2025-09-09T01:51:59,265 Created temporary directory: /tmp/pip-build-tracker-liqpb9gm 2025-09-09T01:51:59,266 Initialized build tracking at /tmp/pip-build-tracker-liqpb9gm 2025-09-09T01:51:59,266 Created build tracker: /tmp/pip-build-tracker-liqpb9gm 2025-09-09T01:51:59,266 Entered build tracker: /tmp/pip-build-tracker-liqpb9gm 2025-09-09T01:51:59,267 Created temporary directory: /tmp/pip-wheel-dg5c78jj 2025-09-09T01:51:59,270 Created temporary directory: /tmp/pip-ephem-wheel-cache-f8ec2ye2 2025-09-09T01:51:59,325 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T01:51:59,328 2 location(s) to search for versions of openbabel: 2025-09-09T01:51:59,328 * https://pypi.org/simple/openbabel/ 2025-09-09T01:51:59,328 * https://www.piwheels.org/simple/openbabel/ 2025-09-09T01:51:59,328 Fetching project page and analyzing links: https://pypi.org/simple/openbabel/ 2025-09-09T01:51:59,328 Getting page https://pypi.org/simple/openbabel/ 2025-09-09T01:51:59,329 Found index url https://pypi.org/simple/ 2025-09-09T01:51:59,474 Fetched page https://pypi.org/simple/openbabel/ as application/vnd.pypi.simple.v1+json 2025-09-09T01:51:59,481 Found link https://files.pythonhosted.org/packages/12/52/bb5e38737d41df09d11818031aa8de58620cd2689e872c9d3127d9eb9e37/openbabel-1.8.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8 2025-09-09T01:51:59,481 Found link https://files.pythonhosted.org/packages/af/63/976ef92f2eb827b0def52a69f537c9fe27754533e1f98735d167448894b2/openbabel-1.8.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.1 2025-09-09T01:51:59,482 Found link https://files.pythonhosted.org/packages/41/46/5572ceaf814ca86894cc7a0847da5e89fc359a2b0970a7015cb67163d64a/openbabel-1.8.2.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.2 2025-09-09T01:51:59,482 Found link https://files.pythonhosted.org/packages/fe/82/63910e38f48178dc6287c07272e9b486b436940d34a4b237a42bf4f7d40f/openbabel-1.8.4.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.4 2025-09-09T01:51:59,482 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/6c/7c/1767429d25a0356867951530f071dcbd6e5605312418f7f5bb14bd46a510/openbabel-2.4.0-cp27-cp27m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,482 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/5a/37/942e55a00f80f2ebdab4c78c83f11445e1f98bf8914a28f3af195eab9a89/openbabel-2.4.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,482 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/5a/1d/d88ae45ac4216ebc96ad06d9f38dc5d697265d818ab056f5586cb1625d85/openbabel-2.4.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/0c/51/4708c4f562a64f7348becd2b72e1dcdc79a8a3ffd05f042bc8a999228549/openbabel-2.4.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/25/45/3c028047d525e149f0b8404d7cdbe85521d8c84edc8479e1a9ef5818fcd7/openbabel-2.4.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/02/27/ad7186bface39f076a2658ead15fea603101c40992524491f2f069f2d669/openbabel-2.4.0-cp35-cp35m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/80/fd/48436d0c173c24ec584589f301037fffe6be4acd6b02fb303cc6f96ebbbd/openbabel-2.4.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e4/ac/5a232012b06c05f33ed0b09e736d6e93479491be6418e279d4d14c4aaa0d/openbabel-2.4.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,483 Found link https://files.pythonhosted.org/packages/ae/af/647b526abc984b4dbb92c170fb8052330036f66f9188f01c7a6170772c26/openbabel-2.4.0.tar.gz (from https://pypi.org/simple/openbabel/), version: 2.4.0 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/d0/f7/c8d0e492ef43a384e711aee93fc33c57f20fddae9e177f5016251ee82197/openbabel-2.4.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f1/cc/c8aa7a2c1839ec8eac008f1aff677fe0e7a9c1fe335fcf6341ec8b639fbb/openbabel-2.4.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/b4/9e/3f3e4fb99974a4c57a74b917c1962c3b85ece78276d539b3944a8f28e86e/openbabel-2.4.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f9/ff/ab0b9b62fe7702bb3cff21ab7181bc31904986776c444c1e2d9a522c7f87/openbabel-2.4.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/ac/41/56090328ebc77c48ca3bc63867d9f0406a66b190091d5f9c2ac826d7076b/openbabel-2.4.