2025-09-09T01:36:07,316 Created temporary directory: /tmp/pip-build-tracker-k5ld02og
2025-09-09T01:36:07,317 Initialized build tracking at /tmp/pip-build-tracker-k5ld02og
2025-09-09T01:36:07,317 Created build tracker: /tmp/pip-build-tracker-k5ld02og
2025-09-09T01:36:07,317 Entered build tracker: /tmp/pip-build-tracker-k5ld02og
2025-09-09T01:36:07,317 Created temporary directory: /tmp/pip-wheel-x4p9vkbo
2025-09-09T01:36:07,320 Created temporary directory: /tmp/pip-ephem-wheel-cache-2liu_f91
2025-09-09T01:36:07,386 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-09T01:36:07,389 2 location(s) to search for versions of pyxmolpp2:
2025-09-09T01:36:07,389 * https://pypi.org/simple/pyxmolpp2/
2025-09-09T01:36:07,389 * https://www.piwheels.org/simple/pyxmolpp2/
2025-09-09T01:36:07,389 Fetching project page and analyzing links: https://pypi.org/simple/pyxmolpp2/
2025-09-09T01:36:07,390 Getting page https://pypi.org/simple/pyxmolpp2/
2025-09-09T01:36:07,391 Found index url https://pypi.org/simple/
2025-09-09T01:36:07,461 Fetched page https://pypi.org/simple/pyxmolpp2/ as application/vnd.pypi.simple.v1+json
2025-09-09T01:36:07,466   Found link https://files.pythonhosted.org/packages/41/1d/65a5e96d7d0c86d687b4e7e8d10ac232f573e14b9d1884111ebd1a477502/pyxmolpp2-0.0.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.0.1
2025-09-09T01:36:07,467   Found link https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.0
2025-09-09T01:36:07,467   Found link https://files.pythonhosted.org/packages/49/94/6e7b42f4898aff76225a6e7ac3148dd53fd871a8cf1fa87876b5e5661fe4/pyxmolpp2-0.1.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.1
2025-09-09T01:36:07,467   Found link https://files.pythonhosted.org/packages/d9/89/7e348a861f1cbf78307f4617881c0996e74b38ab6f1d5d927b5be3c8b934/pyxmolpp2-0.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.2.0
2025-09-09T01:36:07,467   Found link https://files.pythonhosted.org/packages/8c/89/16cf719b01cb66c3f62f5540abeca7bc26a1dbe7cd83c048d94dd4c60c37/pyxmolpp2-0.3.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev0
2025-09-09T01:36:07,468   Found link https://files.pythonhosted.org/packages/32/94/5d324e82f3785ea81d6913a781e674f95995cbaa54ec32171d0da3056f1c/pyxmolpp2-0.3.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev1
2025-09-09T01:36:07,468   Found link https://files.pythonhosted.org/packages/66/fa/f3e3cd5cdf297b37e10a8131075358a3e663831b965ce71900122e765d06/pyxmolpp2-0.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0
2025-09-09T01:36:07,468   Found link https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.4.0
2025-09-09T01:36:07,468   Found link https://files.pythonhosted.org/packages/ea/1d/22d1b9eff0ed0b73bb8ba213c459a8818103847199add714dec7c0862c9b/pyxmolpp2-0.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.0
2025-09-09T01:36:07,468   Found link https://files.pythonhosted.org/packages/fb/26/6420cdf2349c7bbdf98f58cdb260e1ed0dee55d290cdab6b79d99b457ef9/pyxmolpp2-0.6.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.1
2025-09-09T01:36:07,469   Found link https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.0
2025-09-09T01:36:07,469   Found link https://files.pythonhosted.org/packages/7b/36/aac554b63b1e7fd94ead8a17af4a3d968b9ebab94c905369d5ec20a140f0/pyxmolpp2-0.7.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.1
2025-09-09T01:36:07,469   Found link https://files.pythonhosted.org/packages/e0/ad/0e16148eed09fc4190458935fbbf948aaa2794d1620842f0e3fc3aaa7f14/pyxmolpp2-0.8.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.0
