2025-09-09T01:55:39,344 Created temporary directory: /tmp/pip-build-tracker-ig7oq3wg 2025-09-09T01:55:39,344 Initialized build tracking at /tmp/pip-build-tracker-ig7oq3wg 2025-09-09T01:55:39,345 Created build tracker: /tmp/pip-build-tracker-ig7oq3wg 2025-09-09T01:55:39,345 Entered build tracker: /tmp/pip-build-tracker-ig7oq3wg 2025-09-09T01:55:39,345 Created temporary directory: /tmp/pip-wheel-o_s5nbvp 2025-09-09T01:55:39,348 Created temporary directory: /tmp/pip-ephem-wheel-cache-4it3kzr8 2025-09-09T01:55:39,403 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T01:55:39,405 2 location(s) to search for versions of lightdock: 2025-09-09T01:55:39,405 * https://pypi.org/simple/lightdock/ 2025-09-09T01:55:39,405 * https://www.piwheels.org/simple/lightdock/ 2025-09-09T01:55:39,406 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-09T01:55:39,406 Getting page https://pypi.org/simple/lightdock/ 2025-09-09T01:55:39,407 Found index url https://pypi.org/simple/ 2025-09-09T01:55:39,479 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-09T01:55:39,484 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,484 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-09T01:55:39,484 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,485 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-09T01:55:39,485 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,485 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-09T01:55:39,485 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,621 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,621 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T01:55:39,622 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-09T01:55:39,623 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-09T01:55:39,646 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-09T01:55:39,647 Collecting lightdock==0.8.0b3 2025-09-09T01:55:39,648 Created temporary directory: /tmp/pip-unpack-4e7w0wrd 2025-09-09T01:55:39,944 Downloading lightdock-0.8.0b3.tar.gz (32.9 MB) 2025-09-09T01:55:48,809 Added lightdock==0.8.0b3 from https://files.pythonhosted.org/packages/79/aa/24064d08faabc3e4f7acb6706795c52997d4ff8dfa4b6e47b027f4f07a8e/lightdock-0.8.0b3.tar.gz to build tracker '/tmp/pip-build-tracker-ig7oq3wg' 2025-09-09T01:55:48,810 Running setup.py (path:/tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/setup.py) egg_info for package lightdock 2025-09-09T01:55:48,811 Created temporary directory: /tmp/pip-pip-egg-info-kqh6xxlx 2025-09-09T01:55:48,811 Preparing metadata (setup.py): started 2025-09-09T01:55:48,812 Running command python setup.py egg_info 2025-09-09T01:55:49,325 /tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T01:55:49,325 !! 2025-09-09T01:55:49,325 ******************************************************************************** 2025-09-09T01:55:49,325 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T01:55:49,325 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T01:55:49,326 calls to avoid build errors in the future. 2025-09-09T01:55:49,326 ******************************************************************************** 2025-09-09T01:55:49,326 !! 2025-09-09T01:55:49,326 from setuptools.command.test import test as TestCommand 2025-09-09T01:55:49,745 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T01:55:49,745 !! 2025-09-09T01:55:49,745 ******************************************************************************** 2025-09-09T01:55:49,746 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T01:55:49,746 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T01:55:49,746 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T01:55:49,746 or your builds will no longer be supported. 2025-09-09T01:55:49,746 ******************************************************************************** 2025-09-09T01:55:49,746 !! 2025-09-09T01:55:49,746 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T01:55:52,835 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:55:52,836 !! 2025-09-09T01:55:52,836 ******************************************************************************** 2025-09-09T01:55:52,836 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:55:52,836 License :: Free For Educational Use 2025-09-09T01:55:52,836 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:55:52,836 ******************************************************************************** 2025-09-09T01:55:52,837 !! 2025-09-09T01:55:52,837 self._finalize_license_expression() 2025-09-09T01:55:52,909 running egg_info 2025-09-09T01:55:52,982 creating /tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info 2025-09-09T01:55:52,982 writing /tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/PKG-INFO 2025-09-09T01:55:52,984 writing dependency_links to /tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/dependency_links.txt 2025-09-09T01:55:52,985 writing requirements to /tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/requires.txt 2025-09-09T01:55:52,985 writing top-level names to /tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/top_level.txt 2025-09-09T01:55:52,985 writing manifest file '/tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/SOURCES.txt' 2025-09-09T01:55:53,389 reading manifest file '/tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/SOURCES.txt' 2025-09-09T01:55:53,390 reading manifest template 'MANIFEST.in' 2025-09-09T01:55:53,466 adding license file 'LICENSE' 2025-09-09T01:55:53,504 writing manifest file '/tmp/pip-pip-egg-info-kqh6xxlx/lightdock.egg-info/SOURCES.txt' 2025-09-09T01:55:53,644 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T01:55:53,649 Source in /tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4 has version 0.8.0b3, which satisfies requirement lightdock==0.8.0b3 from https://files.pythonhosted.org/packages/79/aa/24064d08faabc3e4f7acb6706795c52997d4ff8dfa4b6e47b027f4f07a8e/lightdock-0.8.0b3.tar.gz 2025-09-09T01:55:53,649 Removed lightdock==0.8.0b3 from https://files.pythonhosted.org/packages/79/aa/24064d08faabc3e4f7acb6706795c52997d4ff8dfa4b6e47b027f4f07a8e/lightdock-0.8.0b3.tar.gz from build tracker '/tmp/pip-build-tracker-ig7oq3wg' 2025-09-09T01:55:53,656 Created temporary directory: /tmp/pip-unpack-bo7h53_o 2025-09-09T01:55:53,656 Created temporary directory: /tmp/pip-unpack-1wp1i176 2025-09-09T01:55:53,656 Building wheels for collected packages: lightdock 2025-09-09T01:55:53,657 Created temporary directory: /tmp/pip-wheel-5kt3nprn 2025-09-09T01:55:53,658 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T01:55:53,659 Building wheel for lightdock (setup.py): started 2025-09-09T01:55:53,660 Destination directory: /tmp/pip-wheel-5kt3nprn 2025-09-09T01:55:53,660 Running command python setup.py bdist_wheel 2025-09-09T01:55:54,177 /tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T01:55:54,177 !! 2025-09-09T01:55:54,177 ******************************************************************************** 2025-09-09T01:55:54,177 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T01:55:54,177 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T01:55:54,178 calls to avoid build errors in the future. 2025-09-09T01:55:54,178 ******************************************************************************** 2025-09-09T01:55:54,178 !! 2025-09-09T01:55:54,178 from setuptools.command.test import test as TestCommand 2025-09-09T01:55:54,510 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T01:55:54,510 !! 2025-09-09T01:55:54,510 ******************************************************************************** 2025-09-09T01:55:54,511 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T01:55:54,511 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T01:55:54,511 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T01:55:54,511 or your builds will no longer be supported. 2025-09-09T01:55:54,511 ******************************************************************************** 2025-09-09T01:55:54,511 !! 2025-09-09T01:55:54,511 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T01:55:55,590 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:55:55,590 !! 2025-09-09T01:55:55,590 ******************************************************************************** 2025-09-09T01:55:55,590 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:55:55,590 License :: Free For Educational Use 2025-09-09T01:55:55,590 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:55:55,590 ******************************************************************************** 2025-09-09T01:55:55,591 !! 2025-09-09T01:55:55,591 self._finalize_license_expression() 2025-09-09T01:55:55,591 running bdist_wheel 2025-09-09T01:55:55,959 running build 2025-09-09T01:55:55,960 running build_py 2025-09-09T01:55:56,035 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T01:55:56,036 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T01:55:56,036 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T01:55:56,037 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T01:55:56,038 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,038 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,038 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,039 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,039 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,040 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,041 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T01:55:56,041 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T01:55:56,041 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T01:55:56,042 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,043 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,043 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,044 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,044 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,045 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,045 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,046 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,046 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T01:55:56,047 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T01:55:56,047 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T01:55:56,048 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T01:55:56,048 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T01:55:56,049 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T01:55:56,049 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T01:55:56,050 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T01:55:56,050 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T01:55:56,051 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T01:55:56,051 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T01:55:56,052 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T01:55:56,052 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T01:55:56,053 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T01:55:56,054 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,054 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,054 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,055 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,056 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,056 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,057 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T01:55:56,057 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T01:55:56,058 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T01:55:56,058 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T01:55:56,059 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T01:55:56,059 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T01:55:56,060 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T01:55:56,060 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T01:55:56,061 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T01:55:56,061 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T01:55:56,062 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T01:55:56,062 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T01:55:56,063 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T01:55:56,063 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,064 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,064 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,065 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,065 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,066 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,066 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,067 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,067 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T01:55:56,068 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T01:55:56,068 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T01:55:56,069 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T01:55:56,070 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T01:55:56,070 copying lightdock/test/util/test_parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T01:55:56,070 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T01:55:56,071 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T01:55:56,072 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,072 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,072 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,073 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,073 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,074 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,074 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,075 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T01:55:56,076 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,076 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,077 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,077 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,078 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,078 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,079 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,079 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,080 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,080 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,081 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T01:55:56,081 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T01:55:56,082 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T01:55:56,082 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T01:55:56,083 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,083 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,084 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,084 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,085 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,085 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,086 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T01:55:56,087 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T01:55:56,087 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T01:55:56,087 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T01:55:56,088 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,088 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,089 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,089 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,090 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,090 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,091 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,091 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T01:55:56,092 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,093 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,093 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,094 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,094 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,095 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,095 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,096 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,096 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,097 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,097 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T01:55:56,098 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T01:55:56,098 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T01:55:56,099 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T01:55:56,100 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,100 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,101 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,101 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,102 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,102 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,103 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,103 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,104 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,104 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,105 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,105 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,106 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,106 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T01:55:56,107 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,107 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,108 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,108 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,109 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,109 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,110 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,110 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,111 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,112 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T01:55:56,112 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,113 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,113 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,114 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,114 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,115 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,115 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,116 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,116 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,117 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,117 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,118 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T01:55:56,119 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T01:55:56,119 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T01:55:56,119 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T01:55:56,120 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T01:55:56,120 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T01:55:56,121 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T01:55:56,122 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T01:55:56,122 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T01:55:56,122 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T01:55:56,123 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T01:55:56,123 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T01:55:56,124 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T01:55:56,125 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T01:55:56,125 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T01:55:56,125 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T01:55:56,126 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T01:55:56,126 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T01:55:56,127 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T01:55:56,128 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T01:55:56,128 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T01:55:56,128 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T01:55:56,129 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T01:55:56,129 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T01:55:56,130 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T01:55:56,131 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T01:55:56,131 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T01:55:56,131 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T01:55:56,132 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T01:55:56,132 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T01:55:56,133 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T01:55:56,133 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T01:55:56,134 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T01:55:56,134 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T01:55:56,135 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T01:55:56,135 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T01:55:56,136 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T01:55:56,137 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T01:55:56,137 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T01:55:56,138 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T01:55:56,138 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T01:55:56,138 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T01:55:56,139 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T01:55:56,140 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T01:55:56,140 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T01:55:56,141 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T01:55:56,142 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T01:55:56,142 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T01:55:56,142 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T01:55:56,143 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T01:55:56,143 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T01:55:56,144 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T01:55:56,145 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T01:55:56,145 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T01:55:56,146 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T01:55:56,146 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T01:55:56,146 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T01:55:56,148 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T01:55:56,148 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T01:55:56,149 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T01:55:56,149 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T01:55:56,150 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T01:55:56,150 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T01:55:56,151 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T01:55:56,151 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T01:55:56,151 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T01:55:56,152 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T01:55:56,153 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T01:55:56,153 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T01:55:56,153 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T01:55:56,154 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T01:55:56,154 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T01:55:56,155 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T01:55:56,156 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T01:55:56,157 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T01:55:56,157 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T01:55:56,158 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T01:55:56,158 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T01:55:56,159 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T01:55:56,159 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T01:55:56,160 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T01:55:56,160 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T01:55:56,161 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T01:55:56,161 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T01:55:56,162 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T01:55:56,162 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T01:55:56,163 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T01:55:56,163 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T01:55:56,163 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T01:55:56,164 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T01:55:56,164 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T01:55:56,165 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T01:55:56,166 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T01:55:56,167 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T01:55:56,167 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T01:55:56,168 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T01:55:56,168 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T01:55:56,169 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:56,169 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:56,170 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:56,170 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T01:55:56,171 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T01:55:56,171 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T01:55:56,172 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T01:55:56,172 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T01:55:56,173 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:56,173 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:56,174 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:56,174 running egg_info 2025-09-09T01:55:56,248 writing lightdock.egg-info/PKG-INFO 2025-09-09T01:55:56,249 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-09T01:55:56,250 writing requirements to lightdock.egg-info/requires.txt 2025-09-09T01:55:56,250 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-09T01:55:56,353 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T01:55:56,421 reading manifest template 'MANIFEST.in' 2025-09-09T01:55:56,496 adding license file 'LICENSE' 2025-09-09T01:55:56,553 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T01:55:56,555 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-09T01:55:56,555 !! 