2025-09-08T23:10:17,428 Created temporary directory: /tmp/pip-build-tracker-okbf4dh8 2025-09-08T23:10:17,429 Initialized build tracking at /tmp/pip-build-tracker-okbf4dh8 2025-09-08T23:10:17,429 Created build tracker: /tmp/pip-build-tracker-okbf4dh8 2025-09-08T23:10:17,429 Entered build tracker: /tmp/pip-build-tracker-okbf4dh8 2025-09-08T23:10:17,429 Created temporary directory: /tmp/pip-wheel-nl7kjm6u 2025-09-08T23:10:17,432 Created temporary directory: /tmp/pip-ephem-wheel-cache-aujqgb0v 2025-09-08T23:10:17,490 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T23:10:17,492 2 location(s) to search for versions of schictools: 2025-09-08T23:10:17,492 * https://pypi.org/simple/schictools/ 2025-09-08T23:10:17,492 * https://www.piwheels.org/simple/schictools/ 2025-09-08T23:10:17,492 Fetching project page and analyzing links: https://pypi.org/simple/schictools/ 2025-09-08T23:10:17,493 Getting page https://pypi.org/simple/schictools/ 2025-09-08T23:10:17,494 Found index url https://pypi.org/simple/ 2025-09-08T23:10:17,563 Fetched page https://pypi.org/simple/schictools/ as application/vnd.pypi.simple.v1+json 2025-09-08T23:10:17,564 Found link https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.1 2025-09-08T23:10:17,564 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/ec/9d17dbb761a4c9708dd4b11039636be052d0046b0e898edf3ef2d82c209d/scHiCTools-0.0.2-py3.7.egg (from https://pypi.org/simple/schictools/) 2025-09-08T23:10:17,564 Found link https://files.pythonhosted.org/packages/7a/d8/f23804803f0290950482e4500fad0f9756707ead98b04cf7218f6366979a/scHiCTools-0.0.2.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.2 2025-09-08T23:10:17,565 Found link https://files.pythonhosted.org/packages/6c/ad/aee71dfca03663492e178e39d23cba1c1f1a7baddd3bbedfcff207d346ca/scHiCTools-0.0.3.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.3 2025-09-08T23:10:17,565 Fetching project page and analyzing links: https://www.piwheels.org/simple/schictools/ 2025-09-08T23:10:17,565 Getting page https://www.piwheels.org/simple/schictools/ 2025-09-08T23:10:17,566 Found index url https://www.piwheels.org/simple/ 2025-09-08T23:10:17,657 Fetched page https://www.piwheels.org/simple/schictools/ as text/html 2025-09-08T23:10:17,658 Skipping link: not a file: https://www.piwheels.org/simple/schictools/ 2025-09-08T23:10:17,659 Skipping link: not a file: https://pypi.org/simple/schictools/ 2025-09-08T23:10:17,683 Given no hashes to check 1 links for project 'schictools': discarding no candidates 2025-09-08T23:10:17,684 Collecting schictools==0.0.2 2025-09-08T23:10:17,685 Created temporary directory: /tmp/pip-unpack-w37b44yp 2025-09-08T23:10:18,131 Downloading scHiCTools-0.0.2.tar.gz (44 kB) 2025-09-08T23:10:18,171 Added schictools==0.0.2 from https://files.pythonhosted.org/packages/7a/d8/f23804803f0290950482e4500fad0f9756707ead98b04cf7218f6366979a/scHiCTools-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-okbf4dh8' 2025-09-08T23:10:18,173 Running setup.py (path:/tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/setup.py) egg_info for package schictools 2025-09-08T23:10:18,173 Created temporary directory: /tmp/pip-pip-egg-info-i758ct_t 2025-09-08T23:10:18,174 Preparing metadata (setup.py): started 2025-09-08T23:10:18,174 Running command python setup.py egg_info 2025-09-08T23:10:18,703 Traceback (most recent call last): 2025-09-08T23:10:18,705 File "", line 2, in 2025-09-08T23:10:18,705 exec(compile(''' 2025-09-08T23:10:18,705 ~~~~^^^^^^^^^^^^ 2025-09-08T23:10:18,705 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:10:18,705 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,706 ...<32 lines>... 2025-09-08T23:10:18,706 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:10:18,706 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,706 ''' % ('/tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/setup.py',), "", "exec")) 2025-09-08T23:10:18,706 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,706 File "", line 35, in 2025-09-08T23:10:18,706 File "/tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/setup.py", line 18, in 2025-09-08T23:10:18,706 install_requires = get_requirements('requirements.txt') 2025-09-08T23:10:18,707 File "/tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/setup.py", line 10, in get_requirements 2025-09-08T23:10:18,707 with open(path, "r") as fh: 2025-09-08T23:10:18,707 ~~~~^^^^^^^^^^^ 2025-09-08T23:10:18,707 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2025-09-08T23:10:18,790 ERROR: python setup.py egg_info exited with 1 2025-09-08T23:10:18,803 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T23:10:18,803 exec(compile('"'"''"'"''"'"' 2025-09-08T23:10:18,803 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:10:18,803 # 2025-09-08T23:10:18,803 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T23:10:18,803 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T23:10:18,803 # - It provides a clear error message when setuptools is not installed. 