2025-09-09T01:36:07,469   Found link https://files.pythonhosted.org/packages/1a/97/f5a5894f690501edb1f32ce0373f364abd70a55293b4222a2e8fd2b62b08/pyxmolpp2-0.8.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.1
2025-09-09T01:36:07,470   Found link https://files.pythonhosted.org/packages/c7/ed/0784103f8a79a3c24b71e560ef517c623b029a04c2c4f67820a70bc68f27/pyxmolpp2-0.8.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.2
2025-09-09T01:36:07,470   Found link https://files.pythonhosted.org/packages/85/17/8ab6537831012139ee04eaba92e3eb2b1724a81c3ed27f191b3d28f6789c/pyxmolpp2-0.9.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0
2025-09-09T01:36:07,470   Found link https://files.pythonhosted.org/packages/55/4b/d6906a0c33681b8f03fa9497cd40a74b069c7393351927dd772503d0ecfb/pyxmolpp2-0.9.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0.post1
2025-09-09T01:36:07,470   Found link https://files.pythonhosted.org/packages/b7/9b/fb4bb3e07ea292b34f258da0a9f08ae96f18a990477d2f7714319dc11bb1/pyxmolpp2-0.10.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.0
2025-09-09T01:36:07,470   Found link https://files.pythonhosted.org/packages/50/38/47ab868258a00a5d017424f8d5456a3718a475f1a854bdc999df7f116075/pyxmolpp2-0.10.1.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post1
2025-09-09T01:36:07,471   Found link https://files.pythonhosted.org/packages/26/fc/9e70d088b5e6fd688e01c0f13ac748d813f813b8a358bacb8eb66d1971fb/pyxmolpp2-0.10.1.post2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post2
2025-09-09T01:36:07,471   Found link https://files.pythonhosted.org/packages/64/1e/ab2524f122b9966e8c51e2228fdde7f00d7475eec722a27b80aa3e26bfad/pyxmolpp2-0.10.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.2
2025-09-09T01:36:07,471   Found link https://files.pythonhosted.org/packages/ac/ac/417e76e0eb127e941fb6599915dd543a50e115925180fe97c83a6947ef5d/pyxmolpp2-0.10.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.3
2025-09-09T01:36:07,471   Found link https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.4
2025-09-09T01:36:07,472   Found link https://files.pythonhosted.org/packages/3a/2c/8275c969590e230dd2c56daab6e40d236df9736f268aa121ea426c97f819/pyxmolpp2-1.0.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev1
2025-09-09T01:36:07,472   Found link https://files.pythonhosted.org/packages/78/a7/ea6c951361316cf343a0f16da27f031ab2cfb16c90159ac52691540873fe/pyxmolpp2-1.0.0.dev3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev3
2025-09-09T01:36:07,472   Found link https://files.pythonhosted.org/packages/dd/96/b6aa5603b5f40b892572e42338b23a75a78c162ec958f75f429cc4d05f34/pyxmolpp2-1.0.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0
2025-09-09T01:36:07,472   Found link https://files.pythonhosted.org/packages/b6/4f/9e63388cb7670452069a038097371bd5c87ea665ea9f9cd2b3009498ab0f/pyxmolpp2-1.1.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.dev0
2025-09-09T01:36:07,472   Found link https://files.pythonhosted.org/packages/07/ef/f93acfeedd3cfd180366afa66c555ef0ad5f59daa22a023f7d56a37b3774/pyxmolpp2-1.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0
2025-09-09T01:36:07,473   Found link https://files.pythonhosted.org/packages/40/25/974e02ffd74a29b48d37f7ead5988c4fc31554ab2439361dbe6ade50df5c/pyxmolpp2-1.1.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.post1
2025-09-09T01:36:07,473   Found link https://files.pythonhosted.org/packages/94/eb/8b82d34f5f0fff1ae0ee57db7bc01d5c582896a21aa6c23a0691f8dd2cef/pyxmolpp2-1.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.2.0
2025-09-09T01:36:07,473   Found link https://files.pythonhosted.org/packages/8e/37/8e017030208308e0c9b96ab4799e06229a1bc3e30eb5931aa65d7bd44fc6/pyxmolpp2-1.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.3.0
