowed without gil 2025-09-08T23:03:58,903 Error compiling Cython file: 2025-09-08T23:03:58,903 ------------------------------------------------------------ 2025-09-08T23:03:58,903 ... 2025-09-08T23:03:58,904 n += 1 2025-09-08T23:03:58,904 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,904 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,904 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,904 c = self.angle_diffs[i, 2] 2025-09-08T23:03:58,904 ^ 2025-09-08T23:03:58,904 ------------------------------------------------------------ 2025-09-08T23:03:58,904 sella/internal/int_classes.pyx:587:36: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,904 Error compiling Cython file: 2025-09-08T23:03:58,905 ------------------------------------------------------------ 2025-09-08T23:03:58,905 ... 2025-09-08T23:03:58,905 n += 1 2025-09-08T23:03:58,905 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,905 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,905 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,905 c = self.angle_diffs[i, 2] 2025-09-08T23:03:58,905 ^ 2025-09-08T23:03:58,905 ------------------------------------------------------------ 2025-09-08T23:03:58,905 sella/internal/int_classes.pyx:587:36: Indexing Python object not allowed without gil 2025-09-08T23:03:58,906 Error compiling Cython file: 2025-09-08T23:03:58,906 ------------------------------------------------------------ 2025-09-08T23:03:58,906 ... 2025-09-08T23:03:58,906 n += 1 2025-09-08T23:03:58,906 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,906 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,906 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,906 c = self.angle_diffs[i, 2] 2025-09-08T23:03:58,906 ^ 2025-09-08T23:03:58,906 ------------------------------------------------------------ 2025-09-08T23:03:58,907 sella/internal/int_classes.pyx:587:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,907 Error compiling Cython file: 2025-09-08T23:03:58,907 ------------------------------------------------------------ 2025-09-08T23:03:58,907 ... 2025-09-08T23:03:58,907 n += 1 2025-09-08T23:03:58,907 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,907 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,907 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,907 c = self.angle_diffs[i, 2] 2025-09-08T23:03:58,907 ^ 2025-09-08T23:03:58,908 ------------------------------------------------------------ 2025-09-08T23:03:58,908 sella/internal/int_classes.pyx:587:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,908 Error compiling Cython file: 2025-09-08T23:03:58,908 ------------------------------------------------------------ 2025-09-08T23:03:58,908 ... 2025-09-08T23:03:58,908 n += 1 2025-09-08T23:03:58,908 for i in range(self.nangle_diffs): 2025-09-08T23:03:58,908 a = self.angle_diffs[i, 0] 2025-09-08T23:03:58,908 b = self.angle_diffs[i, 1] 2025-09-08T23:03:58,908 c = self.angle_diffs[i, 2] 2025-09-08T23:03:58,909 ^ 2025-09-08T23:03:58,909 ------------------------------------------------------------ 2025-09-08T23:03:58,909 sella/internal/int_classes.pyx:587:37: Converting to Python object not allowed without gil 2025-09-08T23:03:58,909 Error compiling Cython file: 2025-09-08T23:03:58,909 ------------------------------------------------------------ 2025-09-08T23:03:58,909 ... 2025-09-08T23:03:58,909 cdef double[:] dq_out = memoryview(dq_out_np) 2025-09-08T23:03:58,909 dq_out[:] = dq[:] 2025-09-08T23:03:58,909 cdef int ncba = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:58,909 cdef int i 2025-09-08T23:03:58,910 with nogil: 2025-09-08T23:03:58,910 for i in range(self.ndihedrals): 2025-09-08T23:03:58,910 ^ 2025-09-08T23:03:58,910 ------------------------------------------------------------ 2025-09-08T23:03:58,910 sella/internal/int_classes.pyx:666:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,910 Error compiling Cython file: 2025-09-08T23:03:58,910 ------------------------------------------------------------ 2025-09-08T23:03:58,910 ... 2025-09-08T23:03:58,910 cdef double[:] dq_out = memoryview(dq_out_np) 2025-09-08T23:03:58,910 dq_out[:] = dq[:] 2025-09-08T23:03:58,911 cdef int ncba = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:58,911 cdef int i 2025-09-08T23:03:58,911 with nogil: 2025-09-08T23:03:58,911 for i in range(self.ndihedrals): 2025-09-08T23:03:58,911 ^ 2025-09-08T23:03:58,911 ------------------------------------------------------------ 2025-09-08T23:03:58,911 sella/internal/int_classes.pyx:666:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,911 Error compiling Cython file: 2025-09-08T23:03:58,911 ------------------------------------------------------------ 2025-09-08T23:03:58,911 ... 2025-09-08T23:03:58,911 cdef double[:] dx = memoryview(dx_np) 2025-09-08T23:03:58,912 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,912 cdef double dist 2025-09-08T23:03:58,912 cdef double factr 2025-09-08T23:03:58,912 with nogil: 2025-09-08T23:03:58,912 start = self.ncart + self.nbonds 2025-09-08T23:03:58,912 ^ 2025-09-08T23:03:58,912 ------------------------------------------------------------ 2025-09-08T23:03:58,912 sella/internal/int_classes.pyx:687:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,912 Error compiling Cython file: 2025-09-08T23:03:58,912 ------------------------------------------------------------ 2025-09-08T23:03:58,913 ... 2025-09-08T23:03:58,913 cdef double[:] dx = memoryview(dx_np) 2025-09-08T23:03:58,913 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,913 cdef double dist 2025-09-08T23:03:58,913 cdef double factr 2025-09-08T23:03:58,913 with nogil: 2025-09-08T23:03:58,913 start = self.ncart + self.nbonds 2025-09-08T23:03:58,913 ^ 2025-09-08T23:03:58,913 ------------------------------------------------------------ 2025-09-08T23:03:58,913 sella/internal/int_classes.pyx:687:31: Operation not allowed without gil 2025-09-08T23:03:58,914 Error compiling Cython file: 2025-09-08T23:03:58,914 ------------------------------------------------------------ 2025-09-08T23:03:58,914 ... 2025-09-08T23:03:58,914 cdef double[:] dx = memoryview(dx_np) 2025-09-08T23:03:58,914 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,914 cdef double dist 2025-09-08T23:03:58,914 cdef double factr 2025-09-08T23:03:58,914 with nogil: 2025-09-08T23:03:58,914 start = self.ncart + self.nbonds 2025-09-08T23:03:58,914 ^ 2025-09-08T23:03:58,914 ------------------------------------------------------------ 2025-09-08T23:03:58,915 sella/internal/int_classes.pyx:687:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,915 Error compiling Cython file: 2025-09-08T23:03:58,915 ------------------------------------------------------------ 2025-09-08T23:03:58,915 ... 2025-09-08T23:03:58,915 cdef double[:] dx = memoryview(dx_np) 2025-09-08T23:03:58,915 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,915 cdef double dist 2025-09-08T23:03:58,915 cdef double factr 2025-09-08T23:03:58,915 with nogil: 2025-09-08T23:03:58,915 start = self.ncart + self.nbonds 2025-09-08T23:03:58,915 ^ 2025-09-08T23:03:58,915 ------------------------------------------------------------ 2025-09-08T23:03:58,916 sella/internal/int_classes.pyx:687:37: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,916 Error compiling Cython file: 2025-09-08T23:03:58,916 ------------------------------------------------------------ 2025-09-08T23:03:58,916 ... 2025-09-08T23:03:58,916 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,916 cdef double dist 2025-09-08T23:03:58,916 cdef double factr 2025-09-08T23:03:58,916 with nogil: 2025-09-08T23:03:58,916 start = self.ncart + self.nbonds 2025-09-08T23:03:58,916 for i in range(self.nangles): 2025-09-08T23:03:58,917 ^ 2025-09-08T23:03:58,917 ------------------------------------------------------------ 2025-09-08T23:03:58,917 sella/internal/int_classes.pyx:688:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,917 Error compiling Cython file: 2025-09-08T23:03:58,917 ------------------------------------------------------------ 2025-09-08T23:03:58,917 ... 2025-09-08T23:03:58,917 cdef int sddx = dx.strides[0] >> 3 2025-09-08T23:03:58,917 cdef double dist 2025-09-08T23:03:58,917 cdef double factr 2025-09-08T23:03:58,917 with nogil: 2025-09-08T23:03:58,917 start = self.ncart + self.nbonds 2025-09-08T23:03:58,918 for i in range(self.nangles): 2025-09-08T23:03:58,918 ^ 2025-09-08T23:03:58,918 ------------------------------------------------------------ 2025-09-08T23:03:58,918 sella/internal/int_classes.pyx:688:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,918 Error compiling Cython file: 2025-09-08T23:03:58,918 ------------------------------------------------------------ 2025-09-08T23:03:58,918 ... 2025-09-08T23:03:58,918 cdef double dist 2025-09-08T23:03:58,918 cdef double factr 2025-09-08T23:03:58,918 with nogil: 2025-09-08T23:03:58,919 start = self.ncart + self.nbonds 2025-09-08T23:03:58,919 for i in range(self.nangles): 2025-09-08T23:03:58,919 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,919 ^ 2025-09-08T23:03:58,919 ------------------------------------------------------------ 2025-09-08T23:03:58,919 sella/internal/int_classes.pyx:689:34: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,919 Error compiling Cython file: 2025-09-08T23:03:58,919 ------------------------------------------------------------ 2025-09-08T23:03:58,919 ... 2025-09-08T23:03:58,919 cdef double dist 2025-09-08T23:03:58,920 cdef double factr 2025-09-08T23:03:58,920 with nogil: 2025-09-08T23:03:58,920 start = self.ncart + self.nbonds 2025-09-08T23:03:58,920 for i in range(self.nangles): 2025-09-08T23:03:58,920 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,920 ^ 2025-09-08T23:03:58,920 ------------------------------------------------------------ 2025-09-08T23:03:58,920 sella/internal/int_classes.pyx:689:34: Operation not allowed without gil 2025-09-08T23:03:58,920 Error compiling Cython file: 2025-09-08T23:03:58,921 ------------------------------------------------------------ 2025-09-08T23:03:58,921 ... 2025-09-08T23:03:58,921 cdef double dist 2025-09-08T23:03:58,921 cdef double factr 2025-09-08T23:03:58,921 with nogil: 2025-09-08T23:03:58,921 start = self.ncart + self.nbonds 2025-09-08T23:03:58,921 for i in range(self.nangles): 2025-09-08T23:03:58,921 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,921 ^ 2025-09-08T23:03:58,921 ------------------------------------------------------------ 2025-09-08T23:03:58,921 sella/internal/int_classes.pyx:689:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,922 Error compiling Cython file: 2025-09-08T23:03:58,922 ------------------------------------------------------------ 2025-09-08T23:03:58,922 ... 2025-09-08T23:03:58,922 cdef double dist 2025-09-08T23:03:58,922 cdef double factr 2025-09-08T23:03:58,922 with nogil: 2025-09-08T23:03:58,922 start = self.ncart + self.nbonds 2025-09-08T23:03:58,922 for i in range(self.nangles): 2025-09-08T23:03:58,922 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,922 ^ 2025-09-08T23:03:58,922 ------------------------------------------------------------ 2025-09-08T23:03:58,923 sella/internal/int_classes.pyx:689:43: Indexing Python object not allowed without gil 2025-09-08T23:03:58,923 Error compiling Cython file: 2025-09-08T23:03:58,923 ------------------------------------------------------------ 2025-09-08T23:03:58,923 ... 2025-09-08T23:03:58,923 cdef double dist 2025-09-08T23:03:58,923 cdef double factr 2025-09-08T23:03:58,923 with nogil: 2025-09-08T23:03:58,923 start = self.ncart + self.nbonds 2025-09-08T23:03:58,923 for i in range(self.nangles): 2025-09-08T23:03:58,923 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,923 ^ 2025-09-08T23:03:58,924 ------------------------------------------------------------ 2025-09-08T23:03:58,924 sella/internal/int_classes.pyx:689:40: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,924 Error compiling Cython file: 2025-09-08T23:03:58,924 ------------------------------------------------------------ 2025-09-08T23:03:58,924 ... 2025-09-08T23:03:58,924 cdef double dist 2025-09-08T23:03:58,924 cdef double factr 2025-09-08T23:03:58,924 with nogil: 2025-09-08T23:03:58,924 start = self.ncart + self.nbonds 2025-09-08T23:03:58,924 for i in range(self.nangles): 2025-09-08T23:03:58,925 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,925 ^ 2025-09-08T23:03:58,925 ------------------------------------------------------------ 2025-09-08T23:03:58,925 sella/internal/int_classes.pyx:689:60: Operation not allowed without gil 2025-09-08T23:03:58,925 Error compiling Cython file: 2025-09-08T23:03:58,925 ------------------------------------------------------------ 2025-09-08T23:03:58,925 ... 2025-09-08T23:03:58,925 cdef double dist 2025-09-08T23:03:58,925 cdef double factr 2025-09-08T23:03:58,925 with nogil: 2025-09-08T23:03:58,926 start = self.ncart + self.nbonds 2025-09-08T23:03:58,926 for i in range(self.nangles): 2025-09-08T23:03:58,926 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,926 ^ 2025-09-08T23:03:58,926 ------------------------------------------------------------ 2025-09-08T23:03:58,926 sella/internal/int_classes.pyx:689:57: Converting to Python object not allowed without gil 2025-09-08T23:03:58,926 Error compiling Cython file: 2025-09-08T23:03:58,926 ------------------------------------------------------------ 2025-09-08T23:03:58,926 ... 2025-09-08T23:03:58,926 cdef double dist 2025-09-08T23:03:58,926 cdef double factr 2025-09-08T23:03:58,927 with nogil: 2025-09-08T23:03:58,927 start = self.ncart + self.nbonds 2025-09-08T23:03:58,927 for i in range(self.nangles): 2025-09-08T23:03:58,927 if not (self.atol < self.q1[start + i] < pi - self.atol): 2025-09-08T23:03:58,927 ^ 2025-09-08T23:03:58,927 ------------------------------------------------------------ 2025-09-08T23:03:58,927 sella/internal/int_classes.pyx:689:66: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,927 Error compiling Cython file: 2025-09-08T23:03:58,927 ------------------------------------------------------------ 2025-09-08T23:03:58,927 ... 2025-09-08T23:03:58,928 bad = True 2025-09-08T23:03:58,928 break 2025-09-08T23:03:58,928 if not bad: 2025-09-08T23:03:58,928 # Ignore dummy atoms for this check 2025-09-08T23:03:58,928 for i in range(self.nreal - 1): 2025-09-08T23:03:58,928 ^ 2025-09-08T23:03:58,928 ------------------------------------------------------------ 2025-09-08T23:03:58,928 sella/internal/int_classes.pyx:695:42: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,928 Error compiling Cython file: 2025-09-08T23:03:58,928 ------------------------------------------------------------ 2025-09-08T23:03:58,929 ... 2025-09-08T23:03:58,929 bad = True 2025-09-08T23:03:58,929 break 2025-09-08T23:03:58,929 if not bad: 2025-09-08T23:03:58,929 # Ignore dummy atoms for this check 2025-09-08T23:03:58,929 for i in range(self.nreal - 1): 2025-09-08T23:03:58,929 ^ 2025-09-08T23:03:58,929 ------------------------------------------------------------ 2025-09-08T23:03:58,929 sella/internal/int_classes.pyx:695:42: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,930 Error compiling Cython file: 2025-09-08T23:03:58,930 ------------------------------------------------------------ 2025-09-08T23:03:58,930 ... 2025-09-08T23:03:58,930 bad = True 2025-09-08T23:03:58,930 break 2025-09-08T23:03:58,930 if not bad: 2025-09-08T23:03:58,930 # Ignore dummy atoms for this check 2025-09-08T23:03:58,930 for i in range(self.nreal - 1): 2025-09-08T23:03:58,930 ^ 2025-09-08T23:03:58,930 ------------------------------------------------------------ 2025-09-08T23:03:58,930 sella/internal/int_classes.pyx:695:35: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,931 Error compiling Cython file: 2025-09-08T23:03:58,931 ------------------------------------------------------------ 2025-09-08T23:03:58,931 ... 2025-09-08T23:03:58,931 break 2025-09-08T23:03:58,931 if not bad: 2025-09-08T23:03:58,931 # Ignore dummy atoms for this check 2025-09-08T23:03:58,931 for i in range(self.nreal - 1): 2025-09-08T23:03:58,931 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,931 ^ 2025-09-08T23:03:58,931 ------------------------------------------------------------ 2025-09-08T23:03:58,932 sella/internal/int_classes.pyx:696:46: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,932 Error compiling Cython file: 2025-09-08T23:03:58,932 ------------------------------------------------------------ 2025-09-08T23:03:58,932 ... 2025-09-08T23:03:58,932 break 2025-09-08T23:03:58,932 if not bad: 2025-09-08T23:03:58,932 # Ignore dummy atoms for this check 2025-09-08T23:03:58,932 for i in range(self.nreal - 1): 2025-09-08T23:03:58,932 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,933 ^ 2025-09-08T23:03:58,933 ------------------------------------------------------------ 2025-09-08T23:03:58,933 sella/internal/int_classes.pyx:696:46: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,933 Error compiling Cython file: 2025-09-08T23:03:58,933 ------------------------------------------------------------ 2025-09-08T23:03:58,933 ... 2025-09-08T23:03:58,933 if not bad: 2025-09-08T23:03:58,933 # Ignore dummy atoms for this check 2025-09-08T23:03:58,933 for i in range(self.nreal - 1): 2025-09-08T23:03:58,933 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,934 if self.bmat[i, j]: 2025-09-08T23:03:58,934 ^ 2025-09-08T23:03:58,934 ------------------------------------------------------------ 2025-09-08T23:03:58,934 sella/internal/int_classes.pyx:697:36: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,934 Error compiling Cython file: 2025-09-08T23:03:58,934 ------------------------------------------------------------ 2025-09-08T23:03:58,934 ... 2025-09-08T23:03:58,934 if not bad: 2025-09-08T23:03:58,934 # Ignore dummy atoms for this check 2025-09-08T23:03:58,935 for i in range(self.nreal - 1): 2025-09-08T23:03:58,935 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,935 if self.bmat[i, j]: 2025-09-08T23:03:58,935 ^ 2025-09-08T23:03:58,935 ------------------------------------------------------------ 2025-09-08T23:03:58,935 sella/internal/int_classes.pyx:697:36: Indexing Python object not allowed without gil 2025-09-08T23:03:58,935 Error compiling Cython file: 2025-09-08T23:03:58,935 ------------------------------------------------------------ 2025-09-08T23:03:58,935 ... 2025-09-08T23:03:58,936 if not bad: 2025-09-08T23:03:58,936 # Ignore dummy atoms for this check 2025-09-08T23:03:58,936 for i in range(self.nreal - 1): 2025-09-08T23:03:58,936 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,936 if self.bmat[i, j]: 2025-09-08T23:03:58,936 ^ 2025-09-08T23:03:58,936 ------------------------------------------------------------ 2025-09-08T23:03:58,936 sella/internal/int_classes.pyx:697:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,936 Error compiling Cython file: 2025-09-08T23:03:58,936 ------------------------------------------------------------ 2025-09-08T23:03:58,936 ... 2025-09-08T23:03:58,937 if not bad: 2025-09-08T23:03:58,937 # Ignore dummy atoms for this check 2025-09-08T23:03:58,937 for i in range(self.nreal - 1): 2025-09-08T23:03:58,937 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,937 if self.bmat[i, j]: 2025-09-08T23:03:58,937 ^ 2025-09-08T23:03:58,937 ------------------------------------------------------------ 2025-09-08T23:03:58,937 sella/internal/int_classes.pyx:697:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,937 Error compiling Cython file: 2025-09-08T23:03:58,938 ------------------------------------------------------------ 2025-09-08T23:03:58,938 ... 2025-09-08T23:03:58,938 if not bad: 2025-09-08T23:03:58,938 # Ignore dummy atoms for this check 2025-09-08T23:03:58,938 for i in range(self.nreal - 1): 2025-09-08T23:03:58,938 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,938 if self.bmat[i, j]: 2025-09-08T23:03:58,938 ^ 2025-09-08T23:03:58,938 ------------------------------------------------------------ 2025-09-08T23:03:58,939 sella/internal/int_classes.pyx:697:37: Converting to Python object not allowed without gil 2025-09-08T23:03:58,939 Error compiling Cython file: 2025-09-08T23:03:58,939 ------------------------------------------------------------ 2025-09-08T23:03:58,939 ... 2025-09-08T23:03:58,939 if not bad: 2025-09-08T23:03:58,939 # Ignore dummy atoms for this check 2025-09-08T23:03:58,939 for i in range(self.nreal - 1): 2025-09-08T23:03:58,939 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,939 if self.bmat[i, j]: 2025-09-08T23:03:58,939 ^ 2025-09-08T23:03:58,940 ------------------------------------------------------------ 2025-09-08T23:03:58,940 sella/internal/int_classes.pyx:697:40: Converting to Python object not allowed without gil 2025-09-08T23:03:58,940 Error compiling Cython file: 2025-09-08T23:03:58,940 ------------------------------------------------------------ 2025-09-08T23:03:58,940 ... 2025-09-08T23:03:58,940 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,940 if self.bmat[i, j]: 2025-09-08T23:03:58,940 factr = 0.5 2025-09-08T23:03:58,940 else: 2025-09-08T23:03:58,940 factr = 1.25 2025-09-08T23:03:58,940 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,941 ^ 2025-09-08T23:03:58,941 ------------------------------------------------------------ 2025-09-08T23:03:58,941 sella/internal/int_classes.pyx:701:38: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,941 Error compiling Cython file: 2025-09-08T23:03:58,941 ------------------------------------------------------------ 2025-09-08T23:03:58,941 ... 2025-09-08T23:03:58,941 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,941 if self.bmat[i, j]: 2025-09-08T23:03:58,941 factr = 0.5 2025-09-08T23:03:58,941 else: 2025-09-08T23:03:58,942 factr = 1.25 2025-09-08T23:03:58,942 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,942 ^ 2025-09-08T23:03:58,942 ------------------------------------------------------------ 2025-09-08T23:03:58,942 sella/internal/int_classes.pyx:701:38: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:58,942 Error compiling Cython file: 2025-09-08T23:03:58,942 ------------------------------------------------------------ 2025-09-08T23:03:58,942 ... 2025-09-08T23:03:58,942 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,943 if self.bmat[i, j]: 2025-09-08T23:03:58,943 factr = 0.5 2025-09-08T23:03:58,943 else: 2025-09-08T23:03:58,943 factr = 1.25 2025-09-08T23:03:58,943 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,943 ^ 2025-09-08T23:03:58,943 ------------------------------------------------------------ 2025-09-08T23:03:58,943 sella/internal/int_classes.pyx:701:31: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:58,943 Error compiling Cython file: 2025-09-08T23:03:58,943 ------------------------------------------------------------ 2025-09-08T23:03:58,943 ... 2025-09-08T23:03:58,944 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,944 if self.bmat[i, j]: 2025-09-08T23:03:58,944 factr = 0.5 2025-09-08T23:03:58,944 else: 2025-09-08T23:03:58,944 factr = 1.25 2025-09-08T23:03:58,944 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,944 ^ 2025-09-08T23:03:58,944 ------------------------------------------------------------ 2025-09-08T23:03:58,944 sella/internal/int_classes.pyx:701:38: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,944 Error compiling Cython file: 2025-09-08T23:03:58,945 ------------------------------------------------------------ 2025-09-08T23:03:58,945 ... 2025-09-08T23:03:58,945 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,945 if self.bmat[i, j]: 2025-09-08T23:03:58,945 factr = 0.5 2025-09-08T23:03:58,945 else: 2025-09-08T23:03:58,945 factr = 1.25 2025-09-08T23:03:58,945 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,945 ^ 2025-09-08T23:03:58,945 ------------------------------------------------------------ 2025-09-08T23:03:58,945 sella/internal/int_classes.pyx:701:47: Indexing Python object not allowed without gil 2025-09-08T23:03:58,946 Error compiling Cython file: 2025-09-08T23:03:58,946 ------------------------------------------------------------ 2025-09-08T23:03:58,946 ... 2025-09-08T23:03:58,946 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,946 if self.bmat[i, j]: 2025-09-08T23:03:58,946 factr = 0.5 2025-09-08T23:03:58,946 else: 2025-09-08T23:03:58,946 factr = 1.25 2025-09-08T23:03:58,946 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,946 ^ 2025-09-08T23:03:58,946 ------------------------------------------------------------ 2025-09-08T23:03:58,947 sella/internal/int_classes.pyx:701:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,947 Error compiling Cython file: 2025-09-08T23:03:58,947 ------------------------------------------------------------ 2025-09-08T23:03:58,947 ... 2025-09-08T23:03:58,947 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,947 if self.bmat[i, j]: 2025-09-08T23:03:58,947 factr = 0.5 2025-09-08T23:03:58,947 else: 2025-09-08T23:03:58,947 factr = 1.25 2025-09-08T23:03:58,947 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,947 ^ 2025-09-08T23:03:58,948 ------------------------------------------------------------ 2025-09-08T23:03:58,948 sella/internal/int_classes.pyx:701:60: Indexing Python object not allowed without gil 2025-09-08T23:03:58,948 Error compiling Cython file: 2025-09-08T23:03:58,948 ------------------------------------------------------------ 2025-09-08T23:03:58,948 ... 2025-09-08T23:03:58,948 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,948 if self.bmat[i, j]: 2025-09-08T23:03:58,948 factr = 0.5 2025-09-08T23:03:58,948 else: 2025-09-08T23:03:58,948 factr = 1.25 2025-09-08T23:03:58,948 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,949 ^ 2025-09-08T23:03:58,949 ------------------------------------------------------------ 2025-09-08T23:03:58,949 sella/internal/int_classes.pyx:701:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,949 Error compiling Cython file: 2025-09-08T23:03:58,949 ------------------------------------------------------------ 2025-09-08T23:03:58,949 ... 2025-09-08T23:03:58,949 for j in range(i + 1, self.nreal): 2025-09-08T23:03:58,949 if self.bmat[i, j]: 2025-09-08T23:03:58,949 factr = 0.5 2025-09-08T23:03:58,949 else: 2025-09-08T23:03:58,950 factr = 1.25 2025-09-08T23:03:58,950 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,950 ^ 2025-09-08T23:03:58,950 ------------------------------------------------------------ 2025-09-08T23:03:58,950 sella/internal/int_classes.pyx:701:65: Converting to Python object not allowed without gil 2025-09-08T23:03:58,950 Error compiling Cython file: 2025-09-08T23:03:58,950 ------------------------------------------------------------ 2025-09-08T23:03:58,950 ... 2025-09-08T23:03:58,950 else: 2025-09-08T23:03:58,950 factr = 1.25 2025-09-08T23:03:58,950 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,951 if info != 0: break 2025-09-08T23:03:58,951 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,951 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,951 ^ 2025-09-08T23:03:58,951 ------------------------------------------------------------ 2025-09-08T23:03:58,951 sella/internal/int_classes.pyx:704:32: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,951 Error compiling Cython file: 2025-09-08T23:03:58,951 ------------------------------------------------------------ 2025-09-08T23:03:58,951 ... 2025-09-08T23:03:58,951 else: 2025-09-08T23:03:58,952 factr = 1.25 2025-09-08T23:03:58,952 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,952 if info != 0: break 2025-09-08T23:03:58,952 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,952 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,952 ^ 2025-09-08T23:03:58,952 ------------------------------------------------------------ 2025-09-08T23:03:58,952 sella/internal/int_classes.pyx:704:32: Operation not allowed without gil 2025-09-08T23:03:58,952 Error compiling Cython file: 2025-09-08T23:03:58,952 ------------------------------------------------------------ 2025-09-08T23:03:58,953 ... 2025-09-08T23:03:58,953 else: 2025-09-08T23:03:58,953 factr = 1.25 2025-09-08T23:03:58,953 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,953 if info != 0: break 2025-09-08T23:03:58,953 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,953 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,953 ^ 2025-09-08T23:03:58,953 ------------------------------------------------------------ 2025-09-08T23:03:58,953 sella/internal/int_classes.pyx:704:27: Converting to Python object not allowed without gil 2025-09-08T23:03:58,954 Error compiling Cython file: 2025-09-08T23:03:58,954 ------------------------------------------------------------ 2025-09-08T23:03:58,954 ... 2025-09-08T23:03:58,954 else: 2025-09-08T23:03:58,954 factr = 1.25 2025-09-08T23:03:58,954 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,954 if info != 0: break 2025-09-08T23:03:58,954 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,954 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,954 ^ 2025-09-08T23:03:58,954 ------------------------------------------------------------ 2025-09-08T23:03:58,955 sella/internal/int_classes.pyx:704:40: Operation not allowed without gil 2025-09-08T23:03:58,955 Error compiling Cython file: 2025-09-08T23:03:58,955 ------------------------------------------------------------ 2025-09-08T23:03:58,955 ... 2025-09-08T23:03:58,955 else: 2025-09-08T23:03:58,955 factr = 1.25 2025-09-08T23:03:58,955 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,955 if info != 0: break 2025-09-08T23:03:58,955 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,955 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,956 ^ 2025-09-08T23:03:58,956 ------------------------------------------------------------ 2025-09-08T23:03:58,956 sella/internal/int_classes.pyx:704:34: Converting to Python object not allowed without gil 2025-09-08T23:03:58,956 Error compiling Cython file: 2025-09-08T23:03:58,956 ------------------------------------------------------------ 2025-09-08T23:03:58,956 ... 2025-09-08T23:03:58,956 else: 2025-09-08T23:03:58,956 factr = 1.25 2025-09-08T23:03:58,956 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,956 if info != 0: break 2025-09-08T23:03:58,956 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,957 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,957 ^ 2025-09-08T23:03:58,957 ------------------------------------------------------------ 2025-09-08T23:03:58,957 sella/internal/int_classes.pyx:704:56: Operation not allowed without gil 2025-09-08T23:03:58,957 Error compiling Cython file: 2025-09-08T23:03:58,957 ------------------------------------------------------------ 2025-09-08T23:03:58,957 ... 2025-09-08T23:03:58,957 else: 2025-09-08T23:03:58,957 factr = 1.25 2025-09-08T23:03:58,957 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,958 if info != 0: break 2025-09-08T23:03:58,958 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,958 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,958 ^ 2025-09-08T23:03:58,958 ------------------------------------------------------------ 2025-09-08T23:03:58,958 sella/internal/int_classes.pyx:704:52: Indexing Python object not allowed without gil 2025-09-08T23:03:58,958 Error compiling Cython file: 2025-09-08T23:03:58,958 ------------------------------------------------------------ 2025-09-08T23:03:58,958 ... 2025-09-08T23:03:58,958 else: 2025-09-08T23:03:58,959 factr = 1.25 2025-09-08T23:03:58,959 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,959 if info != 0: break 2025-09-08T23:03:58,959 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,959 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,959 ^ 2025-09-08T23:03:58,959 ------------------------------------------------------------ 2025-09-08T23:03:58,959 sella/internal/int_classes.pyx:704:47: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,959 Error compiling Cython file: 2025-09-08T23:03:58,959 ------------------------------------------------------------ 2025-09-08T23:03:58,959 ... 2025-09-08T23:03:58,960 else: 2025-09-08T23:03:58,960 factr = 1.25 2025-09-08T23:03:58,960 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,960 if info != 0: break 2025-09-08T23:03:58,960 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,960 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,960 ^ 2025-09-08T23:03:58,960 ------------------------------------------------------------ 2025-09-08T23:03:58,960 sella/internal/int_classes.pyx:704:67: Indexing Python object not allowed without gil 2025-09-08T23:03:58,960 Error compiling Cython file: 2025-09-08T23:03:58,961 ------------------------------------------------------------ 2025-09-08T23:03:58,961 ... 