2025-09-09T01:55:56,555 ******************************************************************************** 2025-09-09T01:55:56,555 ############################ 2025-09-09T01:55:56,555 # Package would be ignored # 2025-09-09T01:55:56,556 ############################ 2025-09-09T01:55:56,556 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-09T01:55:56,556 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,556 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,556 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-09T01:55:56,556 to the `packages` configuration field. 2025-09-09T01:55:56,556 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,557 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,557 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,557 If you don't want 'lightdock.etc' to be distributed and are 2025-09-09T01:55:56,557 already explicitly excluding 'lightdock.etc' via 2025-09-09T01:55:56,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,557 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,558 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,558 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,558 even if it does not contain any `.py` files. 2025-09-09T01:55:56,558 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,558 directory, all directories are treated like packages. 2025-09-09T01:55:56,558 ******************************************************************************** 2025-09-09T01:55:56,559 !! 2025-09-09T01:55:56,559 check.warn(importable) 2025-09-09T01:55:56,559 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,559 !! 2025-09-09T01:55:56,559 ******************************************************************************** 2025-09-09T01:55:56,559 ############################ 2025-09-09T01:55:56,559 # Package would be ignored # 2025-09-09T01:55:56,559 ############################ 2025-09-09T01:55:56,559 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-09T01:55:56,559 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,560 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,560 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-09T01:55:56,560 to the `packages` configuration field. 2025-09-09T01:55:56,560 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,560 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,560 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,561 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-09T01:55:56,561 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-09T01:55:56,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,561 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,561 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,561 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,562 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,562 even if it does not contain any `.py` files. 2025-09-09T01:55:56,562 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,562 directory, all directories are treated like packages. 2025-09-09T01:55:56,562 ******************************************************************************** 2025-09-09T01:55:56,562 !! 2025-09-09T01:55:56,562 check.warn(importable) 2025-09-09T01:55:56,562 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,562 !! 2025-09-09T01:55:56,563 ******************************************************************************** 2025-09-09T01:55:56,563 ############################ 2025-09-09T01:55:56,563 # Package would be ignored # 2025-09-09T01:55:56,563 ############################ 2025-09-09T01:55:56,563 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-09T01:55:56,563 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,563 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,563 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-09T01:55:56,563 to the `packages` configuration field. 2025-09-09T01:55:56,563 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,564 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,564 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,564 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,564 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-09T01:55:56,564 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-09T01:55:56,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,565 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,565 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,565 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,565 even if it does not contain any `.py` files. 2025-09-09T01:55:56,565 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,565 directory, all directories are treated like packages. 2025-09-09T01:55:56,565 ******************************************************************************** 2025-09-09T01:55:56,566 !! 2025-09-09T01:55:56,566 check.warn(importable) 2025-09-09T01:55:56,566 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,566 !! 2025-09-09T01:55:56,566 ******************************************************************************** 2025-09-09T01:55:56,566 ############################ 2025-09-09T01:55:56,566 # Package would be ignored # 2025-09-09T01:55:56,566 ############################ 2025-09-09T01:55:56,566 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-09T01:55:56,567 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,567 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,567 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-09T01:55:56,567 to the `packages` configuration field. 2025-09-09T01:55:56,567 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,567 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,567 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,568 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-09T01:55:56,568 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-09T01:55:56,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,568 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,568 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,569 even if it does not contain any `.py` files. 2025-09-09T01:55:56,569 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,569 directory, all directories are treated like packages. 2025-09-09T01:55:56,569 ******************************************************************************** 2025-09-09T01:55:56,569 !! 2025-09-09T01:55:56,569 check.warn(importable) 2025-09-09T01:55:56,569 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,569 !! 2025-09-09T01:55:56,569 ******************************************************************************** 2025-09-09T01:55:56,570 ############################ 2025-09-09T01:55:56,570 # Package would be ignored # 2025-09-09T01:55:56,570 ############################ 2025-09-09T01:55:56,570 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-09T01:55:56,570 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,570 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,570 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-09T01:55:56,570 to the `packages` configuration field. 2025-09-09T01:55:56,570 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,571 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,571 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,571 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-09T01:55:56,571 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-09T01:55:56,571 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,571 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,571 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,572 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,572 even if it does not contain any `.py` files. 2025-09-09T01:55:56,572 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,572 directory, all directories are treated like packages. 2025-09-09T01:55:56,572 ******************************************************************************** 2025-09-09T01:55:56,572 !! 2025-09-09T01:55:56,573 check.warn(importable) 2025-09-09T01:55:56,573 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,573 !! 2025-09-09T01:55:56,573 ******************************************************************************** 2025-09-09T01:55:56,573 ############################ 2025-09-09T01:55:56,573 # Package would be ignored # 2025-09-09T01:55:56,573 ############################ 2025-09-09T01:55:56,573 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-09T01:55:56,573 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,574 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,574 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-09T01:55:56,574 to the `packages` configuration field. 2025-09-09T01:55:56,574 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,574 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,574 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,574 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,575 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-09T01:55:56,575 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-09T01:55:56,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,575 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,575 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,575 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,576 even if it does not contain any `.py` files. 2025-09-09T01:55:56,576 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,576 directory, all directories are treated like packages. 2025-09-09T01:55:56,576 ******************************************************************************** 2025-09-09T01:55:56,576 !! 2025-09-09T01:55:56,576 check.warn(importable) 2025-09-09T01:55:56,576 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-09T01:55:56,576 !! 2025-09-09T01:55:56,576 ******************************************************************************** 2025-09-09T01:55:56,576 ############################ 2025-09-09T01:55:56,577 # Package would be ignored # 2025-09-09T01:55:56,577 ############################ 2025-09-09T01:55:56,577 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-09T01:55:56,577 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,577 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,577 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-09T01:55:56,577 to the `packages` configuration field. 2025-09-09T01:55:56,577 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,578 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,578 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,578 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,578 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-09T01:55:56,578 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-09T01:55:56,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,578 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,579 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,579 even if it does not contain any `.py` files. 2025-09-09T01:55:56,579 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,579 directory, all directories are treated like packages. 2025-09-09T01:55:56,579 ******************************************************************************** 2025-09-09T01:55:56,580 !! 2025-09-09T01:55:56,580 check.warn(importable) 2025-09-09T01:55:56,580 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,580 !! 2025-09-09T01:55:56,580 ******************************************************************************** 2025-09-09T01:55:56,580 ############################ 2025-09-09T01:55:56,580 # Package would be ignored # 2025-09-09T01:55:56,580 ############################ 2025-09-09T01:55:56,580 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-09T01:55:56,580 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,581 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,581 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-09T01:55:56,581 to the `packages` configuration field. 2025-09-09T01:55:56,581 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,581 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,581 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,581 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,582 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-09T01:55:56,582 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-09T01:55:56,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,582 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,582 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,582 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,583 even if it does not contain any `.py` files. 2025-09-09T01:55:56,583 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,583 directory, all directories are treated like packages. 2025-09-09T01:55:56,583 ******************************************************************************** 2025-09-09T01:55:56,583 !! 2025-09-09T01:55:56,583 check.warn(importable) 2025-09-09T01:55:56,583 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,583 !! 2025-09-09T01:55:56,584 ******************************************************************************** 2025-09-09T01:55:56,584 ############################ 2025-09-09T01:55:56,584 # Package would be ignored # 2025-09-09T01:55:56,584 ############################ 2025-09-09T01:55:56,584 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-09T01:55:56,584 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,584 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,584 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-09T01:55:56,584 to the `packages` configuration field. 2025-09-09T01:55:56,585 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,585 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,585 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,585 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,585 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,585 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-09T01:55:56,585 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-09T01:55:56,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,586 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,586 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,586 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,586 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,586 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,587 even if it does not contain any `.py` files. 2025-09-09T01:55:56,587 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,587 directory, all directories are treated like packages. 2025-09-09T01:55:56,587 ******************************************************************************** 2025-09-09T01:55:56,587 !! 2025-09-09T01:55:56,587 check.warn(importable) 2025-09-09T01:55:56,587 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,587 !! 2025-09-09T01:55:56,587 ******************************************************************************** 2025-09-09T01:55:56,588 ############################ 2025-09-09T01:55:56,588 # Package would be ignored # 2025-09-09T01:55:56,588 ############################ 2025-09-09T01:55:56,588 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,588 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,588 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,588 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-09T01:55:56,588 to the `packages` configuration field. 2025-09-09T01:55:56,588 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,589 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,589 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,589 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,589 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,589 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,589 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-09T01:55:56,589 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,589 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,590 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,590 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,590 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,590 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,590 even if it does not contain any `.py` files. 2025-09-09T01:55:56,590 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,590 directory, all directories are treated like packages. 2025-09-09T01:55:56,590 ******************************************************************************** 2025-09-09T01:55:56,591 !! 2025-09-09T01:55:56,591 check.warn(importable) 2025-09-09T01:55:56,591 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T01:55:56,591 !! 2025-09-09T01:55:56,591 ******************************************************************************** 2025-09-09T01:55:56,591 ############################ 2025-09-09T01:55:56,591 # Package would be ignored # 2025-09-09T01:55:56,591 ############################ 2025-09-09T01:55:56,591 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-09T01:55:56,592 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,592 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,592 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-09T01:55:56,592 to the `packages` configuration field. 2025-09-09T01:55:56,592 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,592 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,592 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,593 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,593 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-09T01:55:56,593 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-09T01:55:56,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,593 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,593 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,593 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,594 even if it does not contain any `.py` files. 2025-09-09T01:55:56,594 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,594 directory, all directories are treated like packages. 2025-09-09T01:55:56,594 ******************************************************************************** 2025-09-09T01:55:56,594 !! 2025-09-09T01:55:56,594 check.warn(importable) 2025-09-09T01:55:56,594 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T01:55:56,594 !! 2025-09-09T01:55:56,595 ******************************************************************************** 2025-09-09T01:55:56,595 ############################ 2025-09-09T01:55:56,595 # Package would be ignored # 2025-09-09T01:55:56,595 ############################ 2025-09-09T01:55:56,595 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-09T01:55:56,595 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,595 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,595 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-09T01:55:56,595 to the `packages` configuration field. 2025-09-09T01:55:56,596 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,596 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,596 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,596 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,596 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-09T01:55:56,596 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-09T01:55:56,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,597 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,597 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,597 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,597 even if it does not contain any `.py` files. 2025-09-09T01:55:56,598 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,598 directory, all directories are treated like packages. 2025-09-09T01:55:56,598 ******************************************************************************** 2025-09-09T01:55:56,598 !! 2025-09-09T01:55:56,598 check.warn(importable) 2025-09-09T01:55:56,598 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T01:55:56,598 !! 2025-09-09T01:55:56,598 ******************************************************************************** 2025-09-09T01:55:56,598 ############################ 2025-09-09T01:55:56,599 # Package would be ignored # 2025-09-09T01:55:56,599 ############################ 2025-09-09T01:55:56,599 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-09T01:55:56,599 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,599 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,599 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-09T01:55:56,599 to the `packages` configuration field. 2025-09-09T01:55:56,599 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,599 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,600 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,600 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,600 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,600 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-09T01:55:56,600 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-09T01:55:56,600 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,600 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,600 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,601 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,601 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,601 even if it does not contain any `.py` files. 2025-09-09T01:55:56,601 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,601 directory, all directories are treated like packages. 2025-09-09T01:55:56,601 ******************************************************************************** 2025-09-09T01:55:56,602 !! 2025-09-09T01:55:56,602 check.warn(importable) 2025-09-09T01:55:56,602 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T01:55:56,602 !! 2025-09-09T01:55:56,602 ******************************************************************************** 2025-09-09T01:55:56,602 ############################ 2025-09-09T01:55:56,602 # Package would be ignored # 2025-09-09T01:55:56,602 ############################ 2025-09-09T01:55:56,602 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-09T01:55:56,602 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,602 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,603 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-09T01:55:56,603 to the `packages` configuration field. 