2025-09-09T00:35:17,422 Created temporary directory: /tmp/pip-build-tracker-qf_jc3w1 2025-09-09T00:35:17,423 Initialized build tracking at /tmp/pip-build-tracker-qf_jc3w1 2025-09-09T00:35:17,423 Created build tracker: /tmp/pip-build-tracker-qf_jc3w1 2025-09-09T00:35:17,423 Entered build tracker: /tmp/pip-build-tracker-qf_jc3w1 2025-09-09T00:35:17,424 Created temporary directory: /tmp/pip-wheel-3s7fx1pt 2025-09-09T00:35:17,427 Created temporary directory: /tmp/pip-ephem-wheel-cache-v_qaa0ce 2025-09-09T00:35:17,484 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T00:35:17,487 2 location(s) to search for versions of lightdock: 2025-09-09T00:35:17,487 * https://pypi.org/simple/lightdock/ 2025-09-09T00:35:17,487 * https://www.piwheels.org/simple/lightdock/ 2025-09-09T00:35:17,487 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-09T00:35:17,487 Getting page https://pypi.org/simple/lightdock/ 2025-09-09T00:35:17,488 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(requires-python:>=3.5) 2025-09-09T00:35:17,565 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-09T00:35:17,566 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,566 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-09T00:35:17,566 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,695 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,695 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,695 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,695 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T00:35:17,696 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-09T00:35:17,696 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-09T00:35:17,720 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-09T00:35:17,721 Collecting lightdock==0.8.0b2 2025-09-09T00:35:17,722 Created temporary directory: /tmp/pip-unpack-buv41h0o 2025-09-09T00:35:18,123 Downloading lightdock-0.8.0b2.tar.gz (32.8 MB) 2025-09-09T00:35:27,582 Added lightdock==0.8.0b2 from https://files.pythonhosted.org/packages/d1/53/11b4c5d0877095b413865cae39b4a7c1db93867b00d750d6b54d0f178b3c/lightdock-0.8.0b2.tar.gz to build tracker '/tmp/pip-build-tracker-qf_jc3w1' 2025-09-09T00:35:27,583 Running setup.py (path:/tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/setup.py) egg_info for package lightdock 2025-09-09T00:35:27,583 Created temporary directory: /tmp/pip-pip-egg-info-63ueep0u 2025-09-09T00:35:27,583 Preparing metadata (setup.py): started 2025-09-09T00:35:27,584 Running command python setup.py egg_info 2025-09-09T00:35:28,113 /tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T00:35:28,113 !! 2025-09-09T00:35:28,113 ******************************************************************************** 2025-09-09T00:35:28,113 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T00:35:28,114 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T00:35:28,114 calls to avoid build errors in the future. 2025-09-09T00:35:28,114 ******************************************************************************** 2025-09-09T00:35:28,114 !! 2025-09-09T00:35:28,114 from setuptools.command.test import test as TestCommand 2025-09-09T00:35:28,477 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T00:35:28,477 !! 2025-09-09T00:35:28,478 ******************************************************************************** 2025-09-09T00:35:28,478 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T00:35:28,478 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T00:35:28,478 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T00:35:28,478 or your builds will no longer be supported. 2025-09-09T00:35:28,478 ******************************************************************************** 2025-09-09T00:35:28,478 !! 2025-09-09T00:35:28,478 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T00:35:31,565 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:35:31,565 !! 2025-09-09T00:35:31,565 ******************************************************************************** 2025-09-09T00:35:31,565 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:35:31,565 License :: Free For Educational Use 2025-09-09T00:35:31,566 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:35:31,566 ******************************************************************************** 2025-09-09T00:35:31,566 !! 2025-09-09T00:35:31,566 self._finalize_license_expression() 2025-09-09T00:35:31,641 running egg_info 2025-09-09T00:35:31,717 creating /tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info 2025-09-09T00:35:31,717 writing /tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/PKG-INFO 2025-09-09T00:35:31,718 writing dependency_links to /tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/dependency_links.txt 2025-09-09T00:35:31,719 writing requirements to /tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/requires.txt 2025-09-09T00:35:31,720 writing top-level names to /tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/top_level.txt 2025-09-09T00:35:31,720 writing manifest file '/tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/SOURCES.txt' 2025-09-09T00:35:32,130 reading manifest file '/tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/SOURCES.txt' 2025-09-09T00:35:32,131 reading manifest template 'MANIFEST.in' 2025-09-09T00:35:32,206 adding license file 'LICENSE' 2025-09-09T00:35:32,243 writing manifest file '/tmp/pip-pip-egg-info-63ueep0u/lightdock.egg-info/SOURCES.txt' 2025-09-09T00:35:32,381 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T00:35:32,386 Source in /tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f has version 0.8.0b2, which satisfies requirement lightdock==0.8.0b2 from https://files.pythonhosted.org/packages/d1/53/11b4c5d0877095b413865cae39b4a7c1db93867b00d750d6b54d0f178b3c/lightdock-0.8.0b2.tar.gz 2025-09-09T00:35:32,386 Removed lightdock==0.8.0b2 from https://files.pythonhosted.org/packages/d1/53/11b4c5d0877095b413865cae39b4a7c1db93867b00d750d6b54d0f178b3c/lightdock-0.8.0b2.tar.gz from build tracker '/tmp/pip-build-tracker-qf_jc3w1' 2025-09-09T00:35:32,393 Created temporary directory: /tmp/pip-unpack-k1xfg68e 2025-09-09T00:35:32,393 Created temporary directory: /tmp/pip-unpack-xodwhk3s 2025-09-09T00:35:32,393 Building wheels for collected packages: lightdock 2025-09-09T00:35:32,395 Created temporary directory: /tmp/pip-wheel-g0ldgdsj 2025-09-09T00:35:32,395 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T00:35:32,396 Building wheel for lightdock (setup.py): started 2025-09-09T00:35:32,397 Destination directory: /tmp/pip-wheel-g0ldgdsj 2025-09-09T00:35:32,397 Running command python setup.py bdist_wheel 2025-09-09T00:35:32,926 /tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T00:35:32,926 !! 2025-09-09T00:35:32,926 ******************************************************************************** 2025-09-09T00:35:32,926 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T00:35:32,926 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T00:35:32,927 calls to avoid build errors in the future. 2025-09-09T00:35:32,927 ******************************************************************************** 2025-09-09T00:35:32,927 !! 2025-09-09T00:35:32,927 from setuptools.command.test import test as TestCommand 2025-09-09T00:35:33,274 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T00:35:33,274 !! 2025-09-09T00:35:33,274 ******************************************************************************** 2025-09-09T00:35:33,274 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T00:35:33,275 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T00:35:33,275 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T00:35:33,275 or your builds will no longer be supported. 2025-09-09T00:35:33,275 ******************************************************************************** 2025-09-09T00:35:33,275 !! 2025-09-09T00:35:33,275 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T00:35:34,151 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:35:34,152 !! 2025-09-09T00:35:34,152 ******************************************************************************** 2025-09-09T00:35:34,152 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:35:34,152 License :: Free For Educational Use 2025-09-09T00:35:34,152 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:35:34,152 ******************************************************************************** 2025-09-09T00:35:34,153 !! 2025-09-09T00:35:34,153 self._finalize_license_expression() 2025-09-09T00:35:34,153 running bdist_wheel 2025-09-09T00:35:34,539 running build 2025-09-09T00:35:34,539 running build_py 2025-09-09T00:35:34,619 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T00:35:34,619 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T00:35:34,620 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T00:35:34,620 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T00:35:34,621 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,621 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,622 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,623 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,623 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,624 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,624 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T00:35:34,625 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T00:35:34,625 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T00:35:34,626 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,626 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,627 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,627 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,628 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,628 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,629 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,629 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,630 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T00:35:34,630 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T00:35:34,631 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T00:35:34,631 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T00:35:34,632 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T00:35:34,633 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T00:35:34,633 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T00:35:34,633 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T00:35:34,634 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T00:35:34,634 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T00:35:34,635 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T00:35:34,635 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T00:35:34,636 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T00:35:34,636 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T00:35:34,637 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,637 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,638 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,638 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,639 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,639 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,640 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T00:35:34,641 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T00:35:34,641 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T00:35:34,641 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T00:35:34,642 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T00:35:34,642 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T00:35:34,643 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T00:35:34,643 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T00:35:34,644 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T00:35:34,644 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T00:35:34,645 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T00:35:34,645 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T00:35:34,646 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T00:35:34,647 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,647 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,647 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,648 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,649 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,649 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,650 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,650 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,651 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T00:35:34,651 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T00:35:34,652 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T00:35:34,652 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T00:35:34,653 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T00:35:34,653 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T00:35:34,654 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T00:35:34,654 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,655 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,655 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,656 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,656 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,657 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,657 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,658 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T00:35:34,659 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,659 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,659 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,660 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,661 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,661 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,662 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,662 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,663 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,663 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,664 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T00:35:34,664 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T00:35:34,665 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T00:35:34,665 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T00:35:34,666 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,666 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,667 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,667 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,668 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,668 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,669 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T00:35:34,669 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T00:35:34,670 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T00:35:34,670 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T00:35:34,671 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,671 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,672 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,672 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,673 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,673 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,674 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,674 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T00:35:34,675 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,676 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,676 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,677 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,677 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,678 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,678 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,679 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,679 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,680 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,681 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T00:35:34,681 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T00:35:34,681 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T00:35:34,682 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T00:35:34,683 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,683 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,684 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,684 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,685 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,685 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,686 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,686 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,687 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,687 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,688 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,688 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,689 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,689 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T00:35:34,690 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,690 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,691 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,692 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,692 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,693 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,693 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,694 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,694 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,695 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T00:35:34,696 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,696 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,696 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,697 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,697 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,698 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,698 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,699 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,700 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,700 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,701 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,701 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T00:35:34,702 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T00:35:34,702 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T00:35:34,703 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T00:35:34,703 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T00:35:34,703 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T00:35:34,704 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T00:35:34,705 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T00:35:34,705 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T00:35:34,705 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T00:35:34,706 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T00:35:34,706 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T00:35:34,707 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T00:35:34,708 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T00:35:34,708 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T00:35:34,708 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T00:35:34,709 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T00:35:34,709 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T00:35:34,710 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T00:35:34,711 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T00:35:34,711 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T00:35:34,711 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T00:35:34,712 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T00:35:34,712 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T00:35:34,713 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T00:35:34,714 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T00:35:34,714 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T00:35:34,714 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T00:35:34,715 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T00:35:34,715 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T00:35:34,716 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T00:35:34,717 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T00:35:34,717 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T00:35:34,717 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T00:35:34,718 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T00:35:34,718 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T00:35:34,719 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T00:35:34,720 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T00:35:34,720 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T00:35:34,721 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T00:35:34,721 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T00:35:34,721 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T00:35:34,723 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T00:35:34,723 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T00:35:34,724 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T00:35:34,724 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T00:35:34,725 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T00:35:34,725 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T00:35:34,726 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T00:35:34,726 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T00:35:34,726 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T00:35:34,727 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T00:35:34,728 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T00:35:34,728 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T00:35:34,729 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T00:35:34,729 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T00:35:34,729 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T00:35:34,731 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T00:35:34,731 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T00:35:34,731 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T00:35:34,732 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T00:35:34,733 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T00:35:34,733 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T00:35:34,733 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T00:35:34,734 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T00:35:34,734 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T00:35:34,735 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T00:35:34,736 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T00:35:34,736 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T00:35:34,736 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T00:35:34,737 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T00:35:34,737 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T00:35:34,738 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T00:35:34,739 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T00:35:34,740 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T00:35:34,740 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T00:35:34,741 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T00:35:34,741 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T00:35:34,741 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T00:35:34,742 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T00:35:34,743 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T00:35:34,743 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T00:35:34,743 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T00:35:34,744 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T00:35:34,744 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T00:35:34,745 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T00:35:34,746 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T00:35:34,746 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T00:35:34,746 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T00:35:34,747 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T00:35:34,747 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T00:35:34,748 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T00:35:34,748 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T00:35:34,750 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T00:35:34,750 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T00:35:34,751 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T00:35:34,751 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T00:35:34,752 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:34,752 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:34,753 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:34,753 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T00:35:34,754 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T00:35:34,754 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T00:35:34,755 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T00:35:34,755 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T00:35:34,756 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:34,756 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:34,757 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:34,757 running egg_info 2025-09-09T00:35:34,832 writing lightdock.egg-info/PKG-INFO 2025-09-09T00:35:34,833 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-09T00:35:34,834 writing requirements to lightdock.egg-info/requires.txt 2025-09-09T00:35:34,834 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-09T00:35:34,939 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T00:35:35,006 reading manifest template 'MANIFEST.in' 2025-09-09T00:35:35,081 adding license file 'LICENSE' 2025-09-09T00:35:35,136 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T00:35:35,138 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-09T00:35:35,138 !! 2025-09-09T00:35:35,139 ******************************************************************************** 2025-09-09T00:35:35,139 ############################ 2025-09-09T00:35:35,139 # Package would be ignored # 2025-09-09T00:35:35,139 ############################ 2025-09-09T00:35:35,139 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-09T00:35:35,139 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,139 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,139 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-09T00:35:35,140 to the `packages` configuration field. 2025-09-09T00:35:35,140 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,140 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,140 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,140 If you don't want 'lightdock.etc' to be distributed and are 2025-09-09T00:35:35,140 already explicitly excluding 'lightdock.etc' via 2025-09-09T00:35:35,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,141 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,141 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,141 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,141 even if it does not contain any `.py` files. 2025-09-09T00:35:35,141 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,142 directory, all directories are treated like packages. 2025-09-09T00:35:35,142 ******************************************************************************** 2025-09-09T00:35:35,142 !! 2025-09-09T00:35:35,142 check.warn(importable) 2025-09-09T00:35:35,142 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,142 !! 2025-09-09T00:35:35,142 ******************************************************************************** 2025-09-09T00:35:35,142 ############################ 2025-09-09T00:35:35,143 # Package would be ignored # 2025-09-09T00:35:35,143 ############################ 2025-09-09T00:35:35,143 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-09T00:35:35,143 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,143 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,143 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-09T00:35:35,143 to the `packages` configuration field. 2025-09-09T00:35:35,143 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,143 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,144 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,144 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-09T00:35:35,144 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-09T00:35:35,144 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,144 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,144 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,144 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,145 even if it does not contain any `.py` files. 2025-09-09T00:35:35,145 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,145 directory, all directories are treated like packages. 2025-09-09T00:35:35,145 ******************************************************************************** 2025-09-09T00:35:35,145 !! 2025-09-09T00:35:35,145 check.warn(importable) 2025-09-09T00:35:35,146 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,146 !! 2025-09-09T00:35:35,146 ******************************************************************************** 2025-09-09T00:35:35,146 ############################ 2025-09-09T00:35:35,146 # Package would be ignored # 2025-09-09T00:35:35,146 ############################ 2025-09-09T00:35:35,146 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-09T00:35:35,146 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,146 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,147 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-09T00:35:35,147 to the `packages` configuration field. 2025-09-09T00:35:35,147 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,147 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,147 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,147 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,148 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-09T00:35:35,148 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-09T00:35:35,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,148 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,148 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,148 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,149 even if it does not contain any `.py` files. 2025-09-09T00:35:35,149 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,149 directory, all directories are treated like packages. 2025-09-09T00:35:35,149 ******************************************************************************** 2025-09-09T00:35:35,149 !! 2025-09-09T00:35:35,149 check.warn(importable) 2025-09-09T00:35:35,149 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,149 !! 2025-09-09T00:35:35,149 ******************************************************************************** 2025-09-09T00:35:35,150 ############################ 2025-09-09T00:35:35,150 # Package would be ignored # 2025-09-09T00:35:35,150 ############################ 2025-09-09T00:35:35,150 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-09T00:35:35,150 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,150 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,150 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-09T00:35:35,150 to the `packages` configuration field. 2025-09-09T00:35:35,150 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,151 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,151 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,151 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-09T00:35:35,151 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-09T00:35:35,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,151 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,152 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,152 even if it does not contain any `.py` files. 2025-09-09T00:35:35,152 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,152 directory, all directories are treated like packages. 2025-09-09T00:35:35,152 ******************************************************************************** 2025-09-09T00:35:35,152 !! 2025-09-09T00:35:35,153 check.warn(importable) 2025-09-09T00:35:35,153 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,153 !! 2025-09-09T00:35:35,153 ******************************************************************************** 2025-09-09T00:35:35,153 ############################ 2025-09-09T00:35:35,153 # Package would be ignored # 2025-09-09T00:35:35,153 ############################ 2025-09-09T00:35:35,153 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-09T00:35:35,153 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,153 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,154 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-09T00:35:35,154 to the `packages` configuration field. 2025-09-09T00:35:35,154 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,154 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,154 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,154 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-09T00:35:35,155 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-09T00:35:35,155 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,155 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,155 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,155 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,155 even if it does not contain any `.py` files. 2025-09-09T00:35:35,156 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,156 directory, all directories are treated like packages. 2025-09-09T00:35:35,156 ******************************************************************************** 2025-09-09T00:35:35,156 !! 2025-09-09T00:35:35,156 check.warn(importable) 2025-09-09T00:35:35,156 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,156 !! 2025-09-09T00:35:35,156 ******************************************************************************** 2025-09-09T00:35:35,156 ############################ 2025-09-09T00:35:35,157 # Package would be ignored # 2025-09-09T00:35:35,157 ############################ 2025-09-09T00:35:35,157 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-09T00:35:35,157 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,157 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,157 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-09T00:35:35,157 to the `packages` configuration field. 2025-09-09T00:35:35,157 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,157 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,157 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,158 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,158 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-09T00:35:35,158 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-09T00:35:35,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,158 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,158 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,159 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,159 even if it does not contain any `.py` files. 2025-09-09T00:35:35,159 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,159 directory, all directories are treated like packages. 2025-09-09T00:35:35,159 ******************************************************************************** 2025-09-09T00:35:35,159 !! 2025-09-09T00:35:35,160 check.warn(importable) 2025-09-09T00:35:35,160 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-09T00:35:35,160 !! 2025-09-09T00:35:35,160 ******************************************************************************** 2025-09-09T00:35:35,160 ############################ 2025-09-09T00:35:35,160 # Package would be ignored # 2025-09-09T00:35:35,160 ############################ 2025-09-09T00:35:35,160 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-09T00:35:35,160 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,160 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,161 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-09T00:35:35,161 to the `packages` configuration field. 2025-09-09T00:35:35,161 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,161 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,161 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,161 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-09T00:35:35,161 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-09T00:35:35,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,162 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,162 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,162 even if it does not contain any `.py` files. 2025-09-09T00:35:35,162 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,163 directory, all directories are treated like packages. 