2025-09-08T23:03:58,961 else: 2025-09-08T23:03:58,961 factr = 1.25 2025-09-08T23:03:58,961 info = vec_sum(self.pos[i], self.pos[j], dx, -1.) 2025-09-08T23:03:58,961 if info != 0: break 2025-09-08T23:03:58,961 dist = dnrm2(&THREE, &dx[0], &sddx) 2025-09-08T23:03:58,961 if dist < factr * (self.rcov[i] + self.rcov[j]): 2025-09-08T23:03:58,961 ^ 2025-09-08T23:03:58,961 ------------------------------------------------------------ 2025-09-08T23:03:58,961 sella/internal/int_classes.pyx:704:62: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,962 Error compiling Cython file: 2025-09-08T23:03:58,962 ------------------------------------------------------------ 2025-09-08T23:03:58,962 ... 2025-09-08T23:03:58,962 self.tvecs = memoryview(np.zeros((3, self.nx), dtype=np.float64)) 2025-09-08T23:03:58,962 cdef int n, j 2025-09-08T23:03:58,962 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,962 with nogil: 2025-09-08T23:03:58,962 if self.proj_trans: 2025-09-08T23:03:58,962 ^ 2025-09-08T23:03:58,962 ------------------------------------------------------------ 2025-09-08T23:03:58,963 sella/internal/int_classes.pyx:781:19: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,963 Error compiling Cython file: 2025-09-08T23:03:58,963 ------------------------------------------------------------ 2025-09-08T23:03:58,963 ... 2025-09-08T23:03:58,963 self.tvecs = memoryview(np.zeros((3, self.nx), dtype=np.float64)) 2025-09-08T23:03:58,963 cdef int n, j 2025-09-08T23:03:58,963 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,963 with nogil: 2025-09-08T23:03:58,963 if self.proj_trans: 2025-09-08T23:03:58,963 ^ 2025-09-08T23:03:58,964 ------------------------------------------------------------ 2025-09-08T23:03:58,964 sella/internal/int_classes.pyx:781:19: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,964 Error compiling Cython file: 2025-09-08T23:03:58,964 ------------------------------------------------------------ 2025-09-08T23:03:58,964 ... 2025-09-08T23:03:58,964 cdef int n, j 2025-09-08T23:03:58,964 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,964 with nogil: 2025-09-08T23:03:58,964 if self.proj_trans: 2025-09-08T23:03:58,964 for j in range(3): 2025-09-08T23:03:58,965 self.trans_dirs[j] = True 2025-09-08T23:03:58,965 ^ 2025-09-08T23:03:58,965 ------------------------------------------------------------ 2025-09-08T23:03:58,965 sella/internal/int_classes.pyx:783:35: Indexing Python object not allowed without gil 2025-09-08T23:03:58,965 Error compiling Cython file: 2025-09-08T23:03:58,965 ------------------------------------------------------------ 2025-09-08T23:03:58,965 ... 2025-09-08T23:03:58,965 cdef int n, j 2025-09-08T23:03:58,965 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,965 with nogil: 2025-09-08T23:03:58,966 if self.proj_trans: 2025-09-08T23:03:58,966 for j in range(3): 2025-09-08T23:03:58,966 self.trans_dirs[j] = True 2025-09-08T23:03:58,966 ^ 2025-09-08T23:03:58,966 ------------------------------------------------------------ 2025-09-08T23:03:58,966 sella/internal/int_classes.pyx:783:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,966 Error compiling Cython file: 2025-09-08T23:03:58,966 ------------------------------------------------------------ 2025-09-08T23:03:58,966 ... 2025-09-08T23:03:58,966 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,966 with nogil: 2025-09-08T23:03:58,967 if self.proj_trans: 2025-09-08T23:03:58,967 for j in range(3): 2025-09-08T23:03:58,967 self.trans_dirs[j] = True 2025-09-08T23:03:58,967 for n in range(self.ncart): 2025-09-08T23:03:58,967 ^ 2025-09-08T23:03:58,967 ------------------------------------------------------------ 2025-09-08T23:03:58,967 sella/internal/int_classes.pyx:784:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,967 Error compiling Cython file: 2025-09-08T23:03:58,967 ------------------------------------------------------------ 2025-09-08T23:03:58,967 ... 2025-09-08T23:03:58,968 cdef double invsqrtnat = sqrt(1. / self.natoms) 2025-09-08T23:03:58,968 with nogil: 2025-09-08T23:03:58,968 if self.proj_trans: 2025-09-08T23:03:58,968 for j in range(3): 2025-09-08T23:03:58,968 self.trans_dirs[j] = True 2025-09-08T23:03:58,968 for n in range(self.ncart): 2025-09-08T23:03:58,968 ^ 2025-09-08T23:03:58,968 ------------------------------------------------------------ 2025-09-08T23:03:58,968 sella/internal/int_classes.pyx:784:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,968 Error compiling Cython file: 2025-09-08T23:03:58,968 ------------------------------------------------------------ 2025-09-08T23:03:58,969 ... 2025-09-08T23:03:58,969 with nogil: 2025-09-08T23:03:58,969 if self.proj_trans: 2025-09-08T23:03:58,969 for j in range(3): 2025-09-08T23:03:58,969 self.trans_dirs[j] = True 2025-09-08T23:03:58,969 for n in range(self.ncart): 2025-09-08T23:03:58,969 i = self.cart[n, 0] 2025-09-08T23:03:58,969 ^ 2025-09-08T23:03:58,969 ------------------------------------------------------------ 2025-09-08T23:03:58,969 sella/internal/int_classes.pyx:785:29: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,970 Error compiling Cython file: 2025-09-08T23:03:58,970 ------------------------------------------------------------ 2025-09-08T23:03:58,970 ... 2025-09-08T23:03:58,970 with nogil: 2025-09-08T23:03:58,970 if self.proj_trans: 2025-09-08T23:03:58,970 for j in range(3): 2025-09-08T23:03:58,970 self.trans_dirs[j] = True 2025-09-08T23:03:58,970 for n in range(self.ncart): 2025-09-08T23:03:58,970 i = self.cart[n, 0] 2025-09-08T23:03:58,970 ^ 2025-09-08T23:03:58,970 ------------------------------------------------------------ 2025-09-08T23:03:58,971 sella/internal/int_classes.pyx:785:29: Indexing Python object not allowed without gil 2025-09-08T23:03:58,971 Error compiling Cython file: 2025-09-08T23:03:58,971 ------------------------------------------------------------ 2025-09-08T23:03:58,971 ... 2025-09-08T23:03:58,971 with nogil: 2025-09-08T23:03:58,971 if self.proj_trans: 2025-09-08T23:03:58,971 for j in range(3): 2025-09-08T23:03:58,971 self.trans_dirs[j] = True 2025-09-08T23:03:58,971 for n in range(self.ncart): 2025-09-08T23:03:58,971 i = self.cart[n, 0] 2025-09-08T23:03:58,971 ^ 2025-09-08T23:03:58,972 ------------------------------------------------------------ 2025-09-08T23:03:58,972 sella/internal/int_classes.pyx:785:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,972 Error compiling Cython file: 2025-09-08T23:03:58,972 ------------------------------------------------------------ 2025-09-08T23:03:58,972 ... 2025-09-08T23:03:58,972 with nogil: 2025-09-08T23:03:58,972 if self.proj_trans: 2025-09-08T23:03:58,972 for j in range(3): 2025-09-08T23:03:58,972 self.trans_dirs[j] = True 2025-09-08T23:03:58,973 for n in range(self.ncart): 2025-09-08T23:03:58,973 i = self.cart[n, 0] 2025-09-08T23:03:58,973 ^ 2025-09-08T23:03:58,973 ------------------------------------------------------------ 2025-09-08T23:03:58,973 sella/internal/int_classes.pyx:785:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,973 Error compiling Cython file: 2025-09-08T23:03:58,973 ------------------------------------------------------------ 2025-09-08T23:03:58,973 ... 2025-09-08T23:03:58,973 with nogil: 2025-09-08T23:03:58,973 if self.proj_trans: 2025-09-08T23:03:58,974 for j in range(3): 2025-09-08T23:03:58,974 self.trans_dirs[j] = True 2025-09-08T23:03:58,974 for n in range(self.ncart): 2025-09-08T23:03:58,974 i = self.cart[n, 0] 2025-09-08T23:03:58,974 ^ 2025-09-08T23:03:58,974 ------------------------------------------------------------ 2025-09-08T23:03:58,974 sella/internal/int_classes.pyx:785:30: Converting to Python object not allowed without gil 2025-09-08T23:03:58,974 Error compiling Cython file: 2025-09-08T23:03:58,974 ------------------------------------------------------------ 2025-09-08T23:03:58,974 ... 2025-09-08T23:03:58,975 if self.proj_trans: 2025-09-08T23:03:58,975 for j in range(3): 2025-09-08T23:03:58,975 self.trans_dirs[j] = True 2025-09-08T23:03:58,975 for n in range(self.ncart): 2025-09-08T23:03:58,975 i = self.cart[n, 0] 2025-09-08T23:03:58,975 j = self.cart[n, 1] 2025-09-08T23:03:58,975 ^ 2025-09-08T23:03:58,975 ------------------------------------------------------------ 2025-09-08T23:03:58,975 sella/internal/int_classes.pyx:786:29: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,975 Error compiling Cython file: 2025-09-08T23:03:58,975 ------------------------------------------------------------ 2025-09-08T23:03:58,976 ... 2025-09-08T23:03:58,976 if self.proj_trans: 2025-09-08T23:03:58,976 for j in range(3): 2025-09-08T23:03:58,976 self.trans_dirs[j] = True 2025-09-08T23:03:58,976 for n in range(self.ncart): 2025-09-08T23:03:58,976 i = self.cart[n, 0] 2025-09-08T23:03:58,976 j = self.cart[n, 1] 2025-09-08T23:03:58,976 ^ 2025-09-08T23:03:58,976 ------------------------------------------------------------ 2025-09-08T23:03:58,976 sella/internal/int_classes.pyx:786:29: Indexing Python object not allowed without gil 2025-09-08T23:03:58,977 Error compiling Cython file: 2025-09-08T23:03:58,977 ------------------------------------------------------------ 2025-09-08T23:03:58,977 ... 2025-09-08T23:03:58,977 if self.proj_trans: 2025-09-08T23:03:58,977 for j in range(3): 2025-09-08T23:03:58,977 self.trans_dirs[j] = True 2025-09-08T23:03:58,977 for n in range(self.ncart): 2025-09-08T23:03:58,977 i = self.cart[n, 0] 2025-09-08T23:03:58,977 j = self.cart[n, 1] 2025-09-08T23:03:58,977 ^ 2025-09-08T23:03:58,977 ------------------------------------------------------------ 2025-09-08T23:03:58,977 sella/internal/int_classes.pyx:786:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,978 Error compiling Cython file: 2025-09-08T23:03:58,978 ------------------------------------------------------------ 2025-09-08T23:03:58,978 ... 2025-09-08T23:03:58,978 if self.proj_trans: 2025-09-08T23:03:58,978 for j in range(3): 2025-09-08T23:03:58,978 self.trans_dirs[j] = True 2025-09-08T23:03:58,978 for n in range(self.ncart): 2025-09-08T23:03:58,978 i = self.cart[n, 0] 2025-09-08T23:03:58,978 j = self.cart[n, 1] 2025-09-08T23:03:58,978 ^ 2025-09-08T23:03:58,978 ------------------------------------------------------------ 2025-09-08T23:03:58,979 sella/internal/int_classes.pyx:786:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,979 Error compiling Cython file: 2025-09-08T23:03:58,979 ------------------------------------------------------------ 2025-09-08T23:03:58,979 ... 2025-09-08T23:03:58,979 if self.proj_trans: 2025-09-08T23:03:58,979 for j in range(3): 2025-09-08T23:03:58,979 self.trans_dirs[j] = True 2025-09-08T23:03:58,979 for n in range(self.ncart): 2025-09-08T23:03:58,979 i = self.cart[n, 0] 2025-09-08T23:03:58,979 j = self.cart[n, 1] 2025-09-08T23:03:58,980 ^ 2025-09-08T23:03:58,980 ------------------------------------------------------------ 2025-09-08T23:03:58,980 sella/internal/int_classes.pyx:786:30: Converting to Python object not allowed without gil 2025-09-08T23:03:58,980 Error compiling Cython file: 2025-09-08T23:03:58,980 ------------------------------------------------------------ 2025-09-08T23:03:58,980 ... 2025-09-08T23:03:58,980 self.trans_dirs[j] = True 2025-09-08T23:03:58,980 for n in range(self.ncart): 2025-09-08T23:03:58,980 i = self.cart[n, 0] 2025-09-08T23:03:58,980 j = self.cart[n, 1] 2025-09-08T23:03:58,980 fixed[i, j] = True 2025-09-08T23:03:58,981 self.trans_dirs[j] = False 2025-09-08T23:03:58,981 ^ 2025-09-08T23:03:58,981 ------------------------------------------------------------ 2025-09-08T23:03:58,981 sella/internal/int_classes.pyx:788:31: Indexing Python object not allowed without gil 2025-09-08T23:03:58,981 Error compiling Cython file: 2025-09-08T23:03:58,981 ------------------------------------------------------------ 2025-09-08T23:03:58,981 ... 2025-09-08T23:03:58,981 self.trans_dirs[j] = True 2025-09-08T23:03:58,981 for n in range(self.ncart): 2025-09-08T23:03:58,981 i = self.cart[n, 0] 2025-09-08T23:03:58,982 j = self.cart[n, 1] 2025-09-08T23:03:58,982 fixed[i, j] = True 2025-09-08T23:03:58,982 self.trans_dirs[j] = False 2025-09-08T23:03:58,982 ^ 2025-09-08T23:03:58,982 ------------------------------------------------------------ 2025-09-08T23:03:58,982 sella/internal/int_classes.pyx:788:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,982 Error compiling Cython file: 2025-09-08T23:03:58,982 ------------------------------------------------------------ 2025-09-08T23:03:58,982 ... 2025-09-08T23:03:58,982 i = self.cart[n, 0] 2025-09-08T23:03:58,983 j = self.cart[n, 1] 2025-09-08T23:03:58,983 fixed[i, j] = True 2025-09-08T23:03:58,983 self.trans_dirs[j] = False 2025-09-08T23:03:58,983 n = 0 2025-09-08T23:03:58,983 for i in range(self.natoms): 2025-09-08T23:03:58,983 ^ 2025-09-08T23:03:58,983 ------------------------------------------------------------ 2025-09-08T23:03:58,983 sella/internal/int_classes.pyx:790:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,983 Error compiling Cython file: 2025-09-08T23:03:58,983 ------------------------------------------------------------ 2025-09-08T23:03:58,983 ... 2025-09-08T23:03:58,984 i = self.cart[n, 0] 2025-09-08T23:03:58,984 j = self.cart[n, 1] 2025-09-08T23:03:58,984 fixed[i, j] = True 2025-09-08T23:03:58,984 self.trans_dirs[j] = False 2025-09-08T23:03:58,984 n = 0 2025-09-08T23:03:58,984 for i in range(self.natoms): 2025-09-08T23:03:58,984 ^ 2025-09-08T23:03:58,984 ------------------------------------------------------------ 2025-09-08T23:03:58,984 sella/internal/int_classes.pyx:790:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,984 Error compiling Cython file: 2025-09-08T23:03:58,985 ------------------------------------------------------------ 2025-09-08T23:03:58,985 ... 2025-09-08T23:03:58,985 n = 0 2025-09-08T23:03:58,985 for i in range(self.natoms): 2025-09-08T23:03:58,985 for j in range(3): 2025-09-08T23:03:58,985 if fixed[i, j]: 2025-09-08T23:03:58,985 continue 2025-09-08T23:03:58,985 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,985 ^ 2025-09-08T23:03:58,985 ------------------------------------------------------------ 2025-09-08T23:03:58,985 sella/internal/int_classes.pyx:794:29: Indexing Python object not allowed without gil 2025-09-08T23:03:58,986 Error compiling Cython file: 2025-09-08T23:03:58,986 ------------------------------------------------------------ 2025-09-08T23:03:58,986 ... 2025-09-08T23:03:58,986 n = 0 2025-09-08T23:03:58,986 for i in range(self.natoms): 2025-09-08T23:03:58,986 for j in range(3): 2025-09-08T23:03:58,986 if fixed[i, j]: 2025-09-08T23:03:58,986 continue 2025-09-08T23:03:58,986 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,986 ^ 2025-09-08T23:03:58,986 ------------------------------------------------------------ 2025-09-08T23:03:58,987 sella/internal/int_classes.pyx:794:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,987 Error compiling Cython file: 2025-09-08T23:03:58,987 ------------------------------------------------------------ 2025-09-08T23:03:58,987 ... 2025-09-08T23:03:58,987 n = 0 2025-09-08T23:03:58,987 for i in range(self.natoms): 2025-09-08T23:03:58,987 for j in range(3): 2025-09-08T23:03:58,987 if fixed[i, j]: 2025-09-08T23:03:58,987 continue 2025-09-08T23:03:58,987 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,987 ^ 2025-09-08T23:03:58,987 ------------------------------------------------------------ 2025-09-08T23:03:58,988 sella/internal/int_classes.pyx:794:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:58,988 Error compiling Cython file: 2025-09-08T23:03:58,988 ------------------------------------------------------------ 2025-09-08T23:03:58,988 ... 2025-09-08T23:03:58,988 n = 0 2025-09-08T23:03:58,988 for i in range(self.natoms): 2025-09-08T23:03:58,988 for j in range(3): 2025-09-08T23:03:58,988 if fixed[i, j]: 2025-09-08T23:03:58,988 continue 2025-09-08T23:03:58,988 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,989 ^ 2025-09-08T23:03:58,989 ------------------------------------------------------------ 2025-09-08T23:03:58,989 sella/internal/int_classes.pyx:794:36: Converting to Python object not allowed without gil 2025-09-08T23:03:58,989 Error compiling Cython file: 2025-09-08T23:03:58,989 ------------------------------------------------------------ 2025-09-08T23:03:58,989 ... 2025-09-08T23:03:58,989 n = 0 2025-09-08T23:03:58,989 for i in range(self.natoms): 2025-09-08T23:03:58,989 for j in range(3): 2025-09-08T23:03:58,989 if fixed[i, j]: 2025-09-08T23:03:58,989 continue 2025-09-08T23:03:58,990 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,990 ^ 2025-09-08T23:03:58,990 ------------------------------------------------------------ 2025-09-08T23:03:58,990 sella/internal/int_classes.pyx:794:41: Converting to Python object not allowed without gil 2025-09-08T23:03:58,990 Error compiling Cython file: 2025-09-08T23:03:58,990 ------------------------------------------------------------ 2025-09-08T23:03:58,990 ... 2025-09-08T23:03:58,990 if fixed[i, j]: 2025-09-08T23:03:58,990 continue 2025-09-08T23:03:58,991 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,991 n += 1 2025-09-08T23:03:58,991 self.ntrans = 0 2025-09-08T23:03:58,991 ^ 2025-09-08T23:03:58,991 ------------------------------------------------------------ 2025-09-08T23:03:58,991 sella/internal/int_classes.pyx:797:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,991 Error compiling Cython file: 2025-09-08T23:03:58,991 ------------------------------------------------------------ 2025-09-08T23:03:58,991 ... 2025-09-08T23:03:58,992 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,992 n += 1 2025-09-08T23:03:58,992 self.ntrans = 0 2025-09-08T23:03:58,992 for j in range(3): 2025-09-08T23:03:58,992 if self.trans_dirs[j]: 2025-09-08T23:03:58,992 ^ 2025-09-08T23:03:58,992 ------------------------------------------------------------ 2025-09-08T23:03:58,992 sella/internal/int_classes.pyx:799:34: Truth-testing Python object not allowed without gil 2025-09-08T23:03:58,992 Error compiling Cython file: 2025-09-08T23:03:58,993 ------------------------------------------------------------ 2025-09-08T23:03:58,993 ... 2025-09-08T23:03:58,993 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,993 n += 1 2025-09-08T23:03:58,993 self.ntrans = 0 2025-09-08T23:03:58,993 for j in range(3): 2025-09-08T23:03:58,993 if self.trans_dirs[j]: 2025-09-08T23:03:58,993 ^ 2025-09-08T23:03:58,993 ------------------------------------------------------------ 2025-09-08T23:03:58,993 sella/internal/int_classes.pyx:799:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,994 Error compiling Cython file: 2025-09-08T23:03:58,994 ------------------------------------------------------------ 2025-09-08T23:03:58,994 ... 2025-09-08T23:03:58,994 self.Ured[3 * i + j, n] = 1. 2025-09-08T23:03:58,994 n += 1 2025-09-08T23:03:58,994 self.ntrans = 0 2025-09-08T23:03:58,994 for j in range(3): 2025-09-08T23:03:58,994 if self.trans_dirs[j]: 2025-09-08T23:03:58,994 ^ 2025-09-08T23:03:58,994 ------------------------------------------------------------ 2025-09-08T23:03:58,995 sella/internal/int_classes.pyx:799:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,995 Error compiling Cython file: 2025-09-08T23:03:58,995 ------------------------------------------------------------ 2025-09-08T23:03:58,995 ... 2025-09-08T23:03:58,995 n += 1 2025-09-08T23:03:58,995 self.ntrans = 0 2025-09-08T23:03:58,995 for j in range(3): 2025-09-08T23:03:58,995 if self.trans_dirs[j]: 2025-09-08T23:03:58,995 for i in range(self.natoms): 2025-09-08T23:03:58,995 ^ 2025-09-08T23:03:58,996 ------------------------------------------------------------ 2025-09-08T23:03:58,996 sella/internal/int_classes.pyx:800:39: Coercion from Python not allowed without the GIL 2025-09-08T23:03:58,996 Error compiling Cython file: 2025-09-08T23:03:58,996 ------------------------------------------------------------ 2025-09-08T23:03:58,996 ... 2025-09-08T23:03:58,996 n += 1 2025-09-08T23:03:58,996 self.ntrans = 0 2025-09-08T23:03:58,996 for j in range(3): 2025-09-08T23:03:58,996 if self.trans_dirs[j]: 2025-09-08T23:03:58,996 for i in range(self.natoms): 2025-09-08T23:03:58,997 ^ 2025-09-08T23:03:58,997 ------------------------------------------------------------ 2025-09-08T23:03:58,997 sella/internal/int_classes.pyx:800:39: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,997 Error compiling Cython file: 2025-09-08T23:03:58,997 ------------------------------------------------------------ 2025-09-08T23:03:58,997 ... 2025-09-08T23:03:58,997 self.ntrans = 0 2025-09-08T23:03:58,997 for j in range(3): 2025-09-08T23:03:58,997 if self.trans_dirs[j]: 2025-09-08T23:03:58,998 for i in range(self.natoms): 2025-09-08T23:03:58,998 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:58,998 ^ 2025-09-08T23:03:58,998 ------------------------------------------------------------ 2025-09-08T23:03:58,998 sella/internal/int_classes.pyx:801:34: Indexing Python object not allowed without gil 2025-09-08T23:03:58,998 Error compiling Cython file: 2025-09-08T23:03:58,998 ------------------------------------------------------------ 2025-09-08T23:03:58,998 ... 2025-09-08T23:03:58,998 self.ntrans = 0 2025-09-08T23:03:58,999 for j in range(3): 2025-09-08T23:03:58,999 if self.trans_dirs[j]: 2025-09-08T23:03:58,999 for i in range(self.natoms): 2025-09-08T23:03:58,999 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:58,999 ^ 2025-09-08T23:03:58,999 ------------------------------------------------------------ 2025-09-08T23:03:58,999 sella/internal/int_classes.pyx:801:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:58,999 Error compiling Cython file: 2025-09-08T23:03:58,999 ------------------------------------------------------------ 2025-09-08T23:03:58,999 ... 2025-09-08T23:03:59,000 self.ntrans = 0 2025-09-08T23:03:59,000 for j in range(3): 2025-09-08T23:03:59,000 if self.trans_dirs[j]: 2025-09-08T23:03:59,000 for i in range(self.natoms): 2025-09-08T23:03:59,000 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,000 ^ 2025-09-08T23:03:59,000 ------------------------------------------------------------ 2025-09-08T23:03:59,000 sella/internal/int_classes.pyx:801:34: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,000 Error compiling Cython file: 2025-09-08T23:03:59,000 ------------------------------------------------------------ 2025-09-08T23:03:59,001 ... 2025-09-08T23:03:59,001 self.ntrans = 0 2025-09-08T23:03:59,001 for j in range(3): 2025-09-08T23:03:59,001 if self.trans_dirs[j]: 2025-09-08T23:03:59,001 for i in range(self.natoms): 2025-09-08T23:03:59,001 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,001 ^ 2025-09-08T23:03:59,001 ------------------------------------------------------------ 2025-09-08T23:03:59,001 sella/internal/int_classes.pyx:801:39: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,002 Error compiling Cython file: 2025-09-08T23:03:59,002 ------------------------------------------------------------ 2025-09-08T23:03:59,002 ... 2025-09-08T23:03:59,002 self.ntrans = 0 2025-09-08T23:03:59,002 for j in range(3): 2025-09-08T23:03:59,002 if self.trans_dirs[j]: 2025-09-08T23:03:59,002 for i in range(self.natoms): 2025-09-08T23:03:59,002 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,002 ^ 2025-09-08T23:03:59,002 ------------------------------------------------------------ 2025-09-08T23:03:59,003 sella/internal/int_classes.pyx:801:54: Converting to Python object not allowed without gil 2025-09-08T23:03:59,003 Error compiling Cython file: 2025-09-08T23:03:59,003 ------------------------------------------------------------ 2025-09-08T23:03:59,003 ... 2025-09-08T23:03:59,003 self.ntrans = 0 2025-09-08T23:03:59,003 for j in range(3): 2025-09-08T23:03:59,003 if self.trans_dirs[j]: 2025-09-08T23:03:59,003 for i in range(self.natoms): 2025-09-08T23:03:59,003 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,003 ^ 2025-09-08T23:03:59,003 ------------------------------------------------------------ 2025-09-08T23:03:59,004 sella/internal/int_classes.pyx:801:61: Converting to Python object not allowed without gil 2025-09-08T23:03:59,004 Error compiling Cython file: 2025-09-08T23:03:59,004 ------------------------------------------------------------ 2025-09-08T23:03:59,004 ... 2025-09-08T23:03:59,004 self.ntrans = 0 2025-09-08T23:03:59,004 for j in range(3): 2025-09-08T23:03:59,004 if self.trans_dirs[j]: 2025-09-08T23:03:59,004 for i in range(self.natoms): 2025-09-08T23:03:59,004 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,004 self.ntrans += 1 2025-09-08T23:03:59,005 ^ 2025-09-08T23:03:59,005 ------------------------------------------------------------ 2025-09-08T23:03:59,005 sella/internal/int_classes.pyx:802:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,005 Error compiling Cython file: 2025-09-08T23:03:59,005 ------------------------------------------------------------ 2025-09-08T23:03:59,005 ... 2025-09-08T23:03:59,005 self.ntrans = 0 2025-09-08T23:03:59,005 for j in range(3): 2025-09-08T23:03:59,005 if self.trans_dirs[j]: 2025-09-08T23:03:59,005 for i in range(self.natoms): 2025-09-08T23:03:59,006 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,006 self.ntrans += 1 2025-09-08T23:03:59,006 ^ 2025-09-08T23:03:59,006 ------------------------------------------------------------ 2025-09-08T23:03:59,006 sella/internal/int_classes.pyx:802:24: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,006 Error compiling Cython file: 2025-09-08T23:03:59,006 ------------------------------------------------------------ 2025-09-08T23:03:59,006 ... 2025-09-08T23:03:59,006 self.ntrans = 0 2025-09-08T23:03:59,006 for j in range(3): 2025-09-08T23:03:59,007 if self.trans_dirs[j]: 2025-09-08T23:03:59,007 for i in range(self.natoms): 2025-09-08T23:03:59,007 self.tvecs[self.ntrans, 3 * i + j] = invsqrtnat 2025-09-08T23:03:59,007 self.ntrans += 1 2025-09-08T23:03:59,007 ^ 2025-09-08T23:03:59,007 ------------------------------------------------------------ 2025-09-08T23:03:59,007 sella/internal/int_classes.pyx:802:24: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,007 Error compiling Cython file: 2025-09-08T23:03:59,007 ------------------------------------------------------------ 2025-09-08T23:03:59,007 ... 2025-09-08T23:03:59,007 bint grad=False, 2025-09-08T23:03:59,008 bint curv=False, 2025-09-08T23:03:59,008 bint force=False) nogil except -1: 2025-09-08T23:03:59,008 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,008 return -1 2025-09-08T23:03:59,008 if not self.calc_required and not force: 2025-09-08T23:03:59,008 ^ 2025-09-08T23:03:59,008 ------------------------------------------------------------ 2025-09-08T23:03:59,008 sella/internal/int_classes.pyx:838:19: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,008 Error compiling Cython file: 2025-09-08T23:03:59,008 ------------------------------------------------------------ 2025-09-08T23:03:59,009 ... 2025-09-08T23:03:59,009 bint grad=False, 2025-09-08T23:03:59,009 bint curv=False, 2025-09-08T23:03:59,009 bint force=False) nogil except -1: 2025-09-08T23:03:59,009 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,009 return -1 2025-09-08T23:03:59,009 if not self.calc_required and not force: 2025-09-08T23:03:59,009 ^ 2025-09-08T23:03:59,009 ------------------------------------------------------------ 2025-09-08T23:03:59,009 sella/internal/int_classes.pyx:838:19: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,010 Error compiling Cython file: 2025-09-08T23:03:59,010 ------------------------------------------------------------ 2025-09-08T23:03:59,010 ... 2025-09-08T23:03:59,010 bint curv=False, 2025-09-08T23:03:59,010 bint force=False) nogil except -1: 2025-09-08T23:03:59,010 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,010 return -1 2025-09-08T23:03:59,010 if not self.calc_required and not force: 2025-09-08T23:03:59,010 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:59,010 ^ 2025-09-08T23:03:59,010 ------------------------------------------------------------ 2025-09-08T23:03:59,011 sella/internal/int_classes.pyx:839:20: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,011 Error compiling Cython file: 2025-09-08T23:03:59,011 ------------------------------------------------------------ 2025-09-08T23:03:59,011 ... 2025-09-08T23:03:59,011 bint curv=False, 2025-09-08T23:03:59,011 bint force=False) nogil except -1: 2025-09-08T23:03:59,011 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,011 return -1 2025-09-08T23:03:59,011 if not self.calc_required and not force: 2025-09-08T23:03:59,011 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:59,012 ^ 2025-09-08T23:03:59,012 ------------------------------------------------------------ 2025-09-08T23:03:59,012 sella/internal/int_classes.pyx:839:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,012 Error compiling Cython file: 2025-09-08T23:03:59,012 ------------------------------------------------------------ 2025-09-08T23:03:59,012 ... 2025-09-08T23:03:59,012 bint curv=False, 2025-09-08T23:03:59,012 bint force=False) nogil except -1: 2025-09-08T23:03:59,012 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,013 return -1 2025-09-08T23:03:59,013 if not self.calc_required and not force: 2025-09-08T23:03:59,013 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:59,013 ^ 2025-09-08T23:03:59,013 ------------------------------------------------------------ 2025-09-08T23:03:59,013 sella/internal/int_classes.pyx:839:48: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,013 Error compiling Cython file: 2025-09-08T23:03:59,013 ------------------------------------------------------------ 2025-09-08T23:03:59,013 ... 2025-09-08T23:03:59,013 bint curv=False, 2025-09-08T23:03:59,013 bint force=False) nogil except -1: 2025-09-08T23:03:59,014 if not self._validate_pos(pos, dummypos): 2025-09-08T23:03:59,014 return -1 2025-09-08T23:03:59,014 if not self.calc_required and not force: 2025-09-08T23:03:59,014 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:59,014 ^ 2025-09-08T23:03:59,014 ------------------------------------------------------------ 2025-09-08T23:03:59,014 sella/internal/int_classes.pyx:839:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,014 Error compiling Cython file: 2025-09-08T23:03:59,014 ------------------------------------------------------------ 2025-09-08T23:03:59,014 ... 2025-09-08T23:03:59,015 if (self.grad or not grad) and (self.curv or not curv): 2025-09-08T23:03:59,015 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:59,015 return 0 2025-09-08T23:03:59,015 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,015 self.calc_res = False 2025-09-08T23:03:59,015 ^ 2025-09-08T23:03:59,015 ------------------------------------------------------------ 2025-09-08T23:03:59,015 sella/internal/int_classes.pyx:844:12: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,015 Error compiling Cython file: 2025-09-08T23:03:59,016 ------------------------------------------------------------ 2025-09-08T23:03:59,016 ... 2025-09-08T23:03:59,016 if not self.geom_changed(pos, dummypos): 2025-09-08T23:03:59,016 return 0 2025-09-08T23:03:59,016 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,016 self.calc_res = False 2025-09-08T23:03:59,016 if self.nq == 0: 2025-09-08T23:03:59,016 ^ 2025-09-08T23:03:59,016 ------------------------------------------------------------ 2025-09-08T23:03:59,016 sella/internal/int_classes.pyx:845:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,017 Error compiling Cython file: 2025-09-08T23:03:59,017 ------------------------------------------------------------ 2025-09-08T23:03:59,017 ... 2025-09-08T23:03:59,017 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,017 self.calc_res = False 2025-09-08T23:03:59,017 if self.nq == 0: 2025-09-08T23:03:59,017 return 0 2025-09-08T23:03:59,017 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,017 ^ 2025-09-08T23:03:59,017 ------------------------------------------------------------ 2025-09-08T23:03:59,018 sella/internal/int_classes.pyx:847:24: Indexing Python object not allowed without gil 2025-09-08T23:03:59,018 Error compiling Cython file: 2025-09-08T23:03:59,018 ------------------------------------------------------------ 2025-09-08T23:03:59,018 ... 2025-09-08T23:03:59,018 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,018 self.calc_res = False 2025-09-08T23:03:59,018 if self.nq == 0: 2025-09-08T23:03:59,018 return 0 2025-09-08T23:03:59,018 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,018 ^ 2025-09-08T23:03:59,019 ------------------------------------------------------------ 2025-09-08T23:03:59,019 sella/internal/int_classes.pyx:847:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,019 Error compiling Cython file: 2025-09-08T23:03:59,019 ------------------------------------------------------------ 2025-09-08T23:03:59,019 ... 