2025-09-09T01:55:56,603 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,603 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,603 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,603 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,603 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-09T01:55:56,604 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-09T01:55:56,604 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,604 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,604 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,604 even if it does not contain any `.py` files. 2025-09-09T01:55:56,605 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,605 directory, all directories are treated like packages. 2025-09-09T01:55:56,605 ******************************************************************************** 2025-09-09T01:55:56,605 !! 2025-09-09T01:55:56,605 check.warn(importable) 2025-09-09T01:55:56,605 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,605 !! 2025-09-09T01:55:56,605 ******************************************************************************** 2025-09-09T01:55:56,605 ############################ 2025-09-09T01:55:56,605 # Package would be ignored # 2025-09-09T01:55:56,606 ############################ 2025-09-09T01:55:56,606 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-09T01:55:56,606 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,606 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,606 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-09T01:55:56,606 to the `packages` configuration field. 2025-09-09T01:55:56,606 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,606 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,607 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,607 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-09T01:55:56,607 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-09T01:55:56,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,607 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,607 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,607 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,608 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,608 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,608 even if it does not contain any `.py` files. 2025-09-09T01:55:56,608 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,608 directory, all directories are treated like packages. 2025-09-09T01:55:56,608 ******************************************************************************** 2025-09-09T01:55:56,608 !! 2025-09-09T01:55:56,608 check.warn(importable) 2025-09-09T01:55:56,608 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,609 !! 2025-09-09T01:55:56,609 ******************************************************************************** 2025-09-09T01:55:56,609 ############################ 2025-09-09T01:55:56,609 # Package would be ignored # 2025-09-09T01:55:56,609 ############################ 2025-09-09T01:55:56,609 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,609 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,609 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,609 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-09T01:55:56,609 to the `packages` configuration field. 2025-09-09T01:55:56,610 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,610 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,610 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,610 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,610 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-09T01:55:56,610 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-09T01:55:56,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,611 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,611 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,611 even if it does not contain any `.py` files. 2025-09-09T01:55:56,611 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,611 directory, all directories are treated like packages. 2025-09-09T01:55:56,612 ******************************************************************************** 2025-09-09T01:55:56,612 !! 2025-09-09T01:55:56,612 check.warn(importable) 2025-09-09T01:55:56,612 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,612 !! 2025-09-09T01:55:56,612 ******************************************************************************** 2025-09-09T01:55:56,612 ############################ 2025-09-09T01:55:56,612 # Package would be ignored # 2025-09-09T01:55:56,612 ############################ 2025-09-09T01:55:56,613 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,613 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,613 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,613 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,613 to the `packages` configuration field. 2025-09-09T01:55:56,613 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,613 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,613 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,614 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,614 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-09T01:55:56,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,614 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,614 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,615 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,615 even if it does not contain any `.py` files. 2025-09-09T01:55:56,615 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,615 directory, all directories are treated like packages. 2025-09-09T01:55:56,615 ******************************************************************************** 2025-09-09T01:55:56,615 !! 2025-09-09T01:55:56,615 check.warn(importable) 2025-09-09T01:55:56,615 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,615 !! 2025-09-09T01:55:56,616 ******************************************************************************** 2025-09-09T01:55:56,616 ############################ 2025-09-09T01:55:56,616 # Package would be ignored # 2025-09-09T01:55:56,616 ############################ 2025-09-09T01:55:56,616 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-09T01:55:56,616 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,616 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,616 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-09T01:55:56,616 to the `packages` configuration field. 2025-09-09T01:55:56,617 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,617 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,617 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,617 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,617 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-09T01:55:56,617 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-09T01:55:56,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,617 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,618 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,618 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,618 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,618 even if it does not contain any `.py` files. 2025-09-09T01:55:56,618 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,618 directory, all directories are treated like packages. 2025-09-09T01:55:56,618 ******************************************************************************** 2025-09-09T01:55:56,619 !! 2025-09-09T01:55:56,619 check.warn(importable) 2025-09-09T01:55:56,619 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,619 !! 2025-09-09T01:55:56,619 ******************************************************************************** 2025-09-09T01:55:56,619 ############################ 2025-09-09T01:55:56,619 # Package would be ignored # 2025-09-09T01:55:56,619 ############################ 2025-09-09T01:55:56,619 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-09T01:55:56,619 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,620 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,620 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-09T01:55:56,620 to the `packages` configuration field. 2025-09-09T01:55:56,620 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,620 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,620 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,620 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,621 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-09T01:55:56,621 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-09T01:55:56,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,621 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,621 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,621 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,622 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,622 even if it does not contain any `.py` files. 2025-09-09T01:55:56,622 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,622 directory, all directories are treated like packages. 2025-09-09T01:55:56,622 ******************************************************************************** 2025-09-09T01:55:56,622 !! 2025-09-09T01:55:56,622 check.warn(importable) 2025-09-09T01:55:56,622 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,622 !! 2025-09-09T01:55:56,622 ******************************************************************************** 2025-09-09T01:55:56,622 ############################ 2025-09-09T01:55:56,623 # Package would be ignored # 2025-09-09T01:55:56,623 ############################ 2025-09-09T01:55:56,623 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,623 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,623 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,623 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-09T01:55:56,623 to the `packages` configuration field. 2025-09-09T01:55:56,623 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,623 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,624 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,624 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,624 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,624 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-09T01:55:56,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,624 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,625 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,625 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,625 even if it does not contain any `.py` files. 2025-09-09T01:55:56,625 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,625 directory, all directories are treated like packages. 2025-09-09T01:55:56,625 ******************************************************************************** 2025-09-09T01:55:56,626 !! 2025-09-09T01:55:56,626 check.warn(importable) 2025-09-09T01:55:56,626 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,626 !! 2025-09-09T01:55:56,626 ******************************************************************************** 2025-09-09T01:55:56,626 ############################ 2025-09-09T01:55:56,626 # Package would be ignored # 2025-09-09T01:55:56,626 ############################ 2025-09-09T01:55:56,626 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-09T01:55:56,626 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,627 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,627 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-09T01:55:56,627 to the `packages` configuration field. 2025-09-09T01:55:56,627 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,627 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,627 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,628 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-09T01:55:56,628 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-09T01:55:56,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,628 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,628 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,628 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,628 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,628 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,629 even if it does not contain any `.py` files. 2025-09-09T01:55:56,629 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,629 directory, all directories are treated like packages. 2025-09-09T01:55:56,629 ******************************************************************************** 2025-09-09T01:55:56,629 !! 2025-09-09T01:55:56,629 check.warn(importable) 2025-09-09T01:55:56,629 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,629 !! 2025-09-09T01:55:56,629 ******************************************************************************** 2025-09-09T01:55:56,629 ############################ 2025-09-09T01:55:56,630 # Package would be ignored # 2025-09-09T01:55:56,630 ############################ 2025-09-09T01:55:56,630 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-09T01:55:56,630 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,630 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,630 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-09T01:55:56,630 to the `packages` configuration field. 2025-09-09T01:55:56,630 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,630 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,631 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,631 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,631 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-09T01:55:56,631 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-09T01:55:56,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,631 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,631 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,632 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,632 even if it does not contain any `.py` files. 2025-09-09T01:55:56,632 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,632 directory, all directories are treated like packages. 2025-09-09T01:55:56,632 ******************************************************************************** 2025-09-09T01:55:56,632 !! 2025-09-09T01:55:56,632 check.warn(importable) 2025-09-09T01:55:56,632 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,633 !! 2025-09-09T01:55:56,633 ******************************************************************************** 2025-09-09T01:55:56,633 ############################ 2025-09-09T01:55:56,633 # Package would be ignored # 2025-09-09T01:55:56,633 ############################ 2025-09-09T01:55:56,633 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,633 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,633 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,633 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-09T01:55:56,633 to the `packages` configuration field. 2025-09-09T01:55:56,634 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,634 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,634 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,634 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,634 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,634 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,634 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-09T01:55:56,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,635 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,635 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,635 even if it does not contain any `.py` files. 2025-09-09T01:55:56,635 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,635 directory, all directories are treated like packages. 2025-09-09T01:55:56,636 ******************************************************************************** 2025-09-09T01:55:56,636 !! 2025-09-09T01:55:56,636 check.warn(importable) 2025-09-09T01:55:56,636 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T01:55:56,636 !! 2025-09-09T01:55:56,636 ******************************************************************************** 2025-09-09T01:55:56,636 ############################ 2025-09-09T01:55:56,636 # Package would be ignored # 2025-09-09T01:55:56,636 ############################ 2025-09-09T01:55:56,637 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-09T01:55:56,637 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,637 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,637 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-09T01:55:56,637 to the `packages` configuration field. 2025-09-09T01:55:56,637 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,637 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,637 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,637 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,638 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-09T01:55:56,638 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-09T01:55:56,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,638 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,638 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,639 even if it does not contain any `.py` files. 2025-09-09T01:55:56,639 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,639 directory, all directories are treated like packages. 2025-09-09T01:55:56,639 ******************************************************************************** 2025-09-09T01:55:56,639 !! 2025-09-09T01:55:56,639 check.warn(importable) 2025-09-09T01:55:56,639 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T01:55:56,639 !! 2025-09-09T01:55:56,640 ******************************************************************************** 2025-09-09T01:55:56,640 ############################ 2025-09-09T01:55:56,640 # Package would be ignored # 2025-09-09T01:55:56,640 ############################ 2025-09-09T01:55:56,640 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-09T01:55:56,640 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,640 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,640 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-09T01:55:56,640 to the `packages` configuration field. 2025-09-09T01:55:56,641 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,641 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,641 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,641 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,641 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-09T01:55:56,641 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-09T01:55:56,641 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,641 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,641 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,642 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,642 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,642 even if it does not contain any `.py` files. 2025-09-09T01:55:56,642 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,642 directory, all directories are treated like packages. 2025-09-09T01:55:56,642 ******************************************************************************** 2025-09-09T01:55:56,643 !! 2025-09-09T01:55:56,643 check.warn(importable) 2025-09-09T01:55:56,643 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T01:55:56,643 !! 2025-09-09T01:55:56,643 ******************************************************************************** 2025-09-09T01:55:56,643 ############################ 2025-09-09T01:55:56,643 # Package would be ignored # 2025-09-09T01:55:56,643 ############################ 2025-09-09T01:55:56,643 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-09T01:55:56,643 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,644 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,644 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-09T01:55:56,644 to the `packages` configuration field. 2025-09-09T01:55:56,644 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,644 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,644 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,644 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-09T01:55:56,645 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-09T01:55:56,645 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,645 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,645 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,645 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,645 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,645 even if it does not contain any `.py` files. 2025-09-09T01:55:56,646 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,646 directory, all directories are treated like packages. 2025-09-09T01:55:56,646 ******************************************************************************** 2025-09-09T01:55:56,646 !! 2025-09-09T01:55:56,646 check.warn(importable) 2025-09-09T01:55:56,646 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T01:55:56,646 !! 2025-09-09T01:55:56,646 ******************************************************************************** 2025-09-09T01:55:56,646 ############################ 2025-09-09T01:55:56,646 # Package would be ignored # 2025-09-09T01:55:56,647 ############################ 2025-09-09T01:55:56,647 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-09T01:55:56,647 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,647 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,647 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-09T01:55:56,647 to the `packages` configuration field. 2025-09-09T01:55:56,647 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,647 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,647 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,648 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,648 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-09T01:55:56,648 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-09T01:55:56,648 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,648 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,648 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,648 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,649 even if it does not contain any `.py` files. 2025-09-09T01:55:56,649 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,649 directory, all directories are treated like packages. 2025-09-09T01:55:56,649 ******************************************************************************** 2025-09-09T01:55:56,649 !! 2025-09-09T01:55:56,649 check.warn(importable) 2025-09-09T01:55:56,650 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,650 !! 2025-09-09T01:55:56,650 ******************************************************************************** 2025-09-09T01:55:56,650 ############################ 2025-09-09T01:55:56,650 # Package would be ignored # 2025-09-09T01:55:56,650 ############################ 2025-09-09T01:55:56,650 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-09T01:55:56,650 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,650 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,650 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-09T01:55:56,651 to the `packages` configuration field. 2025-09-09T01:55:56,651 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,651 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,651 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,651 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-09T01:55:56,651 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-09T01:55:56,652 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,652 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,652 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,652 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,652 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,652 even if it does not contain any `.py` files. 2025-09-09T01:55:56,652 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,653 directory, all directories are treated like packages. 2025-09-09T01:55:56,653 ******************************************************************************** 2025-09-09T01:55:56,653 !! 2025-09-09T01:55:56,653 check.warn(importable) 2025-09-09T01:55:56,653 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,653 !! 2025-09-09T01:55:56,653 ******************************************************************************** 2025-09-09T01:55:56,653 ############################ 2025-09-09T01:55:56,653 # Package would be ignored # 2025-09-09T01:55:56,653 ############################ 2025-09-09T01:55:56,653 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-09T01:55:56,654 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,654 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,654 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-09T01:55:56,654 to the `packages` configuration field. 