2025-09-09T00:35:35,163 ******************************************************************************** 2025-09-09T00:35:35,163 !! 2025-09-09T00:35:35,163 check.warn(importable) 2025-09-09T00:35:35,163 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,163 !! 2025-09-09T00:35:35,163 ******************************************************************************** 2025-09-09T00:35:35,163 ############################ 2025-09-09T00:35:35,163 # Package would be ignored # 2025-09-09T00:35:35,163 ############################ 2025-09-09T00:35:35,164 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-09T00:35:35,164 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,164 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,164 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-09T00:35:35,164 to the `packages` configuration field. 2025-09-09T00:35:35,164 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,164 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,164 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,164 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,165 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-09T00:35:35,165 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-09T00:35:35,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,165 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,165 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,166 even if it does not contain any `.py` files. 2025-09-09T00:35:35,166 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,166 directory, all directories are treated like packages. 2025-09-09T00:35:35,166 ******************************************************************************** 2025-09-09T00:35:35,166 !! 2025-09-09T00:35:35,166 check.warn(importable) 2025-09-09T00:35:35,166 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,166 !! 2025-09-09T00:35:35,167 ******************************************************************************** 2025-09-09T00:35:35,167 ############################ 2025-09-09T00:35:35,167 # Package would be ignored # 2025-09-09T00:35:35,167 ############################ 2025-09-09T00:35:35,167 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-09T00:35:35,167 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,167 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,167 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-09T00:35:35,167 to the `packages` configuration field. 2025-09-09T00:35:35,167 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,168 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,168 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,168 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-09T00:35:35,168 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-09T00:35:35,168 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,168 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,169 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,169 even if it does not contain any `.py` files. 2025-09-09T00:35:35,169 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,169 directory, all directories are treated like packages. 2025-09-09T00:35:35,169 ******************************************************************************** 2025-09-09T00:35:35,170 !! 2025-09-09T00:35:35,170 check.warn(importable) 2025-09-09T00:35:35,170 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,170 !! 2025-09-09T00:35:35,170 ******************************************************************************** 2025-09-09T00:35:35,170 ############################ 2025-09-09T00:35:35,170 # Package would be ignored # 2025-09-09T00:35:35,170 ############################ 2025-09-09T00:35:35,170 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,171 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,171 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,171 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-09T00:35:35,171 to the `packages` configuration field. 2025-09-09T00:35:35,171 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,171 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,171 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,172 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,172 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-09T00:35:35,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,172 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,172 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,172 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,173 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,173 even if it does not contain any `.py` files. 2025-09-09T00:35:35,173 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,173 directory, all directories are treated like packages. 2025-09-09T00:35:35,173 ******************************************************************************** 2025-09-09T00:35:35,173 !! 2025-09-09T00:35:35,173 check.warn(importable) 2025-09-09T00:35:35,173 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T00:35:35,173 !! 2025-09-09T00:35:35,173 ******************************************************************************** 2025-09-09T00:35:35,174 ############################ 2025-09-09T00:35:35,174 # Package would be ignored # 2025-09-09T00:35:35,174 ############################ 2025-09-09T00:35:35,174 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-09T00:35:35,174 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,174 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,174 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-09T00:35:35,174 to the `packages` configuration field. 2025-09-09T00:35:35,174 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,174 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,175 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,175 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,175 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,175 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-09T00:35:35,175 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-09T00:35:35,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,175 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,175 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,175 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,176 even if it does not contain any `.py` files. 2025-09-09T00:35:35,176 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,176 directory, all directories are treated like packages. 2025-09-09T00:35:35,176 ******************************************************************************** 2025-09-09T00:35:35,176 !! 2025-09-09T00:35:35,176 check.warn(importable) 2025-09-09T00:35:35,177 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T00:35:35,177 !! 2025-09-09T00:35:35,177 ******************************************************************************** 2025-09-09T00:35:35,177 ############################ 2025-09-09T00:35:35,177 # Package would be ignored # 2025-09-09T00:35:35,177 ############################ 2025-09-09T00:35:35,177 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-09T00:35:35,177 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,177 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,177 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-09T00:35:35,177 to the `packages` configuration field. 2025-09-09T00:35:35,178 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,178 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,178 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,178 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-09T00:35:35,178 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-09T00:35:35,178 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,179 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,179 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,179 even if it does not contain any `.py` files. 2025-09-09T00:35:35,179 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,179 directory, all directories are treated like packages. 2025-09-09T00:35:35,180 ******************************************************************************** 2025-09-09T00:35:35,180 !! 2025-09-09T00:35:35,180 check.warn(importable) 2025-09-09T00:35:35,180 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T00:35:35,180 !! 2025-09-09T00:35:35,180 ******************************************************************************** 2025-09-09T00:35:35,180 ############################ 2025-09-09T00:35:35,180 # Package would be ignored # 2025-09-09T00:35:35,180 ############################ 2025-09-09T00:35:35,180 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-09T00:35:35,181 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,181 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,181 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-09T00:35:35,181 to the `packages` configuration field. 2025-09-09T00:35:35,181 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,181 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,181 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,182 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-09T00:35:35,182 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-09T00:35:35,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,182 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,182 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,183 even if it does not contain any `.py` files. 2025-09-09T00:35:35,183 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,183 directory, all directories are treated like packages. 2025-09-09T00:35:35,183 ******************************************************************************** 2025-09-09T00:35:35,183 !! 2025-09-09T00:35:35,183 check.warn(importable) 2025-09-09T00:35:35,183 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T00:35:35,183 !! 2025-09-09T00:35:35,184 ******************************************************************************** 2025-09-09T00:35:35,184 ############################ 2025-09-09T00:35:35,184 # Package would be ignored # 2025-09-09T00:35:35,184 ############################ 2025-09-09T00:35:35,184 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-09T00:35:35,184 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,184 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,184 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-09T00:35:35,184 to the `packages` configuration field. 2025-09-09T00:35:35,185 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,185 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,185 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,185 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-09T00:35:35,185 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-09T00:35:35,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,186 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,186 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,186 even if it does not contain any `.py` files. 2025-09-09T00:35:35,186 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,186 directory, all directories are treated like packages. 2025-09-09T00:35:35,186 ******************************************************************************** 2025-09-09T00:35:35,187 !! 2025-09-09T00:35:35,187 check.warn(importable) 2025-09-09T00:35:35,187 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,187 !! 2025-09-09T00:35:35,187 ******************************************************************************** 2025-09-09T00:35:35,187 ############################ 2025-09-09T00:35:35,187 # Package would be ignored # 2025-09-09T00:35:35,187 ############################ 2025-09-09T00:35:35,187 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-09T00:35:35,187 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,188 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,188 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-09T00:35:35,188 to the `packages` configuration field. 2025-09-09T00:35:35,188 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,188 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,188 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,189 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-09T00:35:35,189 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-09T00:35:35,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,189 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,189 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,189 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,190 even if it does not contain any `.py` files. 2025-09-09T00:35:35,190 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,190 directory, all directories are treated like packages. 2025-09-09T00:35:35,190 ******************************************************************************** 2025-09-09T00:35:35,190 !! 2025-09-09T00:35:35,190 check.warn(importable) 2025-09-09T00:35:35,190 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,190 !! 2025-09-09T00:35:35,190 ******************************************************************************** 2025-09-09T00:35:35,190 ############################ 2025-09-09T00:35:35,191 # Package would be ignored # 2025-09-09T00:35:35,191 ############################ 2025-09-09T00:35:35,191 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,191 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,191 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,191 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-09T00:35:35,191 to the `packages` configuration field. 2025-09-09T00:35:35,191 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,191 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,192 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,192 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-09T00:35:35,192 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-09T00:35:35,192 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,192 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,192 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,193 even if it does not contain any `.py` files. 2025-09-09T00:35:35,193 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,193 directory, all directories are treated like packages. 2025-09-09T00:35:35,193 ******************************************************************************** 2025-09-09T00:35:35,193 !! 2025-09-09T00:35:35,194 check.warn(importable) 2025-09-09T00:35:35,194 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,194 !! 2025-09-09T00:35:35,194 ******************************************************************************** 2025-09-09T00:35:35,194 ############################ 2025-09-09T00:35:35,194 # Package would be ignored # 2025-09-09T00:35:35,194 ############################ 2025-09-09T00:35:35,194 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,194 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,194 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,195 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,195 to the `packages` configuration field. 2025-09-09T00:35:35,195 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,195 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,195 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,195 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,196 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,196 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-09T00:35:35,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,196 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,196 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,196 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,196 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,197 even if it does not contain any `.py` files. 2025-09-09T00:35:35,197 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,197 directory, all directories are treated like packages. 2025-09-09T00:35:35,197 ******************************************************************************** 2025-09-09T00:35:35,197 !! 2025-09-09T00:35:35,197 check.warn(importable) 2025-09-09T00:35:35,197 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,197 !! 2025-09-09T00:35:35,197 ******************************************************************************** 2025-09-09T00:35:35,198 ############################ 2025-09-09T00:35:35,198 # Package would be ignored # 2025-09-09T00:35:35,198 ############################ 2025-09-09T00:35:35,198 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-09T00:35:35,198 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,198 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,198 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-09T00:35:35,198 to the `packages` configuration field. 2025-09-09T00:35:35,198 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,198 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,199 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,199 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,199 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-09T00:35:35,199 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-09T00:35:35,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,199 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,199 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,199 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,200 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,200 even if it does not contain any `.py` files. 2025-09-09T00:35:35,200 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,200 directory, all directories are treated like packages. 2025-09-09T00:35:35,200 ******************************************************************************** 2025-09-09T00:35:35,200 !! 2025-09-09T00:35:35,200 check.warn(importable) 2025-09-09T00:35:35,201 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,201 !! 2025-09-09T00:35:35,201 ******************************************************************************** 2025-09-09T00:35:35,201 ############################ 2025-09-09T00:35:35,201 # Package would be ignored # 2025-09-09T00:35:35,201 ############################ 2025-09-09T00:35:35,201 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-09T00:35:35,201 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,201 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,201 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-09T00:35:35,202 to the `packages` configuration field. 2025-09-09T00:35:35,202 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,202 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,202 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,202 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,202 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-09T00:35:35,202 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-09T00:35:35,203 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,203 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,203 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,203 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,203 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,203 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,203 even if it does not contain any `.py` files. 2025-09-09T00:35:35,203 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,203 directory, all directories are treated like packages. 2025-09-09T00:35:35,204 ******************************************************************************** 2025-09-09T00:35:35,204 !! 2025-09-09T00:35:35,204 check.warn(importable) 2025-09-09T00:35:35,204 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,204 !! 2025-09-09T00:35:35,204 ******************************************************************************** 2025-09-09T00:35:35,204 ############################ 2025-09-09T00:35:35,204 # Package would be ignored # 2025-09-09T00:35:35,204 ############################ 2025-09-09T00:35:35,204 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,205 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,205 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,205 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-09T00:35:35,205 to the `packages` configuration field. 2025-09-09T00:35:35,205 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,205 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,205 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,206 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,206 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-09T00:35:35,206 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,206 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,206 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,206 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,206 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,207 even if it does not contain any `.py` files. 2025-09-09T00:35:35,207 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,207 directory, all directories are treated like packages. 2025-09-09T00:35:35,207 ******************************************************************************** 2025-09-09T00:35:35,207 !! 2025-09-09T00:35:35,207 check.warn(importable) 2025-09-09T00:35:35,207 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,208 !! 2025-09-09T00:35:35,208 ******************************************************************************** 2025-09-09T00:35:35,208 ############################ 2025-09-09T00:35:35,208 # Package would be ignored # 2025-09-09T00:35:35,208 ############################ 2025-09-09T00:35:35,208 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-09T00:35:35,208 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,208 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,208 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-09T00:35:35,208 to the `packages` configuration field. 2025-09-09T00:35:35,209 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,209 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,209 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,209 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-09T00:35:35,209 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-09T00:35:35,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,210 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,210 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,210 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,210 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,210 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,210 even if it does not contain any `.py` files. 2025-09-09T00:35:35,210 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,210 directory, all directories are treated like packages. 2025-09-09T00:35:35,211 ******************************************************************************** 2025-09-09T00:35:35,211 !! 2025-09-09T00:35:35,211 check.warn(importable) 2025-09-09T00:35:35,211 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,211 !! 2025-09-09T00:35:35,211 ******************************************************************************** 2025-09-09T00:35:35,211 ############################ 2025-09-09T00:35:35,211 # Package would be ignored # 2025-09-09T00:35:35,211 ############################ 2025-09-09T00:35:35,211 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-09T00:35:35,211 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,212 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,212 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-09T00:35:35,212 to the `packages` configuration field. 2025-09-09T00:35:35,212 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,212 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,212 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,213 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-09T00:35:35,213 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-09T00:35:35,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,213 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,213 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,213 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,214 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,214 even if it does not contain any `.py` files. 2025-09-09T00:35:35,214 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,214 directory, all directories are treated like packages. 2025-09-09T00:35:35,214 ******************************************************************************** 2025-09-09T00:35:35,214 !! 2025-09-09T00:35:35,214 check.warn(importable) 2025-09-09T00:35:35,214 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,214 !! 2025-09-09T00:35:35,214 ******************************************************************************** 2025-09-09T00:35:35,214 ############################ 2025-09-09T00:35:35,215 # Package would be ignored # 2025-09-09T00:35:35,215 ############################ 2025-09-09T00:35:35,215 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,215 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,215 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,215 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-09T00:35:35,215 to the `packages` configuration field. 2025-09-09T00:35:35,215 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,215 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,215 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,216 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,216 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,216 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,216 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-09T00:35:35,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,216 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,216 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,217 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,217 even if it does not contain any `.py` files. 2025-09-09T00:35:35,217 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,217 directory, all directories are treated like packages. 2025-09-09T00:35:35,217 ******************************************************************************** 2025-09-09T00:35:35,217 !! 2025-09-09T00:35:35,217 check.warn(importable) 2025-09-09T00:35:35,217 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T00:35:35,218 !! 2025-09-09T00:35:35,218 ******************************************************************************** 2025-09-09T00:35:35,218 ############################ 2025-09-09T00:35:35,218 # Package would be ignored # 2025-09-09T00:35:35,218 ############################ 2025-09-09T00:35:35,218 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-09T00:35:35,218 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,218 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,218 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-09T00:35:35,219 to the `packages` configuration field. 2025-09-09T00:35:35,219 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,219 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,219 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,219 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-09T00:35:35,219 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-09T00:35:35,220 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,220 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,220 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,220 even if it does not contain any `.py` files. 2025-09-09T00:35:35,220 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,221 directory, all directories are treated like packages. 2025-09-09T00:35:35,221 ******************************************************************************** 2025-09-09T00:35:35,221 !! 2025-09-09T00:35:35,221 check.warn(importable) 2025-09-09T00:35:35,221 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T00:35:35,221 !! 2025-09-09T00:35:35,221 ******************************************************************************** 2025-09-09T00:35:35,221 ############################ 2025-09-09T00:35:35,221 # Package would be ignored # 2025-09-09T00:35:35,221 ############################ 2025-09-09T00:35:35,222 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-09T00:35:35,222 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,222 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,222 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-09T00:35:35,222 to the `packages` configuration field. 2025-09-09T00:35:35,222 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,222 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,222 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,223 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-09T00:35:35,223 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-09T00:35:35,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,223 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,223 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,224 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,224 even if it does not contain any `.py` files. 2025-09-09T00:35:35,224 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,224 directory, all directories are treated like packages. 2025-09-09T00:35:35,224 ******************************************************************************** 2025-09-09T00:35:35,224 !! 2025-09-09T00:35:35,224 check.warn(importable) 2025-09-09T00:35:35,224 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T00:35:35,224 !! 2025-09-09T00:35:35,225 ******************************************************************************** 2025-09-09T00:35:35,225 ############################ 2025-09-09T00:35:35,225 # Package would be ignored # 2025-09-09T00:35:35,225 ############################ 2025-09-09T00:35:35,225 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-09T00:35:35,225 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,225 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,225 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-09T00:35:35,225 to the `packages` configuration field. 2025-09-09T00:35:35,225 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,226 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,226 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,226 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,226 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-09T00:35:35,226 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-09T00:35:35,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,226 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,227 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,227 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,227 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,227 even if it does not contain any `.py` files. 2025-09-09T00:35:35,227 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,227 directory, all directories are treated like packages. 2025-09-09T00:35:35,227 ******************************************************************************** 2025-09-09T00:35:35,227 !! 2025-09-09T00:35:35,228 check.warn(importable) 2025-09-09T00:35:35,228 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T00:35:35,228 !! 2025-09-09T00:35:35,228 ******************************************************************************** 2025-09-09T00:35:35,228 ############################ 2025-09-09T00:35:35,228 # Package would be ignored # 2025-09-09T00:35:35,228 ############################ 2025-09-09T00:35:35,228 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-09T00:35:35,228 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,228 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,228 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-09T00:35:35,229 to the `packages` configuration field. 2025-09-09T00:35:35,229 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,229 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,229 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,229 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-09T00:35:35,230 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-09T00:35:35,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,230 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,230 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,230 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,230 even if it does not contain any `.py` files. 2025-09-09T00:35:35,231 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,231 directory, all directories are treated like packages. 2025-09-09T00:35:35,231 ******************************************************************************** 2025-09-09T00:35:35,231 !! 2025-09-09T00:35:35,231 check.warn(importable) 2025-09-09T00:35:35,231 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,231 !! 2025-09-09T00:35:35,231 ******************************************************************************** 2025-09-09T00:35:35,231 ############################ 2025-09-09T00:35:35,232 # Package would be ignored # 2025-09-09T00:35:35,232 ############################ 2025-09-09T00:35:35,232 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-09T00:35:35,232 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,232 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,232 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-09T00:35:35,232 to the `packages` configuration field. 2025-09-09T00:35:35,232 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,232 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,233 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,233 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,233 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-09T00:35:35,233 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-09T00:35:35,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,233 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,233 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,233 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,234 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,234 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,234 even if it does not contain any `.py` files. 2025-09-09T00:35:35,234 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,234 directory, all directories are treated like packages. 2025-09-09T00:35:35,234 ******************************************************************************** 2025-09-09T00:35:35,234 !! 2025-09-09T00:35:35,234 check.warn(importable) 2025-09-09T00:35:35,234 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,235 !! 2025-09-09T00:35:35,235 ******************************************************************************** 2025-09-09T00:35:35,235 ############################ 2025-09-09T00:35:35,235 # Package would be ignored # 2025-09-09T00:35:35,235 ############################ 2025-09-09T00:35:35,235 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-09T00:35:35,235 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,235 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,235 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-09T00:35:35,235 to the `packages` configuration field. 2025-09-09T00:35:35,236 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,236 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,236 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,236 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,236 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,236 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-09T00:35:35,236 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-09T00:35:35,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,237 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,237 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,237 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,237 even if it does not contain any `.py` files. 2025-09-09T00:35:35,237 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,237 directory, all directories are treated like packages. 2025-09-09T00:35:35,237 ******************************************************************************** 2025-09-09T00:35:35,238 !! 2025-09-09T00:35:35,238 check.warn(importable) 2025-09-09T00:35:35,238 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,238 !! 2025-09-09T00:35:35,238 ******************************************************************************** 2025-09-09T00:35:35,238 ############################ 2025-09-09T00:35:35,238 # Package would be ignored # 2025-09-09T00:35:35,238 ############################ 2025-09-09T00:35:35,238 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,238 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,239 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,239 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-09T00:35:35,239 to the `packages` configuration field. 