2025-09-09T01:36:07,473   Found link https://files.pythonhosted.org/packages/69/d9/818b1d2533d74bbc1b571061bc6eadb3e8179ad45f98b996e2e752bbb8d7/pyxmolpp2-1.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.4.0
2025-09-09T01:36:07,474   Found link https://files.pythonhosted.org/packages/4b/7d/3a0beee575fc48b90d6685200925e081c9f00a80785f6c3399460f7a3a36/pyxmolpp2-1.5.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.0
2025-09-09T01:36:07,474   Found link https://files.pythonhosted.org/packages/5b/2a/67fff35be6b97a56c5c21823a7e98765379b83dfc6f1875e5282cbd85267/pyxmolpp2-1.5.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.2
2025-09-09T01:36:07,474   Found link https://files.pythonhosted.org/packages/ea/be/6ff70c774714c681459f089f77e92bbc13fb9bd068727404f525e4a3dbbb/pyxmolpp2-1.5.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.3
2025-09-09T01:36:07,474   Found link https://files.pythonhosted.org/packages/13/09/0b0c1f7ed58aa7605854268f7eaeadafed70cded0855d450b93fbe278cc0/pyxmolpp2-1.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.6.0
2025-09-09T01:36:07,474   Found link https://files.pythonhosted.org/packages/43/af/adb175fd4c9a52ddfd9e943962e1da8810579bc4a0643db7bfff99b8f8cb/pyxmolpp2-2.0a0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0a0
2025-09-09T01:36:07,475   Found link https://files.pythonhosted.org/packages/bd/65/7f96775c57a613b95a7abae1956572a570e9e488d9bb0b05241338a72774/pyxmolpp2-2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0
2025-09-09T01:36:07,475   Found link https://files.pythonhosted.org/packages/5a/bc/01f71b18a8713194f43920fb0d89e7ae3c219abeb0efc734f0bf3303c86f/pyxmolpp2-2.0.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0.2
2025-09-09T01:36:07,475 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmolpp2/
2025-09-09T01:36:07,475 Getting page https://www.piwheels.org/simple/pyxmolpp2/
2025-09-09T01:36:07,476 Found index url https://www.piwheels.org/simple/
2025-09-09T01:36:07,575 Fetched page https://www.piwheels.org/simple/pyxmolpp2/ as text/html
2025-09-09T01:36:07,577   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-09T01:36:07,577   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-09T01:36:07,577   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-09T01:36:07,577   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-09T01:36:07,577 Skipping link: not a file: https://www.piwheels.org/simple/pyxmolpp2/
2025-09-09T01:36:07,578 Skipping link: not a file: https://pypi.org/simple/pyxmolpp2/
2025-09-09T01:36:07,605 Given no hashes to check 1 links for project 'pyxmolpp2': discarding no candidates
2025-09-09T01:36:07,606 Collecting pyxmolpp2==0.10.4
2025-09-09T01:36:07,607   Created temporary directory: /tmp/pip-unpack-44vwsuuh
2025-09-09T01:36:07,954   Downloading pyxmolpp2-0.10.4.tar.gz (4.7 MB)
2025-09-09T01:36:10,705   Added pyxmolpp2==0.10.4 from https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz to build tracker '/tmp/pip-build-tracker-k5ld02og'
2025-09-09T01:36:10,706   Running setup.py (path:/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py) egg_info for package pyxmolpp2
2025-09-09T01:36:10,706   Created temporary directory: /tmp/pip-pip-egg-info-kbqejv4f
2025-09-09T01:36:10,706   Preparing metadata (setup.py): started
2025-09-09T01:36:10,707   Running command python setup.py egg_info
2025-09-09T01:36:11,406   fatal: not a git repository (or any parent up to mount point /)
2025-09-09T01:36:11,406   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-09T01:36:11,780   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T01:36:11,780   !!