2025-09-09T01:55:56,654 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,654 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,654 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,655 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,655 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-09T01:55:56,655 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-09T01:55:56,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,655 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,655 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,656 even if it does not contain any `.py` files. 2025-09-09T01:55:56,656 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,656 directory, all directories are treated like packages. 2025-09-09T01:55:56,656 ******************************************************************************** 2025-09-09T01:55:56,656 !! 2025-09-09T01:55:56,656 check.warn(importable) 2025-09-09T01:55:56,656 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,656 !! 2025-09-09T01:55:56,657 ******************************************************************************** 2025-09-09T01:55:56,657 ############################ 2025-09-09T01:55:56,657 # Package would be ignored # 2025-09-09T01:55:56,657 ############################ 2025-09-09T01:55:56,657 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,657 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,657 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,657 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-09T01:55:56,657 to the `packages` configuration field. 2025-09-09T01:55:56,657 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,658 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,658 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,658 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,658 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,658 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-09T01:55:56,658 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,658 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,658 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,659 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,659 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,659 even if it does not contain any `.py` files. 2025-09-09T01:55:56,659 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,659 directory, all directories are treated like packages. 2025-09-09T01:55:56,659 ******************************************************************************** 2025-09-09T01:55:56,659 !! 2025-09-09T01:55:56,660 check.warn(importable) 2025-09-09T01:55:56,660 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,660 !! 2025-09-09T01:55:56,660 ******************************************************************************** 2025-09-09T01:55:56,660 ############################ 2025-09-09T01:55:56,660 # Package would be ignored # 2025-09-09T01:55:56,660 ############################ 2025-09-09T01:55:56,660 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-09T01:55:56,660 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,660 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,661 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-09T01:55:56,661 to the `packages` configuration field. 2025-09-09T01:55:56,661 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,661 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,661 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,661 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,662 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-09T01:55:56,662 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-09T01:55:56,662 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,662 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,662 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,662 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,662 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,662 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,663 even if it does not contain any `.py` files. 2025-09-09T01:55:56,663 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,663 directory, all directories are treated like packages. 2025-09-09T01:55:56,663 ******************************************************************************** 2025-09-09T01:55:56,663 !! 2025-09-09T01:55:56,663 check.warn(importable) 2025-09-09T01:55:56,663 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,663 !! 2025-09-09T01:55:56,663 ******************************************************************************** 2025-09-09T01:55:56,664 ############################ 2025-09-09T01:55:56,664 # Package would be ignored # 2025-09-09T01:55:56,664 ############################ 2025-09-09T01:55:56,664 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,664 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,664 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,664 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-09T01:55:56,664 to the `packages` configuration field. 2025-09-09T01:55:56,664 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,665 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,665 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,665 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-09T01:55:56,665 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-09T01:55:56,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,665 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,666 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,666 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,666 even if it does not contain any `.py` files. 2025-09-09T01:55:56,666 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,666 directory, all directories are treated like packages. 2025-09-09T01:55:56,666 ******************************************************************************** 2025-09-09T01:55:56,666 !! 2025-09-09T01:55:56,667 check.warn(importable) 2025-09-09T01:55:56,667 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,667 !! 2025-09-09T01:55:56,667 ******************************************************************************** 2025-09-09T01:55:56,667 ############################ 2025-09-09T01:55:56,667 # Package would be ignored # 2025-09-09T01:55:56,667 ############################ 2025-09-09T01:55:56,667 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,667 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,667 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,668 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,668 to the `packages` configuration field. 2025-09-09T01:55:56,668 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,668 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,668 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,668 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,668 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,669 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-09T01:55:56,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,669 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,669 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,669 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,669 even if it does not contain any `.py` files. 2025-09-09T01:55:56,669 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,670 directory, all directories are treated like packages. 2025-09-09T01:55:56,670 ******************************************************************************** 2025-09-09T01:55:56,670 !! 2025-09-09T01:55:56,670 check.warn(importable) 2025-09-09T01:55:56,670 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,670 !! 2025-09-09T01:55:56,670 ******************************************************************************** 2025-09-09T01:55:56,670 ############################ 2025-09-09T01:55:56,670 # Package would be ignored # 2025-09-09T01:55:56,670 ############################ 2025-09-09T01:55:56,671 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-09T01:55:56,671 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,671 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,671 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-09T01:55:56,671 to the `packages` configuration field. 2025-09-09T01:55:56,671 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,671 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,671 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,672 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-09T01:55:56,672 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-09T01:55:56,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,672 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,672 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,672 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,673 even if it does not contain any `.py` files. 2025-09-09T01:55:56,673 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,673 directory, all directories are treated like packages. 2025-09-09T01:55:56,673 ******************************************************************************** 2025-09-09T01:55:56,673 !! 2025-09-09T01:55:56,673 check.warn(importable) 2025-09-09T01:55:56,673 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,673 !! 2025-09-09T01:55:56,674 ******************************************************************************** 2025-09-09T01:55:56,674 ############################ 2025-09-09T01:55:56,674 # Package would be ignored # 2025-09-09T01:55:56,674 ############################ 2025-09-09T01:55:56,674 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-09T01:55:56,674 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,674 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,674 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-09T01:55:56,674 to the `packages` configuration field. 2025-09-09T01:55:56,675 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,675 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,675 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,675 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-09T01:55:56,675 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-09T01:55:56,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,676 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,676 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,676 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,676 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,676 even if it does not contain any `.py` files. 2025-09-09T01:55:56,676 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,676 directory, all directories are treated like packages. 2025-09-09T01:55:56,677 ******************************************************************************** 2025-09-09T01:55:56,677 !! 2025-09-09T01:55:56,677 check.warn(importable) 2025-09-09T01:55:56,677 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,677 !! 2025-09-09T01:55:56,677 ******************************************************************************** 2025-09-09T01:55:56,677 ############################ 2025-09-09T01:55:56,677 # Package would be ignored # 2025-09-09T01:55:56,677 ############################ 2025-09-09T01:55:56,677 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,678 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,678 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,678 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-09T01:55:56,678 to the `packages` configuration field. 2025-09-09T01:55:56,678 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,678 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,678 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,679 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,679 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,679 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-09T01:55:56,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,679 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,679 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,680 even if it does not contain any `.py` files. 2025-09-09T01:55:56,680 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,680 directory, all directories are treated like packages. 2025-09-09T01:55:56,680 ******************************************************************************** 2025-09-09T01:55:56,680 !! 2025-09-09T01:55:56,680 check.warn(importable) 2025-09-09T01:55:56,680 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,680 !! 2025-09-09T01:55:56,680 ******************************************************************************** 2025-09-09T01:55:56,681 ############################ 2025-09-09T01:55:56,681 # Package would be ignored # 2025-09-09T01:55:56,681 ############################ 2025-09-09T01:55:56,681 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-09T01:55:56,681 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,681 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,681 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-09T01:55:56,681 to the `packages` configuration field. 2025-09-09T01:55:56,681 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,681 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,682 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,682 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,682 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-09T01:55:56,682 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-09T01:55:56,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,682 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,682 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,683 even if it does not contain any `.py` files. 2025-09-09T01:55:56,683 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,683 directory, all directories are treated like packages. 2025-09-09T01:55:56,683 ******************************************************************************** 2025-09-09T01:55:56,683 !! 2025-09-09T01:55:56,683 check.warn(importable) 2025-09-09T01:55:56,684 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,684 !! 2025-09-09T01:55:56,684 ******************************************************************************** 2025-09-09T01:55:56,684 ############################ 2025-09-09T01:55:56,684 # Package would be ignored # 2025-09-09T01:55:56,684 ############################ 2025-09-09T01:55:56,684 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-09T01:55:56,684 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,684 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,684 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-09T01:55:56,685 to the `packages` configuration field. 2025-09-09T01:55:56,685 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,685 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,685 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,685 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-09T01:55:56,685 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-09T01:55:56,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,686 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,686 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,686 even if it does not contain any `.py` files. 2025-09-09T01:55:56,687 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,687 directory, all directories are treated like packages. 2025-09-09T01:55:56,687 ******************************************************************************** 2025-09-09T01:55:56,687 !! 2025-09-09T01:55:56,687 check.warn(importable) 2025-09-09T01:55:56,687 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,687 !! 2025-09-09T01:55:56,687 ******************************************************************************** 2025-09-09T01:55:56,687 ############################ 2025-09-09T01:55:56,687 # Package would be ignored # 2025-09-09T01:55:56,688 ############################ 2025-09-09T01:55:56,688 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,688 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,688 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,688 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-09T01:55:56,688 to the `packages` configuration field. 2025-09-09T01:55:56,688 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,688 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,689 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,689 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,689 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-09T01:55:56,689 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,689 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,689 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,690 even if it does not contain any `.py` files. 2025-09-09T01:55:56,690 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,690 directory, all directories are treated like packages. 2025-09-09T01:55:56,690 ******************************************************************************** 2025-09-09T01:55:56,690 !! 2025-09-09T01:55:56,690 check.warn(importable) 2025-09-09T01:55:56,690 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T01:55:56,691 !! 2025-09-09T01:55:56,691 ******************************************************************************** 2025-09-09T01:55:56,691 ############################ 2025-09-09T01:55:56,691 # Package would be ignored # 2025-09-09T01:55:56,691 ############################ 2025-09-09T01:55:56,691 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-09T01:55:56,691 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,691 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,691 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-09T01:55:56,691 to the `packages` configuration field. 2025-09-09T01:55:56,692 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,692 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,692 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,692 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,692 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-09T01:55:56,692 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-09T01:55:56,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,693 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,693 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,693 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,693 even if it does not contain any `.py` files. 2025-09-09T01:55:56,693 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,693 directory, all directories are treated like packages. 2025-09-09T01:55:56,693 ******************************************************************************** 2025-09-09T01:55:56,694 !! 2025-09-09T01:55:56,694 check.warn(importable) 2025-09-09T01:55:56,694 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T01:55:56,694 !! 2025-09-09T01:55:56,694 ******************************************************************************** 2025-09-09T01:55:56,694 ############################ 2025-09-09T01:55:56,694 # Package would be ignored # 2025-09-09T01:55:56,694 ############################ 2025-09-09T01:55:56,694 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-09T01:55:56,694 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,695 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,695 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-09T01:55:56,695 to the `packages` configuration field. 2025-09-09T01:55:56,695 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,695 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,695 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,696 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-09T01:55:56,696 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-09T01:55:56,696 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,696 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,696 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,696 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,696 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,697 even if it does not contain any `.py` files. 2025-09-09T01:55:56,697 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,697 directory, all directories are treated like packages. 2025-09-09T01:55:56,697 ******************************************************************************** 2025-09-09T01:55:56,697 !! 2025-09-09T01:55:56,697 check.warn(importable) 2025-09-09T01:55:56,697 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T01:55:56,697 !! 2025-09-09T01:55:56,697 ******************************************************************************** 2025-09-09T01:55:56,697 ############################ 2025-09-09T01:55:56,698 # Package would be ignored # 2025-09-09T01:55:56,698 ############################ 2025-09-09T01:55:56,698 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-09T01:55:56,698 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,698 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,698 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-09T01:55:56,698 to the `packages` configuration field. 2025-09-09T01:55:56,698 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,698 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,699 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,699 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,699 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-09T01:55:56,699 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-09T01:55:56,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,699 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,700 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,700 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,700 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,700 even if it does not contain any `.py` files. 2025-09-09T01:55:56,700 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,700 directory, all directories are treated like packages. 2025-09-09T01:55:56,700 ******************************************************************************** 2025-09-09T01:55:56,700 !! 2025-09-09T01:55:56,701 check.warn(importable) 2025-09-09T01:55:56,701 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T01:55:56,701 !! 2025-09-09T01:55:56,701 ******************************************************************************** 2025-09-09T01:55:56,701 ############################ 2025-09-09T01:55:56,701 # Package would be ignored # 2025-09-09T01:55:56,701 ############################ 2025-09-09T01:55:56,701 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-09T01:55:56,701 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,701 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,702 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-09T01:55:56,702 to the `packages` configuration field. 2025-09-09T01:55:56,702 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,702 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,702 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,702 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-09T01:55:56,703 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-09T01:55:56,703 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,703 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,703 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,703 even if it does not contain any `.py` files. 2025-09-09T01:55:56,704 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,704 directory, all directories are treated like packages. 2025-09-09T01:55:56,704 ******************************************************************************** 2025-09-09T01:55:56,704 !! 2025-09-09T01:55:56,704 check.warn(importable) 2025-09-09T01:55:56,704 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,704 !! 2025-09-09T01:55:56,704 ******************************************************************************** 2025-09-09T01:55:56,704 ############################ 2025-09-09T01:55:56,704 # Package would be ignored # 2025-09-09T01:55:56,704 ############################ 2025-09-09T01:55:56,705 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-09T01:55:56,705 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,705 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,705 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-09T01:55:56,705 to the `packages` configuration field. 