2025-09-09T00:03:55,073 Created temporary directory: /tmp/pip-build-tracker-hkijwlhf 2025-09-09T00:03:55,073 Initialized build tracking at /tmp/pip-build-tracker-hkijwlhf 2025-09-09T00:03:55,073 Created build tracker: /tmp/pip-build-tracker-hkijwlhf 2025-09-09T00:03:55,073 Entered build tracker: /tmp/pip-build-tracker-hkijwlhf 2025-09-09T00:03:55,074 Created temporary directory: /tmp/pip-wheel-wt8yr1x8 2025-09-09T00:03:55,077 Created temporary directory: /tmp/pip-ephem-wheel-cache-sb7l1nec 2025-09-09T00:03:55,134 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T00:03:55,136 2 location(s) to search for versions of gff3tool: 2025-09-09T00:03:55,136 * https://pypi.org/simple/gff3tool/ 2025-09-09T00:03:55,136 * https://www.piwheels.org/simple/gff3tool/ 2025-09-09T00:03:55,137 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2025-09-09T00:03:55,137 Getting page https://pypi.org/simple/gff3tool/ 2025-09-09T00:03:55,138 Found index url https://pypi.org/simple/ 2025-09-09T00:03:55,208 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2025-09-09T00:03:55,209 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2025-09-09T00:03:55,210 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2025-09-09T00:03:55,210 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2025-09-09T00:03:55,210 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2025-09-09T00:03:55,210 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2025-09-09T00:03:55,211 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2025-09-09T00:03:55,211 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2025-09-09T00:03:55,211 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2025-09-09T00:03:55,211 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2025-09-09T00:03:55,211 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2025-09-09T00:03:55,212 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2025-09-09T00:03:55,212 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2025-09-09T00:03:55,212 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2025-09-09T00:03:55,212 Getting page https://www.piwheels.org/simple/gff3tool/ 2025-09-09T00:03:55,213 Found index url https://www.piwheels.org/simple/ 2025-09-09T00:03:55,309 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,320 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,320 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,320 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,320 Skipping link: No binaries permitted for gff3tool: 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https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,321 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,321 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,321 Skipping link: No binaries permitted for gff3tool: 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(from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,323 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-09T00:03:55,324 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2025-09-09T00:03:55,324 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2025-09-09T00:03:55,350 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2025-09-09T00:03:55,352 Collecting gff3tool==2.0.1 2025-09-09T00:03:55,353 Created temporary directory: /tmp/pip-unpack-iy3mxg6d 2025-09-09T00:03:55,517 Downloading gff3tool-2.0.1.tar.gz (79 kB) 2025-09-09T00:03:55,591 Added gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-hkijwlhf' 2025-09-09T00:03:55,592 Running setup.py (path:/tmp/pip-wheel-wt8yr1x8/gff3tool_c8bc5d733a5f43b9ac2c3b157b9c4773/setup.py) egg_info for package gff3tool 2025-09-09T00:03:55,593 Created temporary directory: /tmp/pip-pip-egg-info-70nanoed 2025-09-09T00:03:55,593 Preparing metadata (setup.py): started 2025-09-09T00:03:55,594 Running command python setup.py egg_info 2025-09-09T00:03:56,251 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:56,251 !! 2025-09-09T00:03:56,251 ******************************************************************************** 2025-09-09T00:03:56,251 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:03:56,251 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:56,252 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:03:56,252 or your builds will no longer be supported. 2025-09-09T00:03:56,252 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:03:56,252 ******************************************************************************** 2025-09-09T00:03:56,252 !! 2025-09-09T00:03:56,252 opt = self._enforce_underscore(opt, section) 2025-09-09T00:03:56,688 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:56,688 !! 2025-09-09T00:03:56,689 ******************************************************************************** 2025-09-09T00:03:56,689 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:03:56,689 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:56,689 (Affected: gff3tool). 2025-09-09T00:03:56,689 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:03:56,689 or your builds will no longer be supported. 