2025-09-09T01:36:11,780           ********************************************************************************
2025-09-09T01:36:11,781           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T01:36:11,781           License :: OSI Approved :: MIT License

2025-09-09T01:36:11,781           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T01:36:11,781           ********************************************************************************

2025-09-09T01:36:11,781   !!
2025-09-09T01:36:11,781     self._finalize_license_expression()
2025-09-09T01:36:11,856   running egg_info
2025-09-09T01:36:11,931   creating /tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info
2025-09-09T01:36:11,931   writing /tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/PKG-INFO
2025-09-09T01:36:11,933   writing dependency_links to /tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/dependency_links.txt
2025-09-09T01:36:11,933   writing top-level names to /tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/top_level.txt
2025-09-09T01:36:11,934   writing manifest file '/tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-09T01:36:12,159   reading manifest file '/tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-09T01:36:12,160   reading manifest template 'MANIFEST.in'
2025-09-09T01:36:12,532   warning: no files found matching '.'
2025-09-09T01:36:12,532   warning: no files found matching '.'
2025-09-09T01:36:12,532   warning: no files found matching '.'
2025-09-09T01:36:12,533   warning: no files found matching '*.cmake'
2025-09-09T01:36:12,539   warning: no previously-included files matching '.git' found anywhere in distribution
2025-09-09T01:36:12,545   warning: no previously-included files matching '.js' found anywhere in distribution
2025-09-09T01:36:12,551   warning: no previously-included files matching '.html' found anywhere in distribution
2025-09-09T01:36:12,557   warning: no previously-included files matching '.png' found anywhere in distribution
2025-09-09T01:36:12,563   warning: no previously-included files matching '.dox' found anywhere in distribution
2025-09-09T01:36:12,654   writing manifest file '/tmp/pip-pip-egg-info-kbqejv4f/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-09T01:36:12,770   Preparing metadata (setup.py): finished with status 'done'
2025-09-09T01:36:12,775   Source in /tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4 has version 0.10.4, which satisfies requirement pyxmolpp2==0.10.4 from https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz
2025-09-09T01:36:12,775   Removed pyxmolpp2==0.10.4 from https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz from build tracker '/tmp/pip-build-tracker-k5ld02og'
2025-09-09T01:36:12,778 Created temporary directory: /tmp/pip-unpack-dxxaltp9
2025-09-09T01:36:12,779 Created temporary directory: /tmp/pip-unpack-lae7ew8h
2025-09-09T01:36:12,779 Building wheels for collected packages: pyxmolpp2
2025-09-09T01:36:12,780   Created temporary directory: /tmp/pip-wheel-qkvvwwm4
2025-09-09T01:36:12,780   DEPRECATION: Building 'pyxmolpp2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyxmolpp2'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-09T01:36:12,781   Building wheel for pyxmolpp2 (setup.py): started
2025-09-09T01:36:12,782   Destination directory: /tmp/pip-wheel-qkvvwwm4
2025-09-09T01:36:12,782   Running command python setup.py bdist_wheel
2025-09-09T01:36:13,496   fatal: not a git repository (or any parent up to mount point /)
2025-09-09T01:36:13,496   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-09T01:36:13,875   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T01:36:13,875   !!