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/24/10/9b1519717a985ba77f733f8be8a53f61179562ad32f14b0b978f2321f46c/openbabel-2.4.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,484 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/bc/fa/88f045c889f42272c829c7ecb57a45fba40e4e011186c69e3d3f97bf4487/openbabel-2.4.1-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/b1/be/7d35e887a7b6c79aa6e658cddcf32430cea202bfe7301deff7addfee05e1/openbabel-2.4.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Found link https://files.pythonhosted.org/packages/9c/30/eb9c3d3d3b86981f6c6a7b8eceb6f4a13b9a12673efbc842b7cebe0ce39a/openbabel-2.4.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 2.4.1 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e0/af/2ddb13189563095a1ac917e8ba93ae5dd387487fa22fa2407f71c50788a2/openbabel-3.0.0a1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/08/5c/d89e561c86ff369159c5683b2bafbc63ad65759ffb4a076b99b7ed592f73/openbabel-3.0.0a1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/a8/50/6e3788ab2dcdb6bac56789cd064e17f3f39b2c23b3476826a6cae3b13ea6/openbabel-3.0.0a1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/85/07/461afd0234606736f3ff2c83b8f2de8956748505d1f87d9519fcbdafdd09/openbabel-3.0.0a1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,485 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/b2/80/33b2df12a8de30f352ebe164ce4c5edaca7416f6451e7ec3d259bd0a745d/openbabel-3.0.0a1-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/45/cf/90cb228636c4e136f628e45b571f6c3232ffd3293d1c6e459cbe9f57d132/openbabel-3.0.0a1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/20/83/658c9745dedf61d5670a0b381ae5c575f74764831d175b4b10d7cde9868e/openbabel-3.0.0a1-cp37-cp37m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/11/07/76a50cd698820a62272dab11b0c825712dc896b29a75571581b9f9698e59/openbabel-3.0.0a1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/7d/42/a64ad010f61916dcd1f965ee4a20218103eec70f61b3620b4de0160e1c37/openbabel-3.0.0a1-cp38-cp38-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/65/08/96d1404315da3ab3aff1c4558ba65bbd02e326d29af4b0947efb4f918c4b/openbabel-3.0.0a1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/33/49/9575b9637fe5e27a790c8a88a9fec28aa03bfd11e607eff2bf2d450f3bbf/openbabel-3.0.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,486 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/51/cc/54b5b9f1c74dda56117cedebc68b6910300a802fc1904b7d2d6cecdcddb1/openbabel-3.0.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/10/ae/df0ea01e56ae39ef7ba66642983334c77eb1cb4309e864252976149de68a/openbabel-3.0.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/d0/bb/b2a95ca559f04b32cfb4aa26530aec978af4cc4204a3529925590fbb57ed/openbabel-3.0.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/2f/db/0ab9172ad1be529d614189154566d7e4d6af96a9f3bc71b411d50efc13ba/openbabel-3.0.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/66/5b/083b11614e9995ad7217b564e6532f85927c85f9052973754ae773b58b39/openbabel-3.0.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/2e/b7/faffc7a2f4cc2ab05dc99f3e1868b209a95215e052ddd1a0750564517819/openbabel-3.0.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/3e/12/0c98c5871030100d645e59466399fd7072e60f201a6c4936abae49eaddb7/openbabel-3.0.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,487 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/4e/91/6a64f9a4bb6766f6d7d2e99ad8ccd0a40ba7ff004d594b69b92dd1982675/openbabel-3.1.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/fc/83/70e05bd654e0e5cca1a22b31a434f3fc5ad9cee5dbef0dce44354fe413f5/openbabel-3.1.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/83/af/1d8f8d1616b6d3f7ef3977d9848c4950766ccd8ce82858fa4259998f5754/openbabel-3.1.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/89/26/226b4dd473df6e19c5e8ca8d1af4b85875d59ef571664639935686fcf611/openbabel-3.1.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/31/05/7a11e23bd398c50c8df643dc0fca3a3faf6f144d0c6abf5b072d9d5103ca/openbabel-3.1.1-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/60/d0/9dc7fcac9664546c5086d665a4df499b219238b610edf687a38d41d3bf5c/openbabel-3.1.