2025-09-08T23:25:48,136 Created temporary directory: /tmp/pip-build-tracker-uaawnnm4 2025-09-08T23:25:48,136 Initialized build tracking at /tmp/pip-build-tracker-uaawnnm4 2025-09-08T23:25:48,137 Created build tracker: /tmp/pip-build-tracker-uaawnnm4 2025-09-08T23:25:48,137 Entered build tracker: /tmp/pip-build-tracker-uaawnnm4 2025-09-08T23:25:48,137 Created temporary directory: /tmp/pip-wheel-sku4daf7 2025-09-08T23:25:48,140 Created temporary directory: /tmp/pip-ephem-wheel-cache-n28454tn 2025-09-08T23:25:48,201 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T23:25:48,203 2 location(s) to search for versions of camembert-bri: 2025-09-08T23:25:48,203 * https://pypi.org/simple/camembert-bri/ 2025-09-08T23:25:48,203 * https://www.piwheels.org/simple/camembert-bri/ 2025-09-08T23:25:48,203 Fetching project page and analyzing links: https://pypi.org/simple/camembert-bri/ 2025-09-08T23:25:48,204 Getting page https://pypi.org/simple/camembert-bri/ 2025-09-08T23:25:48,205 Found index url https://pypi.org/simple/ 2025-09-08T23:25:48,414 Fetched page https://pypi.org/simple/camembert-bri/ as application/vnd.pypi.simple.v1+json 2025-09-08T23:25:48,418 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/44/90/d5e349f0e8f988d931e34ddd25e40c548c408365d2a9a7da1c86890683c4/camembert_bri-0.0.1-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,418 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/c0/6c/e63d4c0b6d6f28a77baf19763b050dfb873ed76b5c85b8536b024dcaf092/camembert_bri-0.0.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,418 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/84/d8/d43f35f6ff2a7aaaf37b126579ea5fbccca3b0cf486ec4cba2d86d2b8346/camembert_bri-0.0.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,419 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/0e/bb/0cbaa87087e0141153132f7230c359e12ce96a6f652dca0159b3d90a7816/camembert_bri-0.0.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,419 Found link https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz (from https://pypi.org/simple/camembert-bri/), version: 0.0.2 2025-09-08T23:25:48,420 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/d9/67/c4196e4314f1158119bf1b9c8fc03a979b65c28ab93038d2d2d60b87fd9f/camembert_bri-0.0.2-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,420 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/b9/65/8b5649138088ee2f5577d7a52b468fafa6138c5585913004b466bac46136/camembert_bri-0.0.2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,420 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/fe/c9/3b009c45978512a6004fb25d840dedf8920e246d37b0dc4eb98faf43f08a/camembert_bri-0.0.2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,421 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/44/80/fa632a7e595469b98f585d90b905f09f8f876bfeadd18ff8bc98b7a1aa8f/camembert_bri-0.0.2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2025-09-08T23:25:48,421 Fetching project page and analyzing links: https://www.piwheels.org/simple/camembert-bri/ 2025-09-08T23:25:48,422 Getting page https://www.piwheels.org/simple/camembert-bri/ 2025-09-08T23:25:48,424 Found index url https://www.piwheels.org/simple/ 2025-09-08T23:25:48,523 Fetched page https://www.piwheels.org/simple/camembert-bri/ as text/html 2025-09-08T23:25:48,524 Skipping link: not a file: https://www.piwheels.org/simple/camembert-bri/ 2025-09-08T23:25:48,524 Skipping link: not a file: https://pypi.org/simple/camembert-bri/ 2025-09-08T23:25:48,547 Given no hashes to check 1 links for project 'camembert-bri': discarding no candidates 2025-09-08T23:25:48,548 Collecting camembert-bri==0.0.2 2025-09-08T23:25:48,550 Created temporary directory: /tmp/pip-unpack-2du5v7ef 2025-09-08T23:25:48,687 Downloading camembert-bri-0.0.2.tar.gz (58 kB) 2025-09-08T23:25:48,739 Added camembert-bri==0.0.2 from https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-uaawnnm4' 2025-09-08T23:25:48,740 Running setup.py (path:/tmp/pip-wheel-sku4daf7/camembert-bri_ec77171dd8334dce83260e2a0c8ba918/setup.py) egg_info for package camembert-bri 2025-09-08T23:25:48,740 Created temporary directory: /tmp/pip-pip-egg-info-5gqktznf 2025-09-08T23:25:48,741 Preparing metadata (setup.py): started 2025-09-08T23:25:48,741 Running command python setup.py egg_info 2025-09-08T23:25:49,251 Traceback (most recent call last): 2025-09-08T23:25:49,252 File "", line 2, in 2025-09-08T23:25:49,252 exec(compile(''' 2025-09-08T23:25:49,252 ~~~~^^^^^^^^^^^^ 2025-09-08T23:25:49,252 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:25:49,252 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,253 ...<32 lines>... 2025-09-08T23:25:49,253 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:25:49,253 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,253 ''' % ('/tmp/pip-wheel-sku4daf7/camembert-bri_ec77171dd8334dce83260e2a0c8ba918/setup.py',), "", "exec")) 2025-09-08T23:25:49,253 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,253 File "", line 35, in 2025-09-08T23:25:49,253 File "/tmp/pip-wheel-sku4daf7/camembert-bri_ec77171dd8334dce83260e2a0c8ba918/setup.py", line 5, in 2025-09-08T23:25:49,253 import pysam 2025-09-08T23:25:49,253 ModuleNotFoundError: No module named 'pysam' 2025-09-08T23:25:49,337 ERROR: python setup.py egg_info exited with 1 2025-09-08T23:25:49,350 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T23:25:49,350 exec(compile('"'"''"'"''"'"' 2025-09-08T23:25:49,350 # This is -- a caller that pip uses to run setup.py 2025-09-08T23:25:49,350 # 2025-09-08T23:25:49,350 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T23:25:49,350 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T23:25:49,350 # - It provides a clear error message when setuptools is not installed. 