2025-09-08T23:03:59,019 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,019 self.calc_res = False 2025-09-08T23:03:59,019 if self.nq == 0: 2025-09-08T23:03:59,019 return 0 2025-09-08T23:03:59,019 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,020 ^ 2025-09-08T23:03:59,020 ------------------------------------------------------------ 2025-09-08T23:03:59,020 sella/internal/int_classes.pyx:847:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,020 Error compiling Cython file: 2025-09-08T23:03:59,020 ------------------------------------------------------------ 2025-09-08T23:03:59,020 ... 2025-09-08T23:03:59,020 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,020 self.calc_res = False 2025-09-08T23:03:59,020 if self.nq == 0: 2025-09-08T23:03:59,021 return 0 2025-09-08T23:03:59,021 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,021 ^ 2025-09-08T23:03:59,021 ------------------------------------------------------------ 2025-09-08T23:03:59,021 sella/internal/int_classes.pyx:847:40: Operation not allowed without gil 2025-09-08T23:03:59,021 Error compiling Cython file: 2025-09-08T23:03:59,021 ------------------------------------------------------------ 2025-09-08T23:03:59,021 ... 2025-09-08T23:03:59,021 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,022 self.calc_res = False 2025-09-08T23:03:59,022 if self.nq == 0: 2025-09-08T23:03:59,022 return 0 2025-09-08T23:03:59,022 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,022 ^ 2025-09-08T23:03:59,022 ------------------------------------------------------------ 2025-09-08T23:03:59,022 sella/internal/int_classes.pyx:847:36: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,022 Error compiling Cython file: 2025-09-08T23:03:59,022 ------------------------------------------------------------ 2025-09-08T23:03:59,022 ... 2025-09-08T23:03:59,023 cdef int i, err, sddq, sdt, ntot, sdr 2025-09-08T23:03:59,023 self.calc_res = False 2025-09-08T23:03:59,023 if self.nq == 0: 2025-09-08T23:03:59,023 return 0 2025-09-08T23:03:59,023 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,023 ^ 2025-09-08T23:03:59,023 ------------------------------------------------------------ 2025-09-08T23:03:59,023 sella/internal/int_classes.pyx:847:42: Converting to Python object not allowed without gil 2025-09-08T23:03:59,023 Error compiling Cython file: 2025-09-08T23:03:59,023 ------------------------------------------------------------ 2025-09-08T23:03:59,024 ... 2025-09-08T23:03:59,024 return 0 2025-09-08T23:03:59,024 memset(&self.res[0], 0, self.nq * sizeof(double)) 2025-09-08T23:03:59,024 err = CartToInternal._update(self, pos, dummypos, grad, 2025-09-08T23:03:59,024 curv, True) 2025-09-08T23:03:59,024 if err != 0: 2025-09-08T23:03:59,024 self.calc_required = True 2025-09-08T23:03:59,024 ^ 2025-09-08T23:03:59,024 ------------------------------------------------------------ 2025-09-08T23:03:59,024 sella/internal/int_classes.pyx:851:16: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,025 Error compiling Cython file: 2025-09-08T23:03:59,025 ------------------------------------------------------------ 2025-09-08T23:03:59,025 ... 2025-09-08T23:03:59,025 curv, True) 2025-09-08T23:03:59,025 if err != 0: 2025-09-08T23:03:59,025 self.calc_required = True 2025-09-08T23:03:59,025 return err 2025-09-08T23:03:59,025 if not self.grad: 2025-09-08T23:03:59,025 ^ 2025-09-08T23:03:59,025 ------------------------------------------------------------ 2025-09-08T23:03:59,025 sella/internal/int_classes.pyx:854:19: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,026 Error compiling Cython file: 2025-09-08T23:03:59,026 ------------------------------------------------------------ 2025-09-08T23:03:59,026 ... 2025-09-08T23:03:59,026 curv, True) 2025-09-08T23:03:59,026 if err != 0: 2025-09-08T23:03:59,026 self.calc_required = True 2025-09-08T23:03:59,026 return err 2025-09-08T23:03:59,026 if not self.grad: 2025-09-08T23:03:59,026 ^ 2025-09-08T23:03:59,026 ------------------------------------------------------------ 2025-09-08T23:03:59,027 sella/internal/int_classes.pyx:854:19: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,027 Error compiling Cython file: 2025-09-08T23:03:59,027 ------------------------------------------------------------ 2025-09-08T23:03:59,027 ... 2025-09-08T23:03:59,027 return err 2025-09-08T23:03:59,027 if not self.grad: 2025-09-08T23:03:59,027 return 0 2025-09-08T23:03:59,027 if self.proj_trans: 2025-09-08T23:03:59,028 ^ 2025-09-08T23:03:59,028 ------------------------------------------------------------ 2025-09-08T23:03:59,028 sella/internal/int_classes.pyx:857:15: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,028 Error compiling Cython file: 2025-09-08T23:03:59,028 ------------------------------------------------------------ 2025-09-08T23:03:59,028 ... 2025-09-08T23:03:59,028 return err 2025-09-08T23:03:59,028 if not self.grad: 2025-09-08T23:03:59,028 return 0 2025-09-08T23:03:59,029 if self.proj_trans: 2025-09-08T23:03:59,029 ^ 2025-09-08T23:03:59,029 ------------------------------------------------------------ 2025-09-08T23:03:59,029 sella/internal/int_classes.pyx:857:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,029 Error compiling Cython file: 2025-09-08T23:03:59,029 ------------------------------------------------------------ 2025-09-08T23:03:59,029 ... 2025-09-08T23:03:59,029 if not self.grad: 2025-09-08T23:03:59,030 return 0 2025-09-08T23:03:59,030 if self.proj_trans: 2025-09-08T23:03:59,030 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,030 ^ 2025-09-08T23:03:59,030 ------------------------------------------------------------ 2025-09-08T23:03:59,030 sella/internal/int_classes.pyx:858:38: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,030 Error compiling Cython file: 2025-09-08T23:03:59,030 ------------------------------------------------------------ 2025-09-08T23:03:59,031 ... 2025-09-08T23:03:59,031 if not self.grad: 2025-09-08T23:03:59,031 return 0 2025-09-08T23:03:59,031 if self.proj_trans: 2025-09-08T23:03:59,031 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,031 ^ 2025-09-08T23:03:59,031 ------------------------------------------------------------ 2025-09-08T23:03:59,031 sella/internal/int_classes.pyx:858:38: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,031 Error compiling Cython file: 2025-09-08T23:03:59,032 ------------------------------------------------------------ 2025-09-08T23:03:59,032 ... 2025-09-08T23:03:59,032 if not self.grad: 2025-09-08T23:03:59,032 return 0 2025-09-08T23:03:59,032 if self.proj_trans: 2025-09-08T23:03:59,032 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,032 ^ 2025-09-08T23:03:59,032 ------------------------------------------------------------ 2025-09-08T23:03:59,032 sella/internal/int_classes.pyx:858:34: Indexing Python object not allowed without gil 2025-09-08T23:03:59,033 Error compiling Cython file: 2025-09-08T23:03:59,033 ------------------------------------------------------------ 2025-09-08T23:03:59,033 ... 2025-09-08T23:03:59,033 if not self.grad: 2025-09-08T23:03:59,033 return 0 2025-09-08T23:03:59,033 if self.proj_trans: 2025-09-08T23:03:59,033 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,033 ^ 2025-09-08T23:03:59,033 ------------------------------------------------------------ 2025-09-08T23:03:59,034 sella/internal/int_classes.pyx:858:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,034 Error compiling Cython file: 2025-09-08T23:03:59,034 ------------------------------------------------------------ 2025-09-08T23:03:59,034 ... 2025-09-08T23:03:59,034 if not self.grad: 2025-09-08T23:03:59,034 return 0 2025-09-08T23:03:59,034 if self.proj_trans: 2025-09-08T23:03:59,034 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,034 ^ 2025-09-08T23:03:59,035 ------------------------------------------------------------ 2025-09-08T23:03:59,035 sella/internal/int_classes.pyx:858:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,035 Error compiling Cython file: 2025-09-08T23:03:59,035 ------------------------------------------------------------ 2025-09-08T23:03:59,035 ... 2025-09-08T23:03:59,035 if not self.grad: 2025-09-08T23:03:59,035 return 0 2025-09-08T23:03:59,035 if self.proj_trans: 2025-09-08T23:03:59,035 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,036 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,036 ^ 2025-09-08T23:03:59,036 ------------------------------------------------------------ 2025-09-08T23:03:59,036 sella/internal/int_classes.pyx:859:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,036 Error compiling Cython file: 2025-09-08T23:03:59,036 ------------------------------------------------------------ 2025-09-08T23:03:59,036 ... 2025-09-08T23:03:59,036 if not self.grad: 2025-09-08T23:03:59,036 return 0 2025-09-08T23:03:59,036 if self.proj_trans: 2025-09-08T23:03:59,037 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,037 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,037 ^ 2025-09-08T23:03:59,037 ------------------------------------------------------------ 2025-09-08T23:03:59,037 sella/internal/int_classes.pyx:859:40: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,037 Error compiling Cython file: 2025-09-08T23:03:59,037 ------------------------------------------------------------ 2025-09-08T23:03:59,037 ... 2025-09-08T23:03:59,037 if not self.grad: 2025-09-08T23:03:59,037 return 0 2025-09-08T23:03:59,038 if self.proj_trans: 2025-09-08T23:03:59,038 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,038 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,038 ^ 2025-09-08T23:03:59,038 ------------------------------------------------------------ 2025-09-08T23:03:59,038 sella/internal/int_classes.pyx:859:36: Indexing Python object not allowed without gil 2025-09-08T23:03:59,038 Error compiling Cython file: 2025-09-08T23:03:59,038 ------------------------------------------------------------ 2025-09-08T23:03:59,038 ... 2025-09-08T23:03:59,039 if not self.grad: 2025-09-08T23:03:59,039 return 0 2025-09-08T23:03:59,039 if self.proj_trans: 2025-09-08T23:03:59,039 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,039 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,039 ^ 2025-09-08T23:03:59,039 ------------------------------------------------------------ 2025-09-08T23:03:59,039 sella/internal/int_classes.pyx:859:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,039 Error compiling Cython file: 2025-09-08T23:03:59,039 ------------------------------------------------------------ 2025-09-08T23:03:59,040 ... 2025-09-08T23:03:59,040 if not self.grad: 2025-09-08T23:03:59,040 return 0 2025-09-08T23:03:59,040 if self.proj_trans: 2025-09-08T23:03:59,040 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,040 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,040 ^ 2025-09-08T23:03:59,040 ------------------------------------------------------------ 2025-09-08T23:03:59,040 sella/internal/int_classes.pyx:859:22: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,041 Error compiling Cython file: 2025-09-08T23:03:59,041 ------------------------------------------------------------ 2025-09-08T23:03:59,041 ... 2025-09-08T23:03:59,041 return 0 2025-09-08T23:03:59,041 if self.proj_trans: 2025-09-08T23:03:59,041 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,041 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,041 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,041 ^ 2025-09-08T23:03:59,041 ------------------------------------------------------------ 2025-09-08T23:03:59,041 sella/internal/int_classes.pyx:860:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,042 Error compiling Cython file: 2025-09-08T23:03:59,042 ------------------------------------------------------------ 2025-09-08T23:03:59,042 ... 2025-09-08T23:03:59,042 return 0 2025-09-08T23:03:59,042 if self.proj_trans: 2025-09-08T23:03:59,042 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,042 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,042 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,042 ^ 2025-09-08T23:03:59,042 ------------------------------------------------------------ 2025-09-08T23:03:59,043 sella/internal/int_classes.pyx:860:31: Operation not allowed without gil 2025-09-08T23:03:59,043 Error compiling Cython file: 2025-09-08T23:03:59,043 ------------------------------------------------------------ 2025-09-08T23:03:59,043 ... 2025-09-08T23:03:59,043 return 0 2025-09-08T23:03:59,043 if self.proj_trans: 2025-09-08T23:03:59,043 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,043 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,043 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,044 ^ 2025-09-08T23:03:59,044 ------------------------------------------------------------ 2025-09-08T23:03:59,044 sella/internal/int_classes.pyx:860:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,044 Error compiling Cython file: 2025-09-08T23:03:59,044 ------------------------------------------------------------ 2025-09-08T23:03:59,044 ... 2025-09-08T23:03:59,044 return 0 2025-09-08T23:03:59,044 if self.proj_trans: 2025-09-08T23:03:59,044 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,044 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,045 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,045 ^ 2025-09-08T23:03:59,045 ------------------------------------------------------------ 2025-09-08T23:03:59,045 sella/internal/int_classes.pyx:860:37: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,045 Error compiling Cython file: 2025-09-08T23:03:59,045 ------------------------------------------------------------ 2025-09-08T23:03:59,045 ... 2025-09-08T23:03:59,045 if self.proj_trans: 2025-09-08T23:03:59,045 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,046 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,046 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,046 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,046 ^ 2025-09-08T23:03:59,046 ------------------------------------------------------------ 2025-09-08T23:03:59,046 sella/internal/int_classes.pyx:861:36: Indexing Python object not allowed without gil 2025-09-08T23:03:59,046 Error compiling Cython file: 2025-09-08T23:03:59,046 ------------------------------------------------------------ 2025-09-08T23:03:59,046 ... 2025-09-08T23:03:59,046 if self.proj_trans: 2025-09-08T23:03:59,047 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,047 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,047 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,047 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,047 ^ 2025-09-08T23:03:59,047 ------------------------------------------------------------ 2025-09-08T23:03:59,047 sella/internal/int_classes.pyx:861:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,047 Error compiling Cython file: 2025-09-08T23:03:59,047 ------------------------------------------------------------ 2025-09-08T23:03:59,047 ... 2025-09-08T23:03:59,048 if self.proj_trans: 2025-09-08T23:03:59,048 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,048 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,048 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,048 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,048 ^ 2025-09-08T23:03:59,048 ------------------------------------------------------------ 2025-09-08T23:03:59,048 sella/internal/int_classes.pyx:861:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,048 Error compiling Cython file: 2025-09-08T23:03:59,048 ------------------------------------------------------------ 2025-09-08T23:03:59,049 ... 2025-09-08T23:03:59,049 if self.proj_trans: 2025-09-08T23:03:59,049 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,049 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,049 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,049 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,049 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,049 ^ 2025-09-08T23:03:59,049 ------------------------------------------------------------ 2025-09-08T23:03:59,049 sella/internal/int_classes.pyx:862:26: Indexing Python object not allowed without gil 2025-09-08T23:03:59,050 Error compiling Cython file: 2025-09-08T23:03:59,050 ------------------------------------------------------------ 2025-09-08T23:03:59,050 ... 2025-09-08T23:03:59,050 if self.proj_trans: 2025-09-08T23:03:59,050 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,050 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,050 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,050 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,050 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,050 ^ 2025-09-08T23:03:59,050 ------------------------------------------------------------ 2025-09-08T23:03:59,051 sella/internal/int_classes.pyx:862:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,051 Error compiling Cython file: 2025-09-08T23:03:59,051 ------------------------------------------------------------ 2025-09-08T23:03:59,051 ... 2025-09-08T23:03:59,051 if self.proj_trans: 2025-09-08T23:03:59,051 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,051 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,051 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,051 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,051 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,052 ^ 2025-09-08T23:03:59,052 ------------------------------------------------------------ 2025-09-08T23:03:59,052 sella/internal/int_classes.pyx:862:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,052 Error compiling Cython file: 2025-09-08T23:03:59,052 ------------------------------------------------------------ 2025-09-08T23:03:59,052 ... 2025-09-08T23:03:59,052 if self.proj_trans: 2025-09-08T23:03:59,052 sddq = self.dq.strides[2] >> 3 2025-09-08T23:03:59,052 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,052 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,053 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,053 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,053 ^ 2025-09-08T23:03:59,053 ------------------------------------------------------------ 2025-09-08T23:03:59,053 sella/internal/int_classes.pyx:862:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,053 Error compiling Cython file: 2025-09-08T23:03:59,053 ------------------------------------------------------------ 2025-09-08T23:03:59,053 ... 2025-09-08T23:03:59,053 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,053 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,054 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,054 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,054 if self.proj_rot: 2025-09-08T23:03:59,054 ^ 2025-09-08T23:03:59,054 ------------------------------------------------------------ 2025-09-08T23:03:59,054 sella/internal/int_classes.pyx:864:15: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,054 Error compiling Cython file: 2025-09-08T23:03:59,054 ------------------------------------------------------------ 2025-09-08T23:03:59,054 ... 2025-09-08T23:03:59,054 sdt = self.tvecs.strides[1] >> 3 2025-09-08T23:03:59,055 ntot = self.ntrans * self.nx 2025-09-08T23:03:59,055 dcopy(&ntot, &self.tvecs[0, 0], &sdt, 2025-09-08T23:03:59,055 &self.dq[self.ninternal, 0, 0], &sddq) 2025-09-08T23:03:59,055 if self.proj_rot: 2025-09-08T23:03:59,055 ^ 2025-09-08T23:03:59,055 ------------------------------------------------------------ 2025-09-08T23:03:59,055 sella/internal/int_classes.pyx:864:15: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,055 Error compiling Cython file: 2025-09-08T23:03:59,055 ------------------------------------------------------------ 2025-09-08T23:03:59,056 ... 2025-09-08T23:03:59,056 if self.proj_rot: 2025-09-08T23:03:59,056 err = self.project_rotation() 2025-09-08T23:03:59,056 if err != 0: return err 2025-09-08T23:03:59,056 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,056 ^ 2025-09-08T23:03:59,056 ------------------------------------------------------------ 2025-09-08T23:03:59,056 sella/internal/int_classes.pyx:868:40: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,056 Error compiling Cython file: 2025-09-08T23:03:59,057 ------------------------------------------------------------ 2025-09-08T23:03:59,057 ... 2025-09-08T23:03:59,057 if self.proj_rot: 2025-09-08T23:03:59,057 err = self.project_rotation() 2025-09-08T23:03:59,057 if err != 0: return err 2025-09-08T23:03:59,057 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,057 ^ 2025-09-08T23:03:59,057 ------------------------------------------------------------ 2025-09-08T23:03:59,057 sella/internal/int_classes.pyx:868:40: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,058 Error compiling Cython file: 2025-09-08T23:03:59,058 ------------------------------------------------------------ 2025-09-08T23:03:59,058 ... 2025-09-08T23:03:59,058 if self.proj_rot: 2025-09-08T23:03:59,058 err = self.project_rotation() 2025-09-08T23:03:59,058 if err != 0: return err 2025-09-08T23:03:59,058 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,058 ^ 2025-09-08T23:03:59,058 ------------------------------------------------------------ 2025-09-08T23:03:59,059 sella/internal/int_classes.pyx:868:36: Indexing Python object not allowed without gil 2025-09-08T23:03:59,059 Error compiling Cython file: 2025-09-08T23:03:59,059 ------------------------------------------------------------ 2025-09-08T23:03:59,059 ... 2025-09-08T23:03:59,059 if self.proj_rot: 2025-09-08T23:03:59,059 err = self.project_rotation() 2025-09-08T23:03:59,059 if err != 0: return err 2025-09-08T23:03:59,059 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,059 ^ 2025-09-08T23:03:59,060 ------------------------------------------------------------ 2025-09-08T23:03:59,060 sella/internal/int_classes.pyx:868:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,060 Error compiling Cython file: 2025-09-08T23:03:59,060 ------------------------------------------------------------ 2025-09-08T23:03:59,060 ... 2025-09-08T23:03:59,060 if self.proj_rot: 2025-09-08T23:03:59,060 err = self.project_rotation() 2025-09-08T23:03:59,060 if err != 0: return err 2025-09-08T23:03:59,060 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,061 ^ 2025-09-08T23:03:59,061 ------------------------------------------------------------ 2025-09-08T23:03:59,061 sella/internal/int_classes.pyx:868:22: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,061 Error compiling Cython file: 2025-09-08T23:03:59,061 ------------------------------------------------------------ 2025-09-08T23:03:59,061 ... 2025-09-08T23:03:59,061 if self.proj_rot: 2025-09-08T23:03:59,061 err = self.project_rotation() 2025-09-08T23:03:59,061 if err != 0: return err 2025-09-08T23:03:59,062 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,062 ntot = self.nrot * self.nx 2025-09-08T23:03:59,062 ^ 2025-09-08T23:03:59,062 ------------------------------------------------------------ 2025-09-08T23:03:59,062 sella/internal/int_classes.pyx:869:29: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,062 Error compiling Cython file: 2025-09-08T23:03:59,062 ------------------------------------------------------------ 2025-09-08T23:03:59,062 ... 2025-09-08T23:03:59,062 if self.proj_rot: 2025-09-08T23:03:59,062 err = self.project_rotation() 2025-09-08T23:03:59,063 if err != 0: return err 2025-09-08T23:03:59,063 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,063 ntot = self.nrot * self.nx 2025-09-08T23:03:59,063 ^ 2025-09-08T23:03:59,063 ------------------------------------------------------------ 2025-09-08T23:03:59,063 sella/internal/int_classes.pyx:869:29: Operation not allowed without gil 2025-09-08T23:03:59,063 Error compiling Cython file: 2025-09-08T23:03:59,063 ------------------------------------------------------------ 2025-09-08T23:03:59,063 ... 2025-09-08T23:03:59,063 if self.proj_rot: 2025-09-08T23:03:59,064 err = self.project_rotation() 2025-09-08T23:03:59,064 if err != 0: return err 2025-09-08T23:03:59,064 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,064 ntot = self.nrot * self.nx 2025-09-08T23:03:59,064 ^ 2025-09-08T23:03:59,064 ------------------------------------------------------------ 2025-09-08T23:03:59,064 sella/internal/int_classes.pyx:869:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,064 Error compiling Cython file: 2025-09-08T23:03:59,064 ------------------------------------------------------------ 2025-09-08T23:03:59,065 ... 2025-09-08T23:03:59,065 if self.proj_rot: 2025-09-08T23:03:59,065 err = self.project_rotation() 2025-09-08T23:03:59,065 if err != 0: return err 2025-09-08T23:03:59,065 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,065 ntot = self.nrot * self.nx 2025-09-08T23:03:59,065 ^ 2025-09-08T23:03:59,065 ------------------------------------------------------------ 2025-09-08T23:03:59,065 sella/internal/int_classes.pyx:869:35: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,066 Error compiling Cython file: 2025-09-08T23:03:59,066 ------------------------------------------------------------ 2025-09-08T23:03:59,066 ... 2025-09-08T23:03:59,066 err = self.project_rotation() 2025-09-08T23:03:59,066 if err != 0: return err 2025-09-08T23:03:59,066 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,066 ntot = self.nrot * self.nx 2025-09-08T23:03:59,066 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,066 ^ 2025-09-08T23:03:59,066 ------------------------------------------------------------ 2025-09-08T23:03:59,066 sella/internal/int_classes.pyx:870:36: Indexing Python object not allowed without gil 2025-09-08T23:03:59,067 Error compiling Cython file: 2025-09-08T23:03:59,067 ------------------------------------------------------------ 2025-09-08T23:03:59,067 ... 2025-09-08T23:03:59,067 err = self.project_rotation() 2025-09-08T23:03:59,067 if err != 0: return err 2025-09-08T23:03:59,067 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,067 ntot = self.nrot * self.nx 2025-09-08T23:03:59,067 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,067 ^ 2025-09-08T23:03:59,067 ------------------------------------------------------------ 2025-09-08T23:03:59,068 sella/internal/int_classes.pyx:870:30: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,068 Error compiling Cython file: 2025-09-08T23:03:59,068 ------------------------------------------------------------ 2025-09-08T23:03:59,068 ... 2025-09-08T23:03:59,068 err = self.project_rotation() 2025-09-08T23:03:59,068 if err != 0: return err 2025-09-08T23:03:59,068 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,068 ntot = self.nrot * self.nx 2025-09-08T23:03:59,068 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,068 ^ 2025-09-08T23:03:59,069 ------------------------------------------------------------ 2025-09-08T23:03:59,069 sella/internal/int_classes.pyx:870:36: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,069 Error compiling Cython file: 2025-09-08T23:03:59,069 ------------------------------------------------------------ 2025-09-08T23:03:59,069 ... 2025-09-08T23:03:59,069 if err != 0: return err 2025-09-08T23:03:59,069 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,069 ntot = self.nrot * self.nx 2025-09-08T23:03:59,069 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,070 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,070 ^ 2025-09-08T23:03:59,070 ------------------------------------------------------------ 2025-09-08T23:03:59,070 sella/internal/int_classes.pyx:871:26: Indexing Python object not allowed without gil 2025-09-08T23:03:59,070 Error compiling Cython file: 2025-09-08T23:03:59,070 ------------------------------------------------------------ 2025-09-08T23:03:59,070 ... 2025-09-08T23:03:59,070 if err != 0: return err 2025-09-08T23:03:59,071 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,071 ntot = self.nrot * self.nx 2025-09-08T23:03:59,071 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,071 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,071 ^ 2025-09-08T23:03:59,071 ------------------------------------------------------------ 2025-09-08T23:03:59,071 sella/internal/int_classes.pyx:871:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,071 Error compiling Cython file: 2025-09-08T23:03:59,071 ------------------------------------------------------------ 2025-09-08T23:03:59,072 ... 2025-09-08T23:03:59,072 if err != 0: return err 2025-09-08T23:03:59,072 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,072 ntot = self.nrot * self.nx 2025-09-08T23:03:59,072 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,072 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,072 ^ 2025-09-08T23:03:59,072 ------------------------------------------------------------ 2025-09-08T23:03:59,072 sella/internal/int_classes.pyx:871:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,073 Error compiling Cython file: 2025-09-08T23:03:59,073 ------------------------------------------------------------ 2025-09-08T23:03:59,073 ... 2025-09-08T23:03:59,073 if err != 0: return err 2025-09-08T23:03:59,073 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,073 ntot = self.nrot * self.nx 2025-09-08T23:03:59,073 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,073 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,073 ^ 2025-09-08T23:03:59,073 ------------------------------------------------------------ 2025-09-08T23:03:59,073 sella/internal/int_classes.pyx:871:42: Operation not allowed without gil 2025-09-08T23:03:59,074 Error compiling Cython file: 2025-09-08T23:03:59,074 ------------------------------------------------------------ 2025-09-08T23:03:59,074 ... 2025-09-08T23:03:59,074 if err != 0: return err 2025-09-08T23:03:59,074 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,074 ntot = self.nrot * self.nx 2025-09-08T23:03:59,074 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,074 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,074 ^ 2025-09-08T23:03:59,074 ------------------------------------------------------------ 2025-09-08T23:03:59,075 sella/internal/int_classes.pyx:871:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,075 Error compiling Cython file: 2025-09-08T23:03:59,075 ------------------------------------------------------------ 2025-09-08T23:03:59,075 ... 2025-09-08T23:03:59,075 if err != 0: return err 2025-09-08T23:03:59,075 sdr = self.rvecs.strides[1] >> 3 2025-09-08T23:03:59,075 ntot = self.nrot * self.nx 2025-09-08T23:03:59,075 dcopy(&ntot, &self.rvecs[0, 0], &sdr, 2025-09-08T23:03:59,075 &self.dq[self.ninternal + self.ntrans, 0, 0], &sddq) 2025-09-08T23:03:59,075 ^ 2025-09-08T23:03:59,076 ------------------------------------------------------------ 2025-09-08T23:03:59,076 sella/internal/int_classes.pyx:871:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,076 Error compiling Cython file: 2025-09-08T23:03:59,076 ------------------------------------------------------------ 2025-09-08T23:03:59,076 ... 2025-09-08T23:03:59,076 return 0 2025-09-08T23:03:59,076 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,076 cdef int i, j 2025-09-08T23:03:59,077 for i in range(self.nrot): 2025-09-08T23:03:59,077 ^ 2025-09-08T23:03:59,077 ------------------------------------------------------------ 2025-09-08T23:03:59,077 sella/internal/int_classes.pyx:878:27: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,077 Error compiling Cython file: 2025-09-08T23:03:59,077 ------------------------------------------------------------ 2025-09-08T23:03:59,077 ... 2025-09-08T23:03:59,077 return 0 2025-09-08T23:03:59,078 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,078 cdef int i, j 2025-09-08T23:03:59,078 for i in range(self.nrot): 2025-09-08T23:03:59,078 ^ 2025-09-08T23:03:59,078 ------------------------------------------------------------ 2025-09-08T23:03:59,078 sella/internal/int_classes.pyx:878:27: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,078 Error compiling Cython file: 2025-09-08T23:03:59,078 ------------------------------------------------------------ 2025-09-08T23:03:59,078 ... 2025-09-08T23:03:59,079 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,079 cdef int i, j 2025-09-08T23:03:59,079 for i in range(self.nrot): 2025-09-08T23:03:59,079 for j in range(self.natoms): 2025-09-08T23:03:59,079 ^ 2025-09-08T23:03:59,079 ------------------------------------------------------------ 2025-09-08T23:03:59,079 sella/internal/int_classes.pyx:879:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,079 Error compiling Cython file: 2025-09-08T23:03:59,079 ------------------------------------------------------------ 2025-09-08T23:03:59,079 ... 