2025-09-09T00:35:35,239 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,239 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,239 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,239 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,240 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,240 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-09T00:35:35,240 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,240 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,240 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,240 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,240 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,240 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,241 even if it does not contain any `.py` files. 2025-09-09T00:35:35,241 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,241 directory, all directories are treated like packages. 2025-09-09T00:35:35,241 ******************************************************************************** 2025-09-09T00:35:35,241 !! 2025-09-09T00:35:35,241 check.warn(importable) 2025-09-09T00:35:35,241 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,241 !! 2025-09-09T00:35:35,241 ******************************************************************************** 2025-09-09T00:35:35,241 ############################ 2025-09-09T00:35:35,242 # Package would be ignored # 2025-09-09T00:35:35,242 ############################ 2025-09-09T00:35:35,242 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-09T00:35:35,242 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,242 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,242 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-09T00:35:35,242 to the `packages` configuration field. 2025-09-09T00:35:35,242 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,242 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,243 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,243 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,243 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-09T00:35:35,243 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-09T00:35:35,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,243 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,243 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,244 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,244 even if it does not contain any `.py` files. 2025-09-09T00:35:35,244 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,244 directory, all directories are treated like packages. 2025-09-09T00:35:35,244 ******************************************************************************** 2025-09-09T00:35:35,244 !! 2025-09-09T00:35:35,245 check.warn(importable) 2025-09-09T00:35:35,245 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,245 !! 2025-09-09T00:35:35,245 ******************************************************************************** 2025-09-09T00:35:35,245 ############################ 2025-09-09T00:35:35,245 # Package would be ignored # 2025-09-09T00:35:35,245 ############################ 2025-09-09T00:35:35,245 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,245 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,245 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,246 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-09T00:35:35,246 to the `packages` configuration field. 2025-09-09T00:35:35,246 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,246 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,246 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,246 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,246 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-09T00:35:35,246 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-09T00:35:35,247 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,247 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,247 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,247 even if it does not contain any `.py` files. 2025-09-09T00:35:35,248 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,248 directory, all directories are treated like packages. 2025-09-09T00:35:35,248 ******************************************************************************** 2025-09-09T00:35:35,248 !! 2025-09-09T00:35:35,248 check.warn(importable) 2025-09-09T00:35:35,248 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,248 !! 2025-09-09T00:35:35,248 ******************************************************************************** 2025-09-09T00:35:35,248 ############################ 2025-09-09T00:35:35,248 # Package would be ignored # 2025-09-09T00:35:35,249 ############################ 2025-09-09T00:35:35,249 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,249 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,249 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,249 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,249 to the `packages` configuration field. 2025-09-09T00:35:35,249 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,249 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,249 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,250 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,250 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,250 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-09T00:35:35,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,250 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,250 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,251 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,251 even if it does not contain any `.py` files. 2025-09-09T00:35:35,251 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,251 directory, all directories are treated like packages. 2025-09-09T00:35:35,251 ******************************************************************************** 2025-09-09T00:35:35,251 !! 2025-09-09T00:35:35,251 check.warn(importable) 2025-09-09T00:35:35,251 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,252 !! 2025-09-09T00:35:35,252 ******************************************************************************** 2025-09-09T00:35:35,252 ############################ 2025-09-09T00:35:35,252 # Package would be ignored # 2025-09-09T00:35:35,252 ############################ 2025-09-09T00:35:35,252 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-09T00:35:35,252 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,252 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,252 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-09T00:35:35,252 to the `packages` configuration field. 2025-09-09T00:35:35,253 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,253 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,253 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,253 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,253 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-09T00:35:35,253 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-09T00:35:35,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,254 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,254 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,254 even if it does not contain any `.py` files. 2025-09-09T00:35:35,254 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,254 directory, all directories are treated like packages. 2025-09-09T00:35:35,254 ******************************************************************************** 2025-09-09T00:35:35,255 !! 2025-09-09T00:35:35,255 check.warn(importable) 2025-09-09T00:35:35,255 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,255 !! 2025-09-09T00:35:35,255 ******************************************************************************** 2025-09-09T00:35:35,255 ############################ 2025-09-09T00:35:35,255 # Package would be ignored # 2025-09-09T00:35:35,255 ############################ 2025-09-09T00:35:35,255 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-09T00:35:35,256 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,256 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,256 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-09T00:35:35,256 to the `packages` configuration field. 2025-09-09T00:35:35,256 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,256 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,256 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,256 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,257 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,257 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-09T00:35:35,257 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-09T00:35:35,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,257 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,257 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,257 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,257 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,258 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,258 even if it does not contain any `.py` files. 2025-09-09T00:35:35,258 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,258 directory, all directories are treated like packages. 2025-09-09T00:35:35,258 ******************************************************************************** 2025-09-09T00:35:35,258 !! 2025-09-09T00:35:35,258 check.warn(importable) 2025-09-09T00:35:35,258 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,258 !! 2025-09-09T00:35:35,259 ******************************************************************************** 2025-09-09T00:35:35,259 ############################ 2025-09-09T00:35:35,259 # Package would be ignored # 2025-09-09T00:35:35,259 ############################ 2025-09-09T00:35:35,259 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,259 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,259 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,259 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-09T00:35:35,259 to the `packages` configuration field. 2025-09-09T00:35:35,259 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,260 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,260 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,260 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,260 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,260 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,260 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-09T00:35:35,260 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,260 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,260 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,261 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,261 even if it does not contain any `.py` files. 2025-09-09T00:35:35,261 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,261 directory, all directories are treated like packages. 2025-09-09T00:35:35,261 ******************************************************************************** 2025-09-09T00:35:35,262 !! 2025-09-09T00:35:35,262 check.warn(importable) 2025-09-09T00:35:35,262 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,262 !! 2025-09-09T00:35:35,262 ******************************************************************************** 2025-09-09T00:35:35,262 ############################ 2025-09-09T00:35:35,262 # Package would be ignored # 2025-09-09T00:35:35,262 ############################ 2025-09-09T00:35:35,262 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-09T00:35:35,262 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,263 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,263 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-09T00:35:35,263 to the `packages` configuration field. 2025-09-09T00:35:35,263 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,263 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,263 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,263 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-09T00:35:35,264 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-09T00:35:35,264 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,264 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,264 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,264 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,264 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,264 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,264 even if it does not contain any `.py` files. 2025-09-09T00:35:35,265 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,265 directory, all directories are treated like packages. 2025-09-09T00:35:35,265 ******************************************************************************** 2025-09-09T00:35:35,265 !! 2025-09-09T00:35:35,265 check.warn(importable) 2025-09-09T00:35:35,265 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,265 !! 2025-09-09T00:35:35,265 ******************************************************************************** 2025-09-09T00:35:35,265 ############################ 2025-09-09T00:35:35,265 # Package would be ignored # 2025-09-09T00:35:35,266 ############################ 2025-09-09T00:35:35,266 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-09T00:35:35,266 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,266 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,266 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-09T00:35:35,266 to the `packages` configuration field. 2025-09-09T00:35:35,266 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,266 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,266 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,266 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,267 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,267 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-09T00:35:35,267 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-09T00:35:35,267 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,267 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,267 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,267 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,268 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,268 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,268 even if it does not contain any `.py` files. 2025-09-09T00:35:35,268 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,268 directory, all directories are treated like packages. 2025-09-09T00:35:35,268 ******************************************************************************** 2025-09-09T00:35:35,268 !! 2025-09-09T00:35:35,268 check.warn(importable) 2025-09-09T00:35:35,268 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,269 !! 2025-09-09T00:35:35,269 ******************************************************************************** 2025-09-09T00:35:35,269 ############################ 2025-09-09T00:35:35,269 # Package would be ignored # 2025-09-09T00:35:35,269 ############################ 2025-09-09T00:35:35,269 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,269 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,269 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,269 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-09T00:35:35,270 to the `packages` configuration field. 2025-09-09T00:35:35,270 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,270 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,270 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,270 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,270 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,271 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-09T00:35:35,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,271 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,271 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,271 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,271 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,271 even if it does not contain any `.py` files. 2025-09-09T00:35:35,271 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,272 directory, all directories are treated like packages. 2025-09-09T00:35:35,272 ******************************************************************************** 2025-09-09T00:35:35,272 !! 2025-09-09T00:35:35,272 check.warn(importable) 2025-09-09T00:35:35,272 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T00:35:35,272 !! 2025-09-09T00:35:35,272 ******************************************************************************** 2025-09-09T00:35:35,272 ############################ 2025-09-09T00:35:35,272 # Package would be ignored # 2025-09-09T00:35:35,272 ############################ 2025-09-09T00:35:35,273 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-09T00:35:35,273 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,273 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,273 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-09T00:35:35,273 to the `packages` configuration field. 2025-09-09T00:35:35,273 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,273 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,273 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,274 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,274 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-09T00:35:35,274 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-09T00:35:35,274 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,274 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,274 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,274 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,275 even if it does not contain any `.py` files. 2025-09-09T00:35:35,275 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,275 directory, all directories are treated like packages. 2025-09-09T00:35:35,275 ******************************************************************************** 2025-09-09T00:35:35,275 !! 2025-09-09T00:35:35,275 check.warn(importable) 2025-09-09T00:35:35,275 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T00:35:35,275 !! 2025-09-09T00:35:35,276 ******************************************************************************** 2025-09-09T00:35:35,276 ############################ 2025-09-09T00:35:35,276 # Package would be ignored # 2025-09-09T00:35:35,276 ############################ 2025-09-09T00:35:35,276 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-09T00:35:35,276 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,276 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,276 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-09T00:35:35,276 to the `packages` configuration field. 2025-09-09T00:35:35,276 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,277 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,277 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,277 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,277 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-09T00:35:35,277 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-09T00:35:35,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,277 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,278 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,278 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,278 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,278 even if it does not contain any `.py` files. 2025-09-09T00:35:35,278 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,278 directory, all directories are treated like packages. 2025-09-09T00:35:35,278 ******************************************************************************** 2025-09-09T00:35:35,278 !! 2025-09-09T00:35:35,279 check.warn(importable) 2025-09-09T00:35:35,279 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T00:35:35,279 !! 2025-09-09T00:35:35,279 ******************************************************************************** 2025-09-09T00:35:35,279 ############################ 2025-09-09T00:35:35,279 # Package would be ignored # 2025-09-09T00:35:35,279 ############################ 2025-09-09T00:35:35,279 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-09T00:35:35,279 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,279 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,280 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-09T00:35:35,280 to the `packages` configuration field. 2025-09-09T00:35:35,280 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,280 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,280 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,280 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,281 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-09T00:35:35,281 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-09T00:35:35,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,281 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,281 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,281 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,281 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,282 even if it does not contain any `.py` files. 2025-09-09T00:35:35,282 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,282 directory, all directories are treated like packages. 2025-09-09T00:35:35,282 ******************************************************************************** 2025-09-09T00:35:35,282 !! 2025-09-09T00:35:35,282 check.warn(importable) 2025-09-09T00:35:35,282 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T00:35:35,282 !! 2025-09-09T00:35:35,282 ******************************************************************************** 2025-09-09T00:35:35,283 ############################ 2025-09-09T00:35:35,283 # Package would be ignored # 2025-09-09T00:35:35,283 ############################ 2025-09-09T00:35:35,283 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-09T00:35:35,283 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,283 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,283 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-09T00:35:35,283 to the `packages` configuration field. 2025-09-09T00:35:35,283 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,283 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,283 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,284 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,284 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,284 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-09T00:35:35,284 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-09T00:35:35,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,284 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,284 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,285 even if it does not contain any `.py` files. 2025-09-09T00:35:35,285 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,285 directory, all directories are treated like packages. 2025-09-09T00:35:35,285 ******************************************************************************** 2025-09-09T00:35:35,285 !! 2025-09-09T00:35:35,285 check.warn(importable) 2025-09-09T00:35:35,286 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,286 !! 2025-09-09T00:35:35,286 ******************************************************************************** 2025-09-09T00:35:35,286 ############################ 2025-09-09T00:35:35,286 # Package would be ignored # 2025-09-09T00:35:35,286 ############################ 2025-09-09T00:35:35,286 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-09T00:35:35,286 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,286 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,286 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-09T00:35:35,286 to the `packages` configuration field. 2025-09-09T00:35:35,287 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,287 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,287 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,287 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-09T00:35:35,287 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-09T00:35:35,287 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,288 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,288 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,288 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,288 even if it does not contain any `.py` files. 2025-09-09T00:35:35,288 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,288 directory, all directories are treated like packages. 2025-09-09T00:35:35,289 ******************************************************************************** 2025-09-09T00:35:35,289 !! 2025-09-09T00:35:35,289 check.warn(importable) 2025-09-09T00:35:35,289 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,289 !! 2025-09-09T00:35:35,289 ******************************************************************************** 2025-09-09T00:35:35,289 ############################ 2025-09-09T00:35:35,289 # Package would be ignored # 2025-09-09T00:35:35,289 ############################ 2025-09-09T00:35:35,289 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,290 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,290 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,290 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-09T00:35:35,290 to the `packages` configuration field. 2025-09-09T00:35:35,290 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,290 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,290 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,291 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,291 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-09T00:35:35,291 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-09T00:35:35,291 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,291 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,291 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,291 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,291 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,292 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,292 even if it does not contain any `.py` files. 2025-09-09T00:35:35,292 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,292 directory, all directories are treated like packages. 2025-09-09T00:35:35,292 ******************************************************************************** 2025-09-09T00:35:35,292 !! 2025-09-09T00:35:35,292 check.warn(importable) 2025-09-09T00:35:35,292 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,292 !! 2025-09-09T00:35:35,293 ******************************************************************************** 2025-09-09T00:35:35,293 ############################ 2025-09-09T00:35:35,293 # Package would be ignored # 2025-09-09T00:35:35,293 ############################ 2025-09-09T00:35:35,293 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,293 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,293 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,293 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,293 to the `packages` configuration field. 2025-09-09T00:35:35,294 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,294 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,294 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,294 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,294 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,294 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-09T00:35:35,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,294 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,295 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,295 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,295 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,295 even if it does not contain any `.py` files. 2025-09-09T00:35:35,295 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,295 directory, all directories are treated like packages. 2025-09-09T00:35:35,295 ******************************************************************************** 2025-09-09T00:35:35,296 !! 2025-09-09T00:35:35,296 check.warn(importable) 2025-09-09T00:35:35,296 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,296 !! 2025-09-09T00:35:35,296 ******************************************************************************** 2025-09-09T00:35:35,296 ############################ 2025-09-09T00:35:35,296 # Package would be ignored # 2025-09-09T00:35:35,296 ############################ 2025-09-09T00:35:35,296 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-09T00:35:35,296 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,297 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,297 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-09T00:35:35,297 to the `packages` configuration field. 2025-09-09T00:35:35,297 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,297 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,297 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,297 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,298 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,298 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-09T00:35:35,298 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-09T00:35:35,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,298 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,298 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,298 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,299 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,299 even if it does not contain any `.py` files. 2025-09-09T00:35:35,299 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,299 directory, all directories are treated like packages. 2025-09-09T00:35:35,299 ******************************************************************************** 2025-09-09T00:35:35,299 !! 2025-09-09T00:35:35,299 check.warn(importable) 2025-09-09T00:35:35,299 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,299 !! 2025-09-09T00:35:35,300 ******************************************************************************** 2025-09-09T00:35:35,300 ############################ 2025-09-09T00:35:35,300 # Package would be ignored # 2025-09-09T00:35:35,300 ############################ 2025-09-09T00:35:35,300 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-09T00:35:35,300 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,300 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,300 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-09T00:35:35,300 to the `packages` configuration field. 2025-09-09T00:35:35,300 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,301 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,301 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,301 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,301 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-09T00:35:35,301 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-09T00:35:35,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,301 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,302 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,302 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,302 even if it does not contain any `.py` files. 2025-09-09T00:35:35,302 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,302 directory, all directories are treated like packages. 2025-09-09T00:35:35,302 ******************************************************************************** 2025-09-09T00:35:35,302 !! 2025-09-09T00:35:35,303 check.warn(importable) 2025-09-09T00:35:35,303 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,303 !! 2025-09-09T00:35:35,303 ******************************************************************************** 2025-09-09T00:35:35,303 ############################ 2025-09-09T00:35:35,303 # Package would be ignored # 2025-09-09T00:35:35,303 ############################ 2025-09-09T00:35:35,303 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,303 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,303 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,304 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-09T00:35:35,304 to the `packages` configuration field. 2025-09-09T00:35:35,304 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,304 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,304 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,304 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,304 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,304 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,305 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-09T00:35:35,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,305 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,305 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,306 even if it does not contain any `.py` files. 2025-09-09T00:35:35,306 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,306 directory, all directories are treated like packages. 2025-09-09T00:35:35,306 ******************************************************************************** 2025-09-09T00:35:35,306 !! 2025-09-09T00:35:35,306 check.warn(importable) 2025-09-09T00:35:35,306 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,306 !! 2025-09-09T00:35:35,306 ******************************************************************************** 2025-09-09T00:35:35,307 ############################ 2025-09-09T00:35:35,307 # Package would be ignored # 2025-09-09T00:35:35,307 ############################ 2025-09-09T00:35:35,307 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-09T00:35:35,307 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,307 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,307 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-09T00:35:35,307 to the `packages` configuration field. 2025-09-09T00:35:35,307 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,307 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,308 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,308 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,308 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-09T00:35:35,308 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-09T00:35:35,308 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,308 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,308 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,309 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,309 even if it does not contain any `.py` files. 2025-09-09T00:35:35,309 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,309 directory, all directories are treated like packages. 2025-09-09T00:35:35,309 ******************************************************************************** 2025-09-09T00:35:35,309 !! 2025-09-09T00:35:35,310 check.warn(importable) 2025-09-09T00:35:35,310 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,310 !! 2025-09-09T00:35:35,310 ******************************************************************************** 2025-09-09T00:35:35,310 ############################ 2025-09-09T00:35:35,310 # Package would be ignored # 2025-09-09T00:35:35,310 ############################ 2025-09-09T00:35:35,310 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-09T00:35:35,310 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,310 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,311 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-09T00:35:35,311 to the `packages` configuration field. 2025-09-09T00:35:35,311 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,311 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,311 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,311 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,311 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-09T00:35:35,312 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-09T00:35:35,312 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,312 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,312 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,312 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,312 even if it does not contain any `.py` files. 2025-09-09T00:35:35,312 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,313 directory, all directories are treated like packages. 2025-09-09T00:35:35,313 ******************************************************************************** 2025-09-09T00:35:35,313 !! 2025-09-09T00:35:35,313 check.warn(importable) 2025-09-09T00:35:35,313 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,313 !! 2025-09-09T00:35:35,313 ******************************************************************************** 2025-09-09T00:35:35,313 ############################ 2025-09-09T00:35:35,313 # Package would be ignored # 2025-09-09T00:35:35,313 ############################ 2025-09-09T00:35:35,314 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,314 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,314 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,314 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-09T00:35:35,314 to the `packages` configuration field. 