2025-09-08T23:25:49,350 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T23:25:49,350 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T23:25:49,350 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T23:25:49,350 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T23:25:49,350 import os, sys, tokenize, traceback 2025-09-08T23:25:49,350 2025-09-08T23:25:49,350 try: 2025-09-08T23:25:49,350 import setuptools 2025-09-08T23:25:49,350 except ImportError: 2025-09-08T23:25:49,350 print( 2025-09-08T23:25:49,350 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T23:25:49,350 "the build environment with exception:", 2025-09-08T23:25:49,350 file=sys.stderr, 2025-09-08T23:25:49,350 ) 2025-09-08T23:25:49,350 traceback.print_exc() 2025-09-08T23:25:49,350 sys.exit(1) 2025-09-08T23:25:49,350 2025-09-08T23:25:49,350 __file__ = %r 2025-09-08T23:25:49,350 sys.argv[0] = __file__ 2025-09-08T23:25:49,350 2025-09-08T23:25:49,350 if os.path.exists(__file__): 2025-09-08T23:25:49,350 filename = __file__ 2025-09-08T23:25:49,350 with tokenize.open(__file__) as f: 2025-09-08T23:25:49,350 setup_py_code = f.read() 2025-09-08T23:25:49,350 else: 2025-09-08T23:25:49,350 filename = "" 2025-09-08T23:25:49,350 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T23:25:49,350 2025-09-08T23:25:49,350 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T23:25:49,350 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sku4daf7/camembert-bri_ec77171dd8334dce83260e2a0c8ba918/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-5gqktznf[/] 2025-09-08T23:25:49,350 [bold magenta]cwd[/]: /tmp/pip-wheel-sku4daf7/camembert-bri_ec77171dd8334dce83260e2a0c8ba918/ 2025-09-08T23:25:49,350 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T23:25:49,351 ERROR: metadata generation failed 2025-09-08T23:25:49,357 Exception information: 2025-09-08T23:25:49,357 Traceback (most recent call last): 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T23:25:49,357 call_subprocess( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 args, 2025-09-08T23:25:49,357 ^^^^^ 2025-09-08T23:25:49,357 ...<2 lines>... 2025-09-08T23:25:49,357 spinner=spinner, 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T23:25:49,357 raise error 2025-09-08T23:25:49,357 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T23:25:49,357 2025-09-08T23:25:49,357 The above exception was the direct cause of the following exception: 2025-09-08T23:25:49,357 2025-09-08T23:25:49,357 Traceback (most recent call last): 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T23:25:49,357 status = _inner_run() 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T23:25:49,357 return self.run(options, args) 2025-09-08T23:25:49,357 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T23:25:49,357 return func(self, options, args) 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T23:25:49,357 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T23:25:49,357 result = self._result = resolver.resolve( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T23:25:49,357 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T23:25:49,357 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T23:25:49,357 if not criterion.candidates: 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T23:25:49,357 return bool(self._sequence) 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T23:25:49,357 self._bool = any(self) 2025-09-08T23:25:49,357 ~~~^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T23:25:49,357 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T23:25:49,357 ^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T23:25:49,357 candidate = func() 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T23:25:49,357 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 link, template, name, version 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T23:25:49,357 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 link, 2025-09-08T23:25:49,357 ^^^^^ 2025-09-08T23:25:49,357 ...<3 lines>... 2025-09-08T23:25:49,357 version=version, 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T23:25:49,357 super().__init__( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 link=link, 2025-09-08T23:25:49,357 ^^^^^^^^^^ 2025-09-08T23:25:49,357 ...<4 lines>... 2025-09-08T23:25:49,357 version=version, 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T23:25:49,357 self.dist = self._prepare() 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T23:25:49,357 dist = self._prepare_distribution() 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T23:25:49,357 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T23:25:49,357 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T23:25:49,357 dist = _get_prepared_distribution( 2025-09-08T23:25:49,357 req, 2025-09-08T23:25:49,357 ...<3 lines>... 2025-09-08T23:25:49,357 self.check_build_deps, 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T23:25:49,357 abstract_dist.prepare_distribution_metadata( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 finder, build_isolation, check_build_deps 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T23:25:49,357 self.req.prepare_metadata() 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T23:25:49,357 self.metadata_directory = generate_metadata_legacy( 2025-09-08T23:25:49,357 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T23:25:49,357 build_env=self.build_env, 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ...<3 lines>... 2025-09-08T23:25:49,357 details=details, 2025-09-08T23:25:49,357 ^^^^^^^^^^^^^^^^ 2025-09-08T23:25:49,357 ) 2025-09-08T23:25:49,357 ^ 2025-09-08T23:25:49,357 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T23:25:49,357 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T23:25:49,357 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T23:25:49,380 Removed camembert-bri==0.0.2 from https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-uaawnnm4' 2025-09-08T23:25:49,380 Removed build tracker: '/tmp/pip-build-tracker-uaawnnm4'