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,488 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/35/ac/efa0326e86d44ca32e1e5772dcb6669c0c7e328b5cb6e78560e14dacda10/openbabel-3.1.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,489 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f9/33/d1cbfde28c463c53742415ab0f8173913f676ef34c5ab2b525b978c8a848/openbabel-3.1.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,489 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e2/98/17006b394fc7e3aa8b0607e6ab074b768644a217e7be17a13bc58cc31e9d/openbabel-3.1.1-cp38-cp38-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-09T01:51:59,489 Found link https://files.pythonhosted.org/packages/9d/3f/f08f5d1422d74ed0e1e612870b343bfcc26313bdf9efec9165c3ea4b3ae2/openbabel-3.1.1.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 3.1.1.1 2025-09-09T01:51:59,489 Fetching project page and analyzing links: https://www.piwheels.org/simple/openbabel/ 2025-09-09T01:51:59,490 Getting page https://www.piwheels.org/simple/openbabel/ 2025-09-09T01:51:59,491 Found index url https://www.piwheels.org/simple/ 2025-09-09T01:51:59,586 Fetched page https://www.piwheels.org/simple/openbabel/ as text/html 2025-09-09T01:51:59,587 Skipping link: not a file: https://www.piwheels.org/simple/openbabel/ 2025-09-09T01:51:59,587 Skipping link: not a file: https://pypi.org/simple/openbabel/ 2025-09-09T01:51:59,609 Given no hashes to check 1 links for project 'openbabel': discarding no candidates 2025-09-09T01:51:59,610 Collecting openbabel==3.1.1.1 2025-09-09T01:51:59,612 Created temporary directory: /tmp/pip-unpack-gsyzbccn 2025-09-09T01:51:59,676 Downloading openbabel-3.1.1.1.tar.gz (82 kB) 2025-09-09T01:51:59,730 Added openbabel==3.1.1.1 from https://files.pythonhosted.org/packages/9d/3f/f08f5d1422d74ed0e1e612870b343bfcc26313bdf9efec9165c3ea4b3ae2/openbabel-3.1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-liqpb9gm' 2025-09-09T01:51:59,731 Running setup.py (path:/tmp/pip-wheel-dg5c78jj/openbabel_811c0cfbe4604652a91f433f81471638/setup.py) egg_info for package openbabel 2025-09-09T01:51:59,731 Created temporary directory: /tmp/pip-pip-egg-info-jji2w63s 2025-09-09T01:51:59,731 Preparing metadata (setup.py): started 2025-09-09T01:51:59,732 Running command python setup.py egg_info 2025-09-09T01:52:00,829 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:52:00,829 !! 2025-09-09T01:52:00,830 ******************************************************************************** 2025-09-09T01:52:00,830 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:52:00,830 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-09T01:52:00,830 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:52:00,830 ******************************************************************************** 2025-09-09T01:52:00,830 !! 2025-09-09T01:52:00,830 self._finalize_license_expression() 2025-09-09T01:52:00,905 running egg_info 2025-09-09T01:52:00,984 creating /tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info 2025-09-09T01:52:00,985 writing /tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/PKG-INFO 2025-09-09T01:52:00,986 writing dependency_links to /tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/dependency_links.txt 2025-09-09T01:52:00,987 writing top-level names to /tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/top_level.txt 2025-09-09T01:52:00,987 writing manifest file '/tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/SOURCES.txt' 2025-09-09T01:52:01,160 Warning: invalid version number '3.1.1.1'. 