2025-09-09T01:36:13,875           ********************************************************************************
2025-09-09T01:36:13,875           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T01:36:13,875           License :: OSI Approved :: MIT License

2025-09-09T01:36:13,875           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T01:36:13,875           ********************************************************************************

2025-09-09T01:36:13,876   !!
2025-09-09T01:36:13,876     self._finalize_license_expression()
2025-09-09T01:36:13,876   running bdist_wheel
2025-09-09T01:36:14,174   running build
2025-09-09T01:36:14,174   running build_py
2025-09-09T01:36:14,251   creating build/lib.linux-armv7l-cpython-313/tools
2025-09-09T01:36:14,252   copying tools/print_version_number.py -> build/lib.linux-armv7l-cpython-313/tools
2025-09-09T01:36:14,252   copying tools/__init__.py -> build/lib.linux-armv7l-cpython-313/tools
2025-09-09T01:36:14,253   copying tools/write_version_info.py -> build/lib.linux-armv7l-cpython-313/tools
2025-09-09T01:36:14,254   running build_ext
2025-09-09T01:36:14,311   /tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py:27: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
2025-09-09T01:36:14,311     cmake_version = LooseVersion(re.search(r'version\s*([\d.]+)', out.decode()).group(1))
2025-09-09T01:36:14,311   /tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py:28: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
2025-09-09T01:36:14,311     if cmake_version < LooseVersion('3.5.0'):
2025-09-09T01:36:14,356   CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
2025-09-09T01:36:14,357     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-09T01:36:14,357     CMake.

2025-09-09T01:36:14,357     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-09T01:36:14,357     to tell CMake that the project requires at least <min> but has been updated
2025-09-09T01:36:14,357     to work with policies introduced by <max> or earlier.


2025-09-09T01:36:14,623   -- The C compiler identification is GNU 14.2.0
2025-09-09T01:36:14,938   -- The CXX compiler identification is GNU 14.2.0
2025-09-09T01:36:14,991   -- Detecting C compiler ABI info
2025-09-09T01:36:15,416   -- Detecting C compiler ABI info - done
2025-09-09T01:36:15,489   -- Check for working C compiler: /usr/bin/cc - skipped
2025-09-09T01:36:15,491   -- Detecting C compile features
2025-09-09T01:36:15,494   -- Detecting C compile features - done
2025-09-09T01:36:15,566   -- Detecting CXX compiler ABI info
2025-09-09T01:36:16,048   -- Detecting CXX compiler ABI info - done
2025-09-09T01:36:16,123   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2025-09-09T01:36:16,125   -- Detecting CXX compile features
2025-09-09T01:36:16,129   -- Detecting CXX compile features - done
2025-09-09T01:36:16,165   CMake Warning (dev) at CMakeLists.txt:10 (find_package):
2025-09-09T01:36:16,165     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-09T01:36:16,165     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-09T01:36:16,165     the cmake_policy command to set the policy and suppress this warning.

2025-09-09T01:36:16,166   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-09T01:36:16,238   -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5")
2025-09-09T01:36:16,239   CMake Warning (dev) at CMakeLists.txt:11 (find_package):
2025-09-09T01:36:16,240     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-09T01:36:16,240     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-09T01:36:16,240     the cmake_policy command to set the policy and suppress this warning.

2025-09-09T01:36:16,240   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-09T01:36:16,275   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so (found suitable version "3.13.5", minimum required is "3.13")
2025-09-09T01:36:16,275   Using default python version: 3.13.5
2025-09-09T01:36:16,523   CMake Error at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:233 (message):
2025-09-09T01:36:16,524     Could NOT find NetCDF (missing: NetCDF_LIBRARY NetCDF_INCLUDE_DIR)
2025-09-09T01:36:16,524   Call Stack (most recent call first):
2025-09-09T01:36:16,524     /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:603 (_FPHSA_FAILURE_MESSAGE)
2025-09-09T01:36:16,524     cmake/FindNetCDF.cmake:74 (find_package_handle_standard_args)
2025-09-09T01:36:16,524     CMakeLists.txt:17 (find_package)