2025-09-09T00:35:35,314 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,314 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,314 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,315 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,315 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,315 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-09T00:35:35,315 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,315 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,315 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,316 even if it does not contain any `.py` files. 2025-09-09T00:35:35,316 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,316 directory, all directories are treated like packages. 2025-09-09T00:35:35,316 ******************************************************************************** 2025-09-09T00:35:35,316 !! 2025-09-09T00:35:35,316 check.warn(importable) 2025-09-09T00:35:35,316 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,316 !! 2025-09-09T00:35:35,317 ******************************************************************************** 2025-09-09T00:35:35,317 ############################ 2025-09-09T00:35:35,317 # Package would be ignored # 2025-09-09T00:35:35,317 ############################ 2025-09-09T00:35:35,317 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-09T00:35:35,317 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,317 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,317 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-09T00:35:35,317 to the `packages` configuration field. 2025-09-09T00:35:35,318 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,318 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,318 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,318 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,318 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-09T00:35:35,318 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-09T00:35:35,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,318 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,319 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,319 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,319 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,319 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,319 even if it does not contain any `.py` files. 2025-09-09T00:35:35,319 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,319 directory, all directories are treated like packages. 2025-09-09T00:35:35,319 ******************************************************************************** 2025-09-09T00:35:35,320 !! 2025-09-09T00:35:35,320 check.warn(importable) 2025-09-09T00:35:35,320 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,320 !! 2025-09-09T00:35:35,320 ******************************************************************************** 2025-09-09T00:35:35,320 ############################ 2025-09-09T00:35:35,320 # Package would be ignored # 2025-09-09T00:35:35,320 ############################ 2025-09-09T00:35:35,320 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-09T00:35:35,320 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,321 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,321 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-09T00:35:35,321 to the `packages` configuration field. 2025-09-09T00:35:35,321 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,321 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,321 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,321 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,322 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-09T00:35:35,322 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-09T00:35:35,322 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,322 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,322 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,323 even if it does not contain any `.py` files. 2025-09-09T00:35:35,323 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,323 directory, all directories are treated like packages. 2025-09-09T00:35:35,323 ******************************************************************************** 2025-09-09T00:35:35,323 !! 2025-09-09T00:35:35,323 check.warn(importable) 2025-09-09T00:35:35,323 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,323 !! 2025-09-09T00:35:35,323 ******************************************************************************** 2025-09-09T00:35:35,323 ############################ 2025-09-09T00:35:35,324 # Package would be ignored # 2025-09-09T00:35:35,324 ############################ 2025-09-09T00:35:35,324 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,324 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,324 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,324 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-09T00:35:35,324 to the `packages` configuration field. 2025-09-09T00:35:35,324 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,324 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,324 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,325 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,325 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,325 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,325 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-09T00:35:35,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,325 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,325 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,326 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,326 even if it does not contain any `.py` files. 2025-09-09T00:35:35,326 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,326 directory, all directories are treated like packages. 2025-09-09T00:35:35,326 ******************************************************************************** 2025-09-09T00:35:35,326 !! 2025-09-09T00:35:35,326 check.warn(importable) 2025-09-09T00:35:35,327 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,327 !! 2025-09-09T00:35:35,327 ******************************************************************************** 2025-09-09T00:35:35,327 ############################ 2025-09-09T00:35:35,327 # Package would be ignored # 2025-09-09T00:35:35,327 ############################ 2025-09-09T00:35:35,327 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-09T00:35:35,327 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,327 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,327 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-09T00:35:35,327 to the `packages` configuration field. 2025-09-09T00:35:35,328 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,328 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,328 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,328 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,328 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-09T00:35:35,328 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-09T00:35:35,328 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,329 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,329 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,329 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,329 even if it does not contain any `.py` files. 2025-09-09T00:35:35,329 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,330 directory, all directories are treated like packages. 2025-09-09T00:35:35,330 ******************************************************************************** 2025-09-09T00:35:35,330 !! 2025-09-09T00:35:35,330 check.warn(importable) 2025-09-09T00:35:35,330 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,330 !! 2025-09-09T00:35:35,330 ******************************************************************************** 2025-09-09T00:35:35,330 ############################ 2025-09-09T00:35:35,330 # Package would be ignored # 2025-09-09T00:35:35,331 ############################ 2025-09-09T00:35:35,331 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-09T00:35:35,331 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,331 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,331 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-09T00:35:35,331 to the `packages` configuration field. 2025-09-09T00:35:35,331 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,331 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,332 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,332 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,332 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-09T00:35:35,332 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-09T00:35:35,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,332 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,332 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,333 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,333 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,333 even if it does not contain any `.py` files. 2025-09-09T00:35:35,333 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,333 directory, all directories are treated like packages. 2025-09-09T00:35:35,333 ******************************************************************************** 2025-09-09T00:35:35,333 !! 2025-09-09T00:35:35,333 check.warn(importable) 2025-09-09T00:35:35,333 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,334 !! 2025-09-09T00:35:35,334 ******************************************************************************** 2025-09-09T00:35:35,334 ############################ 2025-09-09T00:35:35,334 # Package would be ignored # 2025-09-09T00:35:35,334 ############################ 2025-09-09T00:35:35,334 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,334 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,334 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,334 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-09T00:35:35,334 to the `packages` configuration field. 2025-09-09T00:35:35,335 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,335 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,335 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,335 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,335 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-09T00:35:35,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,335 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,336 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,336 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,336 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,336 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,336 even if it does not contain any `.py` files. 2025-09-09T00:35:35,336 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,336 directory, all directories are treated like packages. 2025-09-09T00:35:35,336 ******************************************************************************** 2025-09-09T00:35:35,337 !! 2025-09-09T00:35:35,337 check.warn(importable) 2025-09-09T00:35:35,337 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,337 !! 2025-09-09T00:35:35,337 ******************************************************************************** 2025-09-09T00:35:35,337 ############################ 2025-09-09T00:35:35,337 # Package would be ignored # 2025-09-09T00:35:35,337 ############################ 2025-09-09T00:35:35,337 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-09T00:35:35,337 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,338 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,338 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-09T00:35:35,338 to the `packages` configuration field. 2025-09-09T00:35:35,338 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,338 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,338 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,338 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,339 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-09T00:35:35,339 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-09T00:35:35,339 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,339 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,339 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,339 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,340 even if it does not contain any `.py` files. 2025-09-09T00:35:35,340 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,340 directory, all directories are treated like packages. 2025-09-09T00:35:35,340 ******************************************************************************** 2025-09-09T00:35:35,340 !! 2025-09-09T00:35:35,340 check.warn(importable) 2025-09-09T00:35:35,340 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,340 !! 2025-09-09T00:35:35,340 ******************************************************************************** 2025-09-09T00:35:35,340 ############################ 2025-09-09T00:35:35,341 # Package would be ignored # 2025-09-09T00:35:35,341 ############################ 2025-09-09T00:35:35,341 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,341 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,341 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,341 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-09T00:35:35,341 to the `packages` configuration field. 2025-09-09T00:35:35,341 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,341 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,341 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,342 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,342 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-09T00:35:35,342 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-09T00:35:35,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,342 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,343 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,343 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,343 even if it does not contain any `.py` files. 2025-09-09T00:35:35,343 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,343 directory, all directories are treated like packages. 2025-09-09T00:35:35,343 ******************************************************************************** 2025-09-09T00:35:35,343 !! 2025-09-09T00:35:35,344 check.warn(importable) 2025-09-09T00:35:35,344 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,344 !! 2025-09-09T00:35:35,344 ******************************************************************************** 2025-09-09T00:35:35,344 ############################ 2025-09-09T00:35:35,344 # Package would be ignored # 2025-09-09T00:35:35,344 ############################ 2025-09-09T00:35:35,344 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,344 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,345 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,345 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,345 to the `packages` configuration field. 2025-09-09T00:35:35,345 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,345 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,345 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,345 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,346 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,346 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-09T00:35:35,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,346 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,346 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,346 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,347 even if it does not contain any `.py` files. 2025-09-09T00:35:35,347 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,347 directory, all directories are treated like packages. 2025-09-09T00:35:35,347 ******************************************************************************** 2025-09-09T00:35:35,347 !! 2025-09-09T00:35:35,347 check.warn(importable) 2025-09-09T00:35:35,347 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,347 !! 2025-09-09T00:35:35,348 ******************************************************************************** 2025-09-09T00:35:35,348 ############################ 2025-09-09T00:35:35,348 # Package would be ignored # 2025-09-09T00:35:35,348 ############################ 2025-09-09T00:35:35,348 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-09T00:35:35,348 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,348 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,348 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-09T00:35:35,348 to the `packages` configuration field. 2025-09-09T00:35:35,348 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,349 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,349 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,349 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-09T00:35:35,349 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-09T00:35:35,349 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,349 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,349 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,350 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,350 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,350 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,350 even if it does not contain any `.py` files. 2025-09-09T00:35:35,350 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,350 directory, all directories are treated like packages. 2025-09-09T00:35:35,350 ******************************************************************************** 2025-09-09T00:35:35,351 !! 2025-09-09T00:35:35,351 check.warn(importable) 2025-09-09T00:35:35,351 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,351 !! 2025-09-09T00:35:35,351 ******************************************************************************** 2025-09-09T00:35:35,351 ############################ 2025-09-09T00:35:35,351 # Package would be ignored # 2025-09-09T00:35:35,351 ############################ 2025-09-09T00:35:35,351 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-09T00:35:35,351 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,352 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,352 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-09T00:35:35,352 to the `packages` configuration field. 2025-09-09T00:35:35,352 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,352 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,352 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,352 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,352 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,353 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-09T00:35:35,353 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-09T00:35:35,353 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,353 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,353 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,353 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,354 even if it does not contain any `.py` files. 2025-09-09T00:35:35,354 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,354 directory, all directories are treated like packages. 2025-09-09T00:35:35,354 ******************************************************************************** 2025-09-09T00:35:35,354 !! 2025-09-09T00:35:35,354 check.warn(importable) 2025-09-09T00:35:35,354 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,354 !! 2025-09-09T00:35:35,354 ******************************************************************************** 2025-09-09T00:35:35,354 ############################ 2025-09-09T00:35:35,355 # Package would be ignored # 2025-09-09T00:35:35,355 ############################ 2025-09-09T00:35:35,355 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,355 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,355 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,355 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-09T00:35:35,355 to the `packages` configuration field. 2025-09-09T00:35:35,355 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,355 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,356 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,356 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,356 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,356 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-09T00:35:35,356 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,356 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,357 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,357 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,357 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,357 even if it does not contain any `.py` files. 2025-09-09T00:35:35,357 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,357 directory, all directories are treated like packages. 2025-09-09T00:35:35,357 ******************************************************************************** 2025-09-09T00:35:35,357 !! 2025-09-09T00:35:35,358 check.warn(importable) 2025-09-09T00:35:35,358 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,358 !! 2025-09-09T00:35:35,358 ******************************************************************************** 2025-09-09T00:35:35,358 ############################ 2025-09-09T00:35:35,358 # Package would be ignored # 2025-09-09T00:35:35,358 ############################ 2025-09-09T00:35:35,358 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-09T00:35:35,358 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,358 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,359 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-09T00:35:35,359 to the `packages` configuration field. 2025-09-09T00:35:35,359 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,359 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,359 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,359 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-09T00:35:35,360 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-09T00:35:35,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,360 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,360 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,360 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,360 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,360 even if it does not contain any `.py` files. 2025-09-09T00:35:35,361 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,361 directory, all directories are treated like packages. 2025-09-09T00:35:35,361 ******************************************************************************** 2025-09-09T00:35:35,361 !! 2025-09-09T00:35:35,361 check.warn(importable) 2025-09-09T00:35:35,361 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,361 !! 2025-09-09T00:35:35,361 ******************************************************************************** 2025-09-09T00:35:35,361 ############################ 2025-09-09T00:35:35,361 # Package would be ignored # 2025-09-09T00:35:35,362 ############################ 2025-09-09T00:35:35,362 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-09T00:35:35,362 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,362 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,362 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-09T00:35:35,362 to the `packages` configuration field. 2025-09-09T00:35:35,362 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,362 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,363 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,363 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,363 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-09T00:35:35,363 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-09T00:35:35,363 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,363 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,363 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,364 even if it does not contain any `.py` files. 2025-09-09T00:35:35,364 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,364 directory, all directories are treated like packages. 2025-09-09T00:35:35,364 ******************************************************************************** 2025-09-09T00:35:35,364 !! 2025-09-09T00:35:35,364 check.warn(importable) 2025-09-09T00:35:35,364 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,364 !! 2025-09-09T00:35:35,365 ******************************************************************************** 2025-09-09T00:35:35,365 ############################ 2025-09-09T00:35:35,365 # Package would be ignored # 2025-09-09T00:35:35,365 ############################ 2025-09-09T00:35:35,365 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,365 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,365 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,365 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-09T00:35:35,365 to the `packages` configuration field. 2025-09-09T00:35:35,366 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,366 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,366 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,366 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,366 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,366 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-09T00:35:35,366 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,366 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,367 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,367 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,367 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,367 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,367 even if it does not contain any `.py` files. 2025-09-09T00:35:35,367 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,367 directory, all directories are treated like packages. 2025-09-09T00:35:35,368 ******************************************************************************** 2025-09-09T00:35:35,368 !! 2025-09-09T00:35:35,368 check.warn(importable) 2025-09-09T00:35:35,368 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,368 !! 2025-09-09T00:35:35,368 ******************************************************************************** 2025-09-09T00:35:35,368 ############################ 2025-09-09T00:35:35,368 # Package would be ignored # 2025-09-09T00:35:35,368 ############################ 2025-09-09T00:35:35,368 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-09T00:35:35,369 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,369 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,369 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-09T00:35:35,369 to the `packages` configuration field. 2025-09-09T00:35:35,369 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,369 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,369 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,369 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,370 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-09T00:35:35,370 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-09T00:35:35,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,370 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,370 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,370 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,370 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,371 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,371 even if it does not contain any `.py` files. 2025-09-09T00:35:35,371 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,371 directory, all directories are treated like packages. 2025-09-09T00:35:35,371 ******************************************************************************** 2025-09-09T00:35:35,371 !! 2025-09-09T00:35:35,371 check.warn(importable) 2025-09-09T00:35:35,371 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,371 !! 2025-09-09T00:35:35,372 ******************************************************************************** 2025-09-09T00:35:35,372 ############################ 2025-09-09T00:35:35,372 # Package would be ignored # 2025-09-09T00:35:35,372 ############################ 2025-09-09T00:35:35,372 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,372 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,372 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,372 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-09T00:35:35,372 to the `packages` configuration field. 2025-09-09T00:35:35,372 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,373 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,373 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,373 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,373 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-09T00:35:35,373 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-09T00:35:35,373 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,373 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,374 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,374 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,374 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,374 even if it does not contain any `.py` files. 2025-09-09T00:35:35,374 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,374 directory, all directories are treated like packages. 2025-09-09T00:35:35,374 ******************************************************************************** 2025-09-09T00:35:35,375 !! 2025-09-09T00:35:35,375 check.warn(importable) 2025-09-09T00:35:35,375 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,375 !! 2025-09-09T00:35:35,375 ******************************************************************************** 2025-09-09T00:35:35,375 ############################ 2025-09-09T00:35:35,375 # Package would be ignored # 2025-09-09T00:35:35,375 ############################ 2025-09-09T00:35:35,375 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,375 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,375 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,376 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,376 to the `packages` configuration field. 2025-09-09T00:35:35,376 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,376 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,376 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,376 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,376 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,376 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,377 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-09T00:35:35,377 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,377 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,377 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,377 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,377 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,377 even if it does not contain any `.py` files. 2025-09-09T00:35:35,378 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,378 directory, all directories are treated like packages. 2025-09-09T00:35:35,378 ******************************************************************************** 2025-09-09T00:35:35,378 !! 2025-09-09T00:35:35,378 check.warn(importable) 2025-09-09T00:35:35,378 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,378 !! 2025-09-09T00:35:35,378 ******************************************************************************** 2025-09-09T00:35:35,378 ############################ 2025-09-09T00:35:35,378 # Package would be ignored # 2025-09-09T00:35:35,379 ############################ 2025-09-09T00:35:35,379 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-09T00:35:35,379 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,379 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,379 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-09T00:35:35,379 to the `packages` configuration field. 2025-09-09T00:35:35,379 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,379 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,380 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,380 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-09T00:35:35,380 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-09T00:35:35,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,380 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,380 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,380 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,381 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,381 even if it does not contain any `.py` files. 2025-09-09T00:35:35,381 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,381 directory, all directories are treated like packages. 2025-09-09T00:35:35,381 ******************************************************************************** 2025-09-09T00:35:35,381 !! 2025-09-09T00:35:35,381 check.warn(importable) 2025-09-09T00:35:35,382 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,382 !! 2025-09-09T00:35:35,382 ******************************************************************************** 2025-09-09T00:35:35,382 ############################ 2025-09-09T00:35:35,382 # Package would be ignored # 2025-09-09T00:35:35,382 ############################ 2025-09-09T00:35:35,382 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-09T00:35:35,382 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,382 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,382 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-09T00:35:35,383 to the `packages` configuration field. 2025-09-09T00:35:35,383 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,383 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,383 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,383 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,383 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,383 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-09T00:35:35,383 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-09T00:35:35,384 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,384 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,384 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,384 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,384 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,384 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,384 even if it does not contain any `.py` files. 2025-09-09T00:35:35,384 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,384 directory, all directories are treated like packages. 2025-09-09T00:35:35,385 ******************************************************************************** 2025-09-09T00:35:35,385 !! 2025-09-09T00:35:35,385 check.warn(importable) 2025-09-09T00:35:35,385 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,385 !! 2025-09-09T00:35:35,385 ******************************************************************************** 2025-09-09T00:35:35,385 ############################ 2025-09-09T00:35:35,385 # Package would be ignored # 2025-09-09T00:35:35,385 ############################ 2025-09-09T00:35:35,385 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,386 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,386 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,386 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-09T00:35:35,386 to the `packages` configuration field. 2025-09-09T00:35:35,386 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,386 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,386 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,386 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,387 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,387 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-09T00:35:35,387 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,387 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,387 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,387 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,387 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,388 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,388 even if it does not contain any `.py` files. 2025-09-09T00:35:35,388 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,388 directory, all directories are treated like packages. 2025-09-09T00:35:35,388 ******************************************************************************** 2025-09-09T00:35:35,388 !! 2025-09-09T00:35:35,388 check.warn(importable) 2025-09-09T00:35:35,388 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-09T00:35:35,388 !! 2025-09-09T00:35:35,388 ******************************************************************************** 2025-09-09T00:35:35,389 ############################ 2025-09-09T00:35:35,389 # Package would be ignored # 2025-09-09T00:35:35,389 ############################ 2025-09-09T00:35:35,389 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-09T00:35:35,389 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,389 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,389 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-09T00:35:35,389 to the `packages` configuration field. 