2025-09-09T01:52:01,161 Guessing Open Babel location: 2025-09-09T01:52:01,161 - include_dirs: ['/usr/include/python3.13', '/usr/local/include/openbabel3'] 2025-09-09T01:52:01,161 - library_dirs: ['/usr/lib/arm-linux-gnueabihf', '/usr/local/lib'] 2025-09-09T01:52:01,161 reading manifest file '/tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/SOURCES.txt' 2025-09-09T01:52:01,163 writing manifest file '/tmp/pip-pip-egg-info-jji2w63s/openbabel.egg-info/SOURCES.txt' 2025-09-09T01:52:01,275 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T01:52:01,280 Source in /tmp/pip-wheel-dg5c78jj/openbabel_811c0cfbe4604652a91f433f81471638 has version 3.1.1.1, which satisfies requirement openbabel==3.1.1.1 from https://files.pythonhosted.org/packages/9d/3f/f08f5d1422d74ed0e1e612870b343bfcc26313bdf9efec9165c3ea4b3ae2/openbabel-3.1.1.1.tar.gz 2025-09-09T01:52:01,281 Removed openbabel==3.1.1.1 from https://files.pythonhosted.org/packages/9d/3f/f08f5d1422d74ed0e1e612870b343bfcc26313bdf9efec9165c3ea4b3ae2/openbabel-3.1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-liqpb9gm' 2025-09-09T01:52:01,284 Created temporary directory: /tmp/pip-unpack-la4291k8 2025-09-09T01:52:01,285 Created temporary directory: /tmp/pip-unpack-38o05ma8 2025-09-09T01:52:01,285 Building wheels for collected packages: openbabel 2025-09-09T01:52:01,286 Created temporary directory: /tmp/pip-wheel-gq4kuzvt 2025-09-09T01:52:01,286 DEPRECATION: Building 'openbabel' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'openbabel'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T01:52:01,288 Building wheel for openbabel (setup.py): started 2025-09-09T01:52:01,288 Destination directory: /tmp/pip-wheel-gq4kuzvt 2025-09-09T01:52:01,288 Running command python setup.py bdist_wheel 2025-09-09T01:52:02,371 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:52:02,372 !! 2025-09-09T01:52:02,372 ******************************************************************************** 2025-09-09T01:52:02,372 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:52:02,372 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-09T01:52:02,372 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:52:02,372 ******************************************************************************** 2025-09-09T01:52:02,373 !! 2025-09-09T01:52:02,373 self._finalize_license_expression() 2025-09-09T01:52:02,373 running bdist_wheel 2025-09-09T01:52:02,595 running build 2025-09-09T01:52:02,596 running build_ext 2025-09-09T01:52:02,596 Warning: invalid version number '3.1.1.1'. 2025-09-09T01:52:02,596 Guessing Open Babel location: 2025-09-09T01:52:02,596 - include_dirs: ['/usr/include/python3.13', '/usr/local/include/openbabel3'] 2025-09-09T01:52:02,596 - library_dirs: ['/usr/lib/arm-linux-gnueabihf', '/usr/local/lib'] 2025-09-09T01:52:02,924 building 'openbabel._openbabel' extension 2025-09-09T01:52:02,924 swigging openbabel/openbabel-python.i to openbabel/openbabel-python_wrap.cpp 2025-09-09T01:52:02,924 swig -python -c++ -small -O -templatereduce -naturalvar -I/usr/include/python3.13 -I/usr/local/include/openbabel3 -o openbabel/openbabel-python_wrap.cpp openbabel/openbabel-python.i 2025-09-09T01:52:03,426 openbabel/openbabel-python.i:246: Error: Unable to find 'openbabel/babelconfig.h' 2025-09-09T01:52:03,426 openbabel/openbabel-python.i:248: Error: Unable to find 'openbabel/data.h' 2025-09-09T01:52:03,426 openbabel/openbabel-python.i:249: Error: Unable to find 'openbabel/obutil.h' 2025-09-09T01:52:03,426 openbabel/openbabel-python.i:250: Error: Unable to find 'openbabel/math/vector3.h' 2025-09-09T01:52:03,426 openbabel/openbabel-python.i:252: Error: Unable to find 'openbabel/math/matrix3x3.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:253: Error: Unable to find 'openbabel/math/transform3d.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:254: Error: Unable to find 'openbabel/math/spacegroup.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:256: Error: Unable to find 'openbabel/bitvec.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:260: Error: Unable to find 'openbabel/base.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:262: Error: Unable to find 'openbabel/generic.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:265: Error: Unable to find 'openbabel/griddata.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:267: Error: Unable to find 'openbabel/chains.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:268: Error: Unable to find 'openbabel/typer.h' 2025-09-09T01:52:03,427 openbabel/openbabel-python.i:276: Error: Unable to find 'openbabel/plugin.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:281: Error: Unable to find 'openbabel/oberror.