2025-09-08T23:03:59,080 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,080 cdef int i, j 2025-09-08T23:03:59,080 for i in range(self.nrot): 2025-09-08T23:03:59,080 for j in range(self.natoms): 2025-09-08T23:03:59,080 ^ 2025-09-08T23:03:59,080 ------------------------------------------------------------ 2025-09-08T23:03:59,080 sella/internal/int_classes.pyx:879:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,080 Error compiling Cython file: 2025-09-08T23:03:59,081 ------------------------------------------------------------ 2025-09-08T23:03:59,081 ... 2025-09-08T23:03:59,081 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,081 cdef int i, j 2025-09-08T23:03:59,081 for i in range(self.nrot): 2025-09-08T23:03:59,081 for j in range(self.natoms): 2025-09-08T23:03:59,081 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,081 ^ 2025-09-08T23:03:59,081 ------------------------------------------------------------ 2025-09-08T23:03:59,081 sella/internal/int_classes.pyx:880:21: Discarding owned Python object not allowed without gil 2025-09-08T23:03:59,082 Error compiling Cython file: 2025-09-08T23:03:59,082 ------------------------------------------------------------ 2025-09-08T23:03:59,082 ... 2025-09-08T23:03:59,082 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,082 cdef int i, j 2025-09-08T23:03:59,082 for i in range(self.nrot): 2025-09-08T23:03:59,082 for j in range(self.natoms): 2025-09-08T23:03:59,082 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,082 ^ 2025-09-08T23:03:59,082 ------------------------------------------------------------ 2025-09-08T23:03:59,083 sella/internal/int_classes.pyx:880:21: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,083 Error compiling Cython file: 2025-09-08T23:03:59,083 ------------------------------------------------------------ 2025-09-08T23:03:59,083 ... 2025-09-08T23:03:59,083 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,083 cdef int i, j 2025-09-08T23:03:59,083 for i in range(self.nrot): 2025-09-08T23:03:59,083 for j in range(self.natoms): 2025-09-08T23:03:59,083 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,083 ^ 2025-09-08T23:03:59,084 ------------------------------------------------------------ 2025-09-08T23:03:59,084 sella/internal/int_classes.pyx:880:16: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:59,084 Error compiling Cython file: 2025-09-08T23:03:59,084 ------------------------------------------------------------ 2025-09-08T23:03:59,084 ... 2025-09-08T23:03:59,084 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,084 cdef int i, j 2025-09-08T23:03:59,084 for i in range(self.nrot): 2025-09-08T23:03:59,084 for j in range(self.natoms): 2025-09-08T23:03:59,085 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,085 ^ 2025-09-08T23:03:59,085 ------------------------------------------------------------ 2025-09-08T23:03:59,085 sella/internal/int_classes.pyx:880:21: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,085 Error compiling Cython file: 2025-09-08T23:03:59,085 ------------------------------------------------------------ 2025-09-08T23:03:59,085 ... 2025-09-08T23:03:59,085 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,085 cdef int i, j 2025-09-08T23:03:59,085 for i in range(self.nrot): 2025-09-08T23:03:59,086 for j in range(self.natoms): 2025-09-08T23:03:59,086 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,086 ^ 2025-09-08T23:03:59,086 ------------------------------------------------------------ 2025-09-08T23:03:59,086 sella/internal/int_classes.pyx:880:35: Indexing Python object not allowed without gil 2025-09-08T23:03:59,086 Error compiling Cython file: 2025-09-08T23:03:59,086 ------------------------------------------------------------ 2025-09-08T23:03:59,086 ... 2025-09-08T23:03:59,086 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,087 cdef int i, j 2025-09-08T23:03:59,087 for i in range(self.nrot): 2025-09-08T23:03:59,087 for j in range(self.natoms): 2025-09-08T23:03:59,087 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,087 ^ 2025-09-08T23:03:59,087 ------------------------------------------------------------ 2025-09-08T23:03:59,087 sella/internal/int_classes.pyx:880:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,087 Error compiling Cython file: 2025-09-08T23:03:59,087 ------------------------------------------------------------ 2025-09-08T23:03:59,087 ... 2025-09-08T23:03:59,088 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,088 cdef int i, j 2025-09-08T23:03:59,088 for i in range(self.nrot): 2025-09-08T23:03:59,088 for j in range(self.natoms): 2025-09-08T23:03:59,088 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,088 ^ 2025-09-08T23:03:59,088 ------------------------------------------------------------ 2025-09-08T23:03:59,088 sella/internal/int_classes.pyx:880:48: Indexing Python object not allowed without gil 2025-09-08T23:03:59,088 Error compiling Cython file: 2025-09-08T23:03:59,088 ------------------------------------------------------------ 2025-09-08T23:03:59,089 ... 2025-09-08T23:03:59,089 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,089 cdef int i, j 2025-09-08T23:03:59,089 for i in range(self.nrot): 2025-09-08T23:03:59,089 for j in range(self.natoms): 2025-09-08T23:03:59,089 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,089 ^ 2025-09-08T23:03:59,089 ------------------------------------------------------------ 2025-09-08T23:03:59,089 sella/internal/int_classes.pyx:880:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,090 Error compiling Cython file: 2025-09-08T23:03:59,090 ------------------------------------------------------------ 2025-09-08T23:03:59,090 ... 2025-09-08T23:03:59,090 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,090 cdef int i, j 2025-09-08T23:03:59,090 for i in range(self.nrot): 2025-09-08T23:03:59,090 for j in range(self.natoms): 2025-09-08T23:03:59,090 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,090 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,090 ^ 2025-09-08T23:03:59,091 ------------------------------------------------------------ 2025-09-08T23:03:59,091 sella/internal/int_classes.pyx:881:32: Indexing Python object not allowed without gil 2025-09-08T23:03:59,091 Error compiling Cython file: 2025-09-08T23:03:59,091 ------------------------------------------------------------ 2025-09-08T23:03:59,091 ... 2025-09-08T23:03:59,091 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,091 cdef int i, j 2025-09-08T23:03:59,091 for i in range(self.nrot): 2025-09-08T23:03:59,091 for j in range(self.natoms): 2025-09-08T23:03:59,091 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,091 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,092 ^ 2025-09-08T23:03:59,092 ------------------------------------------------------------ 2025-09-08T23:03:59,092 sella/internal/int_classes.pyx:881:26: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,092 Error compiling Cython file: 2025-09-08T23:03:59,092 ------------------------------------------------------------ 2025-09-08T23:03:59,092 ... 2025-09-08T23:03:59,092 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,092 cdef int i, j 2025-09-08T23:03:59,092 for i in range(self.nrot): 2025-09-08T23:03:59,092 for j in range(self.natoms): 2025-09-08T23:03:59,093 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,093 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,093 ^ 2025-09-08T23:03:59,093 ------------------------------------------------------------ 2025-09-08T23:03:59,093 sella/internal/int_classes.pyx:881:32: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,093 Error compiling Cython file: 2025-09-08T23:03:59,093 ------------------------------------------------------------ 2025-09-08T23:03:59,093 ... 2025-09-08T23:03:59,093 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,093 cdef int i, j 2025-09-08T23:03:59,094 for i in range(self.nrot): 2025-09-08T23:03:59,094 for j in range(self.natoms): 2025-09-08T23:03:59,094 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,094 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,094 ^ 2025-09-08T23:03:59,094 ------------------------------------------------------------ 2025-09-08T23:03:59,094 sella/internal/int_classes.pyx:881:33: Converting to Python object not allowed without gil 2025-09-08T23:03:59,094 Error compiling Cython file: 2025-09-08T23:03:59,094 ------------------------------------------------------------ 2025-09-08T23:03:59,094 ... 2025-09-08T23:03:59,094 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,095 cdef int i, j 2025-09-08T23:03:59,095 for i in range(self.nrot): 2025-09-08T23:03:59,095 for j in range(self.natoms): 2025-09-08T23:03:59,095 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,095 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,095 ^ 2025-09-08T23:03:59,095 ------------------------------------------------------------ 2025-09-08T23:03:59,095 sella/internal/int_classes.pyx:881:32: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,095 Error compiling Cython file: 2025-09-08T23:03:59,095 ------------------------------------------------------------ 2025-09-08T23:03:59,096 ... 2025-09-08T23:03:59,096 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,096 cdef int i, j 2025-09-08T23:03:59,096 for i in range(self.nrot): 2025-09-08T23:03:59,096 for j in range(self.natoms): 2025-09-08T23:03:59,096 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,096 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,096 ^ 2025-09-08T23:03:59,096 ------------------------------------------------------------ 2025-09-08T23:03:59,096 sella/internal/int_classes.pyx:881:37: Converting to Python object not allowed without gil 2025-09-08T23:03:59,097 Error compiling Cython file: 2025-09-08T23:03:59,097 ------------------------------------------------------------ 2025-09-08T23:03:59,097 ... 2025-09-08T23:03:59,097 cdef int project_rotation(Constraints self) nogil: 2025-09-08T23:03:59,097 cdef int i, j 2025-09-08T23:03:59,097 for i in range(self.nrot): 2025-09-08T23:03:59,097 for j in range(self.natoms): 2025-09-08T23:03:59,097 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,097 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,097 ^ 2025-09-08T23:03:59,097 ------------------------------------------------------------ 2025-09-08T23:03:59,097 sella/internal/int_classes.pyx:881:43: Converting to Python object not allowed without gil 2025-09-08T23:03:59,098 Error compiling Cython file: 2025-09-08T23:03:59,098 ------------------------------------------------------------ 2025-09-08T23:03:59,098 ... 2025-09-08T23:03:59,098 cdef int i, j 2025-09-08T23:03:59,098 for i in range(self.nrot): 2025-09-08T23:03:59,098 for j in range(self.natoms): 2025-09-08T23:03:59,098 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,098 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,098 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,098 ^ 2025-09-08T23:03:59,098 ------------------------------------------------------------ 2025-09-08T23:03:59,099 sella/internal/int_classes.pyx:882:26: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,099 Error compiling Cython file: 2025-09-08T23:03:59,099 ------------------------------------------------------------ 2025-09-08T23:03:59,099 ... 2025-09-08T23:03:59,099 cdef int i, j 2025-09-08T23:03:59,099 for i in range(self.nrot): 2025-09-08T23:03:59,099 for j in range(self.natoms): 2025-09-08T23:03:59,099 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,099 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,099 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,099 ^ 2025-09-08T23:03:59,100 ------------------------------------------------------------ 2025-09-08T23:03:59,100 sella/internal/int_classes.pyx:882:26: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,100 Error compiling Cython file: 2025-09-08T23:03:59,100 ------------------------------------------------------------ 2025-09-08T23:03:59,100 ... 2025-09-08T23:03:59,100 cdef int i, j 2025-09-08T23:03:59,100 for i in range(self.nrot): 2025-09-08T23:03:59,100 for j in range(self.natoms): 2025-09-08T23:03:59,100 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,100 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,101 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,101 ^ 2025-09-08T23:03:59,101 ------------------------------------------------------------ 2025-09-08T23:03:59,101 sella/internal/int_classes.pyx:882:23: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:59,101 Error compiling Cython file: 2025-09-08T23:03:59,101 ------------------------------------------------------------ 2025-09-08T23:03:59,101 ... 2025-09-08T23:03:59,101 cdef int i, j 2025-09-08T23:03:59,101 for i in range(self.nrot): 2025-09-08T23:03:59,101 for j in range(self.natoms): 2025-09-08T23:03:59,101 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,102 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,102 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,102 ^ 2025-09-08T23:03:59,102 ------------------------------------------------------------ 2025-09-08T23:03:59,102 sella/internal/int_classes.pyx:882:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,102 Error compiling Cython file: 2025-09-08T23:03:59,102 ------------------------------------------------------------ 2025-09-08T23:03:59,102 ... 2025-09-08T23:03:59,102 cdef int i, j 2025-09-08T23:03:59,102 for i in range(self.nrot): 2025-09-08T23:03:59,103 for j in range(self.natoms): 2025-09-08T23:03:59,103 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,103 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,103 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,103 ^ 2025-09-08T23:03:59,103 ------------------------------------------------------------ 2025-09-08T23:03:59,103 sella/internal/int_classes.pyx:882:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,103 Error compiling Cython file: 2025-09-08T23:03:59,103 ------------------------------------------------------------ 2025-09-08T23:03:59,103 ... 2025-09-08T23:03:59,104 cdef int i, j 2025-09-08T23:03:59,104 for i in range(self.nrot): 2025-09-08T23:03:59,104 for j in range(self.natoms): 2025-09-08T23:03:59,104 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,104 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,104 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,104 ^ 2025-09-08T23:03:59,104 ------------------------------------------------------------ 2025-09-08T23:03:59,104 sella/internal/int_classes.pyx:882:37: Indexing Python object not allowed without gil 2025-09-08T23:03:59,104 Error compiling Cython file: 2025-09-08T23:03:59,104 ------------------------------------------------------------ 2025-09-08T23:03:59,105 ... 2025-09-08T23:03:59,105 cdef int i, j 2025-09-08T23:03:59,105 for i in range(self.nrot): 2025-09-08T23:03:59,105 for j in range(self.natoms): 2025-09-08T23:03:59,105 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,105 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,105 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,105 ^ 2025-09-08T23:03:59,105 ------------------------------------------------------------ 2025-09-08T23:03:59,105 sella/internal/int_classes.pyx:882:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,106 Error compiling Cython file: 2025-09-08T23:03:59,106 ------------------------------------------------------------ 2025-09-08T23:03:59,106 ... 2025-09-08T23:03:59,106 cdef int i, j 2025-09-08T23:03:59,106 for i in range(self.nrot): 2025-09-08T23:03:59,106 for j in range(self.natoms): 2025-09-08T23:03:59,106 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,106 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,106 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,106 ^ 2025-09-08T23:03:59,106 ------------------------------------------------------------ 2025-09-08T23:03:59,107 sella/internal/int_classes.pyx:882:37: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,107 Error compiling Cython file: 2025-09-08T23:03:59,107 ------------------------------------------------------------ 2025-09-08T23:03:59,107 ... 2025-09-08T23:03:59,107 cdef int i, j 2025-09-08T23:03:59,107 for i in range(self.nrot): 2025-09-08T23:03:59,107 for j in range(self.natoms): 2025-09-08T23:03:59,107 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,107 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,107 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,108 ^ 2025-09-08T23:03:59,108 ------------------------------------------------------------ 2025-09-08T23:03:59,108 sella/internal/int_classes.pyx:882:37: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,108 Error compiling Cython file: 2025-09-08T23:03:59,108 ------------------------------------------------------------ 2025-09-08T23:03:59,108 ... 2025-09-08T23:03:59,108 cdef int i, j 2025-09-08T23:03:59,108 for i in range(self.nrot): 2025-09-08T23:03:59,108 for j in range(self.natoms): 2025-09-08T23:03:59,108 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,109 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,109 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,109 ^ 2025-09-08T23:03:59,109 ------------------------------------------------------------ 2025-09-08T23:03:59,109 sella/internal/int_classes.pyx:882:43: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,109 Error compiling Cython file: 2025-09-08T23:03:59,109 ------------------------------------------------------------ 2025-09-08T23:03:59,109 ... 2025-09-08T23:03:59,109 cdef int i, j 2025-09-08T23:03:59,109 for i in range(self.nrot): 2025-09-08T23:03:59,109 for j in range(self.natoms): 2025-09-08T23:03:59,110 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,110 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,110 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,110 ^ 2025-09-08T23:03:59,110 ------------------------------------------------------------ 2025-09-08T23:03:59,110 sella/internal/int_classes.pyx:882:37: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,110 Error compiling Cython file: 2025-09-08T23:03:59,110 ------------------------------------------------------------ 2025-09-08T23:03:59,110 ... 2025-09-08T23:03:59,110 cdef int i, j 2025-09-08T23:03:59,111 for i in range(self.nrot): 2025-09-08T23:03:59,111 for j in range(self.natoms): 2025-09-08T23:03:59,111 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,111 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,111 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,111 ^ 2025-09-08T23:03:59,111 ------------------------------------------------------------ 2025-09-08T23:03:59,111 sella/internal/int_classes.pyx:882:66: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,111 Error compiling Cython file: 2025-09-08T23:03:59,111 ------------------------------------------------------------ 2025-09-08T23:03:59,111 ... 2025-09-08T23:03:59,112 cdef int i, j 2025-09-08T23:03:59,112 for i in range(self.nrot): 2025-09-08T23:03:59,112 for j in range(self.natoms): 2025-09-08T23:03:59,112 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,112 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,112 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,112 ^ 2025-09-08T23:03:59,112 ------------------------------------------------------------ 2025-09-08T23:03:59,112 sella/internal/int_classes.pyx:882:60: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,113 Error compiling Cython file: 2025-09-08T23:03:59,113 ------------------------------------------------------------ 2025-09-08T23:03:59,113 ... 2025-09-08T23:03:59,113 for j in range(self.natoms): 2025-09-08T23:03:59,113 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,113 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,113 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,113 if err < 0: return err 2025-09-08T23:03:59,113 if err < self.nrot: return -1 2025-09-08T23:03:59,113 ^ 2025-09-08T23:03:59,113 ------------------------------------------------------------ 2025-09-08T23:03:59,113 sella/internal/int_classes.pyx:884:15: Truth-testing Python object not allowed without gil 2025-09-08T23:03:59,114 Error compiling Cython file: 2025-09-08T23:03:59,114 ------------------------------------------------------------ 2025-09-08T23:03:59,114 ... 2025-09-08T23:03:59,114 for j in range(self.natoms): 2025-09-08T23:03:59,114 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,114 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,114 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,114 if err < 0: return err 2025-09-08T23:03:59,114 if err < self.nrot: return -1 2025-09-08T23:03:59,114 ^ 2025-09-08T23:03:59,114 ------------------------------------------------------------ 2025-09-08T23:03:59,115 sella/internal/int_classes.pyx:884:15: Operation not allowed without gil 2025-09-08T23:03:59,115 Error compiling Cython file: 2025-09-08T23:03:59,115 ------------------------------------------------------------ 2025-09-08T23:03:59,115 ... 2025-09-08T23:03:59,115 for j in range(self.natoms): 2025-09-08T23:03:59,115 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,115 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,115 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,115 if err < 0: return err 2025-09-08T23:03:59,115 if err < self.nrot: return -1 2025-09-08T23:03:59,115 ^ 2025-09-08T23:03:59,116 ------------------------------------------------------------ 2025-09-08T23:03:59,116 sella/internal/int_classes.pyx:884:11: Converting to Python object not allowed without gil 2025-09-08T23:03:59,116 Error compiling Cython file: 2025-09-08T23:03:59,116 ------------------------------------------------------------ 2025-09-08T23:03:59,116 ... 2025-09-08T23:03:59,116 for j in range(self.natoms): 2025-09-08T23:03:59,116 cross(self.rot_axes[i], self.pos[j], 2025-09-08T23:03:59,116 self.rvecs[i, 3*j : 3*(j+1)]) 2025-09-08T23:03:59,116 cdef int err = mgs(self.rvecs[:self.nrot, :].T, self.tvecs.T) 2025-09-08T23:03:59,116 if err < 0: return err 2025-09-08T23:03:59,117 if err < self.nrot: return -1 2025-09-08T23:03:59,117 ^ 2025-09-08T23:03:59,117 ------------------------------------------------------------ 2025-09-08T23:03:59,117 sella/internal/int_classes.pyx:884:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,117 Error compiling Cython file: 2025-09-08T23:03:59,117 ------------------------------------------------------------ 2025-09-08T23:03:59,117 ... 2025-09-08T23:03:59,117 "".format(info)) 2025-09-08T23:03:59,117 if self.calc_res: 2025-09-08T23:03:59,117 return np.asarray(self.res) 2025-09-08T23:03:59,117 cdef int i, n 2025-09-08T23:03:59,118 with nogil: 2025-09-08T23:03:59,118 for i in range(self.ninternal): 2025-09-08T23:03:59,118 ^ 2025-09-08T23:03:59,118 ------------------------------------------------------------ 2025-09-08T23:03:59,118 sella/internal/int_classes.pyx:899:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,118 Error compiling Cython file: 2025-09-08T23:03:59,118 ------------------------------------------------------------ 2025-09-08T23:03:59,118 ... 2025-09-08T23:03:59,118 "".format(info)) 2025-09-08T23:03:59,118 if self.calc_res: 2025-09-08T23:03:59,119 return np.asarray(self.res) 2025-09-08T23:03:59,119 cdef int i, n 2025-09-08T23:03:59,119 with nogil: 2025-09-08T23:03:59,119 for i in range(self.ninternal): 2025-09-08T23:03:59,119 ^ 2025-09-08T23:03:59,119 ------------------------------------------------------------ 2025-09-08T23:03:59,119 sella/internal/int_classes.pyx:899:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,119 Error compiling Cython file: 2025-09-08T23:03:59,119 ------------------------------------------------------------ 2025-09-08T23:03:59,119 ... 2025-09-08T23:03:59,119 if self.calc_res: 2025-09-08T23:03:59,120 return np.asarray(self.res) 2025-09-08T23:03:59,120 cdef int i, n 2025-09-08T23:03:59,120 with nogil: 2025-09-08T23:03:59,120 for i in range(self.ninternal): 2025-09-08T23:03:59,120 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,120 ^ 2025-09-08T23:03:59,120 ------------------------------------------------------------ 2025-09-08T23:03:59,120 sella/internal/int_classes.pyx:900:24: Indexing Python object not allowed without gil 2025-09-08T23:03:59,120 Error compiling Cython file: 2025-09-08T23:03:59,120 ------------------------------------------------------------ 2025-09-08T23:03:59,121 ... 2025-09-08T23:03:59,121 if self.calc_res: 2025-09-08T23:03:59,121 return np.asarray(self.res) 2025-09-08T23:03:59,121 cdef int i, n 2025-09-08T23:03:59,121 with nogil: 2025-09-08T23:03:59,121 for i in range(self.ninternal): 2025-09-08T23:03:59,121 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,121 ^ 2025-09-08T23:03:59,121 ------------------------------------------------------------ 2025-09-08T23:03:59,121 sella/internal/int_classes.pyx:900:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,121 Error compiling Cython file: 2025-09-08T23:03:59,122 ------------------------------------------------------------ 2025-09-08T23:03:59,122 ... 2025-09-08T23:03:59,122 if self.calc_res: 2025-09-08T23:03:59,122 return np.asarray(self.res) 2025-09-08T23:03:59,122 cdef int i, n 2025-09-08T23:03:59,122 with nogil: 2025-09-08T23:03:59,122 for i in range(self.ninternal): 2025-09-08T23:03:59,122 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,122 ^ 2025-09-08T23:03:59,122 ------------------------------------------------------------ 2025-09-08T23:03:59,122 sella/internal/int_classes.pyx:900:41: Operation not allowed without gil 2025-09-08T23:03:59,123 Error compiling Cython file: 2025-09-08T23:03:59,123 ------------------------------------------------------------ 2025-09-08T23:03:59,123 ... 2025-09-08T23:03:59,123 if self.calc_res: 2025-09-08T23:03:59,123 return np.asarray(self.res) 2025-09-08T23:03:59,123 cdef int i, n 2025-09-08T23:03:59,123 with nogil: 2025-09-08T23:03:59,123 for i in range(self.ninternal): 2025-09-08T23:03:59,123 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,123 ^ 2025-09-08T23:03:59,123 ------------------------------------------------------------ 2025-09-08T23:03:59,124 sella/internal/int_classes.pyx:900:37: Indexing Python object not allowed without gil 2025-09-08T23:03:59,124 Error compiling Cython file: 2025-09-08T23:03:59,124 ------------------------------------------------------------ 2025-09-08T23:03:59,124 ... 2025-09-08T23:03:59,124 if self.calc_res: 2025-09-08T23:03:59,124 return np.asarray(self.res) 2025-09-08T23:03:59,124 cdef int i, n 2025-09-08T23:03:59,124 with nogil: 2025-09-08T23:03:59,124 for i in range(self.ninternal): 2025-09-08T23:03:59,124 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,125 ^ 2025-09-08T23:03:59,125 ------------------------------------------------------------ 2025-09-08T23:03:59,125 sella/internal/int_classes.pyx:900:34: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,125 Error compiling Cython file: 2025-09-08T23:03:59,125 ------------------------------------------------------------ 2025-09-08T23:03:59,125 ... 2025-09-08T23:03:59,125 if self.calc_res: 2025-09-08T23:03:59,125 return np.asarray(self.res) 2025-09-08T23:03:59,125 cdef int i, n 2025-09-08T23:03:59,125 with nogil: 2025-09-08T23:03:59,126 for i in range(self.ninternal): 2025-09-08T23:03:59,126 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,126 ^ 2025-09-08T23:03:59,126 ------------------------------------------------------------ 2025-09-08T23:03:59,126 sella/internal/int_classes.pyx:900:54: Indexing Python object not allowed without gil 2025-09-08T23:03:59,126 Error compiling Cython file: 2025-09-08T23:03:59,126 ------------------------------------------------------------ 2025-09-08T23:03:59,126 ... 2025-09-08T23:03:59,126 if self.calc_res: 2025-09-08T23:03:59,126 return np.asarray(self.res) 2025-09-08T23:03:59,127 cdef int i, n 2025-09-08T23:03:59,127 with nogil: 2025-09-08T23:03:59,127 for i in range(self.ninternal): 2025-09-08T23:03:59,127 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,127 ^ 2025-09-08T23:03:59,127 ------------------------------------------------------------ 2025-09-08T23:03:59,127 sella/internal/int_classes.pyx:900:47: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,127 Error compiling Cython file: 2025-09-08T23:03:59,127 ------------------------------------------------------------ 2025-09-08T23:03:59,127 ... 2025-09-08T23:03:59,127 cdef int i, n 2025-09-08T23:03:59,128 with nogil: 2025-09-08T23:03:59,128 for i in range(self.ninternal): 2025-09-08T23:03:59,128 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,128 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,128 ^ 2025-09-08T23:03:59,128 ------------------------------------------------------------ 2025-09-08T23:03:59,128 sella/internal/int_classes.pyx:902:41: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,128 Error compiling Cython file: 2025-09-08T23:03:59,128 ------------------------------------------------------------ 2025-09-08T23:03:59,129 ... 2025-09-08T23:03:59,129 cdef int i, n 2025-09-08T23:03:59,129 with nogil: 2025-09-08T23:03:59,129 for i in range(self.ninternal): 2025-09-08T23:03:59,129 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,129 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,129 ^ 2025-09-08T23:03:59,129 ------------------------------------------------------------ 2025-09-08T23:03:59,129 sella/internal/int_classes.pyx:902:41: Operation not allowed without gil 2025-09-08T23:03:59,129 Error compiling Cython file: 2025-09-08T23:03:59,130 ------------------------------------------------------------ 2025-09-08T23:03:59,130 ... 2025-09-08T23:03:59,130 cdef int i, n 2025-09-08T23:03:59,130 with nogil: 2025-09-08T23:03:59,130 for i in range(self.ninternal): 2025-09-08T23:03:59,130 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,130 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,130 ^ 2025-09-08T23:03:59,130 ------------------------------------------------------------ 2025-09-08T23:03:59,130 sella/internal/int_classes.pyx:902:27: Operation not allowed without gil 2025-09-08T23:03:59,131 Error compiling Cython file: 2025-09-08T23:03:59,131 ------------------------------------------------------------ 2025-09-08T23:03:59,131 ... 2025-09-08T23:03:59,131 cdef int i, n 2025-09-08T23:03:59,131 with nogil: 2025-09-08T23:03:59,131 for i in range(self.ninternal): 2025-09-08T23:03:59,131 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,131 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,131 ^ 2025-09-08T23:03:59,131 ------------------------------------------------------------ 2025-09-08T23:03:59,132 sella/internal/int_classes.pyx:902:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,132 Error compiling Cython file: 2025-09-08T23:03:59,132 ------------------------------------------------------------ 2025-09-08T23:03:59,132 ... 2025-09-08T23:03:59,132 cdef int i, n 2025-09-08T23:03:59,132 with nogil: 2025-09-08T23:03:59,132 for i in range(self.ninternal): 2025-09-08T23:03:59,132 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,132 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,133 ^ 2025-09-08T23:03:59,133 ------------------------------------------------------------ 2025-09-08T23:03:59,133 sella/internal/int_classes.pyx:902:33: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,133 Error compiling Cython file: 2025-09-08T23:03:59,133 ------------------------------------------------------------ 2025-09-08T23:03:59,133 ... 2025-09-08T23:03:59,133 cdef int i, n 2025-09-08T23:03:59,133 with nogil: 2025-09-08T23:03:59,133 for i in range(self.ninternal): 2025-09-08T23:03:59,133 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,134 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,134 ^ 2025-09-08T23:03:59,134 ------------------------------------------------------------ 2025-09-08T23:03:59,134 sella/internal/int_classes.pyx:902:47: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,134 Error compiling Cython file: 2025-09-08T23:03:59,134 ------------------------------------------------------------ 2025-09-08T23:03:59,134 ... 