2025-09-09T00:35:35,389 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,390 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,390 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,390 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,390 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-09T00:35:35,390 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-09T00:35:35,390 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,390 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,390 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,391 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,391 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,391 even if it does not contain any `.py` files. 2025-09-09T00:35:35,391 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,391 directory, all directories are treated like packages. 2025-09-09T00:35:35,391 ******************************************************************************** 2025-09-09T00:35:35,391 !! 2025-09-09T00:35:35,392 check.warn(importable) 2025-09-09T00:35:35,392 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,392 !! 2025-09-09T00:35:35,392 ******************************************************************************** 2025-09-09T00:35:35,392 ############################ 2025-09-09T00:35:35,392 # Package would be ignored # 2025-09-09T00:35:35,392 ############################ 2025-09-09T00:35:35,392 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-09T00:35:35,392 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,392 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,393 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-09T00:35:35,393 to the `packages` configuration field. 2025-09-09T00:35:35,393 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,393 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,393 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,394 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-09T00:35:35,394 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-09T00:35:35,394 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,394 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,394 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,394 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,394 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,394 even if it does not contain any `.py` files. 2025-09-09T00:35:35,395 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,395 directory, all directories are treated like packages. 2025-09-09T00:35:35,395 ******************************************************************************** 2025-09-09T00:35:35,395 !! 2025-09-09T00:35:35,395 check.warn(importable) 2025-09-09T00:35:35,395 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-09T00:35:35,395 !! 2025-09-09T00:35:35,395 ******************************************************************************** 2025-09-09T00:35:35,395 ############################ 2025-09-09T00:35:35,396 # Package would be ignored # 2025-09-09T00:35:35,396 ############################ 2025-09-09T00:35:35,396 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-09T00:35:35,396 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,396 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,396 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-09T00:35:35,396 to the `packages` configuration field. 2025-09-09T00:35:35,396 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,396 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,396 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,397 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,397 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-09T00:35:35,397 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-09T00:35:35,397 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,397 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,397 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,398 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,398 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,398 even if it does not contain any `.py` files. 2025-09-09T00:35:35,398 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,398 directory, all directories are treated like packages. 2025-09-09T00:35:35,398 ******************************************************************************** 2025-09-09T00:35:35,398 !! 2025-09-09T00:35:35,399 check.warn(importable) 2025-09-09T00:35:35,399 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,399 !! 2025-09-09T00:35:35,399 ******************************************************************************** 2025-09-09T00:35:35,399 ############################ 2025-09-09T00:35:35,399 # Package would be ignored # 2025-09-09T00:35:35,399 ############################ 2025-09-09T00:35:35,399 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-09T00:35:35,399 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,399 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,400 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-09T00:35:35,400 to the `packages` configuration field. 2025-09-09T00:35:35,400 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,400 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,400 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,400 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,400 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-09T00:35:35,401 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-09T00:35:35,401 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,401 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,401 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,401 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,401 even if it does not contain any `.py` files. 2025-09-09T00:35:35,402 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,402 directory, all directories are treated like packages. 2025-09-09T00:35:35,402 ******************************************************************************** 2025-09-09T00:35:35,402 !! 2025-09-09T00:35:35,402 check.warn(importable) 2025-09-09T00:35:35,402 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,402 !! 2025-09-09T00:35:35,402 ******************************************************************************** 2025-09-09T00:35:35,402 ############################ 2025-09-09T00:35:35,402 # Package would be ignored # 2025-09-09T00:35:35,402 ############################ 2025-09-09T00:35:35,403 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-09T00:35:35,403 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,403 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,403 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-09T00:35:35,403 to the `packages` configuration field. 2025-09-09T00:35:35,403 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,403 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,403 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,403 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,404 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-09T00:35:35,404 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-09T00:35:35,404 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,404 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,404 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,404 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,405 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,405 even if it does not contain any `.py` files. 2025-09-09T00:35:35,405 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,405 directory, all directories are treated like packages. 2025-09-09T00:35:35,405 ******************************************************************************** 2025-09-09T00:35:35,405 !! 2025-09-09T00:35:35,405 check.warn(importable) 2025-09-09T00:35:35,405 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,406 !! 2025-09-09T00:35:35,406 ******************************************************************************** 2025-09-09T00:35:35,406 ############################ 2025-09-09T00:35:35,406 # Package would be ignored # 2025-09-09T00:35:35,406 ############################ 2025-09-09T00:35:35,406 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,406 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,406 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,406 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-09T00:35:35,406 to the `packages` configuration field. 2025-09-09T00:35:35,407 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,407 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,407 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,407 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,407 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,407 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-09T00:35:35,407 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-09T00:35:35,408 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,408 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,408 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,408 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,408 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,408 even if it does not contain any `.py` files. 2025-09-09T00:35:35,408 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,408 directory, all directories are treated like packages. 2025-09-09T00:35:35,409 ******************************************************************************** 2025-09-09T00:35:35,409 !! 2025-09-09T00:35:35,409 check.warn(importable) 2025-09-09T00:35:35,409 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-09T00:35:35,409 !! 2025-09-09T00:35:35,409 ******************************************************************************** 2025-09-09T00:35:35,409 ############################ 2025-09-09T00:35:35,409 # Package would be ignored # 2025-09-09T00:35:35,409 ############################ 2025-09-09T00:35:35,410 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-09T00:35:35,410 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,410 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,410 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-09T00:35:35,410 to the `packages` configuration field. 2025-09-09T00:35:35,410 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,410 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,410 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,410 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,411 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-09T00:35:35,411 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-09T00:35:35,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,411 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,411 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,412 even if it does not contain any `.py` files. 2025-09-09T00:35:35,412 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,412 directory, all directories are treated like packages. 2025-09-09T00:35:35,412 ******************************************************************************** 2025-09-09T00:35:35,412 !! 2025-09-09T00:35:35,412 check.warn(importable) 2025-09-09T00:35:35,412 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,412 !! 2025-09-09T00:35:35,413 ******************************************************************************** 2025-09-09T00:35:35,413 ############################ 2025-09-09T00:35:35,413 # Package would be ignored # 2025-09-09T00:35:35,413 ############################ 2025-09-09T00:35:35,413 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-09T00:35:35,413 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,413 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,413 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-09T00:35:35,413 to the `packages` configuration field. 2025-09-09T00:35:35,414 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,414 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,414 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,414 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,414 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-09T00:35:35,414 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-09T00:35:35,414 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,415 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,415 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,415 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,415 even if it does not contain any `.py` files. 2025-09-09T00:35:35,415 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,415 directory, all directories are treated like packages. 2025-09-09T00:35:35,415 ******************************************************************************** 2025-09-09T00:35:35,416 !! 2025-09-09T00:35:35,416 check.warn(importable) 2025-09-09T00:35:35,416 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-09T00:35:35,416 !! 2025-09-09T00:35:35,416 ******************************************************************************** 2025-09-09T00:35:35,416 ############################ 2025-09-09T00:35:35,416 # Package would be ignored # 2025-09-09T00:35:35,416 ############################ 2025-09-09T00:35:35,416 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-09T00:35:35,416 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,417 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,417 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-09T00:35:35,417 to the `packages` configuration field. 2025-09-09T00:35:35,417 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,417 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,417 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,418 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,418 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-09T00:35:35,418 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-09T00:35:35,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,418 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,418 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,418 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,418 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,419 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,419 even if it does not contain any `.py` files. 2025-09-09T00:35:35,419 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,419 directory, all directories are treated like packages. 2025-09-09T00:35:35,419 ******************************************************************************** 2025-09-09T00:35:35,419 !! 2025-09-09T00:35:35,419 check.warn(importable) 2025-09-09T00:35:35,419 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,419 !! 2025-09-09T00:35:35,420 ******************************************************************************** 2025-09-09T00:35:35,420 ############################ 2025-09-09T00:35:35,420 # Package would be ignored # 2025-09-09T00:35:35,420 ############################ 2025-09-09T00:35:35,420 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-09T00:35:35,420 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,420 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,420 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-09T00:35:35,420 to the `packages` configuration field. 2025-09-09T00:35:35,420 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,421 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,421 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,421 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,421 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,421 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-09T00:35:35,421 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-09T00:35:35,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,421 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,421 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,422 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,422 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,422 even if it does not contain any `.py` files. 2025-09-09T00:35:35,422 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,422 directory, all directories are treated like packages. 2025-09-09T00:35:35,422 ******************************************************************************** 2025-09-09T00:35:35,423 !! 2025-09-09T00:35:35,423 check.warn(importable) 2025-09-09T00:35:35,423 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,423 !! 2025-09-09T00:35:35,423 ******************************************************************************** 2025-09-09T00:35:35,423 ############################ 2025-09-09T00:35:35,423 # Package would be ignored # 2025-09-09T00:35:35,423 ############################ 2025-09-09T00:35:35,423 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,423 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,424 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,424 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-09T00:35:35,424 to the `packages` configuration field. 2025-09-09T00:35:35,424 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,424 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,424 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,424 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,425 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-09T00:35:35,425 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-09T00:35:35,425 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,425 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,425 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,425 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,425 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,426 even if it does not contain any `.py` files. 2025-09-09T00:35:35,426 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,426 directory, all directories are treated like packages. 2025-09-09T00:35:35,426 ******************************************************************************** 2025-09-09T00:35:35,426 !! 2025-09-09T00:35:35,426 check.warn(importable) 2025-09-09T00:35:35,426 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,426 !! 2025-09-09T00:35:35,426 ******************************************************************************** 2025-09-09T00:35:35,426 ############################ 2025-09-09T00:35:35,426 # Package would be ignored # 2025-09-09T00:35:35,427 ############################ 2025-09-09T00:35:35,427 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-09T00:35:35,427 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,427 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,427 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-09T00:35:35,427 to the `packages` configuration field. 2025-09-09T00:35:35,427 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,427 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,428 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,428 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,428 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-09T00:35:35,428 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-09T00:35:35,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,428 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,428 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,429 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,429 even if it does not contain any `.py` files. 2025-09-09T00:35:35,429 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,429 directory, all directories are treated like packages. 2025-09-09T00:35:35,429 ******************************************************************************** 2025-09-09T00:35:35,429 !! 2025-09-09T00:35:35,429 check.warn(importable) 2025-09-09T00:35:35,429 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,430 !! 2025-09-09T00:35:35,430 ******************************************************************************** 2025-09-09T00:35:35,430 ############################ 2025-09-09T00:35:35,430 # Package would be ignored # 2025-09-09T00:35:35,430 ############################ 2025-09-09T00:35:35,430 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-09T00:35:35,430 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,430 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,430 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-09T00:35:35,431 to the `packages` configuration field. 2025-09-09T00:35:35,431 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,431 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,431 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,431 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-09T00:35:35,431 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-09T00:35:35,432 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,432 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,432 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,432 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,432 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,432 even if it does not contain any `.py` files. 2025-09-09T00:35:35,432 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,433 directory, all directories are treated like packages. 2025-09-09T00:35:35,433 ******************************************************************************** 2025-09-09T00:35:35,433 !! 2025-09-09T00:35:35,433 check.warn(importable) 2025-09-09T00:35:35,433 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,433 !! 2025-09-09T00:35:35,433 ******************************************************************************** 2025-09-09T00:35:35,433 ############################ 2025-09-09T00:35:35,433 # Package would be ignored # 2025-09-09T00:35:35,433 ############################ 2025-09-09T00:35:35,434 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,434 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,434 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,434 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,434 to the `packages` configuration field. 2025-09-09T00:35:35,434 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,434 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,434 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,435 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,435 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,435 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-09T00:35:35,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,435 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,435 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,436 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,436 even if it does not contain any `.py` files. 2025-09-09T00:35:35,436 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,436 directory, all directories are treated like packages. 2025-09-09T00:35:35,436 ******************************************************************************** 2025-09-09T00:35:35,436 !! 2025-09-09T00:35:35,436 check.warn(importable) 2025-09-09T00:35:35,436 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-09T00:35:35,436 !! 2025-09-09T00:35:35,437 ******************************************************************************** 2025-09-09T00:35:35,437 ############################ 2025-09-09T00:35:35,437 # Package would be ignored # 2025-09-09T00:35:35,437 ############################ 2025-09-09T00:35:35,437 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-09T00:35:35,437 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,437 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,437 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-09T00:35:35,437 to the `packages` configuration field. 2025-09-09T00:35:35,437 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,438 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,438 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,438 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,438 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-09T00:35:35,438 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-09T00:35:35,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,438 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,439 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,439 even if it does not contain any `.py` files. 2025-09-09T00:35:35,439 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,439 directory, all directories are treated like packages. 2025-09-09T00:35:35,439 ******************************************************************************** 2025-09-09T00:35:35,439 !! 2025-09-09T00:35:35,440 check.warn(importable) 2025-09-09T00:35:35,440 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,440 !! 2025-09-09T00:35:35,440 ******************************************************************************** 2025-09-09T00:35:35,440 ############################ 2025-09-09T00:35:35,440 # Package would be ignored # 2025-09-09T00:35:35,440 ############################ 2025-09-09T00:35:35,440 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-09T00:35:35,440 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,440 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,440 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-09T00:35:35,441 to the `packages` configuration field. 2025-09-09T00:35:35,441 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,441 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,441 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,441 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,441 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-09T00:35:35,441 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-09T00:35:35,442 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,442 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,442 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,442 even if it does not contain any `.py` files. 2025-09-09T00:35:35,443 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,443 directory, all directories are treated like packages. 2025-09-09T00:35:35,443 ******************************************************************************** 2025-09-09T00:35:35,443 !! 2025-09-09T00:35:35,443 check.warn(importable) 2025-09-09T00:35:35,443 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,443 !! 2025-09-09T00:35:35,443 ******************************************************************************** 2025-09-09T00:35:35,443 ############################ 2025-09-09T00:35:35,443 # Package would be ignored # 2025-09-09T00:35:35,444 ############################ 2025-09-09T00:35:35,444 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,444 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,444 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,444 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-09T00:35:35,444 to the `packages` configuration field. 2025-09-09T00:35:35,444 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,444 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,444 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,445 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,445 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,445 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-09T00:35:35,445 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-09T00:35:35,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,445 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,445 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,446 even if it does not contain any `.py` files. 2025-09-09T00:35:35,446 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,446 directory, all directories are treated like packages. 2025-09-09T00:35:35,446 ******************************************************************************** 2025-09-09T00:35:35,446 !! 2025-09-09T00:35:35,446 check.warn(importable) 2025-09-09T00:35:35,446 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,447 !! 2025-09-09T00:35:35,447 ******************************************************************************** 2025-09-09T00:35:35,447 ############################ 2025-09-09T00:35:35,447 # Package would be ignored # 2025-09-09T00:35:35,447 ############################ 2025-09-09T00:35:35,447 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-09T00:35:35,447 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,447 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,447 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-09T00:35:35,447 to the `packages` configuration field. 2025-09-09T00:35:35,448 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,448 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,448 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,448 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,448 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-09T00:35:35,448 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-09T00:35:35,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,449 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,449 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,449 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,449 even if it does not contain any `.py` files. 2025-09-09T00:35:35,449 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,449 directory, all directories are treated like packages. 2025-09-09T00:35:35,450 ******************************************************************************** 2025-09-09T00:35:35,450 !! 2025-09-09T00:35:35,450 check.warn(importable) 2025-09-09T00:35:35,450 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-09T00:35:35,450 !! 2025-09-09T00:35:35,450 ******************************************************************************** 2025-09-09T00:35:35,450 ############################ 2025-09-09T00:35:35,450 # Package would be ignored # 2025-09-09T00:35:35,450 ############################ 2025-09-09T00:35:35,450 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-09T00:35:35,451 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,451 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,451 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-09T00:35:35,451 to the `packages` configuration field. 2025-09-09T00:35:35,451 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,451 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,451 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,452 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-09T00:35:35,452 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-09T00:35:35,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,452 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,452 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,453 even if it does not contain any `.py` files. 2025-09-09T00:35:35,453 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,453 directory, all directories are treated like packages. 2025-09-09T00:35:35,453 ******************************************************************************** 2025-09-09T00:35:35,453 !! 2025-09-09T00:35:35,453 check.warn(importable) 2025-09-09T00:35:35,453 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-09T00:35:35,453 !! 2025-09-09T00:35:35,453 ******************************************************************************** 2025-09-09T00:35:35,454 ############################ 2025-09-09T00:35:35,454 # Package would be ignored # 2025-09-09T00:35:35,454 ############################ 2025-09-09T00:35:35,454 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-09T00:35:35,454 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,454 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-09T00:35:35,454 to the `packages` configuration field. 2025-09-09T00:35:35,454 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,455 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,455 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,455 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-09T00:35:35,455 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-09T00:35:35,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,455 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,456 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,456 even if it does not contain any `.py` files. 2025-09-09T00:35:35,456 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,456 directory, all directories are treated like packages. 2025-09-09T00:35:35,456 ******************************************************************************** 2025-09-09T00:35:35,457 !! 2025-09-09T00:35:35,457 check.warn(importable) 2025-09-09T00:35:35,457 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-09T00:35:35,457 !! 2025-09-09T00:35:35,457 ******************************************************************************** 2025-09-09T00:35:35,457 ############################ 2025-09-09T00:35:35,457 # Package would be ignored # 2025-09-09T00:35:35,457 ############################ 2025-09-09T00:35:35,457 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-09T00:35:35,457 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,458 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,458 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-09T00:35:35,458 to the `packages` configuration field. 2025-09-09T00:35:35,458 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,458 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,458 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,459 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-09T00:35:35,459 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-09T00:35:35,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,459 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,459 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,459 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,460 even if it does not contain any `.py` files. 2025-09-09T00:35:35,460 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,460 directory, all directories are treated like packages. 2025-09-09T00:35:35,460 ******************************************************************************** 2025-09-09T00:35:35,460 !! 2025-09-09T00:35:35,460 check.warn(importable) 2025-09-09T00:35:35,460 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,460 !! 2025-09-09T00:35:35,460 ******************************************************************************** 2025-09-09T00:35:35,460 ############################ 2025-09-09T00:35:35,461 # Package would be ignored # 2025-09-09T00:35:35,461 ############################ 2025-09-09T00:35:35,461 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,461 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,461 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,461 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-09T00:35:35,461 to the `packages` configuration field. 2025-09-09T00:35:35,461 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,461 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,462 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,462 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-09T00:35:35,462 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-09T00:35:35,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,462 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,462 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,463 even if it does not contain any `.py` files. 2025-09-09T00:35:35,463 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,463 directory, all directories are treated like packages. 2025-09-09T00:35:35,463 ******************************************************************************** 2025-09-09T00:35:35,463 !! 2025-09-09T00:35:35,463 check.warn(importable) 2025-09-09T00:35:35,463 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-09T00:35:35,464 !! 2025-09-09T00:35:35,464 ******************************************************************************** 2025-09-09T00:35:35,464 ############################ 2025-09-09T00:35:35,464 # Package would be ignored # 2025-09-09T00:35:35,464 ############################ 2025-09-09T00:35:35,464 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-09T00:35:35,464 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,464 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,464 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-09T00:35:35,464 to the `packages` configuration field. 2025-09-09T00:35:35,465 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,465 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,465 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,465 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-09T00:35:35,465 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-09T00:35:35,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,465 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,466 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,466 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,466 even if it does not contain any `.py` files. 