2025-09-09T01:55:56,705 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,705 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,705 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,706 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-09T01:55:56,706 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-09T01:55:56,706 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,706 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,706 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,707 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,707 even if it does not contain any `.py` files. 2025-09-09T01:55:56,707 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,707 directory, all directories are treated like packages. 2025-09-09T01:55:56,707 ******************************************************************************** 2025-09-09T01:55:56,707 !! 2025-09-09T01:55:56,707 check.warn(importable) 2025-09-09T01:55:56,707 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,707 !! 2025-09-09T01:55:56,708 ******************************************************************************** 2025-09-09T01:55:56,708 ############################ 2025-09-09T01:55:56,708 # Package would be ignored # 2025-09-09T01:55:56,708 ############################ 2025-09-09T01:55:56,708 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,708 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,708 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,708 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-09T01:55:56,708 to the `packages` configuration field. 2025-09-09T01:55:56,709 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,709 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,709 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,709 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,709 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-09T01:55:56,709 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-09T01:55:56,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,709 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,710 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,710 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,710 even if it does not contain any `.py` files. 2025-09-09T01:55:56,710 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,710 directory, all directories are treated like packages. 2025-09-09T01:55:56,710 ******************************************************************************** 2025-09-09T01:55:56,711 !! 2025-09-09T01:55:56,711 check.warn(importable) 2025-09-09T01:55:56,711 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,711 !! 2025-09-09T01:55:56,711 ******************************************************************************** 2025-09-09T01:55:56,711 ############################ 2025-09-09T01:55:56,711 # Package would be ignored # 2025-09-09T01:55:56,711 ############################ 2025-09-09T01:55:56,711 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,711 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,712 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,712 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,712 to the `packages` configuration field. 2025-09-09T01:55:56,712 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,712 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,712 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,713 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,713 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,713 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-09T01:55:56,713 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,713 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,713 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,713 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,714 even if it does not contain any `.py` files. 2025-09-09T01:55:56,714 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,714 directory, all directories are treated like packages. 2025-09-09T01:55:56,714 ******************************************************************************** 2025-09-09T01:55:56,714 !! 2025-09-09T01:55:56,714 check.warn(importable) 2025-09-09T01:55:56,714 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,714 !! 2025-09-09T01:55:56,714 ******************************************************************************** 2025-09-09T01:55:56,715 ############################ 2025-09-09T01:55:56,715 # Package would be ignored # 2025-09-09T01:55:56,715 ############################ 2025-09-09T01:55:56,715 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-09T01:55:56,715 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,715 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,715 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-09T01:55:56,715 to the `packages` configuration field. 2025-09-09T01:55:56,715 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,716 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,716 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,716 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-09T01:55:56,716 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-09T01:55:56,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,716 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,717 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,717 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,717 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,717 even if it does not contain any `.py` files. 2025-09-09T01:55:56,717 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,717 directory, all directories are treated like packages. 2025-09-09T01:55:56,717 ******************************************************************************** 2025-09-09T01:55:56,717 !! 2025-09-09T01:55:56,718 check.warn(importable) 2025-09-09T01:55:56,718 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,718 !! 2025-09-09T01:55:56,718 ******************************************************************************** 2025-09-09T01:55:56,718 ############################ 2025-09-09T01:55:56,718 # Package would be ignored # 2025-09-09T01:55:56,718 ############################ 2025-09-09T01:55:56,718 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-09T01:55:56,718 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,719 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-09T01:55:56,719 to the `packages` configuration field. 2025-09-09T01:55:56,719 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,719 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,719 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,719 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,719 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-09T01:55:56,720 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-09T01:55:56,720 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,720 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,720 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,720 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,720 even if it does not contain any `.py` files. 2025-09-09T01:55:56,721 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,721 directory, all directories are treated like packages. 2025-09-09T01:55:56,721 ******************************************************************************** 2025-09-09T01:55:56,721 !! 2025-09-09T01:55:56,721 check.warn(importable) 2025-09-09T01:55:56,721 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,721 !! 2025-09-09T01:55:56,721 ******************************************************************************** 2025-09-09T01:55:56,721 ############################ 2025-09-09T01:55:56,721 # Package would be ignored # 2025-09-09T01:55:56,721 ############################ 2025-09-09T01:55:56,722 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,722 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,722 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,722 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-09T01:55:56,722 to the `packages` configuration field. 2025-09-09T01:55:56,722 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,722 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,722 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,723 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,723 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-09T01:55:56,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,723 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,723 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,724 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,724 even if it does not contain any `.py` files. 2025-09-09T01:55:56,724 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,724 directory, all directories are treated like packages. 2025-09-09T01:55:56,724 ******************************************************************************** 2025-09-09T01:55:56,724 !! 2025-09-09T01:55:56,724 check.warn(importable) 2025-09-09T01:55:56,724 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,725 !! 2025-09-09T01:55:56,725 ******************************************************************************** 2025-09-09T01:55:56,725 ############################ 2025-09-09T01:55:56,725 # Package would be ignored # 2025-09-09T01:55:56,725 ############################ 2025-09-09T01:55:56,725 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-09T01:55:56,725 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,725 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,725 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-09T01:55:56,726 to the `packages` configuration field. 2025-09-09T01:55:56,726 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,726 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,726 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,726 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-09T01:55:56,726 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-09T01:55:56,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,727 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,727 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,727 even if it does not contain any `.py` files. 2025-09-09T01:55:56,727 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,728 directory, all directories are treated like packages. 2025-09-09T01:55:56,728 ******************************************************************************** 2025-09-09T01:55:56,728 !! 2025-09-09T01:55:56,728 check.warn(importable) 2025-09-09T01:55:56,728 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,728 !! 2025-09-09T01:55:56,728 ******************************************************************************** 2025-09-09T01:55:56,728 ############################ 2025-09-09T01:55:56,728 # Package would be ignored # 2025-09-09T01:55:56,728 ############################ 2025-09-09T01:55:56,729 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-09T01:55:56,729 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,729 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,729 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-09T01:55:56,729 to the `packages` configuration field. 2025-09-09T01:55:56,729 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,729 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,729 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,730 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-09T01:55:56,730 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-09T01:55:56,730 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,730 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,730 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,730 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,731 even if it does not contain any `.py` files. 2025-09-09T01:55:56,731 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,731 directory, all directories are treated like packages. 2025-09-09T01:55:56,731 ******************************************************************************** 2025-09-09T01:55:56,731 !! 2025-09-09T01:55:56,731 check.warn(importable) 2025-09-09T01:55:56,731 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,731 !! 2025-09-09T01:55:56,732 ******************************************************************************** 2025-09-09T01:55:56,732 ############################ 2025-09-09T01:55:56,732 # Package would be ignored # 2025-09-09T01:55:56,732 ############################ 2025-09-09T01:55:56,732 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,732 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,732 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,732 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-09T01:55:56,732 to the `packages` configuration field. 2025-09-09T01:55:56,732 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,733 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,733 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,733 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,733 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-09T01:55:56,733 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,733 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,734 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,734 even if it does not contain any `.py` files. 2025-09-09T01:55:56,734 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,734 directory, all directories are treated like packages. 2025-09-09T01:55:56,734 ******************************************************************************** 2025-09-09T01:55:56,734 !! 2025-09-09T01:55:56,735 check.warn(importable) 2025-09-09T01:55:56,735 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,735 !! 2025-09-09T01:55:56,735 ******************************************************************************** 2025-09-09T01:55:56,735 ############################ 2025-09-09T01:55:56,735 # Package would be ignored # 2025-09-09T01:55:56,735 ############################ 2025-09-09T01:55:56,735 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-09T01:55:56,735 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,736 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,736 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-09T01:55:56,736 to the `packages` configuration field. 2025-09-09T01:55:56,736 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,736 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,736 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,736 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,737 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-09T01:55:56,737 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-09T01:55:56,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,737 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,737 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,737 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,738 even if it does not contain any `.py` files. 2025-09-09T01:55:56,738 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,738 directory, all directories are treated like packages. 2025-09-09T01:55:56,738 ******************************************************************************** 2025-09-09T01:55:56,738 !! 2025-09-09T01:55:56,738 check.warn(importable) 2025-09-09T01:55:56,738 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,738 !! 2025-09-09T01:55:56,738 ******************************************************************************** 2025-09-09T01:55:56,738 ############################ 2025-09-09T01:55:56,739 # Package would be ignored # 2025-09-09T01:55:56,739 ############################ 2025-09-09T01:55:56,739 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-09T01:55:56,739 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,739 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-09T01:55:56,739 to the `packages` configuration field. 2025-09-09T01:55:56,739 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,739 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,739 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,740 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,740 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-09T01:55:56,740 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-09T01:55:56,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,740 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,740 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,741 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,741 even if it does not contain any `.py` files. 2025-09-09T01:55:56,741 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,741 directory, all directories are treated like packages. 2025-09-09T01:55:56,741 ******************************************************************************** 2025-09-09T01:55:56,741 !! 2025-09-09T01:55:56,741 check.warn(importable) 2025-09-09T01:55:56,741 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,742 !! 2025-09-09T01:55:56,742 ******************************************************************************** 2025-09-09T01:55:56,742 ############################ 2025-09-09T01:55:56,742 # Package would be ignored # 2025-09-09T01:55:56,742 ############################ 2025-09-09T01:55:56,742 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,742 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,742 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,742 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-09T01:55:56,742 to the `packages` configuration field. 2025-09-09T01:55:56,743 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,743 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,743 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,743 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,743 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-09T01:55:56,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,744 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,744 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,744 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,744 even if it does not contain any `.py` files. 2025-09-09T01:55:56,744 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,744 directory, all directories are treated like packages. 2025-09-09T01:55:56,745 ******************************************************************************** 2025-09-09T01:55:56,745 !! 2025-09-09T01:55:56,745 check.warn(importable) 2025-09-09T01:55:56,745 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,745 !! 2025-09-09T01:55:56,745 ******************************************************************************** 2025-09-09T01:55:56,745 ############################ 2025-09-09T01:55:56,745 # Package would be ignored # 2025-09-09T01:55:56,745 ############################ 2025-09-09T01:55:56,745 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-09T01:55:56,746 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,746 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,746 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-09T01:55:56,746 to the `packages` configuration field. 2025-09-09T01:55:56,746 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,746 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,746 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,747 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-09T01:55:56,747 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-09T01:55:56,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,747 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,747 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,748 even if it does not contain any `.py` files. 2025-09-09T01:55:56,748 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,748 directory, all directories are treated like packages. 2025-09-09T01:55:56,748 ******************************************************************************** 2025-09-09T01:55:56,748 !! 2025-09-09T01:55:56,748 check.warn(importable) 2025-09-09T01:55:56,748 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,748 !! 2025-09-09T01:55:56,749 ******************************************************************************** 2025-09-09T01:55:56,749 ############################ 2025-09-09T01:55:56,749 # Package would be ignored # 2025-09-09T01:55:56,749 ############################ 2025-09-09T01:55:56,749 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-09T01:55:56,749 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,749 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,749 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-09T01:55:56,749 to the `packages` configuration field. 2025-09-09T01:55:56,750 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,750 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,750 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,750 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-09T01:55:56,750 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-09T01:55:56,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,751 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,751 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,751 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,751 even if it does not contain any `.py` files. 2025-09-09T01:55:56,751 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,751 directory, all directories are treated like packages. 2025-09-09T01:55:56,752 ******************************************************************************** 2025-09-09T01:55:56,752 !! 2025-09-09T01:55:56,752 check.warn(importable) 2025-09-09T01:55:56,752 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,752 !! 2025-09-09T01:55:56,752 ******************************************************************************** 2025-09-09T01:55:56,752 ############################ 2025-09-09T01:55:56,752 # Package would be ignored # 2025-09-09T01:55:56,752 ############################ 2025-09-09T01:55:56,752 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,753 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,753 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,753 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-09T01:55:56,753 to the `packages` configuration field. 2025-09-09T01:55:56,753 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,753 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,753 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,754 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,754 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-09T01:55:56,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,754 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,754 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,755 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,755 even if it does not contain any `.py` files. 2025-09-09T01:55:56,755 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,755 directory, all directories are treated like packages. 2025-09-09T01:55:56,755 ******************************************************************************** 2025-09-09T01:55:56,755 !! 2025-09-09T01:55:56,755 check.warn(importable) 2025-09-09T01:55:56,755 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,755 !! 2025-09-09T01:55:56,755 ******************************************************************************** 2025-09-09T01:55:56,756 ############################ 2025-09-09T01:55:56,756 # Package would be ignored # 2025-09-09T01:55:56,756 ############################ 2025-09-09T01:55:56,756 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-09T01:55:56,756 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,756 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-09T01:55:56,756 to the `packages` configuration field. 2025-09-09T01:55:56,756 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,757 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,757 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,757 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-09T01:55:56,757 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-09T01:55:56,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,757 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,758 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,758 even if it does not contain any `.py` files. 