2025-09-08T23:38:30,013 Created temporary directory: /tmp/pip-build-tracker-7_6yf0o1
2025-09-08T23:38:30,014 Initialized build tracking at /tmp/pip-build-tracker-7_6yf0o1
2025-09-08T23:38:30,014 Created build tracker: /tmp/pip-build-tracker-7_6yf0o1
2025-09-08T23:38:30,014 Entered build tracker: /tmp/pip-build-tracker-7_6yf0o1
2025-09-08T23:38:30,014 Created temporary directory: /tmp/pip-wheel-r1166gd6
2025-09-08T23:38:30,018 Created temporary directory: /tmp/pip-ephem-wheel-cache-72fj39pa
2025-09-08T23:38:30,074 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T23:38:30,077 2 location(s) to search for versions of segmentation-phenix:
2025-09-08T23:38:30,077 * https://pypi.org/simple/segmentation-phenix/
2025-09-08T23:38:30,077 * https://www.piwheels.org/simple/segmentation-phenix/
2025-09-08T23:38:30,077 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2025-09-08T23:38:30,078 Getting page https://pypi.org/simple/segmentation-phenix/
2025-09-08T23:38:30,079 Found index url https://pypi.org/simple/
2025-09-08T23:38:30,223 Fetched page https://pypi.org/simple/segmentation-phenix/ as application/vnd.pypi.simple.v1+json
2025-09-08T23:38:30,226   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2025-09-08T23:38:30,227   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2025-09-08T23:38:30,228   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2025-09-08T23:38:30,228   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2025-09-08T23:38:30,228   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2025-09-08T23:38:30,229   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2025-09-08T23:38:30,229   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2025-09-08T23:38:30,230   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2025-09-08T23:38:30,231 Fetching project page and analyzing links: https://www.piwheels.org/simple/segmentation-phenix/
2025-09-08T23:38:30,231 Getting page https://www.piwheels.org/simple/segmentation-phenix/
2025-09-08T23:38:30,233 Found index url https://www.piwheels.org/simple/
2025-09-08T23:38:30,333 Fetched page https://www.piwheels.org/simple/segmentation-phenix/ as text/html
2025-09-08T23:38:30,334 Skipping link: not a file: https://www.piwheels.org/simple/segmentation-phenix/
2025-09-08T23:38:30,334 Skipping link: not a file: https://pypi.org/simple/segmentation-phenix/
2025-09-08T23:38:30,361 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2025-09-08T23:38:30,362 Collecting segmentation-phenix==0.1.0
2025-09-08T23:38:30,363   Created temporary directory: /tmp/pip-unpack-advybziw
2025-09-08T23:38:30,796   Downloading segmentation_phenix-0.1.0.tar.gz (17 kB)
2025-09-08T23:38:30,825   Added segmentation-phenix==0.1.0 from https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-7_6yf0o1'
2025-09-08T23:38:30,826   Running setup.py (path:/tmp/pip-wheel-r1166gd6/segmentation-phenix_4d0ff1c39d61439a892660f1c62dcab1/setup.py) egg_info for package segmentation-phenix
2025-09-08T23:38:30,826   Created temporary directory: /tmp/pip-pip-egg-info-8dy0s16a
2025-09-08T23:38:30,826   Preparing metadata (setup.py): started
2025-09-08T23:38:30,827   Running command python setup.py egg_info
2025-09-08T23:38:31,667   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:31,667   !!

2025-09-08T23:38:31,667           ********************************************************************************
2025-09-08T23:38:31,668           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:31,668           versions. Please use the underscore name 'description_file' instead.

2025-09-08T23:38:31,668           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:31,668           or your builds will no longer be supported.

2025-09-08T23:38:31,668           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:31,668           ********************************************************************************

2025-09-08T23:38:31,668   !!
2025-09-08T23:38:31,668     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:32,116   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:32,117   !!

2025-09-08T23:38:32,117           ********************************************************************************
2025-09-08T23:38:32,117           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:32,117           versions. Please use the underscore name 'description_file' instead.
2025-09-08T23:38:32,117           (Affected: segmentation_phenix).

2025-09-08T23:38:32,117           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:32,117           or your builds will no longer be supported.