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:282: Error: Unable to find 'openbabel/format.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:283: Error: Unable to find 'openbabel/obconversion.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:284: Error: Unable to find 'openbabel/obfunctions.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:295: Error: Unable to find 'openbabel/elements.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:296: Error: Unable to find 'openbabel/residue.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:297: Error: Unable to find 'openbabel/internalcoord.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:298: Error: Unable to find 'openbabel/atom.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:299: Error: Unable to find 'openbabel/bond.h' 2025-09-09T01:52:03,428 openbabel/openbabel-python.i:300: Error: Unable to find 'openbabel/reaction.h' 2025-09-09T01:52:03,429 openbabel/openbabel-python.i:301: Error: Unable to find 'openbabel/reactionfacade.h' 2025-09-09T01:52:03,430 openbabel/openbabel-python.i:319: Error: Unable to find 'openbabel/mol.h' 2025-09-09T01:52:03,431 openbabel/openbabel-python.i:326: Error: Unable to find 'openbabel/ring.h' 2025-09-09T01:52:03,431 openbabel/openbabel-python.i:327: Error: Unable to find 'openbabel/parsmart.h' 2025-09-09T01:52:03,431 openbabel/openbabel-python.i:328: Error: Unable to find 'openbabel/alias.h' 2025-09-09T01:52:03,431 openbabel/openbabel-python.i:330: Error: Unable to find 'openbabel/fingerprint.h' 2025-09-09T01:52:03,431 openbabel/openbabel-python.i:332: Error: Unable to find 'openbabel/descriptor.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:343: Error: Unable to find 'openbabel/forcefield.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:345: Error: Unable to find 'openbabel/builder.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:346: Error: Unable to find 'openbabel/op.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:348: Error: Unable to find 'openbabel/chargemodel.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:351: Error: Unable to find 'openbabel/phmodel.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:352: Error: Unable to find 'openbabel/graphsym.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:353: Error: Unable to find 'openbabel/isomorphism.h' 2025-09-09T01:52:03,433 openbabel/openbabel-python.i:354: Error: Unable to find 'openbabel/query.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:355: Error: Unable to find 'openbabel/canon.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:357: Error: Unable to find 'openbabel/stereo/stereo.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:361: Error: Unable to find 'openbabel/rotor.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:363: Error: Unable to find 'openbabel/rotamer.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:364: Error: Unable to find 'openbabel/spectrophore.h' 2025-09-09T01:52:03,434 openbabel/openbabel-python.i:435: Error: Unable to find 'openbabel/obiter.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:1: Error: Unable to find 'openbabel/stereo/tetranonplanar.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:2: Error: Unable to find 'openbabel/stereo/tetraplanar.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:3: Error: Unable to find 'openbabel/stereo/tetrahedral.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:4: Error: Unable to find 'openbabel/stereo/cistrans.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:5: Error: Unable to find 'openbabel/stereo/squareplanar.h' 2025-09-09T01:52:03,438 openbabel/stereo.i:6: Error: Unable to find 'openbabel/stereo/bindings.h' 2025-09-09T01:52:03,442 Error: SWIG failed. Is Open Babel installed? 