2025-09-09T01:55:56,758 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,758 directory, all directories are treated like packages. 2025-09-09T01:55:56,758 ******************************************************************************** 2025-09-09T01:55:56,758 !! 2025-09-09T01:55:56,759 check.warn(importable) 2025-09-09T01:55:56,759 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,759 !! 2025-09-09T01:55:56,759 ******************************************************************************** 2025-09-09T01:55:56,759 ############################ 2025-09-09T01:55:56,759 # Package would be ignored # 2025-09-09T01:55:56,759 ############################ 2025-09-09T01:55:56,759 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,759 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,759 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,759 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-09T01:55:56,760 to the `packages` configuration field. 2025-09-09T01:55:56,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,760 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,760 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,760 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-09T01:55:56,761 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-09T01:55:56,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,761 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,761 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,761 even if it does not contain any `.py` files. 2025-09-09T01:55:56,762 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,762 directory, all directories are treated like packages. 2025-09-09T01:55:56,762 ******************************************************************************** 2025-09-09T01:55:56,762 !! 2025-09-09T01:55:56,762 check.warn(importable) 2025-09-09T01:55:56,762 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,762 !! 2025-09-09T01:55:56,762 ******************************************************************************** 2025-09-09T01:55:56,762 ############################ 2025-09-09T01:55:56,762 # Package would be ignored # 2025-09-09T01:55:56,763 ############################ 2025-09-09T01:55:56,763 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,763 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,763 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,763 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,763 to the `packages` configuration field. 2025-09-09T01:55:56,763 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,763 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,763 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,764 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,764 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,764 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-09T01:55:56,764 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,764 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,764 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,765 even if it does not contain any `.py` files. 2025-09-09T01:55:56,765 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,765 directory, all directories are treated like packages. 2025-09-09T01:55:56,765 ******************************************************************************** 2025-09-09T01:55:56,765 !! 2025-09-09T01:55:56,765 check.warn(importable) 2025-09-09T01:55:56,766 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,766 !! 2025-09-09T01:55:56,766 ******************************************************************************** 2025-09-09T01:55:56,766 ############################ 2025-09-09T01:55:56,766 # Package would be ignored # 2025-09-09T01:55:56,766 ############################ 2025-09-09T01:55:56,766 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-09T01:55:56,766 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,766 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,767 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-09T01:55:56,767 to the `packages` configuration field. 2025-09-09T01:55:56,767 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,767 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,767 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,767 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-09T01:55:56,768 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-09T01:55:56,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,768 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,768 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,768 even if it does not contain any `.py` files. 2025-09-09T01:55:56,769 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,769 directory, all directories are treated like packages. 2025-09-09T01:55:56,769 ******************************************************************************** 2025-09-09T01:55:56,769 !! 2025-09-09T01:55:56,769 check.warn(importable) 2025-09-09T01:55:56,769 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,769 !! 2025-09-09T01:55:56,769 ******************************************************************************** 2025-09-09T01:55:56,769 ############################ 2025-09-09T01:55:56,769 # Package would be ignored # 2025-09-09T01:55:56,770 ############################ 2025-09-09T01:55:56,770 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-09T01:55:56,770 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,770 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,770 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-09T01:55:56,770 to the `packages` configuration field. 2025-09-09T01:55:56,770 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,770 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,770 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,770 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,771 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-09T01:55:56,771 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-09T01:55:56,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,771 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,771 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,771 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,771 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,772 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,772 even if it does not contain any `.py` files. 2025-09-09T01:55:56,772 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,772 directory, all directories are treated like packages. 2025-09-09T01:55:56,772 ******************************************************************************** 2025-09-09T01:55:56,772 !! 2025-09-09T01:55:56,772 check.warn(importable) 2025-09-09T01:55:56,772 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,772 !! 2025-09-09T01:55:56,773 ******************************************************************************** 2025-09-09T01:55:56,773 ############################ 2025-09-09T01:55:56,773 # Package would be ignored # 2025-09-09T01:55:56,773 ############################ 2025-09-09T01:55:56,773 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,773 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,773 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,773 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-09T01:55:56,773 to the `packages` configuration field. 2025-09-09T01:55:56,774 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,774 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,774 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,774 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,774 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,774 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,774 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-09T01:55:56,774 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,775 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,775 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,775 even if it does not contain any `.py` files. 2025-09-09T01:55:56,775 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,776 directory, all directories are treated like packages. 2025-09-09T01:55:56,776 ******************************************************************************** 2025-09-09T01:55:56,776 !! 2025-09-09T01:55:56,776 check.warn(importable) 2025-09-09T01:55:56,776 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,776 !! 2025-09-09T01:55:56,776 ******************************************************************************** 2025-09-09T01:55:56,776 ############################ 2025-09-09T01:55:56,776 # Package would be ignored # 2025-09-09T01:55:56,776 ############################ 2025-09-09T01:55:56,777 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-09T01:55:56,777 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,777 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,777 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-09T01:55:56,777 to the `packages` configuration field. 2025-09-09T01:55:56,777 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,777 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,777 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,778 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-09T01:55:56,778 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-09T01:55:56,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,778 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,778 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,778 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,779 even if it does not contain any `.py` files. 2025-09-09T01:55:56,779 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,779 directory, all directories are treated like packages. 2025-09-09T01:55:56,779 ******************************************************************************** 2025-09-09T01:55:56,779 !! 2025-09-09T01:55:56,779 check.warn(importable) 2025-09-09T01:55:56,779 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,779 !! 2025-09-09T01:55:56,780 ******************************************************************************** 2025-09-09T01:55:56,780 ############################ 2025-09-09T01:55:56,780 # Package would be ignored # 2025-09-09T01:55:56,780 ############################ 2025-09-09T01:55:56,780 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-09T01:55:56,780 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,780 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,780 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-09T01:55:56,780 to the `packages` configuration field. 2025-09-09T01:55:56,780 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,781 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,781 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,781 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-09T01:55:56,781 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-09T01:55:56,781 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,781 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,781 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,782 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,782 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,782 even if it does not contain any `.py` files. 2025-09-09T01:55:56,782 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,782 directory, all directories are treated like packages. 2025-09-09T01:55:56,782 ******************************************************************************** 2025-09-09T01:55:56,782 !! 2025-09-09T01:55:56,783 check.warn(importable) 2025-09-09T01:55:56,783 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,783 !! 2025-09-09T01:55:56,783 ******************************************************************************** 2025-09-09T01:55:56,783 ############################ 2025-09-09T01:55:56,783 # Package would be ignored # 2025-09-09T01:55:56,783 ############################ 2025-09-09T01:55:56,783 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,783 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,783 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,784 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-09T01:55:56,784 to the `packages` configuration field. 2025-09-09T01:55:56,784 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,784 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,784 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,784 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,784 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,784 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,785 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-09T01:55:56,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,785 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,785 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,785 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,785 even if it does not contain any `.py` files. 2025-09-09T01:55:56,786 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,786 directory, all directories are treated like packages. 2025-09-09T01:55:56,786 ******************************************************************************** 2025-09-09T01:55:56,786 !! 2025-09-09T01:55:56,786 check.warn(importable) 2025-09-09T01:55:56,786 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,786 !! 2025-09-09T01:55:56,786 ******************************************************************************** 2025-09-09T01:55:56,786 ############################ 2025-09-09T01:55:56,787 # Package would be ignored # 2025-09-09T01:55:56,787 ############################ 2025-09-09T01:55:56,787 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-09T01:55:56,787 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,787 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-09T01:55:56,787 to the `packages` configuration field. 2025-09-09T01:55:56,787 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,787 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,788 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,788 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-09T01:55:56,788 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-09T01:55:56,788 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,788 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,788 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,789 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,789 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,789 even if it does not contain any `.py` files. 2025-09-09T01:55:56,789 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,789 directory, all directories are treated like packages. 2025-09-09T01:55:56,789 ******************************************************************************** 2025-09-09T01:55:56,789 !! 2025-09-09T01:55:56,789 check.warn(importable) 2025-09-09T01:55:56,790 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,790 !! 2025-09-09T01:55:56,790 ******************************************************************************** 2025-09-09T01:55:56,790 ############################ 2025-09-09T01:55:56,790 # Package would be ignored # 2025-09-09T01:55:56,790 ############################ 2025-09-09T01:55:56,790 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,790 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,790 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,790 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-09T01:55:56,791 to the `packages` configuration field. 2025-09-09T01:55:56,791 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,791 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,791 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,791 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-09T01:55:56,791 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-09T01:55:56,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,792 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,792 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,792 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,792 even if it does not contain any `.py` files. 2025-09-09T01:55:56,792 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,793 directory, all directories are treated like packages. 2025-09-09T01:55:56,793 ******************************************************************************** 2025-09-09T01:55:56,793 !! 2025-09-09T01:55:56,793 check.warn(importable) 2025-09-09T01:55:56,793 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,793 !! 2025-09-09T01:55:56,793 ******************************************************************************** 2025-09-09T01:55:56,793 ############################ 2025-09-09T01:55:56,793 # Package would be ignored # 2025-09-09T01:55:56,793 ############################ 2025-09-09T01:55:56,793 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,794 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,794 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,794 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,794 to the `packages` configuration field. 2025-09-09T01:55:56,794 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,794 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,794 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,795 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,795 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-09T01:55:56,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,795 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,795 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,795 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,796 even if it does not contain any `.py` files. 2025-09-09T01:55:56,796 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,796 directory, all directories are treated like packages. 2025-09-09T01:55:56,796 ******************************************************************************** 2025-09-09T01:55:56,796 !! 2025-09-09T01:55:56,796 check.warn(importable) 2025-09-09T01:55:56,796 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,796 !! 2025-09-09T01:55:56,797 ******************************************************************************** 2025-09-09T01:55:56,797 ############################ 2025-09-09T01:55:56,797 # Package would be ignored # 2025-09-09T01:55:56,797 ############################ 2025-09-09T01:55:56,797 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-09T01:55:56,797 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,797 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,797 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-09T01:55:56,797 to the `packages` configuration field. 2025-09-09T01:55:56,797 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,797 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,798 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,798 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,798 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-09T01:55:56,798 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-09T01:55:56,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,799 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,799 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,799 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,799 even if it does not contain any `.py` files. 2025-09-09T01:55:56,799 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,799 directory, all directories are treated like packages. 2025-09-09T01:55:56,799 ******************************************************************************** 2025-09-09T01:55:56,800 !! 2025-09-09T01:55:56,800 check.warn(importable) 2025-09-09T01:55:56,800 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,800 !! 2025-09-09T01:55:56,800 ******************************************************************************** 2025-09-09T01:55:56,800 ############################ 2025-09-09T01:55:56,800 # Package would be ignored # 2025-09-09T01:55:56,800 ############################ 2025-09-09T01:55:56,800 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-09T01:55:56,800 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,801 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,801 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-09T01:55:56,801 to the `packages` configuration field. 2025-09-09T01:55:56,801 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,801 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,801 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,802 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-09T01:55:56,802 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-09T01:55:56,802 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,802 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,802 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,802 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,802 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,803 even if it does not contain any `.py` files. 2025-09-09T01:55:56,803 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,803 directory, all directories are treated like packages. 2025-09-09T01:55:56,803 ******************************************************************************** 2025-09-09T01:55:56,803 !! 2025-09-09T01:55:56,803 check.warn(importable) 2025-09-09T01:55:56,803 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,803 !! 2025-09-09T01:55:56,803 ******************************************************************************** 2025-09-09T01:55:56,804 ############################ 2025-09-09T01:55:56,804 # Package would be ignored # 2025-09-09T01:55:56,804 ############################ 2025-09-09T01:55:56,804 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,804 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,804 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,804 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-09T01:55:56,804 to the `packages` configuration field. 2025-09-09T01:55:56,804 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,804 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,805 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,805 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,805 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,805 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-09T01:55:56,805 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,805 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,805 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,806 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,806 even if it does not contain any `.py` files. 2025-09-09T01:55:56,806 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,806 directory, all directories are treated like packages. 2025-09-09T01:55:56,806 ******************************************************************************** 2025-09-09T01:55:56,806 !! 2025-09-09T01:55:56,806 check.warn(importable) 2025-09-09T01:55:56,807 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-09T01:55:56,807 !! 2025-09-09T01:55:56,807 ******************************************************************************** 2025-09-09T01:55:56,807 ############################ 2025-09-09T01:55:56,807 # Package would be ignored # 2025-09-09T01:55:56,807 ############################ 2025-09-09T01:55:56,807 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-09T01:55:56,807 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,807 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,807 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-09T01:55:56,808 to the `packages` configuration field. 2025-09-09T01:55:56,808 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,808 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,808 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,808 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,808 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-09T01:55:56,808 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-09T01:55:56,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,809 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,809 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,809 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,809 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,809 even if it does not contain any `.py` files. 2025-09-09T01:55:56,809 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,809 directory, all directories are treated like packages. 