2025-09-09T00:35:35,466 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,466 directory, all directories are treated like packages. 2025-09-09T00:35:35,466 ******************************************************************************** 2025-09-09T00:35:35,467 !! 2025-09-09T00:35:35,467 check.warn(importable) 2025-09-09T00:35:35,467 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-09T00:35:35,467 !! 2025-09-09T00:35:35,467 ******************************************************************************** 2025-09-09T00:35:35,467 ############################ 2025-09-09T00:35:35,467 # Package would be ignored # 2025-09-09T00:35:35,467 ############################ 2025-09-09T00:35:35,467 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-09T00:35:35,468 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,468 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,468 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-09T00:35:35,468 to the `packages` configuration field. 2025-09-09T00:35:35,468 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,468 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,468 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,469 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,469 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-09T00:35:35,469 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-09T00:35:35,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,469 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,469 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,470 even if it does not contain any `.py` files. 2025-09-09T00:35:35,470 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,470 directory, all directories are treated like packages. 2025-09-09T00:35:35,470 ******************************************************************************** 2025-09-09T00:35:35,470 !! 2025-09-09T00:35:35,470 check.warn(importable) 2025-09-09T00:35:35,470 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-09T00:35:35,470 !! 2025-09-09T00:35:35,471 ******************************************************************************** 2025-09-09T00:35:35,471 ############################ 2025-09-09T00:35:35,471 # Package would be ignored # 2025-09-09T00:35:35,471 ############################ 2025-09-09T00:35:35,471 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-09T00:35:35,471 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,471 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,471 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-09T00:35:35,471 to the `packages` configuration field. 2025-09-09T00:35:35,471 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,472 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,472 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,472 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,472 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-09T00:35:35,472 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-09T00:35:35,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,472 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,472 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,473 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,473 even if it does not contain any `.py` files. 2025-09-09T00:35:35,473 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,473 directory, all directories are treated like packages. 2025-09-09T00:35:35,473 ******************************************************************************** 2025-09-09T00:35:35,473 !! 2025-09-09T00:35:35,474 check.warn(importable) 2025-09-09T00:35:35,474 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-09T00:35:35,474 !! 2025-09-09T00:35:35,474 ******************************************************************************** 2025-09-09T00:35:35,474 ############################ 2025-09-09T00:35:35,474 # Package would be ignored # 2025-09-09T00:35:35,474 ############################ 2025-09-09T00:35:35,474 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-09T00:35:35,474 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,474 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,475 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-09T00:35:35,475 to the `packages` configuration field. 2025-09-09T00:35:35,475 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,475 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,475 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,475 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,475 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-09T00:35:35,475 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-09T00:35:35,476 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,476 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,476 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,476 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,476 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,476 even if it does not contain any `.py` files. 2025-09-09T00:35:35,476 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,477 directory, all directories are treated like packages. 2025-09-09T00:35:35,477 ******************************************************************************** 2025-09-09T00:35:35,477 !! 2025-09-09T00:35:35,477 check.warn(importable) 2025-09-09T00:35:35,477 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-09T00:35:35,477 !! 2025-09-09T00:35:35,477 ******************************************************************************** 2025-09-09T00:35:35,477 ############################ 2025-09-09T00:35:35,477 # Package would be ignored # 2025-09-09T00:35:35,477 ############################ 2025-09-09T00:35:35,477 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-09T00:35:35,478 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,478 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,478 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-09T00:35:35,478 to the `packages` configuration field. 2025-09-09T00:35:35,478 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,478 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,478 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,478 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,479 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-09T00:35:35,479 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-09T00:35:35,479 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,479 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,479 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,479 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,480 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,480 even if it does not contain any `.py` files. 2025-09-09T00:35:35,480 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,480 directory, all directories are treated like packages. 2025-09-09T00:35:35,480 ******************************************************************************** 2025-09-09T00:35:35,480 !! 2025-09-09T00:35:35,480 check.warn(importable) 2025-09-09T00:35:35,480 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-09T00:35:35,481 !! 2025-09-09T00:35:35,481 ******************************************************************************** 2025-09-09T00:35:35,481 ############################ 2025-09-09T00:35:35,481 # Package would be ignored # 2025-09-09T00:35:35,481 ############################ 2025-09-09T00:35:35,481 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-09T00:35:35,481 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,481 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,481 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-09T00:35:35,482 to the `packages` configuration field. 2025-09-09T00:35:35,482 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,482 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,482 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,482 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,482 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-09T00:35:35,482 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-09T00:35:35,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,483 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,483 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,483 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,483 even if it does not contain any `.py` files. 2025-09-09T00:35:35,484 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,484 directory, all directories are treated like packages. 2025-09-09T00:35:35,484 ******************************************************************************** 2025-09-09T00:35:35,484 !! 2025-09-09T00:35:35,484 check.warn(importable) 2025-09-09T00:35:35,484 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-09T00:35:35,484 !! 2025-09-09T00:35:35,484 ******************************************************************************** 2025-09-09T00:35:35,484 ############################ 2025-09-09T00:35:35,484 # Package would be ignored # 2025-09-09T00:35:35,485 ############################ 2025-09-09T00:35:35,485 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-09T00:35:35,485 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,485 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,485 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-09T00:35:35,485 to the `packages` configuration field. 2025-09-09T00:35:35,485 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,485 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,486 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,486 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,486 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-09T00:35:35,486 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-09T00:35:35,486 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,486 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,486 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,487 even if it does not contain any `.py` files. 2025-09-09T00:35:35,487 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,487 directory, all directories are treated like packages. 2025-09-09T00:35:35,487 ******************************************************************************** 2025-09-09T00:35:35,487 !! 2025-09-09T00:35:35,487 check.warn(importable) 2025-09-09T00:35:35,488 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,488 !! 2025-09-09T00:35:35,488 ******************************************************************************** 2025-09-09T00:35:35,488 ############################ 2025-09-09T00:35:35,488 # Package would be ignored # 2025-09-09T00:35:35,488 ############################ 2025-09-09T00:35:35,488 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,488 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,488 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,488 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-09T00:35:35,489 to the `packages` configuration field. 2025-09-09T00:35:35,489 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,489 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,489 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,489 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,489 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,489 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-09T00:35:35,490 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-09T00:35:35,490 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,490 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,490 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,490 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,490 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,491 even if it does not contain any `.py` files. 2025-09-09T00:35:35,491 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,491 directory, all directories are treated like packages. 2025-09-09T00:35:35,491 ******************************************************************************** 2025-09-09T00:35:35,491 !! 2025-09-09T00:35:35,491 check.warn(importable) 2025-09-09T00:35:35,491 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-09T00:35:35,491 !! 2025-09-09T00:35:35,491 ******************************************************************************** 2025-09-09T00:35:35,491 ############################ 2025-09-09T00:35:35,492 # Package would be ignored # 2025-09-09T00:35:35,492 ############################ 2025-09-09T00:35:35,492 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-09T00:35:35,492 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,492 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,492 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-09T00:35:35,492 to the `packages` configuration field. 2025-09-09T00:35:35,492 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,493 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,493 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,493 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,493 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-09T00:35:35,493 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-09T00:35:35,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,493 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,493 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,494 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,494 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,494 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,494 even if it does not contain any `.py` files. 2025-09-09T00:35:35,494 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,494 directory, all directories are treated like packages. 2025-09-09T00:35:35,494 ******************************************************************************** 2025-09-09T00:35:35,494 !! 2025-09-09T00:35:35,495 check.warn(importable) 2025-09-09T00:35:35,495 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-09T00:35:35,495 !! 2025-09-09T00:35:35,495 ******************************************************************************** 2025-09-09T00:35:35,495 ############################ 2025-09-09T00:35:35,495 # Package would be ignored # 2025-09-09T00:35:35,495 ############################ 2025-09-09T00:35:35,495 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-09T00:35:35,495 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,495 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,495 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-09T00:35:35,496 to the `packages` configuration field. 2025-09-09T00:35:35,496 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,496 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,496 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,496 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,496 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-09T00:35:35,496 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-09T00:35:35,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,497 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,497 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,497 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,497 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,497 even if it does not contain any `.py` files. 2025-09-09T00:35:35,497 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,498 directory, all directories are treated like packages. 2025-09-09T00:35:35,498 ******************************************************************************** 2025-09-09T00:35:35,498 !! 2025-09-09T00:35:35,498 check.warn(importable) 2025-09-09T00:35:35,498 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-09T00:35:35,498 !! 2025-09-09T00:35:35,498 ******************************************************************************** 2025-09-09T00:35:35,498 ############################ 2025-09-09T00:35:35,499 # Package would be ignored # 2025-09-09T00:35:35,499 ############################ 2025-09-09T00:35:35,499 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-09T00:35:35,499 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,499 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,499 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-09T00:35:35,499 to the `packages` configuration field. 2025-09-09T00:35:35,499 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,499 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,500 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,500 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,500 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-09T00:35:35,500 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-09T00:35:35,500 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,500 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,500 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,500 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,501 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,501 even if it does not contain any `.py` files. 2025-09-09T00:35:35,501 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,501 directory, all directories are treated like packages. 2025-09-09T00:35:35,501 ******************************************************************************** 2025-09-09T00:35:35,501 !! 2025-09-09T00:35:35,501 check.warn(importable) 2025-09-09T00:35:35,502 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,502 !! 2025-09-09T00:35:35,502 ******************************************************************************** 2025-09-09T00:35:35,502 ############################ 2025-09-09T00:35:35,502 # Package would be ignored # 2025-09-09T00:35:35,502 ############################ 2025-09-09T00:35:35,502 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-09T00:35:35,502 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,502 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,502 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-09T00:35:35,503 to the `packages` configuration field. 2025-09-09T00:35:35,503 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,503 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,503 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,503 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-09T00:35:35,503 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-09T00:35:35,504 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,504 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,504 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,504 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,504 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,504 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,504 even if it does not contain any `.py` files. 2025-09-09T00:35:35,504 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,505 directory, all directories are treated like packages. 2025-09-09T00:35:35,505 ******************************************************************************** 2025-09-09T00:35:35,505 !! 2025-09-09T00:35:35,505 check.warn(importable) 2025-09-09T00:35:35,505 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-09T00:35:35,505 !! 2025-09-09T00:35:35,505 ******************************************************************************** 2025-09-09T00:35:35,505 ############################ 2025-09-09T00:35:35,505 # Package would be ignored # 2025-09-09T00:35:35,506 ############################ 2025-09-09T00:35:35,506 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-09T00:35:35,506 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,506 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,506 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-09T00:35:35,506 to the `packages` configuration field. 2025-09-09T00:35:35,506 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,506 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,507 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,507 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,507 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-09T00:35:35,507 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-09T00:35:35,507 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,507 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,507 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,508 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,508 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,508 even if it does not contain any `.py` files. 2025-09-09T00:35:35,508 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,508 directory, all directories are treated like packages. 2025-09-09T00:35:35,508 ******************************************************************************** 2025-09-09T00:35:35,508 !! 2025-09-09T00:35:35,508 check.warn(importable) 2025-09-09T00:35:35,509 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,509 !! 2025-09-09T00:35:35,509 ******************************************************************************** 2025-09-09T00:35:35,509 ############################ 2025-09-09T00:35:35,509 # Package would be ignored # 2025-09-09T00:35:35,509 ############################ 2025-09-09T00:35:35,509 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-09T00:35:35,509 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,509 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,509 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-09T00:35:35,510 to the `packages` configuration field. 2025-09-09T00:35:35,510 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,510 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,510 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,510 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,510 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,510 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-09T00:35:35,510 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-09T00:35:35,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,511 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,511 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,511 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,511 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,511 even if it does not contain any `.py` files. 2025-09-09T00:35:35,511 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,512 directory, all directories are treated like packages. 2025-09-09T00:35:35,512 ******************************************************************************** 2025-09-09T00:35:35,512 !! 2025-09-09T00:35:35,512 check.warn(importable) 2025-09-09T00:35:35,512 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,512 !! 2025-09-09T00:35:35,512 ******************************************************************************** 2025-09-09T00:35:35,512 ############################ 2025-09-09T00:35:35,512 # Package would be ignored # 2025-09-09T00:35:35,512 ############################ 2025-09-09T00:35:35,513 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-09T00:35:35,513 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,513 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,513 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-09T00:35:35,513 to the `packages` configuration field. 2025-09-09T00:35:35,513 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,513 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,513 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,514 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,514 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-09T00:35:35,514 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-09T00:35:35,514 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,514 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,514 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,514 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,515 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,515 even if it does not contain any `.py` files. 2025-09-09T00:35:35,515 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,515 directory, all directories are treated like packages. 2025-09-09T00:35:35,515 ******************************************************************************** 2025-09-09T00:35:35,515 !! 2025-09-09T00:35:35,515 check.warn(importable) 2025-09-09T00:35:35,515 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,515 !! 2025-09-09T00:35:35,516 ******************************************************************************** 2025-09-09T00:35:35,516 ############################ 2025-09-09T00:35:35,516 # Package would be ignored # 2025-09-09T00:35:35,516 ############################ 2025-09-09T00:35:35,516 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-09T00:35:35,516 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,516 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,516 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-09T00:35:35,516 to the `packages` configuration field. 2025-09-09T00:35:35,517 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,517 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,517 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,517 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,517 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,517 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-09T00:35:35,517 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-09T00:35:35,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,517 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,518 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,518 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,518 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,518 even if it does not contain any `.py` files. 2025-09-09T00:35:35,518 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,518 directory, all directories are treated like packages. 2025-09-09T00:35:35,518 ******************************************************************************** 2025-09-09T00:35:35,519 !! 2025-09-09T00:35:35,519 check.warn(importable) 2025-09-09T00:35:35,519 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,519 !! 2025-09-09T00:35:35,519 ******************************************************************************** 2025-09-09T00:35:35,519 ############################ 2025-09-09T00:35:35,519 # Package would be ignored # 2025-09-09T00:35:35,519 ############################ 2025-09-09T00:35:35,519 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-09T00:35:35,520 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,520 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,520 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-09T00:35:35,520 to the `packages` configuration field. 2025-09-09T00:35:35,520 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,520 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,520 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,521 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,521 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-09T00:35:35,521 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-09T00:35:35,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,521 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,521 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,521 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,522 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,522 even if it does not contain any `.py` files. 2025-09-09T00:35:35,522 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,522 directory, all directories are treated like packages. 2025-09-09T00:35:35,522 ******************************************************************************** 2025-09-09T00:35:35,522 !! 2025-09-09T00:35:35,522 check.warn(importable) 2025-09-09T00:35:35,522 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,523 !! 2025-09-09T00:35:35,523 ******************************************************************************** 2025-09-09T00:35:35,523 ############################ 2025-09-09T00:35:35,523 # Package would be ignored # 2025-09-09T00:35:35,523 ############################ 2025-09-09T00:35:35,523 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-09T00:35:35,523 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,523 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,523 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-09T00:35:35,524 to the `packages` configuration field. 2025-09-09T00:35:35,524 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,524 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,524 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,524 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,524 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-09T00:35:35,524 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-09T00:35:35,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,525 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,525 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,525 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,525 even if it does not contain any `.py` files. 2025-09-09T00:35:35,525 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,526 directory, all directories are treated like packages. 2025-09-09T00:35:35,526 ******************************************************************************** 2025-09-09T00:35:35,526 !! 2025-09-09T00:35:35,526 check.warn(importable) 2025-09-09T00:35:35,526 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,526 !! 2025-09-09T00:35:35,526 ******************************************************************************** 2025-09-09T00:35:35,526 ############################ 2025-09-09T00:35:35,526 # Package would be ignored # 2025-09-09T00:35:35,527 ############################ 2025-09-09T00:35:35,527 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-09T00:35:35,527 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,527 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,527 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-09T00:35:35,527 to the `packages` configuration field. 2025-09-09T00:35:35,527 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,527 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,528 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,528 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,528 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-09T00:35:35,528 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-09T00:35:35,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,528 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,528 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,528 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,529 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,529 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,529 even if it does not contain any `.py` files. 2025-09-09T00:35:35,529 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,529 directory, all directories are treated like packages. 2025-09-09T00:35:35,529 ******************************************************************************** 2025-09-09T00:35:35,529 !! 2025-09-09T00:35:35,529 check.warn(importable) 2025-09-09T00:35:35,530 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,530 !! 2025-09-09T00:35:35,530 ******************************************************************************** 2025-09-09T00:35:35,530 ############################ 2025-09-09T00:35:35,530 # Package would be ignored # 2025-09-09T00:35:35,530 ############################ 2025-09-09T00:35:35,530 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-09T00:35:35,530 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,530 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,531 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-09T00:35:35,531 to the `packages` configuration field. 2025-09-09T00:35:35,531 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,531 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,531 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,531 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,532 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-09T00:35:35,532 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-09T00:35:35,532 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,532 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,532 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,532 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,533 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,533 even if it does not contain any `.py` files. 2025-09-09T00:35:35,533 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,533 directory, all directories are treated like packages. 2025-09-09T00:35:35,533 ******************************************************************************** 2025-09-09T00:35:35,533 !! 2025-09-09T00:35:35,533 check.warn(importable) 2025-09-09T00:35:35,533 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-09T00:35:35,533 !! 2025-09-09T00:35:35,534 ******************************************************************************** 2025-09-09T00:35:35,534 ############################ 2025-09-09T00:35:35,534 # Package would be ignored # 2025-09-09T00:35:35,534 ############################ 2025-09-09T00:35:35,534 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-09T00:35:35,534 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,534 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,534 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-09T00:35:35,534 to the `packages` configuration field. 2025-09-09T00:35:35,534 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,535 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,535 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,535 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,535 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-09T00:35:35,535 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-09T00:35:35,535 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,536 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,536 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,536 even if it does not contain any `.py` files. 2025-09-09T00:35:35,536 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,536 directory, all directories are treated like packages. 2025-09-09T00:35:35,537 ******************************************************************************** 2025-09-09T00:35:35,537 !! 2025-09-09T00:35:35,537 check.warn(importable) 2025-09-09T00:35:35,537 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-09T00:35:35,537 !! 2025-09-09T00:35:35,537 ******************************************************************************** 2025-09-09T00:35:35,537 ############################ 2025-09-09T00:35:35,537 # Package would be ignored # 2025-09-09T00:35:35,537 ############################ 2025-09-09T00:35:35,537 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-09T00:35:35,538 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,538 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,538 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-09T00:35:35,538 to the `packages` configuration field. 2025-09-09T00:35:35,538 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,538 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,538 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,539 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-09T00:35:35,539 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-09T00:35:35,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,539 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,539 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,540 even if it does not contain any `.py` files. 2025-09-09T00:35:35,540 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,540 directory, all directories are treated like packages. 2025-09-09T00:35:35,540 ******************************************************************************** 2025-09-09T00:35:35,540 !! 2025-09-09T00:35:35,540 check.warn(importable) 2025-09-09T00:35:35,540 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-09T00:35:35,541 !! 2025-09-09T00:35:35,541 ******************************************************************************** 2025-09-09T00:35:35,541 ############################ 2025-09-09T00:35:35,541 # Package would be ignored # 2025-09-09T00:35:35,541 ############################ 2025-09-09T00:35:35,541 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-09T00:35:35,541 but it is absent from setuptools' `packages` configuration. 2025-09-09T00:35:35,541 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T00:35:35,541 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-09T00:35:35,542 to the `packages` configuration field. 2025-09-09T00:35:35,542 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T00:35:35,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T00:35:35,542 instead of `find_packages(...)`/`find:`). 