2025-09-08T23:38:32,118           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:32,118           ********************************************************************************

2025-09-08T23:38:32,118   !!
2025-09-08T23:38:32,118     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:32,193   running egg_info
2025-09-08T23:38:32,269   creating /tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info
2025-09-08T23:38:32,269   writing /tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/PKG-INFO
2025-09-08T23:38:32,270   writing dependency_links to /tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/dependency_links.txt
2025-09-08T23:38:32,271   writing requirements to /tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/requires.txt
2025-09-08T23:38:32,271   writing top-level names to /tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/top_level.txt
2025-09-08T23:38:32,272   writing manifest file '/tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/SOURCES.txt'
2025-09-08T23:38:32,498   reading manifest file '/tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/SOURCES.txt'
2025-09-08T23:38:32,499   reading manifest template 'MANIFEST.in'
2025-09-08T23:38:32,500   warning: no files found matching '*' under directory 'data'
2025-09-08T23:38:32,501   adding license file 'LICENSE'
2025-09-08T23:38:32,503   writing manifest file '/tmp/pip-pip-egg-info-8dy0s16a/segmentation_phenix.egg-info/SOURCES.txt'
2025-09-08T23:38:32,639   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T23:38:32,644   Source in /tmp/pip-wheel-r1166gd6/segmentation-phenix_4d0ff1c39d61439a892660f1c62dcab1 has version 0.1.0, which satisfies requirement segmentation-phenix==0.1.0 from https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz
2025-09-08T23:38:32,644   Removed segmentation-phenix==0.1.0 from https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-7_6yf0o1'
2025-09-08T23:38:32,647 Created temporary directory: /tmp/pip-unpack-hdbzrbqj
2025-09-08T23:38:32,648 Created temporary directory: /tmp/pip-unpack-13ph9yuo
2025-09-08T23:38:32,648 Building wheels for collected packages: segmentation-phenix
2025-09-08T23:38:32,649   Created temporary directory: /tmp/pip-wheel-saq1gw7t
2025-09-08T23:38:32,649   DEPRECATION: Building 'segmentation-phenix' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'segmentation-phenix'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T23:38:32,651   Building wheel for segmentation-phenix (setup.py): started
2025-09-08T23:38:32,651   Destination directory: /tmp/pip-wheel-saq1gw7t
2025-09-08T23:38:32,651   Running command python setup.py bdist_wheel
2025-09-08T23:38:33,494   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:33,494   !!

2025-09-08T23:38:33,494           ********************************************************************************
2025-09-08T23:38:33,494           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:33,494           versions. Please use the underscore name 'description_file' instead.

2025-09-08T23:38:33,494           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:33,494           or your builds will no longer be supported.

2025-09-08T23:38:33,495           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:33,495           ********************************************************************************

2025-09-08T23:38:33,495   !!
2025-09-08T23:38:33,495     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:33,937   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:33,937   !!

2025-09-08T23:38:33,937           ********************************************************************************
2025-09-08T23:38:33,937           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:33,937           versions. Please use the underscore name 'description_file' instead.
2025-09-08T23:38:33,937           (Affected: segmentation_phenix).

2025-09-08T23:38:33,938           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:33,938           or your builds will no longer be supported.

2025-09-08T23:38:33,938           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:33,938           ********************************************************************************