2025-09-08T23:03:59,134 for i in range(self.ninternal): 2025-09-08T23:03:59,134 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,135 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,135 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,135 for i in range(self.ndihedrals): 2025-09-08T23:03:59,135 ^ 2025-09-08T23:03:59,135 ------------------------------------------------------------ 2025-09-08T23:03:59,135 sella/internal/int_classes.pyx:904:31: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,135 Error compiling Cython file: 2025-09-08T23:03:59,135 ------------------------------------------------------------ 2025-09-08T23:03:59,135 ... 2025-09-08T23:03:59,135 for i in range(self.ninternal): 2025-09-08T23:03:59,136 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,136 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,136 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,136 for i in range(self.ndihedrals): 2025-09-08T23:03:59,136 ^ 2025-09-08T23:03:59,136 ------------------------------------------------------------ 2025-09-08T23:03:59,136 sella/internal/int_classes.pyx:904:31: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,136 Error compiling Cython file: 2025-09-08T23:03:59,136 ------------------------------------------------------------ 2025-09-08T23:03:59,136 ... 2025-09-08T23:03:59,137 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,137 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,137 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,137 for i in range(self.ndihedrals): 2025-09-08T23:03:59,137 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,137 ^ 2025-09-08T23:03:59,137 ------------------------------------------------------------ 2025-09-08T23:03:59,137 sella/internal/int_classes.pyx:905:24: Indexing Python object not allowed without gil 2025-09-08T23:03:59,137 Error compiling Cython file: 2025-09-08T23:03:59,138 ------------------------------------------------------------ 2025-09-08T23:03:59,138 ... 2025-09-08T23:03:59,138 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,138 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,138 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,138 for i in range(self.ndihedrals): 2025-09-08T23:03:59,138 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,138 ^ 2025-09-08T23:03:59,138 ------------------------------------------------------------ 2025-09-08T23:03:59,138 sella/internal/int_classes.pyx:905:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,139 Error compiling Cython file: 2025-09-08T23:03:59,139 ------------------------------------------------------------ 2025-09-08T23:03:59,139 ... 2025-09-08T23:03:59,139 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,139 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,139 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,139 for i in range(self.ndihedrals): 2025-09-08T23:03:59,139 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,139 ^ 2025-09-08T23:03:59,139 ------------------------------------------------------------ 2025-09-08T23:03:59,140 sella/internal/int_classes.pyx:905:57: Operation not allowed without gil 2025-09-08T23:03:59,140 Error compiling Cython file: 2025-09-08T23:03:59,140 ------------------------------------------------------------ 2025-09-08T23:03:59,140 ... 2025-09-08T23:03:59,140 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,140 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,140 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,140 for i in range(self.ndihedrals): 2025-09-08T23:03:59,140 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,140 ^ 2025-09-08T23:03:59,141 ------------------------------------------------------------ 2025-09-08T23:03:59,141 sella/internal/int_classes.pyx:905:38: Operation not allowed without gil 2025-09-08T23:03:59,141 Error compiling Cython file: 2025-09-08T23:03:59,141 ------------------------------------------------------------ 2025-09-08T23:03:59,141 ... 2025-09-08T23:03:59,141 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,141 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,141 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,141 for i in range(self.ndihedrals): 2025-09-08T23:03:59,141 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,142 ^ 2025-09-08T23:03:59,142 ------------------------------------------------------------ 2025-09-08T23:03:59,142 sella/internal/int_classes.pyx:905:35: Converting to Python object not allowed without gil 2025-09-08T23:03:59,142 Error compiling Cython file: 2025-09-08T23:03:59,142 ------------------------------------------------------------ 2025-09-08T23:03:59,142 ... 2025-09-08T23:03:59,142 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,142 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,143 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,143 for i in range(self.ndihedrals): 2025-09-08T23:03:59,143 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,143 ^ 2025-09-08T23:03:59,143 ------------------------------------------------------------ 2025-09-08T23:03:59,143 sella/internal/int_classes.pyx:905:48: Indexing Python object not allowed without gil 2025-09-08T23:03:59,143 Error compiling Cython file: 2025-09-08T23:03:59,143 ------------------------------------------------------------ 2025-09-08T23:03:59,143 ... 2025-09-08T23:03:59,143 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,144 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,144 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,144 for i in range(self.ndihedrals): 2025-09-08T23:03:59,144 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,144 ^ 2025-09-08T23:03:59,144 ------------------------------------------------------------ 2025-09-08T23:03:59,144 sella/internal/int_classes.pyx:905:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,144 Error compiling Cython file: 2025-09-08T23:03:59,144 ------------------------------------------------------------ 2025-09-08T23:03:59,145 ... 2025-09-08T23:03:59,145 self.res[i] = self.q1[i] - self.target[i] 2025-09-08T23:03:59,145 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,145 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,145 for i in range(self.ndihedrals): 2025-09-08T23:03:59,145 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,145 ^ 2025-09-08T23:03:59,145 ------------------------------------------------------------ 2025-09-08T23:03:59,145 sella/internal/int_classes.pyx:905:62: Converting to Python object not allowed without gil 2025-09-08T23:03:59,146 Error compiling Cython file: 2025-09-08T23:03:59,146 ------------------------------------------------------------ 2025-09-08T23:03:59,146 ... 2025-09-08T23:03:59,146 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,146 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,146 for i in range(self.ndihedrals): 2025-09-08T23:03:59,146 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,146 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,146 ^ 2025-09-08T23:03:59,146 ------------------------------------------------------------ 2025-09-08T23:03:59,146 sella/internal/int_classes.pyx:906:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,147 Error compiling Cython file: 2025-09-08T23:03:59,147 ------------------------------------------------------------ 2025-09-08T23:03:59,147 ... 2025-09-08T23:03:59,147 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,147 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,147 for i in range(self.ndihedrals): 2025-09-08T23:03:59,147 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,147 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,147 ^ 2025-09-08T23:03:59,147 ------------------------------------------------------------ 2025-09-08T23:03:59,148 sella/internal/int_classes.pyx:906:24: Indexing Python object not allowed without gil 2025-09-08T23:03:59,148 Error compiling Cython file: 2025-09-08T23:03:59,148 ------------------------------------------------------------ 2025-09-08T23:03:59,148 ... 2025-09-08T23:03:59,148 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,148 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,148 for i in range(self.ndihedrals): 2025-09-08T23:03:59,148 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,148 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,148 ^ 2025-09-08T23:03:59,149 ------------------------------------------------------------ 2025-09-08T23:03:59,149 sella/internal/int_classes.pyx:906:20: Operation not allowed without gil 2025-09-08T23:03:59,149 Error compiling Cython file: 2025-09-08T23:03:59,149 ------------------------------------------------------------ 2025-09-08T23:03:59,149 ... 2025-09-08T23:03:59,149 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,149 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,149 for i in range(self.ndihedrals): 2025-09-08T23:03:59,149 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,150 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,150 ^ 2025-09-08T23:03:59,150 ------------------------------------------------------------ 2025-09-08T23:03:59,150 sella/internal/int_classes.pyx:906:24: Operation not allowed without gil 2025-09-08T23:03:59,150 Error compiling Cython file: 2025-09-08T23:03:59,150 ------------------------------------------------------------ 2025-09-08T23:03:59,150 ... 2025-09-08T23:03:59,150 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,150 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,151 for i in range(self.ndihedrals): 2025-09-08T23:03:59,151 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,151 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,151 ^ 2025-09-08T23:03:59,151 ------------------------------------------------------------ 2025-09-08T23:03:59,151 sella/internal/int_classes.pyx:906:24: Indexing Python object not allowed without gil 2025-09-08T23:03:59,151 Error compiling Cython file: 2025-09-08T23:03:59,151 ------------------------------------------------------------ 2025-09-08T23:03:59,151 ... 2025-09-08T23:03:59,151 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,152 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,152 for i in range(self.ndihedrals): 2025-09-08T23:03:59,152 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,152 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,152 ^ 2025-09-08T23:03:59,152 ------------------------------------------------------------ 2025-09-08T23:03:59,152 sella/internal/int_classes.pyx:906:20: Operation not allowed without gil 2025-09-08T23:03:59,152 Error compiling Cython file: 2025-09-08T23:03:59,152 ------------------------------------------------------------ 2025-09-08T23:03:59,153 ... 2025-09-08T23:03:59,153 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,153 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,153 for i in range(self.ndihedrals): 2025-09-08T23:03:59,153 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,153 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,153 ^ 2025-09-08T23:03:59,153 ------------------------------------------------------------ 2025-09-08T23:03:59,153 sella/internal/int_classes.pyx:906:43: Converting to Python object not allowed without gil 2025-09-08T23:03:59,153 Error compiling Cython file: 2025-09-08T23:03:59,154 ------------------------------------------------------------ 2025-09-08T23:03:59,154 ... 2025-09-08T23:03:59,154 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,154 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,154 for i in range(self.ndihedrals): 2025-09-08T23:03:59,154 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,154 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,154 ^ 2025-09-08T23:03:59,154 ------------------------------------------------------------ 2025-09-08T23:03:59,154 sella/internal/int_classes.pyx:906:56: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,155 Error compiling Cython file: 2025-09-08T23:03:59,155 ------------------------------------------------------------ 2025-09-08T23:03:59,155 ... 2025-09-08T23:03:59,155 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,155 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,155 for i in range(self.ndihedrals): 2025-09-08T23:03:59,155 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,155 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,155 ^ 2025-09-08T23:03:59,155 ------------------------------------------------------------ 2025-09-08T23:03:59,156 sella/internal/int_classes.pyx:906:56: Indexing Python object not allowed without gil 2025-09-08T23:03:59,156 Error compiling Cython file: 2025-09-08T23:03:59,156 ------------------------------------------------------------ 2025-09-08T23:03:59,156 ... 2025-09-08T23:03:59,156 n = self.ncart + self.nbonds + self.nangles 2025-09-08T23:03:59,156 # Dihedrals are periodic on the range -pi to pi 2025-09-08T23:03:59,156 for i in range(self.ndihedrals): 2025-09-08T23:03:59,156 self.res[n + i] = (pi + self.res[n + i]) % (2 * pi) #- pi 2025-09-08T23:03:59,156 self.res[n + i] -= copysign(pi, self.res[n + i]) 2025-09-08T23:03:59,156 ^ 2025-09-08T23:03:59,157 ------------------------------------------------------------ 2025-09-08T23:03:59,157 sella/internal/int_classes.pyx:906:52: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,157 Error compiling Cython file: 2025-09-08T23:03:59,157 ------------------------------------------------------------ 2025-09-08T23:03:59,157 ... 2025-09-08T23:03:59,157 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,157 dtype=np.float64) 2025-09-08T23:03:59,157 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,157 with nogil: 2025-09-08T23:03:59,157 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,158 ^ 2025-09-08T23:03:59,158 ------------------------------------------------------------ 2025-09-08T23:03:59,158 sella/internal/int_classes.pyx:1000:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,158 Error compiling Cython file: 2025-09-08T23:03:59,158 ------------------------------------------------------------ 2025-09-08T23:03:59,158 ... 2025-09-08T23:03:59,158 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,158 dtype=np.float64) 2025-09-08T23:03:59,159 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,159 with nogil: 2025-09-08T23:03:59,159 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,159 ^ 2025-09-08T23:03:59,159 ------------------------------------------------------------ 2025-09-08T23:03:59,159 sella/internal/int_classes.pyx:1000:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,159 Error compiling Cython file: 2025-09-08T23:03:59,159 ------------------------------------------------------------ 2025-09-08T23:03:59,159 ... 2025-09-08T23:03:59,160 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,160 dtype=np.float64) 2025-09-08T23:03:59,160 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,160 with nogil: 2025-09-08T23:03:59,160 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,160 ^ 2025-09-08T23:03:59,160 ------------------------------------------------------------ 2025-09-08T23:03:59,160 sella/internal/int_classes.pyx:1000:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,160 Error compiling Cython file: 2025-09-08T23:03:59,160 ------------------------------------------------------------ 2025-09-08T23:03:59,160 ... 2025-09-08T23:03:59,161 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,161 dtype=np.float64) 2025-09-08T23:03:59,161 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,161 with nogil: 2025-09-08T23:03:59,161 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,161 ^ 2025-09-08T23:03:59,161 ------------------------------------------------------------ 2025-09-08T23:03:59,161 sella/internal/int_classes.pyx:1000:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,161 Error compiling Cython file: 2025-09-08T23:03:59,162 ------------------------------------------------------------ 2025-09-08T23:03:59,162 ... 2025-09-08T23:03:59,162 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,162 dtype=np.float64) 2025-09-08T23:03:59,162 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,162 with nogil: 2025-09-08T23:03:59,162 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,162 m += self.nbonds 2025-09-08T23:03:59,162 ^ 2025-09-08T23:03:59,162 ------------------------------------------------------------ 2025-09-08T23:03:59,162 sella/internal/int_classes.pyx:1001:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,163 Error compiling Cython file: 2025-09-08T23:03:59,163 ------------------------------------------------------------ 2025-09-08T23:03:59,163 ... 2025-09-08T23:03:59,163 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,163 dtype=np.float64) 2025-09-08T23:03:59,163 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,163 with nogil: 2025-09-08T23:03:59,163 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,163 m += self.nbonds 2025-09-08T23:03:59,163 ^ 2025-09-08T23:03:59,163 ------------------------------------------------------------ 2025-09-08T23:03:59,164 sella/internal/int_classes.pyx:1001:12: Operation not allowed without gil 2025-09-08T23:03:59,164 Error compiling Cython file: 2025-09-08T23:03:59,164 ------------------------------------------------------------ 2025-09-08T23:03:59,164 ... 2025-09-08T23:03:59,164 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,164 dtype=np.float64) 2025-09-08T23:03:59,164 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,164 with nogil: 2025-09-08T23:03:59,164 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,164 m += self.nbonds 2025-09-08T23:03:59,164 ^ 2025-09-08T23:03:59,165 ------------------------------------------------------------ 2025-09-08T23:03:59,165 sella/internal/int_classes.pyx:1001:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,165 Error compiling Cython file: 2025-09-08T23:03:59,165 ------------------------------------------------------------ 2025-09-08T23:03:59,165 ... 2025-09-08T23:03:59,165 result_np = np.zeros((self.natoms, 3, self.natoms, 3), 2025-09-08T23:03:59,165 dtype=np.float64) 2025-09-08T23:03:59,165 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,165 with nogil: 2025-09-08T23:03:59,165 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,166 m += self.nbonds 2025-09-08T23:03:59,166 ^ 2025-09-08T23:03:59,166 ------------------------------------------------------------ 2025-09-08T23:03:59,166 sella/internal/int_classes.pyx:1001:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,166 Error compiling Cython file: 2025-09-08T23:03:59,166 ------------------------------------------------------------ 2025-09-08T23:03:59,166 ... 2025-09-08T23:03:59,166 dtype=np.float64) 2025-09-08T23:03:59,166 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,166 with nogil: 2025-09-08T23:03:59,166 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,167 m += self.nbonds 2025-09-08T23:03:59,167 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,167 ^ 2025-09-08T23:03:59,167 ------------------------------------------------------------ 2025-09-08T23:03:59,167 sella/internal/int_classes.pyx:1002:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,167 Error compiling Cython file: 2025-09-08T23:03:59,167 ------------------------------------------------------------ 2025-09-08T23:03:59,167 ... 2025-09-08T23:03:59,167 dtype=np.float64) 2025-09-08T23:03:59,167 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,168 with nogil: 2025-09-08T23:03:59,168 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,168 m += self.nbonds 2025-09-08T23:03:59,168 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,168 ^ 2025-09-08T23:03:59,168 ------------------------------------------------------------ 2025-09-08T23:03:59,168 sella/internal/int_classes.pyx:1002:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,168 Error compiling Cython file: 2025-09-08T23:03:59,168 ------------------------------------------------------------ 2025-09-08T23:03:59,168 ... 2025-09-08T23:03:59,168 dtype=np.float64) 2025-09-08T23:03:59,169 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,169 with nogil: 2025-09-08T23:03:59,169 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,169 m += self.nbonds 2025-09-08T23:03:59,169 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,169 ^ 2025-09-08T23:03:59,169 ------------------------------------------------------------ 2025-09-08T23:03:59,169 sella/internal/int_classes.pyx:1002:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,169 Error compiling Cython file: 2025-09-08T23:03:59,169 ------------------------------------------------------------ 2025-09-08T23:03:59,170 ... 2025-09-08T23:03:59,170 dtype=np.float64) 2025-09-08T23:03:59,170 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,170 with nogil: 2025-09-08T23:03:59,170 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,170 m += self.nbonds 2025-09-08T23:03:59,170 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,170 ^ 2025-09-08T23:03:59,170 ------------------------------------------------------------ 2025-09-08T23:03:59,170 sella/internal/int_classes.pyx:1002:58: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,171 Error compiling Cython file: 2025-09-08T23:03:59,171 ------------------------------------------------------------ 2025-09-08T23:03:59,171 ... 2025-09-08T23:03:59,171 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,171 with nogil: 2025-09-08T23:03:59,171 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,171 m += self.nbonds 2025-09-08T23:03:59,171 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,171 m += self.nangles 2025-09-08T23:03:59,171 ^ 2025-09-08T23:03:59,171 ------------------------------------------------------------ 2025-09-08T23:03:59,171 sella/internal/int_classes.pyx:1003:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,172 Error compiling Cython file: 2025-09-08T23:03:59,172 ------------------------------------------------------------ 2025-09-08T23:03:59,172 ... 2025-09-08T23:03:59,172 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,172 with nogil: 2025-09-08T23:03:59,172 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,172 m += self.nbonds 2025-09-08T23:03:59,172 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,172 m += self.nangles 2025-09-08T23:03:59,172 ^ 2025-09-08T23:03:59,172 ------------------------------------------------------------ 2025-09-08T23:03:59,173 sella/internal/int_classes.pyx:1003:12: Operation not allowed without gil 2025-09-08T23:03:59,173 Error compiling Cython file: 2025-09-08T23:03:59,173 ------------------------------------------------------------ 2025-09-08T23:03:59,173 ... 2025-09-08T23:03:59,173 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,173 with nogil: 2025-09-08T23:03:59,173 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,173 m += self.nbonds 2025-09-08T23:03:59,173 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,173 m += self.nangles 2025-09-08T23:03:59,173 ^ 2025-09-08T23:03:59,174 ------------------------------------------------------------ 2025-09-08T23:03:59,174 sella/internal/int_classes.pyx:1003:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,174 Error compiling Cython file: 2025-09-08T23:03:59,174 ------------------------------------------------------------ 2025-09-08T23:03:59,174 ... 2025-09-08T23:03:59,174 cdef double[:, :, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,174 with nogil: 2025-09-08T23:03:59,174 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,174 m += self.nbonds 2025-09-08T23:03:59,175 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,175 m += self.nangles 2025-09-08T23:03:59,175 ^ 2025-09-08T23:03:59,175 ------------------------------------------------------------ 2025-09-08T23:03:59,175 sella/internal/int_classes.pyx:1003:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,175 Error compiling Cython file: 2025-09-08T23:03:59,175 ------------------------------------------------------------ 2025-09-08T23:03:59,175 ... 2025-09-08T23:03:59,175 with nogil: 2025-09-08T23:03:59,175 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,176 m += self.nbonds 2025-09-08T23:03:59,176 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,176 m += self.nangles 2025-09-08T23:03:59,176 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,176 ^ 2025-09-08T23:03:59,176 ------------------------------------------------------------ 2025-09-08T23:03:59,176 sella/internal/int_classes.pyx:1004:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,176 Error compiling Cython file: 2025-09-08T23:03:59,176 ------------------------------------------------------------ 2025-09-08T23:03:59,176 ... 2025-09-08T23:03:59,177 with nogil: 2025-09-08T23:03:59,177 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,177 m += self.nbonds 2025-09-08T23:03:59,177 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,177 m += self.nangles 2025-09-08T23:03:59,177 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,177 ^ 2025-09-08T23:03:59,177 ------------------------------------------------------------ 2025-09-08T23:03:59,177 sella/internal/int_classes.pyx:1004:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,177 Error compiling Cython file: 2025-09-08T23:03:59,178 ------------------------------------------------------------ 2025-09-08T23:03:59,178 ... 2025-09-08T23:03:59,178 with nogil: 2025-09-08T23:03:59,178 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,178 m += self.nbonds 2025-09-08T23:03:59,178 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,178 m += self.nangles 2025-09-08T23:03:59,178 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,178 ^ 2025-09-08T23:03:59,178 ------------------------------------------------------------ 2025-09-08T23:03:59,178 sella/internal/int_classes.pyx:1004:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,179 Error compiling Cython file: 2025-09-08T23:03:59,179 ------------------------------------------------------------ 2025-09-08T23:03:59,179 ... 2025-09-08T23:03:59,179 with nogil: 2025-09-08T23:03:59,179 self._ld(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,179 m += self.nbonds 2025-09-08T23:03:59,179 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,179 m += self.nangles 2025-09-08T23:03:59,179 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,179 ^ 2025-09-08T23:03:59,179 ------------------------------------------------------------ 2025-09-08T23:03:59,180 sella/internal/int_classes.pyx:1004:64: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,180 Error compiling Cython file: 2025-09-08T23:03:59,180 ------------------------------------------------------------ 2025-09-08T23:03:59,180 ... 2025-09-08T23:03:59,180 m += self.nbonds 2025-09-08T23:03:59,180 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,180 m += self.nangles 2025-09-08T23:03:59,180 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,180 v1, res) 2025-09-08T23:03:59,180 m += self.ndihedrals 2025-09-08T23:03:59,180 ^ 2025-09-08T23:03:59,181 ------------------------------------------------------------ 2025-09-08T23:03:59,181 sella/internal/int_classes.pyx:1006:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,181 Error compiling Cython file: 2025-09-08T23:03:59,181 ------------------------------------------------------------ 2025-09-08T23:03:59,181 ... 2025-09-08T23:03:59,181 m += self.nbonds 2025-09-08T23:03:59,181 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,181 m += self.nangles 2025-09-08T23:03:59,181 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,181 v1, res) 2025-09-08T23:03:59,182 m += self.ndihedrals 2025-09-08T23:03:59,182 ^ 2025-09-08T23:03:59,182 ------------------------------------------------------------ 2025-09-08T23:03:59,182 sella/internal/int_classes.pyx:1006:12: Operation not allowed without gil 2025-09-08T23:03:59,182 Error compiling Cython file: 2025-09-08T23:03:59,182 ------------------------------------------------------------ 2025-09-08T23:03:59,182 ... 2025-09-08T23:03:59,182 m += self.nbonds 2025-09-08T23:03:59,182 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,182 m += self.nangles 2025-09-08T23:03:59,183 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,183 v1, res) 2025-09-08T23:03:59,183 m += self.ndihedrals 2025-09-08T23:03:59,183 ^ 2025-09-08T23:03:59,183 ------------------------------------------------------------ 2025-09-08T23:03:59,183 sella/internal/int_classes.pyx:1006:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,183 Error compiling Cython file: 2025-09-08T23:03:59,183 ------------------------------------------------------------ 2025-09-08T23:03:59,183 ... 2025-09-08T23:03:59,183 m += self.nbonds 2025-09-08T23:03:59,184 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,184 m += self.nangles 2025-09-08T23:03:59,184 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,184 v1, res) 2025-09-08T23:03:59,184 m += self.ndihedrals 2025-09-08T23:03:59,184 ^ 2025-09-08T23:03:59,184 ------------------------------------------------------------ 2025-09-08T23:03:59,184 sella/internal/int_classes.pyx:1006:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,184 Error compiling Cython file: 2025-09-08T23:03:59,184 ------------------------------------------------------------ 2025-09-08T23:03:59,184 ... 2025-09-08T23:03:59,185 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,185 m += self.nangles 2025-09-08T23:03:59,185 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,185 v1, res) 2025-09-08T23:03:59,185 m += self.ndihedrals 2025-09-08T23:03:59,185 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,185 ^ 2025-09-08T23:03:59,185 ------------------------------------------------------------ 2025-09-08T23:03:59,185 sella/internal/int_classes.pyx:1007:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,185 Error compiling Cython file: 2025-09-08T23:03:59,186 ------------------------------------------------------------ 2025-09-08T23:03:59,186 ... 2025-09-08T23:03:59,186 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,186 m += self.nangles 2025-09-08T23:03:59,186 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,186 v1, res) 2025-09-08T23:03:59,186 m += self.ndihedrals 2025-09-08T23:03:59,186 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,186 ^ 2025-09-08T23:03:59,186 ------------------------------------------------------------ 2025-09-08T23:03:59,186 sella/internal/int_classes.pyx:1007:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,187 Error compiling Cython file: 2025-09-08T23:03:59,187 ------------------------------------------------------------ 2025-09-08T23:03:59,187 ... 2025-09-08T23:03:59,187 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,187 m += self.nangles 2025-09-08T23:03:59,187 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,187 v1, res) 2025-09-08T23:03:59,187 m += self.ndihedrals 2025-09-08T23:03:59,187 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,187 ^ 2025-09-08T23:03:59,187 ------------------------------------------------------------ 2025-09-08T23:03:59,188 sella/internal/int_classes.pyx:1007:49: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,188 Error compiling Cython file: 2025-09-08T23:03:59,188 ------------------------------------------------------------ 2025-09-08T23:03:59,188 ... 2025-09-08T23:03:59,188 self._ld(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,188 m += self.nangles 2025-09-08T23:03:59,188 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,188 v1, res) 2025-09-08T23:03:59,188 m += self.ndihedrals 2025-09-08T23:03:59,188 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,188 ^ 2025-09-08T23:03:59,189 ------------------------------------------------------------ 2025-09-08T23:03:59,189 sella/internal/int_classes.pyx:1007:66: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,189 Error compiling Cython file: 2025-09-08T23:03:59,189 ------------------------------------------------------------ 2025-09-08T23:03:59,189 ... 2025-09-08T23:03:59,189 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,189 v1, res) 2025-09-08T23:03:59,189 m += self.ndihedrals 2025-09-08T23:03:59,189 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,189 v1, res) 2025-09-08T23:03:59,189 m += self.nangle_sums 2025-09-08T23:03:59,190 ^ 2025-09-08T23:03:59,190 ------------------------------------------------------------ 2025-09-08T23:03:59,190 sella/internal/int_classes.pyx:1009:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,190 Error compiling Cython file: 2025-09-08T23:03:59,190 ------------------------------------------------------------ 2025-09-08T23:03:59,190 ... 2025-09-08T23:03:59,190 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,190 v1, res) 2025-09-08T23:03:59,190 m += self.ndihedrals 2025-09-08T23:03:59,190 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,190 v1, res) 2025-09-08T23:03:59,191 m += self.nangle_sums 2025-09-08T23:03:59,191 ^ 2025-09-08T23:03:59,191 ------------------------------------------------------------ 2025-09-08T23:03:59,191 sella/internal/int_classes.pyx:1009:12: Operation not allowed without gil 2025-09-08T23:03:59,191 Error compiling Cython file: 2025-09-08T23:03:59,191 ------------------------------------------------------------ 2025-09-08T23:03:59,191 ... 