2025-09-09T00:03:56,689 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:03:56,690 ******************************************************************************** 2025-09-09T00:03:56,690 !! 2025-09-09T00:03:56,690 opt = self._enforce_underscore(opt, section) 2025-09-09T00:03:56,690 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:03:56,690 !! 2025-09-09T00:03:56,690 ******************************************************************************** 2025-09-09T00:03:56,690 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:03:56,690 License :: Public Domain 2025-09-09T00:03:56,691 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:03:56,691 ******************************************************************************** 2025-09-09T00:03:56,691 !! 2025-09-09T00:03:56,691 self._finalize_license_expression() 2025-09-09T00:03:56,761 running egg_info 2025-09-09T00:03:56,838 creating /tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info 2025-09-09T00:03:56,838 writing /tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/PKG-INFO 2025-09-09T00:03:56,839 writing dependency_links to /tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/dependency_links.txt 2025-09-09T00:03:56,840 writing entry points to /tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/entry_points.txt 2025-09-09T00:03:56,840 writing top-level names to /tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/top_level.txt 2025-09-09T00:03:56,841 writing manifest file '/tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/SOURCES.txt' 2025-09-09T00:03:56,999 reading manifest file '/tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/SOURCES.txt' 2025-09-09T00:03:57,000 reading manifest template 'MANIFEST.in' 2025-09-09T00:03:57,005 writing manifest file '/tmp/pip-pip-egg-info-70nanoed/gff3tool.egg-info/SOURCES.txt' 2025-09-09T00:03:57,118 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T00:03:57,123 Source in /tmp/pip-wheel-wt8yr1x8/gff3tool_c8bc5d733a5f43b9ac2c3b157b9c4773 has version 2.0.1, which satisfies requirement gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz 2025-09-09T00:03:57,124 Removed gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-hkijwlhf' 2025-09-09T00:03:57,128 Created temporary directory: /tmp/pip-unpack-5foscw1l 2025-09-09T00:03:57,128 Created temporary directory: /tmp/pip-unpack-hvo3ahfg 2025-09-09T00:03:57,128 Building wheels for collected packages: gff3tool 2025-09-09T00:03:57,130 Created temporary directory: /tmp/pip-wheel-jiuryn3g 2025-09-09T00:03:57,130 DEPRECATION: Building 'gff3tool' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'gff3tool'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T00:03:57,131 Building wheel for gff3tool (setup.py): started 2025-09-09T00:03:57,132 Destination directory: /tmp/pip-wheel-jiuryn3g 2025-09-09T00:03:57,132 Running command python setup.py bdist_wheel 2025-09-09T00:03:57,784 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:57,784 !! 2025-09-09T00:03:57,785 ******************************************************************************** 2025-09-09T00:03:57,785 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:03:57,785 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:57,785 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:03:57,785 or your builds will no longer be supported. 2025-09-09T00:03:57,785 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:03:57,785 ******************************************************************************** 2025-09-09T00:03:57,785 !! 2025-09-09T00:03:57,786 opt = self._enforce_underscore(opt, section) 2025-09-09T00:03:58,212 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:58,213 !! 2025-09-09T00:03:58,213 ******************************************************************************** 2025-09-09T00:03:58,213 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:03:58,213 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:03:58,213 (Affected: gff3tool). 2025-09-09T00:03:58,213 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:03:58,213 or your builds will no longer be supported. 2025-09-09T00:03:58,213 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:03:58,214 ******************************************************************************** 2025-09-09T00:03:58,214 !! 2025-09-09T00:03:58,214 opt = self._enforce_underscore(opt, section) 2025-09-09T00:03:58,214 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:03:58,214 !! 2025-09-09T00:03:58,214 ******************************************************************************** 2025-09-09T00:03:58,214 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:03:58,215 License :: Public Domain 2025-09-09T00:03:58,215 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:03:58,215 ******************************************************************************** 2025-09-09T00:03:58,215 !! 