2025-09-09T01:36:16,526   -- Configuring incomplete, errors occurred!
2025-09-09T01:36:16,550   Traceback (most recent call last):
2025-09-09T01:36:16,559     File "<string>", line 2, in <module>
2025-09-09T01:36:16,559       exec(compile('''
2025-09-09T01:36:16,559       ~~~~^^^^^^^^^^^^
2025-09-09T01:36:16,559       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-09T01:36:16,559       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T01:36:16,559       ...<32 lines>...
2025-09-09T01:36:16,560       exec(compile(setup_py_code, filename, "exec"))
2025-09-09T01:36:16,560       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T01:36:16,560       ''' % ('/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-09T01:36:16,560       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T01:36:16,560     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-09T01:36:16,561     File "/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py", line 67, in <module>
2025-09-09T01:36:16,561       setup(
2025-09-09T01:36:16,561       ~~~~~^
2025-09-09T01:36:16,561           name='pyxmolpp2',
2025-09-09T01:36:16,561           ^^^^^^^^^^^^^^^^^
2025-09-09T01:36:16,561       ...<12 lines>...
2025-09-09T01:36:16,561           ],
2025-09-09T01:36:16,562           ^^
2025-09-09T01:36:16,562       )
2025-09-09T01:36:16,562       ^
2025-09-09T01:36:16,562     File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-09T01:36:16,562       return distutils.core.setup(**attrs)
2025-09-09T01:36:16,562              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,562     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-09T01:36:16,563       return run_commands(dist)
2025-09-09T01:36:16,563     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-09T01:36:16,563       dist.run_commands()
2025-09-09T01:36:16,563       ~~~~~~~~~~~~~~~~~^^
2025-09-09T01:36:16,563     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-09T01:36:16,563       self.run_command(cmd)
2025-09-09T01:36:16,564       ~~~~~~~~~~~~~~~~^^^^^
2025-09-09T01:36:16,564     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T01:36:16,564       super().run_command(command)
2025-09-09T01:36:16,564       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,564     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T01:36:16,564       cmd_obj.run()
2025-09-09T01:36:16,564       ~~~~~~~~~~~^^
2025-09-09T01:36:16,565     File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-09T01:36:16,565       self.run_command("build")
2025-09-09T01:36:16,565       ~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,565     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-09T01:36:16,565       self.distribution.run_command(command)
2025-09-09T01:36:16,565       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,566     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T01:36:16,566       super().run_command(command)
2025-09-09T01:36:16,566       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,566     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T01:36:16,566       cmd_obj.run()
2025-09-09T01:36:16,566       ~~~~~~~~~~~^^
2025-09-09T01:36:16,566     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-09T01:36:16,567       self.run_command(cmd_name)
2025-09-09T01:36:16,567       ~~~~~~~~~~~~~~~~^^^^^^^^^^
2025-09-09T01:36:16,567     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-09T01:36:16,567       self.distribution.run_command(command)
2025-09-09T01:36:16,567       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,567     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T01:36:16,568       super().run_command(command)
2025-09-09T01:36:16,568       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T01:36:16,568     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T01:36:16,568       cmd_obj.run()
2025-09-09T01:36:16,568       ~~~~~~~~~~~^^
2025-09-09T01:36:16,568     File "/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py", line 32, in run
2025-09-09T01:36:16,569       self.build_extension(ext)
2025-09-09T01:36:16,569       ~~~~~~~~~~~~~~~~~~~~^^^^^
2025-09-09T01:36:16,569     File "/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py", line 60, in build_extension
2025-09-09T01:36:16,569       subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env)
2025-09-09T01:36:16,569       ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T01:36:16,569     File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
2025-09-09T01:36:16,569       raise CalledProcessError(retcode, cmd)
2025-09-09T01:36:16,570   subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/build/lib.linux-armv7l-cpython-313', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE', '-DCMAKE_INSTALL_RPATH=$ORIGIN', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1.
2025-09-09T01:36:16,678   ERROR: python setup.py bdist_wheel exited with 1
2025-09-09T01:36:16,691   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-09T01:36:16,691   exec(compile('"'"''"'"''"'"'
2025-09-09T01:36:16,691   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-09T01:36:16,691   #
2025-09-09T01:36:16,691   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-09T01:36:16,691   #   import from `distutils.core` to work with newer packaging standards.
2025-09-09T01:36:16,691   # - It provides a clear error message when setuptools is not installed.
2025-09-09T01:36:16,691   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-09T01:36:16,691   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-09T01:36:16,691   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-09T01:36:16,691   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-09T01:36:16,691   import os, sys, tokenize, traceback
2025-09-09T01:36:16,691   
2025-09-09T01:36:16,691   try:
2025-09-09T01:36:16,691       import setuptools
2025-09-09T01:36:16,691   except ImportError:
2025-09-09T01:36:16,691       print(
2025-09-09T01:36:16,691           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-09T01:36:16,691           "the build environment with exception:",
2025-09-09T01:36:16,691           file=sys.stderr,
2025-09-09T01:36:16,691       )
2025-09-09T01:36:16,691       traceback.print_exc()
2025-09-09T01:36:16,691       sys.exit(1)
2025-09-09T01:36:16,691   
2025-09-09T01:36:16,691   __file__ = %r
2025-09-09T01:36:16,691   sys.argv[0] = __file__
2025-09-09T01:36:16,691   
2025-09-09T01:36:16,691   if os.path.exists(__file__):
2025-09-09T01:36:16,691       filename = __file__
2025-09-09T01:36:16,691       with tokenize.open(__file__) as f:
2025-09-09T01:36:16,691           setup_py_code = f.read()
2025-09-09T01:36:16,691   else:
2025-09-09T01:36:16,691       filename = "<auto-generated setuptools caller>"
2025-09-09T01:36:16,691       setup_py_code = "from setuptools import setup; setup()"
2025-09-09T01:36:16,691   
2025-09-09T01:36:16,691   exec(compile(setup_py_code, filename, "exec"))
2025-09-09T01:36:16,691   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-qkvvwwm4[/]
2025-09-09T01:36:16,691   [bold magenta]cwd[/]: /tmp/pip-wheel-x4p9vkbo/pyxmolpp2_4664d03039274330835674f2af1005e4/
2025-09-09T01:36:16,691   Building wheel for pyxmolpp2 (setup.py): finished with status 'error'
2025-09-09T01:36:16,692   ERROR: Failed building wheel for pyxmolpp2
2025-09-09T01:36:16,693   Running setup.py clean for pyxmolpp2
2025-09-09T01:36:16,693   Running command python setup.py clean
2025-09-09T01:36:17,414   fatal: not a git repository (or any parent up to mount point /)
2025-09-09T01:36:17,414   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-09T01:36:17,789   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T01:36:17,789   !!