2025-09-08T23:03:59,191 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,191 v1, res) 2025-09-08T23:03:59,192 m += self.ndihedrals 2025-09-08T23:03:59,192 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,192 v1, res) 2025-09-08T23:03:59,192 m += self.nangle_sums 2025-09-08T23:03:59,192 ^ 2025-09-08T23:03:59,192 ------------------------------------------------------------ 2025-09-08T23:03:59,192 sella/internal/int_classes.pyx:1009:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,192 Error compiling Cython file: 2025-09-08T23:03:59,192 ------------------------------------------------------------ 2025-09-08T23:03:59,193 ... 2025-09-08T23:03:59,193 self._ld(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,193 v1, res) 2025-09-08T23:03:59,193 m += self.ndihedrals 2025-09-08T23:03:59,193 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,193 v1, res) 2025-09-08T23:03:59,193 m += self.nangle_sums 2025-09-08T23:03:59,193 ^ 2025-09-08T23:03:59,193 ------------------------------------------------------------ 2025-09-08T23:03:59,193 sella/internal/int_classes.pyx:1009:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,194 Error compiling Cython file: 2025-09-08T23:03:59,194 ------------------------------------------------------------ 2025-09-08T23:03:59,194 ... 2025-09-08T23:03:59,194 v1, res) 2025-09-08T23:03:59,194 m += self.ndihedrals 2025-09-08T23:03:59,194 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,194 v1, res) 2025-09-08T23:03:59,194 m += self.nangle_sums 2025-09-08T23:03:59,194 self._ld(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,194 ^ 2025-09-08T23:03:59,194 ------------------------------------------------------------ 2025-09-08T23:03:59,194 sella/internal/int_classes.pyx:1010:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,195 Error compiling Cython file: 2025-09-08T23:03:59,195 ------------------------------------------------------------ 2025-09-08T23:03:59,195 ... 2025-09-08T23:03:59,195 v1, res) 2025-09-08T23:03:59,195 m += self.ndihedrals 2025-09-08T23:03:59,195 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,195 v1, res) 2025-09-08T23:03:59,195 m += self.nangle_sums 2025-09-08T23:03:59,195 self._ld(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,195 ^ 2025-09-08T23:03:59,195 ------------------------------------------------------------ 2025-09-08T23:03:59,196 sella/internal/int_classes.pyx:1010:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,196 Error compiling Cython file: 2025-09-08T23:03:59,196 ------------------------------------------------------------ 2025-09-08T23:03:59,196 ... 2025-09-08T23:03:59,196 v1, res) 2025-09-08T23:03:59,196 m += self.ndihedrals 2025-09-08T23:03:59,196 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,196 v1, res) 2025-09-08T23:03:59,196 m += self.nangle_sums 2025-09-08T23:03:59,196 self._ld(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,197 ^ 2025-09-08T23:03:59,197 ------------------------------------------------------------ 2025-09-08T23:03:59,197 sella/internal/int_classes.pyx:1010:50: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,197 Error compiling Cython file: 2025-09-08T23:03:59,197 ------------------------------------------------------------ 2025-09-08T23:03:59,197 ... 2025-09-08T23:03:59,197 m += self.ndihedrals 2025-09-08T23:03:59,197 self._ld(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,197 v1, res) 2025-09-08T23:03:59,197 m += self.nangle_sums 2025-09-08T23:03:59,197 self._ld(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,198 self.Dangle_diffs, v1, res) 2025-09-08T23:03:59,198 ^ 2025-09-08T23:03:59,198 ------------------------------------------------------------ 2025-09-08T23:03:59,198 sella/internal/int_classes.pyx:1011:25: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,198 Error compiling Cython file: 2025-09-08T23:03:59,198 ------------------------------------------------------------ 2025-09-08T23:03:59,198 ... 2025-09-08T23:03:59,198 for a in range(nind): 2025-09-08T23:03:59,198 ai = q[n, a] 2025-09-08T23:03:59,198 for b in range(nind): 2025-09-08T23:03:59,199 bi = q[n, b] 2025-09-08T23:03:59,199 for i in range(3): 2025-09-08T23:03:59,199 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,199 ^ 2025-09-08T23:03:59,199 ------------------------------------------------------------ 2025-09-08T23:03:59,199 sella/internal/int_classes.pyx:1031:38: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,199 Error compiling Cython file: 2025-09-08T23:03:59,199 ------------------------------------------------------------ 2025-09-08T23:03:59,199 ... 2025-09-08T23:03:59,199 for a in range(nind): 2025-09-08T23:03:59,199 ai = q[n, a] 2025-09-08T23:03:59,200 for b in range(nind): 2025-09-08T23:03:59,200 bi = q[n, b] 2025-09-08T23:03:59,200 for i in range(3): 2025-09-08T23:03:59,200 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,200 ^ 2025-09-08T23:03:59,200 ------------------------------------------------------------ 2025-09-08T23:03:59,200 sella/internal/int_classes.pyx:1031:38: Calling gil-requiring function not allowed without gil 2025-09-08T23:03:59,200 Error compiling Cython file: 2025-09-08T23:03:59,200 ------------------------------------------------------------ 2025-09-08T23:03:59,200 ... 2025-09-08T23:03:59,201 for a in range(nind): 2025-09-08T23:03:59,201 ai = q[n, a] 2025-09-08T23:03:59,201 for b in range(nind): 2025-09-08T23:03:59,201 bi = q[n, b] 2025-09-08T23:03:59,201 for i in range(3): 2025-09-08T23:03:59,201 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,201 ^ 2025-09-08T23:03:59,201 ------------------------------------------------------------ 2025-09-08T23:03:59,201 sella/internal/int_classes.pyx:1031:30: Accessing Python global or builtin not allowed without gil 2025-09-08T23:03:59,201 Error compiling Cython file: 2025-09-08T23:03:59,201 ------------------------------------------------------------ 2025-09-08T23:03:59,202 ... 2025-09-08T23:03:59,202 for a in range(nind): 2025-09-08T23:03:59,202 ai = q[n, a] 2025-09-08T23:03:59,202 for b in range(nind): 2025-09-08T23:03:59,202 bi = q[n, b] 2025-09-08T23:03:59,202 for i in range(3): 2025-09-08T23:03:59,202 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,202 ^ 2025-09-08T23:03:59,202 ------------------------------------------------------------ 2025-09-08T23:03:59,202 sella/internal/int_classes.pyx:1031:38: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,203 Error compiling Cython file: 2025-09-08T23:03:59,203 ------------------------------------------------------------ 2025-09-08T23:03:59,203 ... 2025-09-08T23:03:59,203 for a in range(nind): 2025-09-08T23:03:59,203 ai = q[n, a] 2025-09-08T23:03:59,203 for b in range(nind): 2025-09-08T23:03:59,203 bi = q[n, b] 2025-09-08T23:03:59,203 for i in range(3): 2025-09-08T23:03:59,203 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,203 ^ 2025-09-08T23:03:59,203 ------------------------------------------------------------ 2025-09-08T23:03:59,204 sella/internal/int_classes.pyx:1031:40: Converting to Python object not allowed without gil 2025-09-08T23:03:59,204 Error compiling Cython file: 2025-09-08T23:03:59,204 ------------------------------------------------------------ 2025-09-08T23:03:59,204 ... 2025-09-08T23:03:59,204 for a in range(nind): 2025-09-08T23:03:59,204 ai = q[n, a] 2025-09-08T23:03:59,204 for b in range(nind): 2025-09-08T23:03:59,204 bi = q[n, b] 2025-09-08T23:03:59,204 for i in range(3): 2025-09-08T23:03:59,204 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,204 ^ 2025-09-08T23:03:59,204 ------------------------------------------------------------ 2025-09-08T23:03:59,205 sella/internal/int_classes.pyx:1031:55: Converting to Python object not allowed without gil 2025-09-08T23:03:59,205 Error compiling Cython file: 2025-09-08T23:03:59,205 ------------------------------------------------------------ 2025-09-08T23:03:59,205 ... 2025-09-08T23:03:59,205 ai = q[n, a] 2025-09-08T23:03:59,205 for b in range(nind): 2025-09-08T23:03:59,205 bi = q[n, b] 2025-09-08T23:03:59,205 for i in range(3): 2025-09-08T23:03:59,205 err = my_daxpy(v[start + n], D2[n, a, i, b], 2025-09-08T23:03:59,205 res[ai, i, bi]) 2025-09-08T23:03:59,206 ^ 2025-09-08T23:03:59,206 ------------------------------------------------------------ 2025-09-08T23:03:59,206 sella/internal/int_classes.pyx:1032:42: Converting to Python object not allowed without gil 2025-09-08T23:03:59,206 Error compiling Cython file: 2025-09-08T23:03:59,206 ------------------------------------------------------------ 2025-09-08T23:03:59,206 ... 2025-09-08T23:03:59,206 assert len(v1) == self.nx 2025-09-08T23:03:59,206 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,206 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,206 with nogil: 2025-09-08T23:03:59,207 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,207 ^ 2025-09-08T23:03:59,207 ------------------------------------------------------------ 2025-09-08T23:03:59,207 sella/internal/int_classes.pyx:1044:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,207 Error compiling Cython file: 2025-09-08T23:03:59,207 ------------------------------------------------------------ 2025-09-08T23:03:59,207 ... 2025-09-08T23:03:59,207 assert len(v1) == self.nx 2025-09-08T23:03:59,207 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,208 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,208 with nogil: 2025-09-08T23:03:59,208 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,208 ^ 2025-09-08T23:03:59,208 ------------------------------------------------------------ 2025-09-08T23:03:59,208 sella/internal/int_classes.pyx:1044:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,208 Error compiling Cython file: 2025-09-08T23:03:59,208 ------------------------------------------------------------ 2025-09-08T23:03:59,208 ... 2025-09-08T23:03:59,209 assert len(v1) == self.nx 2025-09-08T23:03:59,209 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,209 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,209 with nogil: 2025-09-08T23:03:59,209 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,209 ^ 2025-09-08T23:03:59,209 ------------------------------------------------------------ 2025-09-08T23:03:59,209 sella/internal/int_classes.pyx:1044:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,209 Error compiling Cython file: 2025-09-08T23:03:59,210 ------------------------------------------------------------ 2025-09-08T23:03:59,210 ... 2025-09-08T23:03:59,210 assert len(v1) == self.nx 2025-09-08T23:03:59,210 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,210 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,210 with nogil: 2025-09-08T23:03:59,210 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,210 ^ 2025-09-08T23:03:59,210 ------------------------------------------------------------ 2025-09-08T23:03:59,211 sella/internal/int_classes.pyx:1044:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,211 Error compiling Cython file: 2025-09-08T23:03:59,211 ------------------------------------------------------------ 2025-09-08T23:03:59,211 ... 2025-09-08T23:03:59,211 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,211 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,211 with nogil: 2025-09-08T23:03:59,211 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,211 m += self.nbonds 2025-09-08T23:03:59,211 ^ 2025-09-08T23:03:59,212 ------------------------------------------------------------ 2025-09-08T23:03:59,212 sella/internal/int_classes.pyx:1045:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,212 Error compiling Cython file: 2025-09-08T23:03:59,212 ------------------------------------------------------------ 2025-09-08T23:03:59,212 ... 2025-09-08T23:03:59,212 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,212 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,212 with nogil: 2025-09-08T23:03:59,213 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,213 m += self.nbonds 2025-09-08T23:03:59,213 ^ 2025-09-08T23:03:59,213 ------------------------------------------------------------ 2025-09-08T23:03:59,213 sella/internal/int_classes.pyx:1045:12: Operation not allowed without gil 2025-09-08T23:03:59,213 Error compiling Cython file: 2025-09-08T23:03:59,213 ------------------------------------------------------------ 2025-09-08T23:03:59,213 ... 2025-09-08T23:03:59,213 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,214 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,214 with nogil: 2025-09-08T23:03:59,214 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,214 m += self.nbonds 2025-09-08T23:03:59,214 ^ 2025-09-08T23:03:59,214 ------------------------------------------------------------ 2025-09-08T23:03:59,214 sella/internal/int_classes.pyx:1045:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,214 Error compiling Cython file: 2025-09-08T23:03:59,214 ------------------------------------------------------------ 2025-09-08T23:03:59,214 ... 2025-09-08T23:03:59,215 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,215 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,215 with nogil: 2025-09-08T23:03:59,215 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,215 m += self.nbonds 2025-09-08T23:03:59,215 ^ 2025-09-08T23:03:59,215 ------------------------------------------------------------ 2025-09-08T23:03:59,215 sella/internal/int_classes.pyx:1045:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,216 Error compiling Cython file: 2025-09-08T23:03:59,216 ------------------------------------------------------------ 2025-09-08T23:03:59,216 ... 2025-09-08T23:03:59,216 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,216 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,216 with nogil: 2025-09-08T23:03:59,216 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,216 m += self.nbonds 2025-09-08T23:03:59,216 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,216 ^ 2025-09-08T23:03:59,216 ------------------------------------------------------------ 2025-09-08T23:03:59,217 sella/internal/int_classes.pyx:1046:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,217 Error compiling Cython file: 2025-09-08T23:03:59,217 ------------------------------------------------------------ 2025-09-08T23:03:59,217 ... 2025-09-08T23:03:59,217 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,217 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,217 with nogil: 2025-09-08T23:03:59,218 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,218 m += self.nbonds 2025-09-08T23:03:59,218 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,218 ^ 2025-09-08T23:03:59,218 ------------------------------------------------------------ 2025-09-08T23:03:59,218 sella/internal/int_classes.pyx:1046:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,218 Error compiling Cython file: 2025-09-08T23:03:59,218 ------------------------------------------------------------ 2025-09-08T23:03:59,218 ... 2025-09-08T23:03:59,219 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,219 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,219 with nogil: 2025-09-08T23:03:59,219 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,219 m += self.nbonds 2025-09-08T23:03:59,219 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,219 ^ 2025-09-08T23:03:59,219 ------------------------------------------------------------ 2025-09-08T23:03:59,220 sella/internal/int_classes.pyx:1046:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,220 Error compiling Cython file: 2025-09-08T23:03:59,220 ------------------------------------------------------------ 2025-09-08T23:03:59,220 ... 2025-09-08T23:03:59,220 result_np = np.zeros((self.nq, self.natoms, 3), dtype=np.float64) 2025-09-08T23:03:59,220 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,220 with nogil: 2025-09-08T23:03:59,220 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,220 m += self.nbonds 2025-09-08T23:03:59,221 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,221 ^ 2025-09-08T23:03:59,221 ------------------------------------------------------------ 2025-09-08T23:03:59,221 sella/internal/int_classes.pyx:1046:58: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,221 Error compiling Cython file: 2025-09-08T23:03:59,221 ------------------------------------------------------------ 2025-09-08T23:03:59,221 ... 2025-09-08T23:03:59,221 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,222 with nogil: 2025-09-08T23:03:59,222 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,222 m += self.nbonds 2025-09-08T23:03:59,222 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,222 m += self.nangles 2025-09-08T23:03:59,222 ^ 2025-09-08T23:03:59,222 ------------------------------------------------------------ 2025-09-08T23:03:59,222 sella/internal/int_classes.pyx:1047:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,223 Error compiling Cython file: 2025-09-08T23:03:59,223 ------------------------------------------------------------ 2025-09-08T23:03:59,223 ... 2025-09-08T23:03:59,223 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,223 with nogil: 2025-09-08T23:03:59,223 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,223 m += self.nbonds 2025-09-08T23:03:59,223 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,223 m += self.nangles 2025-09-08T23:03:59,224 ^ 2025-09-08T23:03:59,224 ------------------------------------------------------------ 2025-09-08T23:03:59,224 sella/internal/int_classes.pyx:1047:12: Operation not allowed without gil 2025-09-08T23:03:59,224 Error compiling Cython file: 2025-09-08T23:03:59,224 ------------------------------------------------------------ 2025-09-08T23:03:59,224 ... 2025-09-08T23:03:59,224 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,225 with nogil: 2025-09-08T23:03:59,225 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,225 m += self.nbonds 2025-09-08T23:03:59,225 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,225 m += self.nangles 2025-09-08T23:03:59,225 ^ 2025-09-08T23:03:59,225 ------------------------------------------------------------ 2025-09-08T23:03:59,225 sella/internal/int_classes.pyx:1047:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,226 Error compiling Cython file: 2025-09-08T23:03:59,226 ------------------------------------------------------------ 2025-09-08T23:03:59,226 ... 2025-09-08T23:03:59,226 cdef double[:, :, :] res = memoryview(result_np) 2025-09-08T23:03:59,226 with nogil: 2025-09-08T23:03:59,226 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,226 m += self.nbonds 2025-09-08T23:03:59,226 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,226 m += self.nangles 2025-09-08T23:03:59,227 ^ 2025-09-08T23:03:59,227 ------------------------------------------------------------ 2025-09-08T23:03:59,227 sella/internal/int_classes.pyx:1047:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,227 Error compiling Cython file: 2025-09-08T23:03:59,227 ------------------------------------------------------------ 2025-09-08T23:03:59,227 ... 2025-09-08T23:03:59,227 with nogil: 2025-09-08T23:03:59,227 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,228 m += self.nbonds 2025-09-08T23:03:59,228 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,228 m += self.nangles 2025-09-08T23:03:59,228 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,228 ^ 2025-09-08T23:03:59,228 ------------------------------------------------------------ 2025-09-08T23:03:59,228 sella/internal/int_classes.pyx:1048:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,229 Error compiling Cython file: 2025-09-08T23:03:59,229 ------------------------------------------------------------ 2025-09-08T23:03:59,229 ... 2025-09-08T23:03:59,229 with nogil: 2025-09-08T23:03:59,229 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,229 m += self.nbonds 2025-09-08T23:03:59,229 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,229 m += self.nangles 2025-09-08T23:03:59,230 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,230 ^ 2025-09-08T23:03:59,230 ------------------------------------------------------------ 2025-09-08T23:03:59,230 sella/internal/int_classes.pyx:1048:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,230 Error compiling Cython file: 2025-09-08T23:03:59,230 ------------------------------------------------------------ 2025-09-08T23:03:59,230 ... 2025-09-08T23:03:59,230 with nogil: 2025-09-08T23:03:59,231 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,231 m += self.nbonds 2025-09-08T23:03:59,231 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,231 m += self.nangles 2025-09-08T23:03:59,231 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,231 ^ 2025-09-08T23:03:59,231 ------------------------------------------------------------ 2025-09-08T23:03:59,231 sella/internal/int_classes.pyx:1048:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,231 Error compiling Cython file: 2025-09-08T23:03:59,231 ------------------------------------------------------------ 2025-09-08T23:03:59,232 ... 2025-09-08T23:03:59,232 with nogil: 2025-09-08T23:03:59,232 self._rd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, res) 2025-09-08T23:03:59,232 m += self.nbonds 2025-09-08T23:03:59,232 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,232 m += self.nangles 2025-09-08T23:03:59,232 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,232 ^ 2025-09-08T23:03:59,232 ------------------------------------------------------------ 2025-09-08T23:03:59,232 sella/internal/int_classes.pyx:1048:64: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,233 Error compiling Cython file: 2025-09-08T23:03:59,233 ------------------------------------------------------------ 2025-09-08T23:03:59,233 ... 2025-09-08T23:03:59,233 m += self.nbonds 2025-09-08T23:03:59,233 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,233 m += self.nangles 2025-09-08T23:03:59,233 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,233 v1, res) 2025-09-08T23:03:59,233 m += self.ndihedrals 2025-09-08T23:03:59,233 ^ 2025-09-08T23:03:59,234 ------------------------------------------------------------ 2025-09-08T23:03:59,234 sella/internal/int_classes.pyx:1050:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,234 Error compiling Cython file: 2025-09-08T23:03:59,234 ------------------------------------------------------------ 2025-09-08T23:03:59,234 ... 2025-09-08T23:03:59,234 m += self.nbonds 2025-09-08T23:03:59,234 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,234 m += self.nangles 2025-09-08T23:03:59,234 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,234 v1, res) 2025-09-08T23:03:59,235 m += self.ndihedrals 2025-09-08T23:03:59,235 ^ 2025-09-08T23:03:59,235 ------------------------------------------------------------ 2025-09-08T23:03:59,235 sella/internal/int_classes.pyx:1050:12: Operation not allowed without gil 2025-09-08T23:03:59,235 Error compiling Cython file: 2025-09-08T23:03:59,235 ------------------------------------------------------------ 2025-09-08T23:03:59,235 ... 2025-09-08T23:03:59,235 m += self.nbonds 2025-09-08T23:03:59,235 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,236 m += self.nangles 2025-09-08T23:03:59,236 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,236 v1, res) 2025-09-08T23:03:59,236 m += self.ndihedrals 2025-09-08T23:03:59,236 ^ 2025-09-08T23:03:59,236 ------------------------------------------------------------ 2025-09-08T23:03:59,236 sella/internal/int_classes.pyx:1050:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,236 Error compiling Cython file: 2025-09-08T23:03:59,236 ------------------------------------------------------------ 2025-09-08T23:03:59,237 ... 2025-09-08T23:03:59,237 m += self.nbonds 2025-09-08T23:03:59,237 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,237 m += self.nangles 2025-09-08T23:03:59,237 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,237 v1, res) 2025-09-08T23:03:59,237 m += self.ndihedrals 2025-09-08T23:03:59,237 ^ 2025-09-08T23:03:59,237 ------------------------------------------------------------ 2025-09-08T23:03:59,237 sella/internal/int_classes.pyx:1050:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,238 Error compiling Cython file: 2025-09-08T23:03:59,238 ------------------------------------------------------------ 2025-09-08T23:03:59,238 ... 2025-09-08T23:03:59,238 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,238 m += self.nangles 2025-09-08T23:03:59,238 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,238 v1, res) 2025-09-08T23:03:59,238 m += self.ndihedrals 2025-09-08T23:03:59,238 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,238 ^ 2025-09-08T23:03:59,238 ------------------------------------------------------------ 2025-09-08T23:03:59,239 sella/internal/int_classes.pyx:1051:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,239 Error compiling Cython file: 2025-09-08T23:03:59,239 ------------------------------------------------------------ 2025-09-08T23:03:59,239 ... 2025-09-08T23:03:59,239 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,239 m += self.nangles 2025-09-08T23:03:59,239 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,239 v1, res) 2025-09-08T23:03:59,239 m += self.ndihedrals 2025-09-08T23:03:59,239 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,239 ^ 2025-09-08T23:03:59,240 ------------------------------------------------------------ 2025-09-08T23:03:59,240 sella/internal/int_classes.pyx:1051:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,240 Error compiling Cython file: 2025-09-08T23:03:59,240 ------------------------------------------------------------ 2025-09-08T23:03:59,240 ... 2025-09-08T23:03:59,240 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,240 m += self.nangles 2025-09-08T23:03:59,240 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,240 v1, res) 2025-09-08T23:03:59,241 m += self.ndihedrals 2025-09-08T23:03:59,241 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,241 ^ 2025-09-08T23:03:59,241 ------------------------------------------------------------ 2025-09-08T23:03:59,241 sella/internal/int_classes.pyx:1051:49: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,241 Error compiling Cython file: 2025-09-08T23:03:59,241 ------------------------------------------------------------ 2025-09-08T23:03:59,241 ... 2025-09-08T23:03:59,241 self._rd(m, self.nangles, 3, self.angles, self.Dangles, v1, res) 2025-09-08T23:03:59,241 m += self.nangles 2025-09-08T23:03:59,242 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,242 v1, res) 2025-09-08T23:03:59,242 m += self.ndihedrals 2025-09-08T23:03:59,242 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,242 ^ 2025-09-08T23:03:59,242 ------------------------------------------------------------ 2025-09-08T23:03:59,242 sella/internal/int_classes.pyx:1051:66: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,242 Error compiling Cython file: 2025-09-08T23:03:59,242 ------------------------------------------------------------ 2025-09-08T23:03:59,243 ... 2025-09-08T23:03:59,243 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,243 v1, res) 2025-09-08T23:03:59,243 m += self.ndihedrals 2025-09-08T23:03:59,243 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,243 v1, res) 2025-09-08T23:03:59,243 m += self.nangle_sums 2025-09-08T23:03:59,243 ^ 2025-09-08T23:03:59,243 ------------------------------------------------------------ 2025-09-08T23:03:59,243 sella/internal/int_classes.pyx:1053:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,244 Error compiling Cython file: 2025-09-08T23:03:59,244 ------------------------------------------------------------ 2025-09-08T23:03:59,244 ... 2025-09-08T23:03:59,244 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,244 v1, res) 2025-09-08T23:03:59,244 m += self.ndihedrals 2025-09-08T23:03:59,244 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,244 v1, res) 2025-09-08T23:03:59,244 m += self.nangle_sums 2025-09-08T23:03:59,244 ^ 2025-09-08T23:03:59,245 ------------------------------------------------------------ 2025-09-08T23:03:59,245 sella/internal/int_classes.pyx:1053:12: Operation not allowed without gil 2025-09-08T23:03:59,245 Error compiling Cython file: 2025-09-08T23:03:59,245 ------------------------------------------------------------ 2025-09-08T23:03:59,245 ... 2025-09-08T23:03:59,245 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,245 v1, res) 2025-09-08T23:03:59,245 m += self.ndihedrals 2025-09-08T23:03:59,245 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,246 v1, res) 2025-09-08T23:03:59,246 m += self.nangle_sums 2025-09-08T23:03:59,246 ^ 2025-09-08T23:03:59,246 ------------------------------------------------------------ 2025-09-08T23:03:59,246 sella/internal/int_classes.pyx:1053:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,246 Error compiling Cython file: 2025-09-08T23:03:59,246 ------------------------------------------------------------ 2025-09-08T23:03:59,246 ... 2025-09-08T23:03:59,246 self._rd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,247 v1, res) 2025-09-08T23:03:59,247 m += self.ndihedrals 2025-09-08T23:03:59,247 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,247 v1, res) 2025-09-08T23:03:59,247 m += self.nangle_sums 2025-09-08T23:03:59,247 ^ 2025-09-08T23:03:59,247 ------------------------------------------------------------ 2025-09-08T23:03:59,247 sella/internal/int_classes.pyx:1053:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,247 Error compiling Cython file: 2025-09-08T23:03:59,247 ------------------------------------------------------------ 2025-09-08T23:03:59,248 ... 2025-09-08T23:03:59,248 v1, res) 2025-09-08T23:03:59,248 m += self.ndihedrals 2025-09-08T23:03:59,248 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,248 v1, res) 2025-09-08T23:03:59,248 m += self.nangle_sums 2025-09-08T23:03:59,248 self._rd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,248 ^ 2025-09-08T23:03:59,248 ------------------------------------------------------------ 2025-09-08T23:03:59,248 sella/internal/int_classes.pyx:1054:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,249 Error compiling Cython file: 2025-09-08T23:03:59,249 ------------------------------------------------------------ 2025-09-08T23:03:59,249 ... 2025-09-08T23:03:59,249 v1, res) 2025-09-08T23:03:59,249 m += self.ndihedrals 2025-09-08T23:03:59,249 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,249 v1, res) 2025-09-08T23:03:59,249 m += self.nangle_sums 2025-09-08T23:03:59,249 self._rd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,249 ^ 2025-09-08T23:03:59,249 ------------------------------------------------------------ 2025-09-08T23:03:59,250 sella/internal/int_classes.pyx:1054:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,250 Error compiling Cython file: 2025-09-08T23:03:59,250 ------------------------------------------------------------ 2025-09-08T23:03:59,250 ... 2025-09-08T23:03:59,250 v1, res) 2025-09-08T23:03:59,250 m += self.ndihedrals 2025-09-08T23:03:59,250 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,250 v1, res) 2025-09-08T23:03:59,250 m += self.nangle_sums 2025-09-08T23:03:59,251 self._rd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,251 ^ 2025-09-08T23:03:59,251 ------------------------------------------------------------ 2025-09-08T23:03:59,251 sella/internal/int_classes.pyx:1054:50: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,251 Error compiling Cython file: 2025-09-08T23:03:59,251 ------------------------------------------------------------ 2025-09-08T23:03:59,251 ... 2025-09-08T23:03:59,251 m += self.ndihedrals 2025-09-08T23:03:59,251 self._rd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,251 v1, res) 2025-09-08T23:03:59,252 m += self.nangle_sums 2025-09-08T23:03:59,252 self._rd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,252 self.Dangle_diffs, v1, res) 2025-09-08T23:03:59,252 ^ 2025-09-08T23:03:59,252 ------------------------------------------------------------ 2025-09-08T23:03:59,252 sella/internal/int_classes.pyx:1055:25: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,252 Error compiling Cython file: 2025-09-08T23:03:59,252 ------------------------------------------------------------ 2025-09-08T23:03:59,252 ... 