2025-09-09T01:52:03,442 You may need to manually specify the location of Open Babel include and library directories. For example: 2025-09-09T01:52:03,442 python setup.py build_ext -I/usr/local/include/openbabel3 -L/usr/local/lib 2025-09-09T01:52:03,442 python setup.py install 2025-09-09T01:52:03,590 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T01:52:03,602 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T01:52:03,602 exec(compile('"'"''"'"''"'"' 2025-09-09T01:52:03,602 # This is -- a caller that pip uses to run setup.py 2025-09-09T01:52:03,602 # 2025-09-09T01:52:03,602 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T01:52:03,602 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T01:52:03,602 # - It provides a clear error message when setuptools is not installed. 2025-09-09T01:52:03,602 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T01:52:03,602 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T01:52:03,602 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T01:52:03,602 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T01:52:03,602 import os, sys, tokenize, traceback 2025-09-09T01:52:03,602 2025-09-09T01:52:03,602 try: 2025-09-09T01:52:03,602 import setuptools 2025-09-09T01:52:03,602 except ImportError: 2025-09-09T01:52:03,602 print( 2025-09-09T01:52:03,602 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T01:52:03,602 "the build environment with exception:", 2025-09-09T01:52:03,602 file=sys.stderr, 2025-09-09T01:52:03,602 ) 2025-09-09T01:52:03,602 traceback.print_exc() 2025-09-09T01:52:03,602 sys.exit(1) 2025-09-09T01:52:03,602 2025-09-09T01:52:03,602 __file__ = %r 2025-09-09T01:52:03,602 sys.argv[0] = __file__ 2025-09-09T01:52:03,602 2025-09-09T01:52:03,602 if os.path.exists(__file__): 2025-09-09T01:52:03,602 filename = __file__ 2025-09-09T01:52:03,602 with tokenize.open(__file__) as f: 2025-09-09T01:52:03,602 setup_py_code = f.read() 2025-09-09T01:52:03,602 else: 2025-09-09T01:52:03,602 filename = "" 2025-09-09T01:52:03,602 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T01:52:03,602 2025-09-09T01:52:03,602 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T01:52:03,602 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-dg5c78jj/openbabel_811c0cfbe4604652a91f433f81471638/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-gq4kuzvt[/] 2025-09-09T01:52:03,603 [bold magenta]cwd[/]: /tmp/pip-wheel-dg5c78jj/openbabel_811c0cfbe4604652a91f433f81471638/ 2025-09-09T01:52:03,603 Building wheel for openbabel (setup.py): finished with status 'error' 2025-09-09T01:52:03,604 ERROR: Failed building wheel for openbabel 2025-09-09T01:52:03,605 Running setup.py clean for openbabel 2025-09-09T01:52:03,606 Running command python setup.py clean 2025-09-09T01:52:04,680 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:52:04,681 !! 2025-09-09T01:52:04,681 ******************************************************************************** 2025-09-09T01:52:04,681 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:52:04,681 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-09T01:52:04,681 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:52:04,681 ******************************************************************************** 2025-09-09T01:52:04,682 !! 2025-09-09T01:52:04,682 self._finalize_license_expression() 2025-09-09T01:52:04,756 running clean 2025-09-09T01:52:04,829 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-09T01:52:04,829 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T01:52:04,829 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T01:52:04,940 Failed to build openbabel 2025-09-09T01:52:04,941 ERROR: Failed to build one or more wheels 2025-09-09T01:52:04,942 Exception information: 2025-09-09T01:52:04,942 Traceback (most recent call last): 2025-09-09T01:52:04,942 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T01:52:04,942 status = _inner_run() 2025-09-09T01:52:04,942 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T01:52:04,942 return self.run(options, args) 2025-09-09T01:52:04,942 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T01:52:04,942 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T01:52:04,942 return func(self, options, args) 2025-09-09T01:52:04,942 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T01:52:04,942 raise CommandError("Failed to build one or more wheels") 2025-09-09T01:52:04,942 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T01:52:04,946 Removed build tracker: '/tmp/pip-build-tracker-liqpb9gm'