2025-09-09T00:03:58,215 self._finalize_license_expression() 2025-09-09T00:03:58,215 running bdist_wheel 2025-09-09T00:03:58,511 running build 2025-09-09T00:04:15,325 /tmp/pip-wheel-wt8yr1x8/gff3tool_c8bc5d733a5f43b9ac2c3b157b9c4773/setup.py:62: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 2025-09-09T00:04:15,325 tar.extractall(blast_path) 2025-09-09T00:04:16,294 error: [Errno 28] No space left on device 2025-09-09T00:04:16,414 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T00:04:16,426 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T00:04:16,426 exec(compile('"'"''"'"''"'"' 2025-09-09T00:04:16,426 # This is -- a caller that pip uses to run setup.py 2025-09-09T00:04:16,426 # 2025-09-09T00:04:16,426 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T00:04:16,426 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T00:04:16,426 # - It provides a clear error message when setuptools is not installed. 2025-09-09T00:04:16,426 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T00:04:16,426 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T00:04:16,426 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T00:04:16,426 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T00:04:16,426 import os, sys, tokenize, traceback 2025-09-09T00:04:16,426 2025-09-09T00:04:16,426 try: 2025-09-09T00:04:16,426 import setuptools 2025-09-09T00:04:16,426 except ImportError: 2025-09-09T00:04:16,426 print( 2025-09-09T00:04:16,426 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T00:04:16,426 "the build environment with exception:", 2025-09-09T00:04:16,426 file=sys.stderr, 2025-09-09T00:04:16,426 ) 2025-09-09T00:04:16,426 traceback.print_exc() 2025-09-09T00:04:16,426 sys.exit(1) 2025-09-09T00:04:16,426 2025-09-09T00:04:16,426 __file__ = %r 2025-09-09T00:04:16,426 sys.argv[0] = __file__ 2025-09-09T00:04:16,426 2025-09-09T00:04:16,426 if os.path.exists(__file__): 2025-09-09T00:04:16,426 filename = __file__ 2025-09-09T00:04:16,426 with tokenize.open(__file__) as f: 2025-09-09T00:04:16,426 setup_py_code = f.read() 2025-09-09T00:04:16,426 else: 2025-09-09T00:04:16,426 filename = "" 2025-09-09T00:04:16,426 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T00:04:16,426 2025-09-09T00:04:16,426 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T00:04:16,426 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wt8yr1x8/gff3tool_c8bc5d733a5f43b9ac2c3b157b9c4773/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-jiuryn3g[/] 2025-09-09T00:04:16,426 [bold magenta]cwd[/]: /tmp/pip-wheel-wt8yr1x8/gff3tool_c8bc5d733a5f43b9ac2c3b157b9c4773/ 2025-09-09T00:04:16,436 Building wheel for gff3tool (setup.py): finished with status 'error' 2025-09-09T00:04:16,441 ERROR: Failed building wheel for gff3tool 2025-09-09T00:04:16,445 Running setup.py clean for gff3tool 2025-09-09T00:04:16,448 Running command python setup.py clean 2025-09-09T00:04:17,115 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:04:17,117 !! 2025-09-09T00:04:17,122 ******************************************************************************** 2025-09-09T00:04:17,125 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:04:17,128 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:04:17,133 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:04:17,135 or your builds will no longer be supported. 2025-09-09T00:04:17,140 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:04:17,142 ******************************************************************************** 2025-09-09T00:04:17,147 !! 2025-09-09T00:04:17,149 opt = self._enforce_underscore(opt, section) 2025-09-09T00:04:17,542 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-09T00:04:17,544 !! 2025-09-09T00:04:17,549 ******************************************************************************** 2025-09-09T00:04:17,551 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-09T00:04:17,554 versions. Please use the underscore name 'dist_dir' instead. 2025-09-09T00:04:17,556 (Affected: gff3tool). 2025-09-09T00:04:17,561 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-09T00:04:17,563 or your builds will no longer be supported. 2025-09-09T00:04:17,568 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-09T00:04:17,570 ******************************************************************************** 2025-09-09T00:04:17,574 !! 2025-09-09T00:04:17,576 opt = self._enforce_underscore(opt, section) 2025-09-09T00:04:17,578 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:04:17,581 !! 2025-09-09T00:04:17,585 ******************************************************************************** 2025-09-09T00:04:17,587 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:04:17,592 License :: Public Domain 2025-09-09T00:04:17,596 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:04:17,598 ******************************************************************************** 2025-09-09T00:04:17,602 !! 2025-09-09T00:04:17,605 self._finalize_license_expression() 2025-09-09T00:04:17,624 running clean 2025-09-09T00:04:17,697 'build/lib' does not exist -- can't clean it 2025-09-09T00:04:17,700 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T00:04:17,703 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T00:04:17,811 Failed to build gff3tool 2025-09-09T00:04:17,814 ERROR: Failed to build one or more wheels 2025-09-09T00:04:17,822 Removed build tracker: '/tmp/pip-build-tracker-hkijwlhf'