2025-09-09T01:55:56,810 ******************************************************************************** 2025-09-09T01:55:56,810 !! 2025-09-09T01:55:56,810 check.warn(importable) 2025-09-09T01:55:56,810 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,810 !! 2025-09-09T01:55:56,810 ******************************************************************************** 2025-09-09T01:55:56,810 ############################ 2025-09-09T01:55:56,810 # Package would be ignored # 2025-09-09T01:55:56,810 ############################ 2025-09-09T01:55:56,811 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-09T01:55:56,811 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,811 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,811 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-09T01:55:56,811 to the `packages` configuration field. 2025-09-09T01:55:56,811 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,811 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,811 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,811 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,812 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,812 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-09T01:55:56,812 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-09T01:55:56,812 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,812 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,812 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,813 even if it does not contain any `.py` files. 2025-09-09T01:55:56,813 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,813 directory, all directories are treated like packages. 2025-09-09T01:55:56,813 ******************************************************************************** 2025-09-09T01:55:56,813 !! 2025-09-09T01:55:56,813 check.warn(importable) 2025-09-09T01:55:56,813 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-09T01:55:56,814 !! 2025-09-09T01:55:56,814 ******************************************************************************** 2025-09-09T01:55:56,814 ############################ 2025-09-09T01:55:56,814 # Package would be ignored # 2025-09-09T01:55:56,814 ############################ 2025-09-09T01:55:56,814 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-09T01:55:56,814 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,814 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,814 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-09T01:55:56,814 to the `packages` configuration field. 2025-09-09T01:55:56,815 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,815 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,815 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,815 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-09T01:55:56,815 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-09T01:55:56,815 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,816 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,816 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,816 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,816 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,816 even if it does not contain any `.py` files. 2025-09-09T01:55:56,816 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,816 directory, all directories are treated like packages. 2025-09-09T01:55:56,817 ******************************************************************************** 2025-09-09T01:55:56,817 !! 2025-09-09T01:55:56,817 check.warn(importable) 2025-09-09T01:55:56,817 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,817 !! 2025-09-09T01:55:56,817 ******************************************************************************** 2025-09-09T01:55:56,817 ############################ 2025-09-09T01:55:56,817 # Package would be ignored # 2025-09-09T01:55:56,817 ############################ 2025-09-09T01:55:56,817 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-09T01:55:56,818 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,818 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,818 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-09T01:55:56,818 to the `packages` configuration field. 2025-09-09T01:55:56,818 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,818 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,818 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,819 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-09T01:55:56,819 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-09T01:55:56,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,819 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,819 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,819 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,820 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,820 even if it does not contain any `.py` files. 2025-09-09T01:55:56,820 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,820 directory, all directories are treated like packages. 2025-09-09T01:55:56,820 ******************************************************************************** 2025-09-09T01:55:56,820 !! 2025-09-09T01:55:56,820 check.warn(importable) 2025-09-09T01:55:56,820 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,820 !! 2025-09-09T01:55:56,820 ******************************************************************************** 2025-09-09T01:55:56,821 ############################ 2025-09-09T01:55:56,821 # Package would be ignored # 2025-09-09T01:55:56,821 ############################ 2025-09-09T01:55:56,821 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-09T01:55:56,821 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,821 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,821 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-09T01:55:56,821 to the `packages` configuration field. 2025-09-09T01:55:56,821 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,821 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,822 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,822 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,822 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,822 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-09T01:55:56,822 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-09T01:55:56,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,822 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,822 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,823 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,823 even if it does not contain any `.py` files. 2025-09-09T01:55:56,823 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,823 directory, all directories are treated like packages. 2025-09-09T01:55:56,823 ******************************************************************************** 2025-09-09T01:55:56,824 !! 2025-09-09T01:55:56,824 check.warn(importable) 2025-09-09T01:55:56,824 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,824 !! 2025-09-09T01:55:56,824 ******************************************************************************** 2025-09-09T01:55:56,824 ############################ 2025-09-09T01:55:56,824 # Package would be ignored # 2025-09-09T01:55:56,824 ############################ 2025-09-09T01:55:56,824 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,824 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,825 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,825 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-09T01:55:56,825 to the `packages` configuration field. 2025-09-09T01:55:56,825 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,825 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,825 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,825 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,826 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-09T01:55:56,826 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-09T01:55:56,826 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,826 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,826 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,826 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,826 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,827 even if it does not contain any `.py` files. 2025-09-09T01:55:56,827 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,827 directory, all directories are treated like packages. 2025-09-09T01:55:56,827 ******************************************************************************** 2025-09-09T01:55:56,827 !! 2025-09-09T01:55:56,827 check.warn(importable) 2025-09-09T01:55:56,827 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-09T01:55:56,827 !! 2025-09-09T01:55:56,827 ******************************************************************************** 2025-09-09T01:55:56,828 ############################ 2025-09-09T01:55:56,828 # Package would be ignored # 2025-09-09T01:55:56,828 ############################ 2025-09-09T01:55:56,828 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-09T01:55:56,828 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,828 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,828 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-09T01:55:56,828 to the `packages` configuration field. 2025-09-09T01:55:56,828 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,829 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,829 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,829 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,829 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-09T01:55:56,829 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-09T01:55:56,829 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,829 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,829 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,830 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,830 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,830 even if it does not contain any `.py` files. 2025-09-09T01:55:56,830 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,830 directory, all directories are treated like packages. 2025-09-09T01:55:56,830 ******************************************************************************** 2025-09-09T01:55:56,830 !! 2025-09-09T01:55:56,831 check.warn(importable) 2025-09-09T01:55:56,831 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,831 !! 2025-09-09T01:55:56,831 ******************************************************************************** 2025-09-09T01:55:56,831 ############################ 2025-09-09T01:55:56,831 # Package would be ignored # 2025-09-09T01:55:56,831 ############################ 2025-09-09T01:55:56,831 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-09T01:55:56,831 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,831 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,832 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-09T01:55:56,832 to the `packages` configuration field. 2025-09-09T01:55:56,832 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,832 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,832 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,832 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,832 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-09T01:55:56,833 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-09T01:55:56,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,833 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,833 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,833 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,833 even if it does not contain any `.py` files. 2025-09-09T01:55:56,834 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,834 directory, all directories are treated like packages. 2025-09-09T01:55:56,834 ******************************************************************************** 2025-09-09T01:55:56,834 !! 2025-09-09T01:55:56,834 check.warn(importable) 2025-09-09T01:55:56,834 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-09T01:55:56,834 !! 2025-09-09T01:55:56,834 ******************************************************************************** 2025-09-09T01:55:56,834 ############################ 2025-09-09T01:55:56,834 # Package would be ignored # 2025-09-09T01:55:56,835 ############################ 2025-09-09T01:55:56,835 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-09T01:55:56,835 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,835 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,835 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-09T01:55:56,835 to the `packages` configuration field. 2025-09-09T01:55:56,835 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,835 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,836 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,836 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-09T01:55:56,836 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-09T01:55:56,836 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,836 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,836 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,837 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,837 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,837 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,837 even if it does not contain any `.py` files. 2025-09-09T01:55:56,837 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,837 directory, all directories are treated like packages. 2025-09-09T01:55:56,837 ******************************************************************************** 2025-09-09T01:55:56,837 !! 2025-09-09T01:55:56,838 check.warn(importable) 2025-09-09T01:55:56,838 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,838 !! 2025-09-09T01:55:56,838 ******************************************************************************** 2025-09-09T01:55:56,838 ############################ 2025-09-09T01:55:56,838 # Package would be ignored # 2025-09-09T01:55:56,838 ############################ 2025-09-09T01:55:56,838 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-09T01:55:56,838 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,838 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,839 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-09T01:55:56,839 to the `packages` configuration field. 2025-09-09T01:55:56,839 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,839 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,839 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,840 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-09T01:55:56,840 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-09T01:55:56,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,840 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,840 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,840 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,840 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,841 even if it does not contain any `.py` files. 2025-09-09T01:55:56,841 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,841 directory, all directories are treated like packages. 2025-09-09T01:55:56,841 ******************************************************************************** 2025-09-09T01:55:56,841 !! 2025-09-09T01:55:56,841 check.warn(importable) 2025-09-09T01:55:56,841 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,841 !! 2025-09-09T01:55:56,841 ******************************************************************************** 2025-09-09T01:55:56,841 ############################ 2025-09-09T01:55:56,842 # Package would be ignored # 2025-09-09T01:55:56,842 ############################ 2025-09-09T01:55:56,842 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,842 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,842 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,842 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-09T01:55:56,842 to the `packages` configuration field. 2025-09-09T01:55:56,842 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,842 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,843 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,843 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-09T01:55:56,843 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-09T01:55:56,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,843 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,843 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,844 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,844 even if it does not contain any `.py` files. 2025-09-09T01:55:56,844 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,844 directory, all directories are treated like packages. 2025-09-09T01:55:56,844 ******************************************************************************** 2025-09-09T01:55:56,844 !! 2025-09-09T01:55:56,844 check.warn(importable) 2025-09-09T01:55:56,844 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,845 !! 2025-09-09T01:55:56,845 ******************************************************************************** 2025-09-09T01:55:56,845 ############################ 2025-09-09T01:55:56,845 # Package would be ignored # 2025-09-09T01:55:56,845 ############################ 2025-09-09T01:55:56,845 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-09T01:55:56,845 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,845 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,845 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-09T01:55:56,845 to the `packages` configuration field. 2025-09-09T01:55:56,846 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,846 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,846 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,846 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,846 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-09T01:55:56,846 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-09T01:55:56,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,847 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,847 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,847 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,847 even if it does not contain any `.py` files. 2025-09-09T01:55:56,847 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,847 directory, all directories are treated like packages. 2025-09-09T01:55:56,847 ******************************************************************************** 2025-09-09T01:55:56,848 !! 2025-09-09T01:55:56,848 check.warn(importable) 2025-09-09T01:55:56,848 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,848 !! 2025-09-09T01:55:56,848 ******************************************************************************** 2025-09-09T01:55:56,848 ############################ 2025-09-09T01:55:56,848 # Package would be ignored # 2025-09-09T01:55:56,848 ############################ 2025-09-09T01:55:56,848 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-09T01:55:56,849 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,849 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,849 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-09T01:55:56,849 to the `packages` configuration field. 2025-09-09T01:55:56,849 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,849 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,849 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,849 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,850 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,850 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-09T01:55:56,850 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-09T01:55:56,850 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,850 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,850 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,850 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,850 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,851 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,851 even if it does not contain any `.py` files. 2025-09-09T01:55:56,851 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,851 directory, all directories are treated like packages. 2025-09-09T01:55:56,851 ******************************************************************************** 2025-09-09T01:55:56,851 !! 2025-09-09T01:55:56,851 check.warn(importable) 2025-09-09T01:55:56,851 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,851 !! 2025-09-09T01:55:56,852 ******************************************************************************** 2025-09-09T01:55:56,852 ############################ 2025-09-09T01:55:56,852 # Package would be ignored # 2025-09-09T01:55:56,852 ############################ 2025-09-09T01:55:56,852 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,852 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,852 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,852 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,852 to the `packages` configuration field. 2025-09-09T01:55:56,852 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,853 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,853 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,853 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,853 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-09T01:55:56,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,853 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,853 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,854 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,854 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,854 even if it does not contain any `.py` files. 2025-09-09T01:55:56,854 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,854 directory, all directories are treated like packages. 2025-09-09T01:55:56,854 ******************************************************************************** 2025-09-09T01:55:56,855 !! 2025-09-09T01:55:56,855 check.warn(importable) 2025-09-09T01:55:56,855 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-09T01:55:56,855 !! 2025-09-09T01:55:56,855 ******************************************************************************** 2025-09-09T01:55:56,855 ############################ 2025-09-09T01:55:56,855 # Package would be ignored # 2025-09-09T01:55:56,855 ############################ 2025-09-09T01:55:56,855 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-09T01:55:56,855 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,856 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,856 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-09T01:55:56,856 to the `packages` configuration field. 2025-09-09T01:55:56,856 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,856 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,856 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,857 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-09T01:55:56,857 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-09T01:55:56,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,857 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,857 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,857 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,857 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,858 even if it does not contain any `.py` files. 2025-09-09T01:55:56,858 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,858 directory, all directories are treated like packages. 2025-09-09T01:55:56,858 ******************************************************************************** 2025-09-09T01:55:56,858 !! 2025-09-09T01:55:56,858 check.warn(importable) 2025-09-09T01:55:56,858 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,858 !! 2025-09-09T01:55:56,858 ******************************************************************************** 2025-09-09T01:55:56,858 ############################ 2025-09-09T01:55:56,858 # Package would be ignored # 2025-09-09T01:55:56,859 ############################ 2025-09-09T01:55:56,859 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-09T01:55:56,859 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,859 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,859 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-09T01:55:56,859 to the `packages` configuration field. 