2025-09-09T00:35:35,542 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T00:35:35,542 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T00:35:35,542 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-09T00:35:35,542 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-09T00:35:35,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T00:35:35,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T00:35:35,543 combination with a more fine grained `package-data` configuration. 2025-09-09T00:35:35,543 You can read more about "package data files" on setuptools documentation page: 2025-09-09T00:35:35,543 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T00:35:35,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T00:35:35,543 even if it does not contain any `.py` files. 2025-09-09T00:35:35,543 On the other hand, currently there is no concept of package data 2025-09-09T00:35:35,544 directory, all directories are treated like packages. 2025-09-09T00:35:35,544 ******************************************************************************** 2025-09-09T00:35:35,544 !! 2025-09-09T00:35:35,544 check.warn(importable) 2025-09-09T00:35:35,544 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T00:35:35,544 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T00:35:35,544 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T00:35:35,544 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T00:35:35,544 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T00:35:35,544 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T00:35:35,545 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T00:35:35,545 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T00:35:35,545 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T00:35:35,545 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T00:35:35,546 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T00:35:35,546 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,546 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,547 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,547 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,549 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,549 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,550 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,551 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,552 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T00:35:35,554 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T00:35:35,554 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T00:35:35,555 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T00:35:35,556 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,556 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,557 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,561 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,561 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,563 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,563 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,564 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,565 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,565 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,566 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,566 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,567 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,567 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T00:35:35,568 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,568 copying lightdock/test/prep/golden_data/3p0g/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,569 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,570 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,570 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,572 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,572 copying lightdock/test/prep/golden_data/3p0g/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,574 copying lightdock/test/prep/golden_data/3p0g/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,574 copying lightdock/test/prep/golden_data/3p0g/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T00:35:35,575 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,575 copying lightdock/test/prep/golden_data/3p0g/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,575 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,576 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,577 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,577 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,578 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,578 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T00:35:35,579 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,579 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,580 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,580 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,581 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,582 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T00:35:35,582 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T00:35:35,582 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T00:35:35,583 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T00:35:35,584 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T00:35:35,584 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T00:35:35,585 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,585 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,585 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,586 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,587 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,588 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,588 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,589 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,589 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,590 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,590 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,591 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,591 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,592 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,592 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T00:35:35,593 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T00:35:35,593 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T00:35:35,594 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T00:35:35,594 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,594 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,595 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,596 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,597 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,597 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,598 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,598 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,599 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,600 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,601 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T00:35:35,601 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,601 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,602 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,602 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,603 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,604 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,604 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,605 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,605 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,606 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,606 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,607 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,608 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,608 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,609 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,609 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,610 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T00:35:35,610 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T00:35:35,611 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T00:35:35,611 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T00:35:35,612 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T00:35:35,612 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T00:35:35,613 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T00:35:35,613 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T00:35:35,613 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T00:35:35,614 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T00:35:35,614 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T00:35:35,615 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T00:35:35,615 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T00:35:35,616 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T00:35:35,616 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T00:35:35,617 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T00:35:35,617 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,617 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,618 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,619 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,620 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,620 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,621 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,622 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,623 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,623 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T00:35:35,624 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T00:35:35,624 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T00:35:35,624 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T00:35:35,625 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T00:35:35,626 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T00:35:35,626 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T00:35:35,626 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T00:35:35,627 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T00:35:35,627 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,628 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,628 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,629 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,630 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,630 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,631 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,632 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,633 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,633 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,634 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T00:35:35,634 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T00:35:35,634 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T00:35:35,635 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T00:35:35,636 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T00:35:35,636 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T00:35:35,637 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T00:35:35,637 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T00:35:35,637 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T00:35:35,638 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,638 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,639 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,640 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,641 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,641 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,642 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,642 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,643 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,644 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,645 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T00:35:35,645 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,645 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,646 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,646 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,647 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,648 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,648 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,649 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,649 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,650 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,651 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,651 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,652 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,652 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,653 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,653 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,654 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T00:35:35,654 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T00:35:35,655 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T00:35:35,655 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T00:35:35,656 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T00:35:35,656 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T00:35:35,657 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T00:35:35,657 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T00:35:35,657 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T00:35:35,658 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T00:35:35,658 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T00:35:35,659 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T00:35:35,659 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T00:35:35,660 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T00:35:35,660 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T00:35:35,661 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T00:35:35,661 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,662 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,662 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,663 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,664 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,664 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,665 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,666 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,667 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,667 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,668 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T00:35:35,668 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T00:35:35,668 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T00:35:35,669 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T00:35:35,670 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T00:35:35,670 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T00:35:35,671 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T00:35:35,671 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T00:35:35,671 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T00:35:35,672 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,672 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,673 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,675 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,675 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,676 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,676 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,678 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,679 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,680 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T00:35:35,680 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T00:35:35,680 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T00:35:35,681 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T00:35:35,682 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T00:35:35,682 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T00:35:35,683 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T00:35:35,683 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T00:35:35,683 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T00:35:35,684 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,684 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,685 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,687 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,687 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,688 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,688 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,690 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,691 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,692 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,696 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T00:35:35,697 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T00:35:35,697 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T00:35:35,698 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T00:35:35,698 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T00:35:35,699 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T00:35:35,700 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T00:35:35,700 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T00:35:35,701 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T00:35:35,701 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,701 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,702 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,703 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,704 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,704 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,705 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,705 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,706 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,707 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,707 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T00:35:35,708 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,708 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,709 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,709 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,710 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,711 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,711 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,712 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,712 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,713 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,713 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,714 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,715 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,715 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,716 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,716 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,717 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T00:35:35,717 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T00:35:35,717 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T00:35:35,718 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T00:35:35,719 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T00:35:35,719 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T00:35:35,719 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T00:35:35,720 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T00:35:35,720 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T00:35:35,721 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T00:35:35,721 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T00:35:35,722 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T00:35:35,722 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T00:35:35,723 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T00:35:35,723 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T00:35:35,724 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T00:35:35,724 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,724 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,725 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,726 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,726 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,727 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,728 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,729 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,729 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,730 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,730 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T00:35:35,731 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T00:35:35,731 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T00:35:35,732 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T00:35:35,732 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T00:35:35,733 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T00:35:35,733 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T00:35:35,734 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T00:35:35,734 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T00:35:35,735 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T00:35:35,735 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,735 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,736 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,737 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,738 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,738 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,739 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,739 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,740 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,741 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,742 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T00:35:35,742 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T00:35:35,742 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T00:35:35,743 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T00:35:35,743 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T00:35:35,744 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T00:35:35,744 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T00:35:35,745 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T00:35:35,745 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T00:35:35,746 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,746 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,747 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,748 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,748 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,749 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,750 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,750 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,751 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,752 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,752 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T00:35:35,753 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T00:35:35,753 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T00:35:35,753 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T00:35:35,754 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T00:35:35,755 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T00:35:35,755 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T00:35:35,755 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T00:35:35,756 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T00:35:35,757 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T00:35:35,757 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,757 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,758 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,759 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,760 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,760 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,761 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,761 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,763 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,763 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,764 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T00:35:35,764 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T00:35:35,764 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T00:35:35,765 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T00:35:35,765 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T00:35:35,766 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T00:35:35,767 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T00:35:35,767 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T00:35:35,767 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T00:35:35,768 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,768 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,769 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,770 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,770 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,771 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,772 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,772 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,773 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,774 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,774 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T00:35:35,775 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T00:35:35,775 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T00:35:35,776 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T00:35:35,776 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T00:35:35,777 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T00:35:35,777 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T00:35:35,777 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T00:35:35,778 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T00:35:35,779 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,779 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,779 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,781 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,781 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,782 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,783 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,784 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,784 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,785 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T00:35:35,785 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T00:35:35,786 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T00:35:35,786 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T00:35:35,787 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T00:35:35,787 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T00:35:35,788 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T00:35:35,788 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T00:35:35,788 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T00:35:35,789 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,789 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,790 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,791 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,791 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,792 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,793 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,793 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,794 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,795 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,795 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T00:35:35,796 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T00:35:35,796 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T00:35:35,797 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T00:35:35,797 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T00:35:35,798 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T00:35:35,798 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T00:35:35,798 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T00:35:35,799 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T00:35:35,800 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,800 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,801 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,801 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,803 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,804 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,805 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,805 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,806 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,807 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,808 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,808 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T00:35:35,809 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T00:35:35,809 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T00:35:35,810 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T00:35:35,810 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T00:35:35,811 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T00:35:35,811 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T00:35:35,812 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T00:35:35,812 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T00:35:35,813 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,813 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,814 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,815 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,815 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,816 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,816 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,817 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,818 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,819 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T00:35:35,819 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T00:35:35,819 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T00:35:35,820 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T00:35:35,821 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T00:35:35,821 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T00:35:35,822 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T00:35:35,822 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T00:35:35,823 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T00:35:35,823 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T00:35:35,824 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,824 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,825 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,825 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,827 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,828 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,829 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,829 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,830 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,830 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T00:35:35,831 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T00:35:35,831 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T00:35:35,832 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T00:35:35,832 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T00:35:35,833 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T00:35:35,833 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T00:35:35,833 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T00:35:35,834 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T00:35:35,834 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,835 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,835 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,836 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,837 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,838 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,839 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,839 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,840 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,843 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T00:35:35,843 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,843 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,844 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,844 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,845 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,845 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,846 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,847 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,847 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,848 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,848 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,849 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,849 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,850 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,850 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,851 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,851 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T00:35:35,852 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,852 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,855 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,858 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,858 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,860 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,861 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,863 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T00:35:35,863 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,864 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,864 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,865 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,865 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,866 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,866 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,867 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,867 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,868 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,868 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,869 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,869 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,870 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,871 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,871 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,872 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,872 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,873 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,873 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,874 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,874 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,875 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,875 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,876 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,876 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,877 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,877 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,878 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,879 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,879 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,880 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,880 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,881 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,881 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,882 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,882 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,883 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,883 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,884 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,884 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,885 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,885 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,886 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T00:35:35,887 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,887 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,890 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,892 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,893 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,895 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,896 