2025-09-08T23:03:59,253 cdef int dim = 3 * nind 2025-09-08T23:03:59,253 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,253 for n in range(nq): 2025-09-08T23:03:59,253 for a in range(nind): 2025-09-08T23:03:59,253 ai = q[n, a] 2025-09-08T23:03:59,253 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,253 ^ 2025-09-08T23:03:59,253 ------------------------------------------------------------ 2025-09-08T23:03:59,253 sella/internal/int_classes.pyx:1075:26: Indexing Python object not allowed without gil 2025-09-08T23:03:59,254 Error compiling Cython file: 2025-09-08T23:03:59,254 ------------------------------------------------------------ 2025-09-08T23:03:59,254 ... 2025-09-08T23:03:59,254 cdef int dim = 3 * nind 2025-09-08T23:03:59,254 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,254 for n in range(nq): 2025-09-08T23:03:59,254 for a in range(nind): 2025-09-08T23:03:59,254 ai = q[n, a] 2025-09-08T23:03:59,254 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,254 ^ 2025-09-08T23:03:59,254 ------------------------------------------------------------ 2025-09-08T23:03:59,255 sella/internal/int_classes.pyx:1075:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,255 Error compiling Cython file: 2025-09-08T23:03:59,255 ------------------------------------------------------------ 2025-09-08T23:03:59,255 ... 2025-09-08T23:03:59,255 cdef int dim = 3 * nind 2025-09-08T23:03:59,255 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,255 for n in range(nq): 2025-09-08T23:03:59,255 for a in range(nind): 2025-09-08T23:03:59,255 ai = q[n, a] 2025-09-08T23:03:59,255 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,256 ^ 2025-09-08T23:03:59,256 ------------------------------------------------------------ 2025-09-08T23:03:59,256 sella/internal/int_classes.pyx:1075:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,256 Error compiling Cython file: 2025-09-08T23:03:59,256 ------------------------------------------------------------ 2025-09-08T23:03:59,256 ... 2025-09-08T23:03:59,256 cdef int dim = 3 * nind 2025-09-08T23:03:59,256 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,256 for n in range(nq): 2025-09-08T23:03:59,256 for a in range(nind): 2025-09-08T23:03:59,257 ai = q[n, a] 2025-09-08T23:03:59,257 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,257 ^ 2025-09-08T23:03:59,257 ------------------------------------------------------------ 2025-09-08T23:03:59,257 sella/internal/int_classes.pyx:1075:27: Converting to Python object not allowed without gil 2025-09-08T23:03:59,257 Error compiling Cython file: 2025-09-08T23:03:59,257 ------------------------------------------------------------ 2025-09-08T23:03:59,257 ... 2025-09-08T23:03:59,257 cdef int dim = 3 * nind 2025-09-08T23:03:59,257 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,258 for n in range(nq): 2025-09-08T23:03:59,258 for a in range(nind): 2025-09-08T23:03:59,258 ai = q[n, a] 2025-09-08T23:03:59,258 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,258 ^ 2025-09-08T23:03:59,258 ------------------------------------------------------------ 2025-09-08T23:03:59,258 sella/internal/int_classes.pyx:1075:26: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,258 Error compiling Cython file: 2025-09-08T23:03:59,258 ------------------------------------------------------------ 2025-09-08T23:03:59,259 ... 2025-09-08T23:03:59,259 cdef int dim = 3 * nind 2025-09-08T23:03:59,259 cdef int ldD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,259 for n in range(nq): 2025-09-08T23:03:59,259 for a in range(nind): 2025-09-08T23:03:59,259 ai = q[n, a] 2025-09-08T23:03:59,259 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,259 ^ 2025-09-08T23:03:59,259 ------------------------------------------------------------ 2025-09-08T23:03:59,259 sella/internal/int_classes.pyx:1075:36: Converting to Python object not allowed without gil 2025-09-08T23:03:59,260 Error compiling Cython file: 2025-09-08T23:03:59,260 ------------------------------------------------------------ 2025-09-08T23:03:59,260 ... 2025-09-08T23:03:59,260 for n in range(nq): 2025-09-08T23:03:59,260 for a in range(nind): 2025-09-08T23:03:59,260 ai = q[n, a] 2025-09-08T23:03:59,260 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,260 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,260 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,260 ^ 2025-09-08T23:03:59,260 ------------------------------------------------------------ 2025-09-08T23:03:59,261 sella/internal/int_classes.pyx:1077:29: Indexing Python object not allowed without gil 2025-09-08T23:03:59,261 Error compiling Cython file: 2025-09-08T23:03:59,261 ------------------------------------------------------------ 2025-09-08T23:03:59,261 ... 2025-09-08T23:03:59,261 for n in range(nq): 2025-09-08T23:03:59,261 for a in range(nind): 2025-09-08T23:03:59,261 ai = q[n, a] 2025-09-08T23:03:59,261 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,261 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,261 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,262 ^ 2025-09-08T23:03:59,262 ------------------------------------------------------------ 2025-09-08T23:03:59,262 sella/internal/int_classes.pyx:1077:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,262 Error compiling Cython file: 2025-09-08T23:03:59,262 ------------------------------------------------------------ 2025-09-08T23:03:59,262 ... 2025-09-08T23:03:59,262 for n in range(nq): 2025-09-08T23:03:59,262 for a in range(nind): 2025-09-08T23:03:59,262 ai = q[n, a] 2025-09-08T23:03:59,263 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,263 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,263 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,263 ^ 2025-09-08T23:03:59,263 ------------------------------------------------------------ 2025-09-08T23:03:59,263 sella/internal/int_classes.pyx:1077:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,263 Error compiling Cython file: 2025-09-08T23:03:59,263 ------------------------------------------------------------ 2025-09-08T23:03:59,263 ... 2025-09-08T23:03:59,264 for n in range(nq): 2025-09-08T23:03:59,264 for a in range(nind): 2025-09-08T23:03:59,264 ai = q[n, a] 2025-09-08T23:03:59,264 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,264 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,264 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,264 ^ 2025-09-08T23:03:59,264 ------------------------------------------------------------ 2025-09-08T23:03:59,264 sella/internal/int_classes.pyx:1077:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,265 Error compiling Cython file: 2025-09-08T23:03:59,265 ------------------------------------------------------------ 2025-09-08T23:03:59,265 ... 2025-09-08T23:03:59,265 for a in range(nind): 2025-09-08T23:03:59,265 ai = q[n, a] 2025-09-08T23:03:59,265 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,265 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,265 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,265 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,265 ^ 2025-09-08T23:03:59,265 ------------------------------------------------------------ 2025-09-08T23:03:59,266 sella/internal/int_classes.pyx:1078:29: Indexing Python object not allowed without gil 2025-09-08T23:03:59,266 Error compiling Cython file: 2025-09-08T23:03:59,266 ------------------------------------------------------------ 2025-09-08T23:03:59,266 ... 2025-09-08T23:03:59,266 for a in range(nind): 2025-09-08T23:03:59,266 ai = q[n, a] 2025-09-08T23:03:59,266 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,266 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,266 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,266 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,267 ^ 2025-09-08T23:03:59,267 ------------------------------------------------------------ 2025-09-08T23:03:59,267 sella/internal/int_classes.pyx:1078:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,267 Error compiling Cython file: 2025-09-08T23:03:59,267 ------------------------------------------------------------ 2025-09-08T23:03:59,267 ... 2025-09-08T23:03:59,267 for a in range(nind): 2025-09-08T23:03:59,267 ai = q[n, a] 2025-09-08T23:03:59,267 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,268 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,268 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,268 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,268 ^ 2025-09-08T23:03:59,268 ------------------------------------------------------------ 2025-09-08T23:03:59,268 sella/internal/int_classes.pyx:1078:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,268 Error compiling Cython file: 2025-09-08T23:03:59,268 ------------------------------------------------------------ 2025-09-08T23:03:59,268 ... 2025-09-08T23:03:59,268 for a in range(nind): 2025-09-08T23:03:59,269 ai = q[n, a] 2025-09-08T23:03:59,269 self.work1[a, :] = v[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,269 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,269 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,269 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,269 ^ 2025-09-08T23:03:59,269 ------------------------------------------------------------ 2025-09-08T23:03:59,269 sella/internal/int_classes.pyx:1078:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,269 Error compiling Cython file: 2025-09-08T23:03:59,270 ------------------------------------------------------------ 2025-09-08T23:03:59,270 ... 2025-09-08T23:03:59,270 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,270 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,270 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,270 for a in range(nind): 2025-09-08T23:03:59,270 ai = q[n, a] 2025-09-08T23:03:59,270 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,270 ^ 2025-09-08T23:03:59,270 ------------------------------------------------------------ 2025-09-08T23:03:59,270 sella/internal/int_classes.pyx:1081:50: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,271 Error compiling Cython file: 2025-09-08T23:03:59,271 ------------------------------------------------------------ 2025-09-08T23:03:59,271 ... 2025-09-08T23:03:59,271 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,271 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,271 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,271 for a in range(nind): 2025-09-08T23:03:59,271 ai = q[n, a] 2025-09-08T23:03:59,271 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,271 ^ 2025-09-08T23:03:59,272 ------------------------------------------------------------ 2025-09-08T23:03:59,272 sella/internal/int_classes.pyx:1081:50: Indexing Python object not allowed without gil 2025-09-08T23:03:59,272 Error compiling Cython file: 2025-09-08T23:03:59,272 ------------------------------------------------------------ 2025-09-08T23:03:59,272 ... 2025-09-08T23:03:59,272 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,272 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,272 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,272 for a in range(nind): 2025-09-08T23:03:59,273 ai = q[n, a] 2025-09-08T23:03:59,273 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,273 ^ 2025-09-08T23:03:59,273 ------------------------------------------------------------ 2025-09-08T23:03:59,273 sella/internal/int_classes.pyx:1081:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,273 Error compiling Cython file: 2025-09-08T23:03:59,273 ------------------------------------------------------------ 2025-09-08T23:03:59,273 ... 2025-09-08T23:03:59,273 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,273 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,274 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,274 for a in range(nind): 2025-09-08T23:03:59,274 ai = q[n, a] 2025-09-08T23:03:59,274 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,274 ^ 2025-09-08T23:03:59,274 ------------------------------------------------------------ 2025-09-08T23:03:59,274 sella/internal/int_classes.pyx:1081:50: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,274 Error compiling Cython file: 2025-09-08T23:03:59,274 ------------------------------------------------------------ 2025-09-08T23:03:59,274 ... 2025-09-08T23:03:59,275 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,275 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,275 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,275 for a in range(nind): 2025-09-08T23:03:59,275 ai = q[n, a] 2025-09-08T23:03:59,275 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,275 ^ 2025-09-08T23:03:59,275 ------------------------------------------------------------ 2025-09-08T23:03:59,275 sella/internal/int_classes.pyx:1081:51: Converting to Python object not allowed without gil 2025-09-08T23:03:59,276 Error compiling Cython file: 2025-09-08T23:03:59,276 ------------------------------------------------------------ 2025-09-08T23:03:59,276 ... 2025-09-08T23:03:59,276 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &ldD2, 2025-09-08T23:03:59,276 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,276 &self.work2[0, 0], &self.sw2) 2025-09-08T23:03:59,276 for a in range(nind): 2025-09-08T23:03:59,276 ai = q[n, a] 2025-09-08T23:03:59,276 res[start + n, ai, :] = self.work2[a, :] 2025-09-08T23:03:59,276 ^ 2025-09-08T23:03:59,276 ------------------------------------------------------------ 2025-09-08T23:03:59,277 sella/internal/int_classes.pyx:1081:50: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,277 Error compiling Cython file: 2025-09-08T23:03:59,277 ------------------------------------------------------------ 2025-09-08T23:03:59,277 ... 2025-09-08T23:03:59,277 assert len(v2) == self.nx 2025-09-08T23:03:59,277 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,277 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,277 with nogil: 2025-09-08T23:03:59,277 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,278 ^ 2025-09-08T23:03:59,278 ------------------------------------------------------------ 2025-09-08T23:03:59,278 sella/internal/int_classes.pyx:1092:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,278 Error compiling Cython file: 2025-09-08T23:03:59,278 ------------------------------------------------------------ 2025-09-08T23:03:59,278 ... 2025-09-08T23:03:59,278 assert len(v2) == self.nx 2025-09-08T23:03:59,278 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,279 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,279 with nogil: 2025-09-08T23:03:59,279 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,279 ^ 2025-09-08T23:03:59,279 ------------------------------------------------------------ 2025-09-08T23:03:59,279 sella/internal/int_classes.pyx:1092:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,279 Error compiling Cython file: 2025-09-08T23:03:59,279 ------------------------------------------------------------ 2025-09-08T23:03:59,279 ... 2025-09-08T23:03:59,279 assert len(v2) == self.nx 2025-09-08T23:03:59,280 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,280 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,280 with nogil: 2025-09-08T23:03:59,280 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,280 ^ 2025-09-08T23:03:59,280 ------------------------------------------------------------ 2025-09-08T23:03:59,280 sella/internal/int_classes.pyx:1092:44: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,280 Error compiling Cython file: 2025-09-08T23:03:59,281 ------------------------------------------------------------ 2025-09-08T23:03:59,281 ... 2025-09-08T23:03:59,281 assert len(v2) == self.nx 2025-09-08T23:03:59,281 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,281 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,281 with nogil: 2025-09-08T23:03:59,281 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,281 ^ 2025-09-08T23:03:59,281 ------------------------------------------------------------ 2025-09-08T23:03:59,281 sella/internal/int_classes.pyx:1092:56: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,282 Error compiling Cython file: 2025-09-08T23:03:59,282 ------------------------------------------------------------ 2025-09-08T23:03:59,282 ... 2025-09-08T23:03:59,282 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,282 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,282 with nogil: 2025-09-08T23:03:59,282 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,282 m += self.nbonds 2025-09-08T23:03:59,283 ^ 2025-09-08T23:03:59,283 ------------------------------------------------------------ 2025-09-08T23:03:59,283 sella/internal/int_classes.pyx:1093:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,283 Error compiling Cython file: 2025-09-08T23:03:59,283 ------------------------------------------------------------ 2025-09-08T23:03:59,283 ... 2025-09-08T23:03:59,283 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,283 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,284 with nogil: 2025-09-08T23:03:59,284 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,284 m += self.nbonds 2025-09-08T23:03:59,284 ^ 2025-09-08T23:03:59,284 ------------------------------------------------------------ 2025-09-08T23:03:59,284 sella/internal/int_classes.pyx:1093:12: Operation not allowed without gil 2025-09-08T23:03:59,284 Error compiling Cython file: 2025-09-08T23:03:59,284 ------------------------------------------------------------ 2025-09-08T23:03:59,284 ... 2025-09-08T23:03:59,285 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,285 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,285 with nogil: 2025-09-08T23:03:59,285 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,285 m += self.nbonds 2025-09-08T23:03:59,285 ^ 2025-09-08T23:03:59,285 ------------------------------------------------------------ 2025-09-08T23:03:59,285 sella/internal/int_classes.pyx:1093:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,285 Error compiling Cython file: 2025-09-08T23:03:59,286 ------------------------------------------------------------ 2025-09-08T23:03:59,286 ... 2025-09-08T23:03:59,286 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,286 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,286 with nogil: 2025-09-08T23:03:59,286 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,286 m += self.nbonds 2025-09-08T23:03:59,286 ^ 2025-09-08T23:03:59,286 ------------------------------------------------------------ 2025-09-08T23:03:59,286 sella/internal/int_classes.pyx:1093:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,287 Error compiling Cython file: 2025-09-08T23:03:59,287 ------------------------------------------------------------ 2025-09-08T23:03:59,287 ... 2025-09-08T23:03:59,287 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,287 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,287 with nogil: 2025-09-08T23:03:59,287 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,287 m += self.nbonds 2025-09-08T23:03:59,287 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,287 ^ 2025-09-08T23:03:59,288 ------------------------------------------------------------ 2025-09-08T23:03:59,288 sella/internal/int_classes.pyx:1094:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,288 Error compiling Cython file: 2025-09-08T23:03:59,288 ------------------------------------------------------------ 2025-09-08T23:03:59,288 ... 2025-09-08T23:03:59,288 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,288 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,288 with nogil: 2025-09-08T23:03:59,288 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,289 m += self.nbonds 2025-09-08T23:03:59,289 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,289 ^ 2025-09-08T23:03:59,289 ------------------------------------------------------------ 2025-09-08T23:03:59,289 sella/internal/int_classes.pyx:1094:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,289 Error compiling Cython file: 2025-09-08T23:03:59,289 ------------------------------------------------------------ 2025-09-08T23:03:59,289 ... 2025-09-08T23:03:59,289 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,289 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,290 with nogil: 2025-09-08T23:03:59,290 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,290 m += self.nbonds 2025-09-08T23:03:59,290 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,290 ^ 2025-09-08T23:03:59,290 ------------------------------------------------------------ 2025-09-08T23:03:59,290 sella/internal/int_classes.pyx:1094:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,290 Error compiling Cython file: 2025-09-08T23:03:59,290 ------------------------------------------------------------ 2025-09-08T23:03:59,291 ... 2025-09-08T23:03:59,291 result_np = np.zeros(self.nq, dtype=np.float64) 2025-09-08T23:03:59,291 cdef double[:] res = memoryview(result_np) 2025-09-08T23:03:59,291 with nogil: 2025-09-08T23:03:59,291 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,291 m += self.nbonds 2025-09-08T23:03:59,291 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,291 ^ 2025-09-08T23:03:59,291 ------------------------------------------------------------ 2025-09-08T23:03:59,291 sella/internal/int_classes.pyx:1094:58: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,292 Error compiling Cython file: 2025-09-08T23:03:59,292 ------------------------------------------------------------ 2025-09-08T23:03:59,292 ... 2025-09-08T23:03:59,292 with nogil: 2025-09-08T23:03:59,292 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,292 m += self.nbonds 2025-09-08T23:03:59,292 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,292 res) 2025-09-08T23:03:59,292 m += self.nangles 2025-09-08T23:03:59,292 ^ 2025-09-08T23:03:59,293 ------------------------------------------------------------ 2025-09-08T23:03:59,293 sella/internal/int_classes.pyx:1096:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,293 Error compiling Cython file: 2025-09-08T23:03:59,293 ------------------------------------------------------------ 2025-09-08T23:03:59,293 ... 2025-09-08T23:03:59,293 with nogil: 2025-09-08T23:03:59,293 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,293 m += self.nbonds 2025-09-08T23:03:59,293 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,294 res) 2025-09-08T23:03:59,294 m += self.nangles 2025-09-08T23:03:59,294 ^ 2025-09-08T23:03:59,294 ------------------------------------------------------------ 2025-09-08T23:03:59,294 sella/internal/int_classes.pyx:1096:12: Operation not allowed without gil 2025-09-08T23:03:59,294 Error compiling Cython file: 2025-09-08T23:03:59,294 ------------------------------------------------------------ 2025-09-08T23:03:59,294 ... 2025-09-08T23:03:59,294 with nogil: 2025-09-08T23:03:59,295 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,295 m += self.nbonds 2025-09-08T23:03:59,295 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,295 res) 2025-09-08T23:03:59,295 m += self.nangles 2025-09-08T23:03:59,295 ^ 2025-09-08T23:03:59,295 ------------------------------------------------------------ 2025-09-08T23:03:59,295 sella/internal/int_classes.pyx:1096:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,295 Error compiling Cython file: 2025-09-08T23:03:59,295 ------------------------------------------------------------ 2025-09-08T23:03:59,296 ... 2025-09-08T23:03:59,296 with nogil: 2025-09-08T23:03:59,296 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,296 m += self.nbonds 2025-09-08T23:03:59,296 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,296 res) 2025-09-08T23:03:59,296 m += self.nangles 2025-09-08T23:03:59,296 ^ 2025-09-08T23:03:59,296 ------------------------------------------------------------ 2025-09-08T23:03:59,296 sella/internal/int_classes.pyx:1096:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,297 Error compiling Cython file: 2025-09-08T23:03:59,297 ------------------------------------------------------------ 2025-09-08T23:03:59,297 ... 2025-09-08T23:03:59,297 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,297 m += self.nbonds 2025-09-08T23:03:59,297 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,297 res) 2025-09-08T23:03:59,297 m += self.nangles 2025-09-08T23:03:59,297 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,297 ^ 2025-09-08T23:03:59,297 ------------------------------------------------------------ 2025-09-08T23:03:59,298 sella/internal/int_classes.pyx:1097:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,298 Error compiling Cython file: 2025-09-08T23:03:59,298 ------------------------------------------------------------ 2025-09-08T23:03:59,298 ... 2025-09-08T23:03:59,298 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,298 m += self.nbonds 2025-09-08T23:03:59,298 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,298 res) 2025-09-08T23:03:59,298 m += self.nangles 2025-09-08T23:03:59,299 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,299 ^ 2025-09-08T23:03:59,299 ------------------------------------------------------------ 2025-09-08T23:03:59,299 sella/internal/int_classes.pyx:1097:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,299 Error compiling Cython file: 2025-09-08T23:03:59,299 ------------------------------------------------------------ 2025-09-08T23:03:59,299 ... 2025-09-08T23:03:59,299 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,299 m += self.nbonds 2025-09-08T23:03:59,300 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,300 res) 2025-09-08T23:03:59,300 m += self.nangles 2025-09-08T23:03:59,300 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,300 ^ 2025-09-08T23:03:59,300 ------------------------------------------------------------ 2025-09-08T23:03:59,300 sella/internal/int_classes.pyx:1097:48: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,300 Error compiling Cython file: 2025-09-08T23:03:59,300 ------------------------------------------------------------ 2025-09-08T23:03:59,300 ... 2025-09-08T23:03:59,301 self._dd(m, self.nbonds, 2, self.bonds, self.Dbonds, v1, v2, res) 2025-09-08T23:03:59,301 m += self.nbonds 2025-09-08T23:03:59,301 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,301 res) 2025-09-08T23:03:59,301 m += self.nangles 2025-09-08T23:03:59,301 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,301 ^ 2025-09-08T23:03:59,301 ------------------------------------------------------------ 2025-09-08T23:03:59,301 sella/internal/int_classes.pyx:1097:64: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,302 Error compiling Cython file: 2025-09-08T23:03:59,302 ------------------------------------------------------------ 2025-09-08T23:03:59,302 ... 2025-09-08T23:03:59,302 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,302 res) 2025-09-08T23:03:59,302 m += self.nangles 2025-09-08T23:03:59,302 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,302 v1, v2, res) 2025-09-08T23:03:59,302 m += self.ndihedrals 2025-09-08T23:03:59,302 ^ 2025-09-08T23:03:59,303 ------------------------------------------------------------ 2025-09-08T23:03:59,303 sella/internal/int_classes.pyx:1099:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,303 Error compiling Cython file: 2025-09-08T23:03:59,303 ------------------------------------------------------------ 2025-09-08T23:03:59,303 ... 2025-09-08T23:03:59,303 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,303 res) 2025-09-08T23:03:59,303 m += self.nangles 2025-09-08T23:03:59,303 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,303 v1, v2, res) 2025-09-08T23:03:59,304 m += self.ndihedrals 2025-09-08T23:03:59,304 ^ 2025-09-08T23:03:59,304 ------------------------------------------------------------ 2025-09-08T23:03:59,304 sella/internal/int_classes.pyx:1099:12: Operation not allowed without gil 2025-09-08T23:03:59,304 Error compiling Cython file: 2025-09-08T23:03:59,304 ------------------------------------------------------------ 2025-09-08T23:03:59,304 ... 2025-09-08T23:03:59,304 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,304 res) 2025-09-08T23:03:59,304 m += self.nangles 2025-09-08T23:03:59,305 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,305 v1, v2, res) 2025-09-08T23:03:59,305 m += self.ndihedrals 2025-09-08T23:03:59,305 ^ 2025-09-08T23:03:59,305 ------------------------------------------------------------ 2025-09-08T23:03:59,305 sella/internal/int_classes.pyx:1099:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,305 Error compiling Cython file: 2025-09-08T23:03:59,305 ------------------------------------------------------------ 2025-09-08T23:03:59,305 ... 2025-09-08T23:03:59,306 self._dd(m, self.nangles, 3, self.angles, self.Dangles, v1, v2, 2025-09-08T23:03:59,306 res) 2025-09-08T23:03:59,306 m += self.nangles 2025-09-08T23:03:59,306 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,306 v1, v2, res) 2025-09-08T23:03:59,306 m += self.ndihedrals 2025-09-08T23:03:59,306 ^ 2025-09-08T23:03:59,306 ------------------------------------------------------------ 2025-09-08T23:03:59,306 sella/internal/int_classes.pyx:1099:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,306 Error compiling Cython file: 2025-09-08T23:03:59,307 ------------------------------------------------------------ 2025-09-08T23:03:59,307 ... 2025-09-08T23:03:59,307 res) 2025-09-08T23:03:59,307 m += self.nangles 2025-09-08T23:03:59,307 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,307 v1, v2, res) 2025-09-08T23:03:59,307 m += self.ndihedrals 2025-09-08T23:03:59,307 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,307 ^ 2025-09-08T23:03:59,307 ------------------------------------------------------------ 2025-09-08T23:03:59,308 sella/internal/int_classes.pyx:1100:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,308 Error compiling Cython file: 2025-09-08T23:03:59,308 ------------------------------------------------------------ 2025-09-08T23:03:59,308 ... 2025-09-08T23:03:59,308 res) 2025-09-08T23:03:59,308 m += self.nangles 2025-09-08T23:03:59,308 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,308 v1, v2, res) 2025-09-08T23:03:59,308 m += self.ndihedrals 2025-09-08T23:03:59,308 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,308 ^ 2025-09-08T23:03:59,309 ------------------------------------------------------------ 2025-09-08T23:03:59,309 sella/internal/int_classes.pyx:1100:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,309 Error compiling Cython file: 2025-09-08T23:03:59,309 ------------------------------------------------------------ 2025-09-08T23:03:59,309 ... 2025-09-08T23:03:59,309 res) 2025-09-08T23:03:59,309 m += self.nangles 2025-09-08T23:03:59,309 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,309 v1, v2, res) 2025-09-08T23:03:59,310 m += self.ndihedrals 2025-09-08T23:03:59,310 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,310 ^ 2025-09-08T23:03:59,310 ------------------------------------------------------------ 2025-09-08T23:03:59,310 sella/internal/int_classes.pyx:1100:49: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,310 Error compiling Cython file: 2025-09-08T23:03:59,310 ------------------------------------------------------------ 2025-09-08T23:03:59,310 ... 2025-09-08T23:03:59,310 res) 2025-09-08T23:03:59,310 m += self.nangles 2025-09-08T23:03:59,311 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,311 v1, v2, res) 2025-09-08T23:03:59,311 m += self.ndihedrals 2025-09-08T23:03:59,311 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,311 ^ 2025-09-08T23:03:59,311 ------------------------------------------------------------ 2025-09-08T23:03:59,311 sella/internal/int_classes.pyx:1100:66: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,311 Error compiling Cython file: 2025-09-08T23:03:59,311 ------------------------------------------------------------ 2025-09-08T23:03:59,312 ... 2025-09-08T23:03:59,312 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,312 v1, v2, res) 2025-09-08T23:03:59,312 m += self.ndihedrals 2025-09-08T23:03:59,312 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,312 v1, v2, res) 2025-09-08T23:03:59,312 m += self.nangle_sums 2025-09-08T23:03:59,312 ^ 2025-09-08T23:03:59,312 ------------------------------------------------------------ 2025-09-08T23:03:59,312 sella/internal/int_classes.pyx:1102:12: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,313 Error compiling Cython file: 2025-09-08T23:03:59,313 ------------------------------------------------------------ 2025-09-08T23:03:59,313 ... 