2025-09-08T23:10:18,803 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T23:10:18,803 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T23:10:18,803 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T23:10:18,803 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T23:10:18,803 import os, sys, tokenize, traceback 2025-09-08T23:10:18,803 2025-09-08T23:10:18,803 try: 2025-09-08T23:10:18,803 import setuptools 2025-09-08T23:10:18,803 except ImportError: 2025-09-08T23:10:18,803 print( 2025-09-08T23:10:18,803 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T23:10:18,803 "the build environment with exception:", 2025-09-08T23:10:18,803 file=sys.stderr, 2025-09-08T23:10:18,803 ) 2025-09-08T23:10:18,803 traceback.print_exc() 2025-09-08T23:10:18,803 sys.exit(1) 2025-09-08T23:10:18,803 2025-09-08T23:10:18,803 __file__ = %r 2025-09-08T23:10:18,803 sys.argv[0] = __file__ 2025-09-08T23:10:18,803 2025-09-08T23:10:18,803 if os.path.exists(__file__): 2025-09-08T23:10:18,803 filename = __file__ 2025-09-08T23:10:18,803 with tokenize.open(__file__) as f: 2025-09-08T23:10:18,803 setup_py_code = f.read() 2025-09-08T23:10:18,803 else: 2025-09-08T23:10:18,803 filename = "" 2025-09-08T23:10:18,803 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T23:10:18,803 2025-09-08T23:10:18,803 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:10:18,803 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-i758ct_t[/] 2025-09-08T23:10:18,803 [bold magenta]cwd[/]: /tmp/pip-wheel-nl7kjm6u/schictools_777d2de23f974c14932958ad7face3cf/ 2025-09-08T23:10:18,803 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T23:10:18,804 ERROR: metadata generation failed 2025-09-08T23:10:18,809 Exception information: 2025-09-08T23:10:18,809 Traceback (most recent call last): 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T23:10:18,809 call_subprocess( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 args, 2025-09-08T23:10:18,809 ^^^^^ 2025-09-08T23:10:18,809 ...<2 lines>... 2025-09-08T23:10:18,809 spinner=spinner, 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T23:10:18,809 raise error 2025-09-08T23:10:18,809 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T23:10:18,809 2025-09-08T23:10:18,809 The above exception was the direct cause of the following exception: 2025-09-08T23:10:18,809 2025-09-08T23:10:18,809 Traceback (most recent call last): 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T23:10:18,809 status = _inner_run() 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T23:10:18,809 return self.run(options, args) 2025-09-08T23:10:18,809 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T23:10:18,809 return func(self, options, args) 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T23:10:18,809 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T23:10:18,809 result = self._result = resolver.resolve( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T23:10:18,809 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T23:10:18,809 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T23:10:18,809 if not criterion.candidates: 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T23:10:18,809 return bool(self._sequence) 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T23:10:18,809 self._bool = any(self) 2025-09-08T23:10:18,809 ~~~^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T23:10:18,809 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T23:10:18,809 ^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T23:10:18,809 candidate = func() 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T23:10:18,809 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 link, template, name, version 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T23:10:18,809 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 link, 2025-09-08T23:10:18,809 ^^^^^ 2025-09-08T23:10:18,809 ...<3 lines>... 2025-09-08T23:10:18,809 version=version, 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T23:10:18,809 super().__init__( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 link=link, 2025-09-08T23:10:18,809 ^^^^^^^^^^ 2025-09-08T23:10:18,809 ...<4 lines>... 2025-09-08T23:10:18,809 version=version, 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T23:10:18,809 self.dist = self._prepare() 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T23:10:18,809 dist = self._prepare_distribution() 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T23:10:18,809 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T23:10:18,809 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T23:10:18,809 dist = _get_prepared_distribution( 2025-09-08T23:10:18,809 req, 2025-09-08T23:10:18,809 ...<3 lines>... 2025-09-08T23:10:18,809 self.check_build_deps, 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T23:10:18,809 abstract_dist.prepare_distribution_metadata( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 finder, build_isolation, check_build_deps 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T23:10:18,809 self.req.prepare_metadata() 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T23:10:18,809 self.metadata_directory = generate_metadata_legacy( 2025-09-08T23:10:18,809 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:10:18,809 build_env=self.build_env, 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ...<3 lines>... 2025-09-08T23:10:18,809 details=details, 2025-09-08T23:10:18,809 ^^^^^^^^^^^^^^^^ 2025-09-08T23:10:18,809 ) 2025-09-08T23:10:18,809 ^ 2025-09-08T23:10:18,809 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T23:10:18,809 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T23:10:18,809 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T23:10:18,830 Removed schictools==0.0.2 from https://files.pythonhosted.org/packages/7a/d8/f23804803f0290950482e4500fad0f9756707ead98b04cf7218f6366979a/scHiCTools-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-okbf4dh8' 2025-09-08T23:10:18,830 Removed build tracker: '/tmp/pip-build-tracker-okbf4dh8'