2025-09-08T23:38:33,938   !!
2025-09-08T23:38:33,938     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:33,941   running bdist_wheel
2025-09-08T23:38:34,229   running build
2025-09-08T23:38:34,230   running build_py
2025-09-08T23:38:34,307   creating build/lib.linux-armv7l-cpython-313/segmentation_phenix
2025-09-08T23:38:34,308   copying segmentation_phenix/__init__.py -> build/lib.linux-armv7l-cpython-313/segmentation_phenix
2025-09-08T23:38:34,309   running build_ext
2025-09-08T23:38:34,731   Compiling segmentation_phenix/segmentation.pyx because it changed.
2025-09-08T23:38:34,732   [1/1] Cythonizing segmentation_phenix/segmentation.pyx
2025-09-08T23:38:37,828   building 'segmentation_phenix.segmentation' extension
2025-09-08T23:38:37,829   creating build/temp.linux-armv7l-cpython-313/segmentation_phenix
2025-09-08T23:38:37,829   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include -I/usr/include/python3.13 -c segmentation_phenix/segmentation.cpp -o build/temp.linux-armv7l-cpython-313/segmentation_phenix/segmentation.o -march=native -std=c++11 -DNDEBUG -Ofast -Wcpp
2025-09-08T23:38:38,133   In file included from segmentation_phenix/segmentation.cpp:1179:
2025-09-08T23:38:38,133   segmentation_phenix/fastmm.cpp:1:10: fatal error: boost/multi_array.hpp: No such file or directory
2025-09-08T23:38:38,133       1 | #include <boost/multi_array.hpp>
2025-09-08T23:38:38,133         |          ^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T23:38:38,133   compilation terminated.
2025-09-08T23:38:38,136   error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1
2025-09-08T23:38:38,660   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T23:38:38,672   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T23:38:38,672   exec(compile('"'"''"'"''"'"'
2025-09-08T23:38:38,672   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T23:38:38,672   #
2025-09-08T23:38:38,672   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T23:38:38,672   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T23:38:38,672   # - It provides a clear error message when setuptools is not installed.
2025-09-08T23:38:38,672   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T23:38:38,672   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T23:38:38,672   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T23:38:38,672   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T23:38:38,672   import os, sys, tokenize, traceback
2025-09-08T23:38:38,672   
2025-09-08T23:38:38,672   try:
2025-09-08T23:38:38,672       import setuptools
2025-09-08T23:38:38,672   except ImportError:
2025-09-08T23:38:38,672       print(
2025-09-08T23:38:38,672           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T23:38:38,672           "the build environment with exception:",
2025-09-08T23:38:38,672           file=sys.stderr,
2025-09-08T23:38:38,672       )
2025-09-08T23:38:38,672       traceback.print_exc()
2025-09-08T23:38:38,672       sys.exit(1)
2025-09-08T23:38:38,672   
2025-09-08T23:38:38,672   __file__ = %r
2025-09-08T23:38:38,672   sys.argv[0] = __file__
2025-09-08T23:38:38,672   
2025-09-08T23:38:38,672   if os.path.exists(__file__):
2025-09-08T23:38:38,672       filename = __file__
2025-09-08T23:38:38,672       with tokenize.open(__file__) as f:
2025-09-08T23:38:38,672           setup_py_code = f.read()
2025-09-08T23:38:38,672   else:
2025-09-08T23:38:38,672       filename = "<auto-generated setuptools caller>"
2025-09-08T23:38:38,672       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T23:38:38,672   
2025-09-08T23:38:38,672   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T23:38:38,672   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-r1166gd6/segmentation-phenix_4d0ff1c39d61439a892660f1c62dcab1/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-saq1gw7t[/]
2025-09-08T23:38:38,672   [bold magenta]cwd[/]: /tmp/pip-wheel-r1166gd6/segmentation-phenix_4d0ff1c39d61439a892660f1c62dcab1/
2025-09-08T23:38:38,672   Building wheel for segmentation-phenix (setup.py): finished with status 'error'
2025-09-08T23:38:38,673   ERROR: Failed building wheel for segmentation-phenix
2025-09-08T23:38:38,673   Running setup.py clean for segmentation-phenix
2025-09-08T23:38:38,674   Running command python setup.py clean
2025-09-08T23:38:39,529   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:39,529   !!

2025-09-08T23:38:39,529           ********************************************************************************
2025-09-08T23:38:39,529           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:39,529           versions. Please use the underscore name 'description_file' instead.

2025-09-08T23:38:39,529           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:39,529           or your builds will no longer be supported.

2025-09-08T23:38:39,530           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:39,530           ********************************************************************************

2025-09-08T23:38:39,530   !!
2025-09-08T23:38:39,530     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:39,974   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T23:38:39,975   !!

2025-09-08T23:38:39,975           ********************************************************************************
2025-09-08T23:38:39,975           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T23:38:39,975           versions. Please use the underscore name 'description_file' instead.
2025-09-08T23:38:39,975           (Affected: segmentation_phenix).

2025-09-08T23:38:39,975           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T23:38:39,975           or your builds will no longer be supported.

2025-09-08T23:38:39,976           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T23:38:39,976           ********************************************************************************

2025-09-08T23:38:39,976   !!
2025-09-08T23:38:39,976     opt = self._enforce_underscore(opt, section)
2025-09-08T23:38:40,052   running clean
2025-09-08T23:38:40,198   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T23:38:40,199   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T23:38:40,199   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T23:38:40,199   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T23:38:40,199   removing 'build'
2025-09-08T23:38:40,333 Failed to build segmentation-phenix
2025-09-08T23:38:40,334 ERROR: Failed to build one or more wheels
2025-09-08T23:38:40,335 Exception information:
2025-09-08T23:38:40,335 Traceback (most recent call last):
2025-09-08T23:38:40,335   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T23:38:40,335     status = _inner_run()
2025-09-08T23:38:40,335   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T23:38:40,335     return self.run(options, args)
2025-09-08T23:38:40,335            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T23:38:40,335   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T23:38:40,335     return func(self, options, args)
2025-09-08T23:38:40,335   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T23:38:40,335     raise CommandError("Failed to build one or more wheels")
2025-09-08T23:38:40,335 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T23:38:40,340 Removed build tracker: '/tmp/pip-build-tracker-7_6yf0o1'