2025-09-08T23:03:59,313 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,313 v1, v2, res) 2025-09-08T23:03:59,313 m += self.ndihedrals 2025-09-08T23:03:59,313 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,313 v1, v2, res) 2025-09-08T23:03:59,313 m += self.nangle_sums 2025-09-08T23:03:59,313 ^ 2025-09-08T23:03:59,314 ------------------------------------------------------------ 2025-09-08T23:03:59,314 sella/internal/int_classes.pyx:1102:12: Operation not allowed without gil 2025-09-08T23:03:59,314 Error compiling Cython file: 2025-09-08T23:03:59,314 ------------------------------------------------------------ 2025-09-08T23:03:59,314 ... 2025-09-08T23:03:59,314 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,314 v1, v2, res) 2025-09-08T23:03:59,314 m += self.ndihedrals 2025-09-08T23:03:59,314 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,314 v1, v2, res) 2025-09-08T23:03:59,315 m += self.nangle_sums 2025-09-08T23:03:59,315 ^ 2025-09-08T23:03:59,315 ------------------------------------------------------------ 2025-09-08T23:03:59,315 sella/internal/int_classes.pyx:1102:12: Converting to Python object not allowed without gil 2025-09-08T23:03:59,315 Error compiling Cython file: 2025-09-08T23:03:59,315 ------------------------------------------------------------ 2025-09-08T23:03:59,315 ... 2025-09-08T23:03:59,315 self._dd(m, self.ndihedrals, 4, self.dihedrals, self.Ddihedrals, 2025-09-08T23:03:59,315 v1, v2, res) 2025-09-08T23:03:59,316 m += self.ndihedrals 2025-09-08T23:03:59,316 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,316 v1, v2, res) 2025-09-08T23:03:59,316 m += self.nangle_sums 2025-09-08T23:03:59,316 ^ 2025-09-08T23:03:59,316 ------------------------------------------------------------ 2025-09-08T23:03:59,316 sella/internal/int_classes.pyx:1102:21: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,316 Error compiling Cython file: 2025-09-08T23:03:59,316 ------------------------------------------------------------ 2025-09-08T23:03:59,316 ... 2025-09-08T23:03:59,317 v1, v2, res) 2025-09-08T23:03:59,317 m += self.ndihedrals 2025-09-08T23:03:59,317 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,317 v1, v2, res) 2025-09-08T23:03:59,317 m += self.nangle_sums 2025-09-08T23:03:59,317 self._dd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,317 ^ 2025-09-08T23:03:59,317 ------------------------------------------------------------ 2025-09-08T23:03:59,317 sella/internal/int_classes.pyx:1103:28: Coercion from Python not allowed without the GIL 2025-09-08T23:03:59,318 Error compiling Cython file: 2025-09-08T23:03:59,318 ------------------------------------------------------------ 2025-09-08T23:03:59,318 ... 2025-09-08T23:03:59,318 v1, v2, res) 2025-09-08T23:03:59,318 m += self.ndihedrals 2025-09-08T23:03:59,318 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,318 v1, v2, res) 2025-09-08T23:03:59,318 m += self.nangle_sums 2025-09-08T23:03:59,318 self._dd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,318 ^ 2025-09-08T23:03:59,318 ------------------------------------------------------------ 2025-09-08T23:03:59,319 sella/internal/int_classes.pyx:1103:28: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,319 Error compiling Cython file: 2025-09-08T23:03:59,319 ------------------------------------------------------------ 2025-09-08T23:03:59,319 ... 2025-09-08T23:03:59,319 v1, v2, res) 2025-09-08T23:03:59,319 m += self.ndihedrals 2025-09-08T23:03:59,319 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,319 v1, v2, res) 2025-09-08T23:03:59,319 m += self.nangle_sums 2025-09-08T23:03:59,320 self._dd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,320 ^ 2025-09-08T23:03:59,320 ------------------------------------------------------------ 2025-09-08T23:03:59,320 sella/internal/int_classes.pyx:1103:50: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,320 Error compiling Cython file: 2025-09-08T23:03:59,320 ------------------------------------------------------------ 2025-09-08T23:03:59,320 ... 2025-09-08T23:03:59,320 m += self.ndihedrals 2025-09-08T23:03:59,320 self._dd(m, self.nangle_sums, 4, self.angle_sums, self.Dangle_sums, 2025-09-08T23:03:59,320 v1, v2, res) 2025-09-08T23:03:59,321 m += self.nangle_sums 2025-09-08T23:03:59,321 self._dd(m, self.nangle_diffs, 4, self.angle_diffs, 2025-09-08T23:03:59,321 self.Dangle_diffs, v1, v2, res) 2025-09-08T23:03:59,321 ^ 2025-09-08T23:03:59,321 ------------------------------------------------------------ 2025-09-08T23:03:59,321 sella/internal/int_classes.pyx:1104:25: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,321 Error compiling Cython file: 2025-09-08T23:03:59,321 ------------------------------------------------------------ 2025-09-08T23:03:59,321 ... 2025-09-08T23:03:59,322 cdef int dim = 3 * nind 2025-09-08T23:03:59,322 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,322 for n in range(nq): 2025-09-08T23:03:59,322 for a in range(nind): 2025-09-08T23:03:59,322 ai = q[n, a] 2025-09-08T23:03:59,322 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,322 ^ 2025-09-08T23:03:59,322 ------------------------------------------------------------ 2025-09-08T23:03:59,322 sella/internal/int_classes.pyx:1124:26: Indexing Python object not allowed without gil 2025-09-08T23:03:59,323 Error compiling Cython file: 2025-09-08T23:03:59,323 ------------------------------------------------------------ 2025-09-08T23:03:59,323 ... 2025-09-08T23:03:59,323 cdef int dim = 3 * nind 2025-09-08T23:03:59,323 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,323 for n in range(nq): 2025-09-08T23:03:59,323 for a in range(nind): 2025-09-08T23:03:59,323 ai = q[n, a] 2025-09-08T23:03:59,323 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,323 ^ 2025-09-08T23:03:59,323 ------------------------------------------------------------ 2025-09-08T23:03:59,324 sella/internal/int_classes.pyx:1124:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,324 Error compiling Cython file: 2025-09-08T23:03:59,324 ------------------------------------------------------------ 2025-09-08T23:03:59,324 ... 2025-09-08T23:03:59,324 cdef int dim = 3 * nind 2025-09-08T23:03:59,324 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,324 for n in range(nq): 2025-09-08T23:03:59,324 for a in range(nind): 2025-09-08T23:03:59,324 ai = q[n, a] 2025-09-08T23:03:59,324 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,325 ^ 2025-09-08T23:03:59,325 ------------------------------------------------------------ 2025-09-08T23:03:59,325 sella/internal/int_classes.pyx:1124:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,325 Error compiling Cython file: 2025-09-08T23:03:59,325 ------------------------------------------------------------ 2025-09-08T23:03:59,325 ... 2025-09-08T23:03:59,325 cdef int dim = 3 * nind 2025-09-08T23:03:59,325 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,325 for n in range(nq): 2025-09-08T23:03:59,325 for a in range(nind): 2025-09-08T23:03:59,326 ai = q[n, a] 2025-09-08T23:03:59,326 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,326 ^ 2025-09-08T23:03:59,326 ------------------------------------------------------------ 2025-09-08T23:03:59,326 sella/internal/int_classes.pyx:1124:27: Converting to Python object not allowed without gil 2025-09-08T23:03:59,326 Error compiling Cython file: 2025-09-08T23:03:59,326 ------------------------------------------------------------ 2025-09-08T23:03:59,326 ... 2025-09-08T23:03:59,326 cdef int dim = 3 * nind 2025-09-08T23:03:59,326 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,327 for n in range(nq): 2025-09-08T23:03:59,327 for a in range(nind): 2025-09-08T23:03:59,327 ai = q[n, a] 2025-09-08T23:03:59,327 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,327 ^ 2025-09-08T23:03:59,327 ------------------------------------------------------------ 2025-09-08T23:03:59,327 sella/internal/int_classes.pyx:1124:26: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,327 Error compiling Cython file: 2025-09-08T23:03:59,327 ------------------------------------------------------------ 2025-09-08T23:03:59,328 ... 2025-09-08T23:03:59,328 cdef int dim = 3 * nind 2025-09-08T23:03:59,328 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,328 for n in range(nq): 2025-09-08T23:03:59,328 for a in range(nind): 2025-09-08T23:03:59,328 ai = q[n, a] 2025-09-08T23:03:59,328 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,328 ^ 2025-09-08T23:03:59,328 ------------------------------------------------------------ 2025-09-08T23:03:59,328 sella/internal/int_classes.pyx:1124:37: Converting to Python object not allowed without gil 2025-09-08T23:03:59,329 Error compiling Cython file: 2025-09-08T23:03:59,329 ------------------------------------------------------------ 2025-09-08T23:03:59,329 ... 2025-09-08T23:03:59,329 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,329 for n in range(nq): 2025-09-08T23:03:59,329 for a in range(nind): 2025-09-08T23:03:59,329 ai = q[n, a] 2025-09-08T23:03:59,329 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,329 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,329 ^ 2025-09-08T23:03:59,329 ------------------------------------------------------------ 2025-09-08T23:03:59,330 sella/internal/int_classes.pyx:1125:26: Indexing Python object not allowed without gil 2025-09-08T23:03:59,330 Error compiling Cython file: 2025-09-08T23:03:59,330 ------------------------------------------------------------ 2025-09-08T23:03:59,330 ... 2025-09-08T23:03:59,330 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,330 for n in range(nq): 2025-09-08T23:03:59,330 for a in range(nind): 2025-09-08T23:03:59,330 ai = q[n, a] 2025-09-08T23:03:59,330 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,331 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,331 ^ 2025-09-08T23:03:59,331 ------------------------------------------------------------ 2025-09-08T23:03:59,331 sella/internal/int_classes.pyx:1125:20: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,331 Error compiling Cython file: 2025-09-08T23:03:59,331 ------------------------------------------------------------ 2025-09-08T23:03:59,331 ... 2025-09-08T23:03:59,331 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,331 for n in range(nq): 2025-09-08T23:03:59,331 for a in range(nind): 2025-09-08T23:03:59,332 ai = q[n, a] 2025-09-08T23:03:59,332 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,332 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,332 ^ 2025-09-08T23:03:59,332 ------------------------------------------------------------ 2025-09-08T23:03:59,332 sella/internal/int_classes.pyx:1125:26: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,332 Error compiling Cython file: 2025-09-08T23:03:59,332 ------------------------------------------------------------ 2025-09-08T23:03:59,332 ... 2025-09-08T23:03:59,333 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,333 for n in range(nq): 2025-09-08T23:03:59,333 for a in range(nind): 2025-09-08T23:03:59,333 ai = q[n, a] 2025-09-08T23:03:59,333 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,333 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,333 ^ 2025-09-08T23:03:59,333 ------------------------------------------------------------ 2025-09-08T23:03:59,333 sella/internal/int_classes.pyx:1125:27: Converting to Python object not allowed without gil 2025-09-08T23:03:59,333 Error compiling Cython file: 2025-09-08T23:03:59,334 ------------------------------------------------------------ 2025-09-08T23:03:59,334 ... 2025-09-08T23:03:59,334 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,334 for n in range(nq): 2025-09-08T23:03:59,334 for a in range(nind): 2025-09-08T23:03:59,334 ai = q[n, a] 2025-09-08T23:03:59,334 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,334 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,334 ^ 2025-09-08T23:03:59,334 ------------------------------------------------------------ 2025-09-08T23:03:59,335 sella/internal/int_classes.pyx:1125:26: Constructing Python slice object not allowed without gil 2025-09-08T23:03:59,335 Error compiling Cython file: 2025-09-08T23:03:59,335 ------------------------------------------------------------ 2025-09-08T23:03:59,335 ... 2025-09-08T23:03:59,335 cdef int sD2 = dim * (D2.strides[4] >> 3) 2025-09-08T23:03:59,335 for n in range(nq): 2025-09-08T23:03:59,335 for a in range(nind): 2025-09-08T23:03:59,335 ai = q[n, a] 2025-09-08T23:03:59,335 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,335 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,336 ^ 2025-09-08T23:03:59,336 ------------------------------------------------------------ 2025-09-08T23:03:59,336 sella/internal/int_classes.pyx:1125:37: Converting to Python object not allowed without gil 2025-09-08T23:03:59,336 Error compiling Cython file: 2025-09-08T23:03:59,336 ------------------------------------------------------------ 2025-09-08T23:03:59,336 ... 2025-09-08T23:03:59,336 for a in range(nind): 2025-09-08T23:03:59,336 ai = q[n, a] 2025-09-08T23:03:59,336 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,336 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,337 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,337 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,337 ^ 2025-09-08T23:03:59,337 ------------------------------------------------------------ 2025-09-08T23:03:59,337 sella/internal/int_classes.pyx:1127:29: Indexing Python object not allowed without gil 2025-09-08T23:03:59,337 Error compiling Cython file: 2025-09-08T23:03:59,337 ------------------------------------------------------------ 2025-09-08T23:03:59,337 ... 2025-09-08T23:03:59,337 for a in range(nind): 2025-09-08T23:03:59,337 ai = q[n, a] 2025-09-08T23:03:59,338 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,338 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,338 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,338 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,338 ^ 2025-09-08T23:03:59,338 ------------------------------------------------------------ 2025-09-08T23:03:59,338 sella/internal/int_classes.pyx:1127:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,338 Error compiling Cython file: 2025-09-08T23:03:59,339 ------------------------------------------------------------ 2025-09-08T23:03:59,339 ... 2025-09-08T23:03:59,339 for a in range(nind): 2025-09-08T23:03:59,339 ai = q[n, a] 2025-09-08T23:03:59,339 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,339 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,339 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,339 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,339 ^ 2025-09-08T23:03:59,339 ------------------------------------------------------------ 2025-09-08T23:03:59,339 sella/internal/int_classes.pyx:1127:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,340 Error compiling Cython file: 2025-09-08T23:03:59,340 ------------------------------------------------------------ 2025-09-08T23:03:59,340 ... 2025-09-08T23:03:59,340 for a in range(nind): 2025-09-08T23:03:59,340 ai = q[n, a] 2025-09-08T23:03:59,340 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,340 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,340 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,340 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,340 ^ 2025-09-08T23:03:59,341 ------------------------------------------------------------ 2025-09-08T23:03:59,341 sella/internal/int_classes.pyx:1127:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,341 Error compiling Cython file: 2025-09-08T23:03:59,341 ------------------------------------------------------------ 2025-09-08T23:03:59,341 ... 2025-09-08T23:03:59,341 ai = q[n, a] 2025-09-08T23:03:59,341 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,341 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,341 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,341 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,342 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,342 ^ 2025-09-08T23:03:59,342 ------------------------------------------------------------ 2025-09-08T23:03:59,342 sella/internal/int_classes.pyx:1128:29: Indexing Python object not allowed without gil 2025-09-08T23:03:59,342 Error compiling Cython file: 2025-09-08T23:03:59,342 ------------------------------------------------------------ 2025-09-08T23:03:59,342 ... 2025-09-08T23:03:59,342 ai = q[n, a] 2025-09-08T23:03:59,343 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,343 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,343 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,343 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,343 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,343 ^ 2025-09-08T23:03:59,343 ------------------------------------------------------------ 2025-09-08T23:03:59,343 sella/internal/int_classes.pyx:1128:23: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,343 Error compiling Cython file: 2025-09-08T23:03:59,343 ------------------------------------------------------------ 2025-09-08T23:03:59,344 ... 2025-09-08T23:03:59,344 ai = q[n, a] 2025-09-08T23:03:59,344 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,344 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,344 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,344 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,344 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,344 ^ 2025-09-08T23:03:59,344 ------------------------------------------------------------ 2025-09-08T23:03:59,344 sella/internal/int_classes.pyx:1128:29: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,345 Error compiling Cython file: 2025-09-08T23:03:59,345 ------------------------------------------------------------ 2025-09-08T23:03:59,345 ... 2025-09-08T23:03:59,345 ai = q[n, a] 2025-09-08T23:03:59,345 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,345 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,345 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,345 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,345 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,345 ^ 2025-09-08T23:03:59,345 ------------------------------------------------------------ 2025-09-08T23:03:59,346 sella/internal/int_classes.pyx:1128:42: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,346 Error compiling Cython file: 2025-09-08T23:03:59,346 ------------------------------------------------------------ 2025-09-08T23:03:59,346 ... 2025-09-08T23:03:59,346 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,346 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,346 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,346 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,346 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,347 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,347 ^ 2025-09-08T23:03:59,347 ------------------------------------------------------------ 2025-09-08T23:03:59,347 sella/internal/int_classes.pyx:1129:51: Indexing Python object not allowed without gil 2025-09-08T23:03:59,347 Error compiling Cython file: 2025-09-08T23:03:59,347 ------------------------------------------------------------ 2025-09-08T23:03:59,347 ... 2025-09-08T23:03:59,347 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,347 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,348 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,348 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,348 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,348 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,348 ^ 2025-09-08T23:03:59,348 ------------------------------------------------------------ 2025-09-08T23:03:59,348 sella/internal/int_classes.pyx:1129:45: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,348 Error compiling Cython file: 2025-09-08T23:03:59,348 ------------------------------------------------------------ 2025-09-08T23:03:59,348 ... 2025-09-08T23:03:59,349 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,349 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,349 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,349 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,349 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,349 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,349 ^ 2025-09-08T23:03:59,349 ------------------------------------------------------------ 2025-09-08T23:03:59,349 sella/internal/int_classes.pyx:1129:51: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,349 Error compiling Cython file: 2025-09-08T23:03:59,350 ------------------------------------------------------------ 2025-09-08T23:03:59,350 ... 2025-09-08T23:03:59,350 self.work1[a, :] = v1[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,350 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,350 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,350 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,350 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,350 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,350 ^ 2025-09-08T23:03:59,350 ------------------------------------------------------------ 2025-09-08T23:03:59,351 sella/internal/int_classes.pyx:1129:64: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,351 Error compiling Cython file: 2025-09-08T23:03:59,351 ------------------------------------------------------------ 2025-09-08T23:03:59,351 ... 2025-09-08T23:03:59,351 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,351 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,351 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,351 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,351 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,351 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,351 ^ 2025-09-08T23:03:59,352 ------------------------------------------------------------ 2025-09-08T23:03:59,352 sella/internal/int_classes.pyx:1130:45: Indexing Python object not allowed without gil 2025-09-08T23:03:59,352 Error compiling Cython file: 2025-09-08T23:03:59,352 ------------------------------------------------------------ 2025-09-08T23:03:59,352 ... 2025-09-08T23:03:59,352 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,352 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,352 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,352 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,353 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,353 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,353 ^ 2025-09-08T23:03:59,353 ------------------------------------------------------------ 2025-09-08T23:03:59,353 sella/internal/int_classes.pyx:1130:39: Accessing Python attribute not allowed without gil 2025-09-08T23:03:59,353 Error compiling Cython file: 2025-09-08T23:03:59,353 ------------------------------------------------------------ 2025-09-08T23:03:59,353 ... 2025-09-08T23:03:59,353 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,353 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,354 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,354 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,354 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,354 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,354 ^ 2025-09-08T23:03:59,354 ------------------------------------------------------------ 2025-09-08T23:03:59,354 sella/internal/int_classes.pyx:1130:45: Constructing Python tuple not allowed without gil 2025-09-08T23:03:59,354 Error compiling Cython file: 2025-09-08T23:03:59,354 ------------------------------------------------------------ 2025-09-08T23:03:59,355 ... 2025-09-08T23:03:59,355 self.work2[a, :] = v2[3*ai : 3*(ai+1)] 2025-09-08T23:03:59,355 dgemv('N', &dim, &dim, &DUNITY, &D2[n, 0, 0, 0, 0], &sD2, 2025-09-08T23:03:59,355 &self.work1[0, 0], &self.sw1, &DZERO, 2025-09-08T23:03:59,355 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,355 res[start + n] = ddot(&dim, &self.work2[0, 0], &self.sw2, 2025-09-08T23:03:59,355 &self.work3[0, 0], &self.sw3) 2025-09-08T23:03:59,355 ^ 2025-09-08T23:03:59,355 ------------------------------------------------------------ 2025-09-08T23:03:59,355 sella/internal/int_classes.pyx:1130:58: Accessing Python attribute not allowed without gil 2025-09-08T23:04:00,006 Traceback (most recent call last): 2025-09-08T23:04:00,008 File "", line 2, in 2025-09-08T23:04:00,008 exec(compile(''' 2025-09-08T23:04:00,009 ~~~~^^^^^^^^^^^^ 2025-09-08T23:04:00,009 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:04:00,009 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:00,009 ...<32 lines>... 2025-09-08T23:04:00,009 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:04:00,009 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:00,009 ''' % ('/tmp/pip-wheel-pdbidudi/sella_f199cb37dd354c22b3880b598f4fa1c9/setup.py',), "", "exec")) 2025-09-08T23:04:00,009 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:00,010 File "", line 35, in 2025-09-08T23:04:00,010 File "/tmp/pip-wheel-pdbidudi/sella_f199cb37dd354c22b3880b598f4fa1c9/setup.py", line 40, in 2025-09-08T23:04:00,010 ext_modules = cythonize(ext_modules, compiler_directives=compdir) 2025-09-08T23:04:00,010 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T23:04:00,010 cythonize_one(*args) 2025-09-08T23:04:00,010 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T23:04:00,010 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T23:04:00,010 raise CompileError(None, pyx_file) 2025-09-08T23:04:00,010 Cython.Compiler.Errors.CompileError: sella/internal/int_classes.pyx 2025-09-08T23:04:00,011 Compiling sella/force_match.pyx because it changed. 2025-09-08T23:04:00,011 Compiling sella/internal/int_eval.pyx because it changed. 2025-09-08T23:04:00,011 Compiling sella/internal/int_find.pyx because it changed. 2025-09-08T23:04:00,011 Compiling sella/internal/int_classes.pyx because it changed. 2025-09-08T23:04:00,011 Compiling sella/utilities/blas.pyx because it changed. 2025-09-08T23:04:00,011 Compiling sella/utilities/math.pyx because it changed. 2025-09-08T23:04:00,011 [1/6] Cythonizing sella/force_match.pyx 2025-09-08T23:04:00,011 [2/6] Cythonizing sella/internal/int_classes.pyx 2025-09-08T23:04:01,063 ERROR: python setup.py egg_info exited with 1 2025-09-08T23:04:01,076 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T23:04:01,076 exec(compile('"'"''"'"''"'"' 2025-09-08T23:04:01,076 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:04:01,076 # 2025-09-08T23:04:01,076 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T23:04:01,076 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T23:04:01,076 # - It provides a clear error message when setuptools is not installed. 2025-09-08T23:04:01,076 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T23:04:01,076 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T23:04:01,076 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T23:04:01,076 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T23:04:01,076 import os, sys, tokenize, traceback 2025-09-08T23:04:01,076 2025-09-08T23:04:01,076 try: 2025-09-08T23:04:01,076 import setuptools 2025-09-08T23:04:01,076 except ImportError: 2025-09-08T23:04:01,076 print( 2025-09-08T23:04:01,076 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T23:04:01,076 "the build environment with exception:", 2025-09-08T23:04:01,076 file=sys.stderr, 2025-09-08T23:04:01,076 ) 2025-09-08T23:04:01,076 traceback.print_exc() 2025-09-08T23:04:01,076 sys.exit(1) 2025-09-08T23:04:01,076 2025-09-08T23:04:01,076 __file__ = %r 2025-09-08T23:04:01,076 sys.argv[0] = __file__ 2025-09-08T23:04:01,076 2025-09-08T23:04:01,076 if os.path.exists(__file__): 2025-09-08T23:04:01,076 filename = __file__ 2025-09-08T23:04:01,076 with tokenize.open(__file__) as f: 2025-09-08T23:04:01,076 setup_py_code = f.read() 2025-09-08T23:04:01,076 else: 2025-09-08T23:04:01,076 filename = "" 2025-09-08T23:04:01,076 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T23:04:01,076 2025-09-08T23:04:01,076 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:04:01,076 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-pdbidudi/sella_f199cb37dd354c22b3880b598f4fa1c9/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-p_7vuhle[/] 2025-09-08T23:04:01,076 [bold magenta]cwd[/]: /tmp/pip-wheel-pdbidudi/sella_f199cb37dd354c22b3880b598f4fa1c9/ 2025-09-08T23:04:01,076 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T23:04:01,077 ERROR: metadata generation failed 2025-09-08T23:04:01,082 Exception information: 2025-09-08T23:04:01,082 Traceback (most recent call last): 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T23:04:01,082 call_subprocess( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 args, 2025-09-08T23:04:01,082 ^^^^^ 2025-09-08T23:04:01,082 ...<2 lines>... 2025-09-08T23:04:01,082 spinner=spinner, 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T23:04:01,082 raise error 2025-09-08T23:04:01,082 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T23:04:01,082 2025-09-08T23:04:01,082 The above exception was the direct cause of the following exception: 2025-09-08T23:04:01,082 2025-09-08T23:04:01,082 Traceback (most recent call last): 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T23:04:01,082 status = _inner_run() 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T23:04:01,082 return self.run(options, args) 2025-09-08T23:04:01,082 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T23:04:01,082 return func(self, options, args) 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T23:04:01,082 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T23:04:01,082 result = self._result = resolver.resolve( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T23:04:01,082 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T23:04:01,082 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T23:04:01,082 if not criterion.candidates: 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T23:04:01,082 return bool(self._sequence) 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T23:04:01,082 self._bool = any(self) 2025-09-08T23:04:01,082 ~~~^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T23:04:01,082 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T23:04:01,082 ^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T23:04:01,082 candidate = func() 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T23:04:01,082 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 link, template, name, version 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T23:04:01,082 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 link, 2025-09-08T23:04:01,082 ^^^^^ 2025-09-08T23:04:01,082 ...<3 lines>... 2025-09-08T23:04:01,082 version=version, 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T23:04:01,082 super().__init__( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 link=link, 2025-09-08T23:04:01,082 ^^^^^^^^^^ 2025-09-08T23:04:01,082 ...<4 lines>... 2025-09-08T23:04:01,082 version=version, 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T23:04:01,082 self.dist = self._prepare() 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T23:04:01,082 dist = self._prepare_distribution() 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T23:04:01,082 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T23:04:01,082 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T23:04:01,082 dist = _get_prepared_distribution( 2025-09-08T23:04:01,082 req, 2025-09-08T23:04:01,082 ...<3 lines>... 2025-09-08T23:04:01,082 self.check_build_deps, 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T23:04:01,082 abstract_dist.prepare_distribution_metadata( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 finder, build_isolation, check_build_deps 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T23:04:01,082 self.req.prepare_metadata() 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T23:04:01,082 self.metadata_directory = generate_metadata_legacy( 2025-09-08T23:04:01,082 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:04:01,082 build_env=self.build_env, 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ...<3 lines>... 2025-09-08T23:04:01,082 details=details, 2025-09-08T23:04:01,082 ^^^^^^^^^^^^^^^^ 2025-09-08T23:04:01,082 ) 2025-09-08T23:04:01,082 ^ 2025-09-08T23:04:01,082 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T23:04:01,082 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T23:04:01,082 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T23:04:01,103 Removed sella==1.0.0 from https://files.pythonhosted.org/packages/67/22/3f973084ce70e6522920dc0b63747c8fd28b26f8b25e4882a919a201b3d6/Sella-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-pewpa7xv' 2025-09-08T23:04:01,104 Removed build tracker: '/tmp/pip-build-tracker-pewpa7xv'