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,897 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,898 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T00:35:35,899 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,899 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,899 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,900 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,901 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,901 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,902 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,902 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,903 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,903 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,904 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,904 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,905 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,906 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,906 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,907 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,907 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,908 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,908 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,909 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,909 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,910 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,910 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,911 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,911 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,912 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,913 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,913 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,914 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,914 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,915 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,915 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,916 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,916 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,917 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,917 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,918 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,918 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T00:35:35,919 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,919 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,920 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,921 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,922 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,922 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,924 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,924 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,925 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,927 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,928 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T00:35:35,928 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,928 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,929 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,930 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,930 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,931 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,931 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,932 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T00:35:35,932 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,932 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,936 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,937 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,938 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,939 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,939 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,940 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,940 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,942 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,942 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T00:35:35,943 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T00:35:35,943 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T00:35:35,943 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T00:35:35,944 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T00:35:35,945 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T00:35:35,946 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T00:35:35,946 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T00:35:35,946 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T00:35:35,947 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,947 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,948 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,949 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,949 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,950 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,951 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,952 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,952 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,953 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T00:35:35,953 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T00:35:35,954 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T00:35:35,954 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T00:35:35,955 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T00:35:35,955 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T00:35:35,956 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T00:35:35,956 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T00:35:35,957 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T00:35:35,957 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,957 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,961 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,962 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,963 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,963 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,964 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,965 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,965 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,966 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,967 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T00:35:35,967 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T00:35:35,967 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T00:35:35,968 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T00:35:35,969 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T00:35:35,970 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T00:35:35,970 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T00:35:35,971 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T00:35:35,971 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T00:35:35,972 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T00:35:35,972 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T00:35:35,972 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T00:35:35,973 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T00:35:35,974 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T00:35:35,975 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T00:35:35,975 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T00:35:35,993 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T00:35:36,014 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T00:35:36,016 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T00:35:36,016 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T00:35:36,018 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T00:35:36,019 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,019 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,021 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,021 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,022 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,023 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,024 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,025 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,025 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,026 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,030 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,030 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,031 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,032 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,032 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,033 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,034 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,034 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,035 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,035 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T00:35:36,036 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T00:35:36,036 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T00:35:36,037 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T00:35:36,038 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T00:35:36,040 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,040 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,041 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,042 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,042 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,043 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,043 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,044 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,045 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,045 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,046 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,046 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,047 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,048 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T00:35:36,048 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T00:35:36,048 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T00:35:36,049 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T00:35:36,049 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T00:35:36,050 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T00:35:36,050 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T00:35:36,051 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T00:35:36,052 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T00:35:36,052 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T00:35:36,052 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T00:35:36,053 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T00:35:36,054 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T00:35:36,054 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T00:35:36,054 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T00:35:36,055 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T00:35:36,056 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T00:35:36,056 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,056 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,057 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,058 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,058 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,059 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,061 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,062 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,063 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,064 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,065 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,066 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,068 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,069 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T00:35:36,070 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T00:35:36,070 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T00:35:36,071 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T00:35:36,071 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T00:35:36,072 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T00:35:36,072 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T00:35:36,074 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T00:35:36,076 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,076 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,076 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,077 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,078 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,079 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,081 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,083 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,084 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,086 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,088 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,089 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,091 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,093 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,094 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,096 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,098 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,100 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,101 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,103 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,105 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,106 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,108 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,110 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,111 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,113 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,115 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,116 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,118 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,120 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,121 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,123 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,125 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,126 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,128 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,130 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,132 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,133 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,135 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,137 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,138 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,140 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,142 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,143 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,145 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,147 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,148 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,150 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,152 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,154 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,155 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,157 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,159 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,160 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T00:35:36,162 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,162 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,163 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,163 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,164 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,166 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,167 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,169 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,171 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,172 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,174 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,176 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,177 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,179 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,181 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,183 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,184 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,186 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,188 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,189 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,191 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,193 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,194 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,196 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,198 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,199 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,201 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,203 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,204 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,206 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,208 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,209 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,211 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,213 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,215 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,216 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,218 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,220 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,221 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,223 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,225 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,226 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,228 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,230 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,231 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,233 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,235 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,236 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,238 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,240 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,242 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,243 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,245 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,247 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T00:35:36,248 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,249 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,249 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,250 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,251 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,252 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,254 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,256 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,257 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,259 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,261 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,262 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,264 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,266 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,267 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,269 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,271 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,273 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,274 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,276 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,278 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,279 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,281 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,283 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,284 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,286 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,288 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,289 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,291 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,293 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,294 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,296 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,298 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,299 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,301 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,303 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,304 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,306 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,308 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,309 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,311 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,313 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,314 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,316 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,318 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,319 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,321 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,323 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,324 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,326 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,328 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,329 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,331 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,333 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T00:35:36,334 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,335 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,335 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,336 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,336 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,338 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,340 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,341 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,343 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,345 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,346 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,348 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,350 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,352 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,353 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,355 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,357 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,358 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,360 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,362 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,363 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,365 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,367 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,368 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,370 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,372 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,373 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,375 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,377 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,378 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,380 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,382 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,384 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,385 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,387 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,389 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,390 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,392 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,394 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,395 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,397 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,399 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,401 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,402 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,404 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,406 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,407 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,409 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,411 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,412 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,414 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,416 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,417 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,419 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T00:35:36,421 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,421 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,422 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,423 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,423 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,424 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,425 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,426 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T00:35:36,427 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T00:35:36,427 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T00:35:36,428 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T00:35:36,429 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,429 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,430 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,431 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,432 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,433 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,434 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,438 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,438 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,439 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,440 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,442 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,444 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,445 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,447 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,449 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,451 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,452 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,454 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T00:35:36,456 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,456 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,457 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,458 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,459 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,462 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T00:35:36,463 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T00:35:36,463 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T00:35:36,464 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T00:35:36,465 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T00:35:36,466 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T00:35:36,468 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,468 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,469 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,470 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,470 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,471 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,472 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,472 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,473 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,474 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,475 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,475 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,476 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,477 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,477 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,478 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,479 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,479 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T00:35:36,480 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T00:35:36,480 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T00:35:36,481 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T00:35:36,482 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T00:35:36,482 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T00:35:36,483 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T00:35:36,483 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T00:35:36,484 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T00:35:36,484 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T00:35:36,484 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T00:35:36,485 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T00:35:36,485 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T00:35:36,486 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T00:35:36,486 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T00:35:36,487 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T00:35:36,487 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T00:35:36,511 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T00:35:36,511 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T00:35:36,537 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T00:35:36,553 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T00:35:36,553 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T00:35:36,578 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T00:35:36,579 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T00:35:36,579 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T00:35:36,580 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T00:35:36,581 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T00:35:36,582 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T00:35:36,582 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T00:35:36,583 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T00:35:36,584 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T00:35:36,585 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:36,586 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:36,588 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:36,589 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:36,590 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:36,591 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:36,592 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T00:35:36,607 running build_ext 2025-09-09T00:35:36,958 building 'lightdock.mathutil.cython.cutil' extension 2025-09-09T00:35:36,959 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T00:35:36,959 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-09T00:35:37,316 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-09T00:35:37,316 196 | #include "longintrepr.h" 2025-09-09T00:35:37,316 | ^~~~~~~~~~~~~~~ 2025-09-09T00:35:37,316 compilation terminated. 2025-09-09T00:35:37,319 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-09T00:35:37,496 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T00:35:37,507 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T00:35:37,507 exec(compile('"'"''"'"''"'"' 2025-09-09T00:35:37,507 # This is -- a caller that pip uses to run setup.py 2025-09-09T00:35:37,507 # 2025-09-09T00:35:37,507 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T00:35:37,507 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T00:35:37,507 # - It provides a clear error message when setuptools is not installed. 2025-09-09T00:35:37,507 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T00:35:37,507 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T00:35:37,507 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T00:35:37,507 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T00:35:37,507 import os, sys, tokenize, traceback 2025-09-09T00:35:37,507 2025-09-09T00:35:37,507 try: 2025-09-09T00:35:37,507 import setuptools 2025-09-09T00:35:37,507 except ImportError: 2025-09-09T00:35:37,507 print( 2025-09-09T00:35:37,507 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T00:35:37,507 "the build environment with exception:", 2025-09-09T00:35:37,507 file=sys.stderr, 2025-09-09T00:35:37,507 ) 2025-09-09T00:35:37,507 traceback.print_exc() 2025-09-09T00:35:37,507 sys.exit(1) 2025-09-09T00:35:37,507 2025-09-09T00:35:37,507 __file__ = %r 2025-09-09T00:35:37,507 sys.argv[0] = __file__ 2025-09-09T00:35:37,507 2025-09-09T00:35:37,507 if os.path.exists(__file__): 2025-09-09T00:35:37,507 filename = __file__ 2025-09-09T00:35:37,507 with tokenize.open(__file__) as f: 2025-09-09T00:35:37,507 setup_py_code = f.read() 2025-09-09T00:35:37,507 else: 2025-09-09T00:35:37,507 filename = "" 2025-09-09T00:35:37,507 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T00:35:37,507 2025-09-09T00:35:37,507 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T00:35:37,507 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-g0ldgdsj[/] 2025-09-09T00:35:37,508 [bold magenta]cwd[/]: /tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/ 2025-09-09T00:35:37,508 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-09T00:35:37,508 ERROR: Failed building wheel for lightdock 2025-09-09T00:35:37,509 Running setup.py clean for lightdock 2025-09-09T00:35:37,510 Running command python setup.py clean 2025-09-09T00:35:38,027 /tmp/pip-wheel-3s7fx1pt/lightdock_a12194268a0e4571b29694f173289b2f/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T00:35:38,027 !! 2025-09-09T00:35:38,027 ******************************************************************************** 2025-09-09T00:35:38,027 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T00:35:38,027 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T00:35:38,027 calls to avoid build errors in the future. 2025-09-09T00:35:38,028 ******************************************************************************** 2025-09-09T00:35:38,028 !! 2025-09-09T00:35:38,028 from setuptools.command.test import test as TestCommand 2025-09-09T00:35:38,373 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T00:35:38,373 !! 2025-09-09T00:35:38,374 ******************************************************************************** 2025-09-09T00:35:38,374 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T00:35:38,374 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T00:35:38,374 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T00:35:38,374 or your builds will no longer be supported. 2025-09-09T00:35:38,374 ******************************************************************************** 2025-09-09T00:35:38,375 !! 2025-09-09T00:35:38,375 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T00:35:39,227 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T00:35:39,227 !! 2025-09-09T00:35:39,227 ******************************************************************************** 2025-09-09T00:35:39,227 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T00:35:39,227 License :: Free For Educational Use 2025-09-09T00:35:39,227 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T00:35:39,228 ******************************************************************************** 2025-09-09T00:35:39,228 !! 2025-09-09T00:35:39,228 self._finalize_license_expression() 2025-09-09T00:35:39,304 running clean 2025-09-09T00:35:39,452 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T00:35:39,452 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T00:35:39,538 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T00:35:39,538 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T00:35:39,539 removing 'build' 2025-09-09T00:35:39,676 Failed to build lightdock 2025-09-09T00:35:39,677 ERROR: Failed to build one or more wheels 2025-09-09T00:35:39,678 Exception information: 2025-09-09T00:35:39,678 Traceback (most recent call last): 2025-09-09T00:35:39,678 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T00:35:39,678 status = _inner_run() 2025-09-09T00:35:39,678 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T00:35:39,678 return self.run(options, args) 2025-09-09T00:35:39,678 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T00:35:39,678 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T00:35:39,678 return func(self, options, args) 2025-09-09T00:35:39,678 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T00:35:39,678 raise CommandError("Failed to build one or more wheels") 2025-09-09T00:35:39,678 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T00:35:39,682 Removed build tracker: '/tmp/pip-build-tracker-qf_jc3w1'