2025-09-09T01:36:17,789           ********************************************************************************
2025-09-09T01:36:17,789           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T01:36:17,789           License :: OSI Approved :: MIT License

2025-09-09T01:36:17,789           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T01:36:17,789           ********************************************************************************

2025-09-09T01:36:17,790   !!
2025-09-09T01:36:17,790     self._finalize_license_expression()
2025-09-09T01:36:17,865   running clean
2025-09-09T01:36:18,009   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-09T01:36:18,010   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-09T01:36:18,011   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-09T01:36:18,011   'build/scripts-3.13' does not exist -- can't clean it
2025-09-09T01:36:18,011   removing 'build'
2025-09-09T01:36:18,124 Failed to build pyxmolpp2
2025-09-09T01:36:18,125 ERROR: Failed to build one or more wheels
2025-09-09T01:36:18,126 Exception information:
2025-09-09T01:36:18,126 Traceback (most recent call last):
2025-09-09T01:36:18,126   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-09T01:36:18,126     status = _inner_run()
2025-09-09T01:36:18,126   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-09T01:36:18,126     return self.run(options, args)
2025-09-09T01:36:18,126            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-09T01:36:18,126   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-09T01:36:18,126     return func(self, options, args)
2025-09-09T01:36:18,126   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-09T01:36:18,126     raise CommandError("Failed to build one or more wheels")
2025-09-09T01:36:18,126 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-09T01:36:18,130 Removed build tracker: '/tmp/pip-build-tracker-k5ld02og'