2025-09-09T01:55:56,859 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,859 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,860 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,860 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,860 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-09T01:55:56,860 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-09T01:55:56,860 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,860 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,860 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,861 even if it does not contain any `.py` files. 2025-09-09T01:55:56,861 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,861 directory, all directories are treated like packages. 2025-09-09T01:55:56,861 ******************************************************************************** 2025-09-09T01:55:56,861 !! 2025-09-09T01:55:56,861 check.warn(importable) 2025-09-09T01:55:56,862 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,862 !! 2025-09-09T01:55:56,862 ******************************************************************************** 2025-09-09T01:55:56,862 ############################ 2025-09-09T01:55:56,862 # Package would be ignored # 2025-09-09T01:55:56,862 ############################ 2025-09-09T01:55:56,862 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,862 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,862 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,862 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-09T01:55:56,863 to the `packages` configuration field. 2025-09-09T01:55:56,863 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,863 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,863 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,863 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,863 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-09T01:55:56,863 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-09T01:55:56,864 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,864 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,864 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,864 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,864 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,864 even if it does not contain any `.py` files. 2025-09-09T01:55:56,864 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,865 directory, all directories are treated like packages. 2025-09-09T01:55:56,865 ******************************************************************************** 2025-09-09T01:55:56,865 !! 2025-09-09T01:55:56,865 check.warn(importable) 2025-09-09T01:55:56,865 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,865 !! 2025-09-09T01:55:56,865 ******************************************************************************** 2025-09-09T01:55:56,865 ############################ 2025-09-09T01:55:56,865 # Package would be ignored # 2025-09-09T01:55:56,865 ############################ 2025-09-09T01:55:56,866 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-09T01:55:56,866 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,866 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,866 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-09T01:55:56,866 to the `packages` configuration field. 2025-09-09T01:55:56,866 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,866 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,866 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,866 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,867 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-09T01:55:56,867 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-09T01:55:56,867 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,867 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,867 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,867 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,868 even if it does not contain any `.py` files. 2025-09-09T01:55:56,868 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,868 directory, all directories are treated like packages. 2025-09-09T01:55:56,868 ******************************************************************************** 2025-09-09T01:55:56,868 !! 2025-09-09T01:55:56,868 check.warn(importable) 2025-09-09T01:55:56,868 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-09T01:55:56,868 !! 2025-09-09T01:55:56,869 ******************************************************************************** 2025-09-09T01:55:56,869 ############################ 2025-09-09T01:55:56,869 # Package would be ignored # 2025-09-09T01:55:56,869 ############################ 2025-09-09T01:55:56,869 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-09T01:55:56,869 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,869 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,869 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-09T01:55:56,869 to the `packages` configuration field. 2025-09-09T01:55:56,869 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,870 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,870 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,870 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,870 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,870 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-09T01:55:56,870 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-09T01:55:56,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,870 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,871 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,871 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,871 even if it does not contain any `.py` files. 2025-09-09T01:55:56,871 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,871 directory, all directories are treated like packages. 2025-09-09T01:55:56,871 ******************************************************************************** 2025-09-09T01:55:56,872 !! 2025-09-09T01:55:56,872 check.warn(importable) 2025-09-09T01:55:56,872 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-09T01:55:56,872 !! 2025-09-09T01:55:56,872 ******************************************************************************** 2025-09-09T01:55:56,872 ############################ 2025-09-09T01:55:56,872 # Package would be ignored # 2025-09-09T01:55:56,872 ############################ 2025-09-09T01:55:56,872 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-09T01:55:56,872 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,872 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,873 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-09T01:55:56,873 to the `packages` configuration field. 2025-09-09T01:55:56,873 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,873 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,873 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,874 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-09T01:55:56,874 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-09T01:55:56,874 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,874 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,874 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,874 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,874 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,875 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,875 even if it does not contain any `.py` files. 2025-09-09T01:55:56,875 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,875 directory, all directories are treated like packages. 2025-09-09T01:55:56,875 ******************************************************************************** 2025-09-09T01:55:56,875 !! 2025-09-09T01:55:56,875 check.warn(importable) 2025-09-09T01:55:56,875 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-09T01:55:56,875 !! 2025-09-09T01:55:56,875 ******************************************************************************** 2025-09-09T01:55:56,876 ############################ 2025-09-09T01:55:56,876 # Package would be ignored # 2025-09-09T01:55:56,876 ############################ 2025-09-09T01:55:56,876 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-09T01:55:56,876 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,876 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,876 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-09T01:55:56,876 to the `packages` configuration field. 2025-09-09T01:55:56,876 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,877 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,877 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,877 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-09T01:55:56,877 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-09T01:55:56,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,877 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,878 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,878 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,878 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,878 even if it does not contain any `.py` files. 2025-09-09T01:55:56,878 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,878 directory, all directories are treated like packages. 2025-09-09T01:55:56,878 ******************************************************************************** 2025-09-09T01:55:56,879 !! 2025-09-09T01:55:56,879 check.warn(importable) 2025-09-09T01:55:56,879 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,879 !! 2025-09-09T01:55:56,879 ******************************************************************************** 2025-09-09T01:55:56,879 ############################ 2025-09-09T01:55:56,879 # Package would be ignored # 2025-09-09T01:55:56,879 ############################ 2025-09-09T01:55:56,879 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,879 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,879 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,880 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-09T01:55:56,880 to the `packages` configuration field. 2025-09-09T01:55:56,880 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,880 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,880 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,880 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-09T01:55:56,881 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-09T01:55:56,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,881 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,881 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,881 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,881 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,881 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,881 even if it does not contain any `.py` files. 2025-09-09T01:55:56,882 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,882 directory, all directories are treated like packages. 2025-09-09T01:55:56,882 ******************************************************************************** 2025-09-09T01:55:56,882 !! 2025-09-09T01:55:56,882 check.warn(importable) 2025-09-09T01:55:56,882 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-09T01:55:56,882 !! 2025-09-09T01:55:56,882 ******************************************************************************** 2025-09-09T01:55:56,882 ############################ 2025-09-09T01:55:56,882 # Package would be ignored # 2025-09-09T01:55:56,882 ############################ 2025-09-09T01:55:56,883 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-09T01:55:56,883 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,883 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,883 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-09T01:55:56,883 to the `packages` configuration field. 2025-09-09T01:55:56,883 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,883 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,883 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,883 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,884 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-09T01:55:56,884 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-09T01:55:56,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,884 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,884 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,884 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,884 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,885 even if it does not contain any `.py` files. 2025-09-09T01:55:56,885 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,885 directory, all directories are treated like packages. 2025-09-09T01:55:56,885 ******************************************************************************** 2025-09-09T01:55:56,885 !! 2025-09-09T01:55:56,885 check.warn(importable) 2025-09-09T01:55:56,885 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-09T01:55:56,885 !! 2025-09-09T01:55:56,886 ******************************************************************************** 2025-09-09T01:55:56,886 ############################ 2025-09-09T01:55:56,886 # Package would be ignored # 2025-09-09T01:55:56,886 ############################ 2025-09-09T01:55:56,886 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-09T01:55:56,886 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,886 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,886 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-09T01:55:56,886 to the `packages` configuration field. 2025-09-09T01:55:56,887 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,887 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,887 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,887 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,887 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,887 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-09T01:55:56,887 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-09T01:55:56,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,888 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,888 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,888 even if it does not contain any `.py` files. 2025-09-09T01:55:56,888 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,888 directory, all directories are treated like packages. 2025-09-09T01:55:56,889 ******************************************************************************** 2025-09-09T01:55:56,889 !! 2025-09-09T01:55:56,889 check.warn(importable) 2025-09-09T01:55:56,889 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-09T01:55:56,889 !! 2025-09-09T01:55:56,889 ******************************************************************************** 2025-09-09T01:55:56,889 ############################ 2025-09-09T01:55:56,889 # Package would be ignored # 2025-09-09T01:55:56,889 ############################ 2025-09-09T01:55:56,889 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-09T01:55:56,890 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,890 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,890 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-09T01:55:56,890 to the `packages` configuration field. 2025-09-09T01:55:56,890 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,890 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,890 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,890 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,891 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-09T01:55:56,891 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-09T01:55:56,891 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,891 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,891 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,891 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,892 even if it does not contain any `.py` files. 2025-09-09T01:55:56,892 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,892 directory, all directories are treated like packages. 2025-09-09T01:55:56,892 ******************************************************************************** 2025-09-09T01:55:56,892 !! 2025-09-09T01:55:56,892 check.warn(importable) 2025-09-09T01:55:56,892 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-09T01:55:56,892 !! 2025-09-09T01:55:56,892 ******************************************************************************** 2025-09-09T01:55:56,892 ############################ 2025-09-09T01:55:56,893 # Package would be ignored # 2025-09-09T01:55:56,893 ############################ 2025-09-09T01:55:56,893 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-09T01:55:56,893 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,893 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,893 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-09T01:55:56,893 to the `packages` configuration field. 2025-09-09T01:55:56,893 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,893 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,894 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,894 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,894 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-09T01:55:56,894 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-09T01:55:56,894 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,894 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,894 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,895 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,895 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,895 even if it does not contain any `.py` files. 2025-09-09T01:55:56,895 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,895 directory, all directories are treated like packages. 2025-09-09T01:55:56,895 ******************************************************************************** 2025-09-09T01:55:56,895 !! 2025-09-09T01:55:56,895 check.warn(importable) 2025-09-09T01:55:56,895 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-09T01:55:56,896 !! 2025-09-09T01:55:56,896 ******************************************************************************** 2025-09-09T01:55:56,896 ############################ 2025-09-09T01:55:56,896 # Package would be ignored # 2025-09-09T01:55:56,896 ############################ 2025-09-09T01:55:56,896 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-09T01:55:56,896 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,896 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,896 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-09T01:55:56,896 to the `packages` configuration field. 2025-09-09T01:55:56,897 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,897 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,897 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,897 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-09T01:55:56,897 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-09T01:55:56,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,898 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,898 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,898 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,898 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,898 even if it does not contain any `.py` files. 2025-09-09T01:55:56,898 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,899 directory, all directories are treated like packages. 2025-09-09T01:55:56,899 ******************************************************************************** 2025-09-09T01:55:56,899 !! 2025-09-09T01:55:56,899 check.warn(importable) 2025-09-09T01:55:56,899 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-09T01:55:56,899 !! 2025-09-09T01:55:56,899 ******************************************************************************** 2025-09-09T01:55:56,899 ############################ 2025-09-09T01:55:56,899 # Package would be ignored # 2025-09-09T01:55:56,899 ############################ 2025-09-09T01:55:56,900 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-09T01:55:56,900 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,900 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,900 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-09T01:55:56,900 to the `packages` configuration field. 2025-09-09T01:55:56,900 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,900 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,900 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,901 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-09T01:55:56,901 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-09T01:55:56,901 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,901 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,901 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,902 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,902 even if it does not contain any `.py` files. 2025-09-09T01:55:56,902 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,902 directory, all directories are treated like packages. 2025-09-09T01:55:56,902 ******************************************************************************** 2025-09-09T01:55:56,902 !! 2025-09-09T01:55:56,902 check.warn(importable) 2025-09-09T01:55:56,902 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-09T01:55:56,903 !! 2025-09-09T01:55:56,903 ******************************************************************************** 2025-09-09T01:55:56,903 ############################ 2025-09-09T01:55:56,903 # Package would be ignored # 2025-09-09T01:55:56,903 ############################ 2025-09-09T01:55:56,903 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-09T01:55:56,903 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,903 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,903 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-09T01:55:56,903 to the `packages` configuration field. 2025-09-09T01:55:56,904 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,904 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,904 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,904 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,904 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-09T01:55:56,904 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-09T01:55:56,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,905 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,905 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,905 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,905 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,905 even if it does not contain any `.py` files. 2025-09-09T01:55:56,905 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,906 directory, all directories are treated like packages. 2025-09-09T01:55:56,906 ******************************************************************************** 2025-09-09T01:55:56,906 !! 2025-09-09T01:55:56,906 check.warn(importable) 2025-09-09T01:55:56,906 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,906 !! 2025-09-09T01:55:56,906 ******************************************************************************** 2025-09-09T01:55:56,906 ############################ 2025-09-09T01:55:56,906 # Package would be ignored # 2025-09-09T01:55:56,906 ############################ 2025-09-09T01:55:56,907 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,907 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,907 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,907 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-09T01:55:56,907 to the `packages` configuration field. 2025-09-09T01:55:56,907 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,907 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,908 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,908 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,908 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-09T01:55:56,908 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-09T01:55:56,908 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,908 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,908 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,908 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,909 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,909 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,909 even if it does not contain any `.py` files. 2025-09-09T01:55:56,909 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,909 directory, all directories are treated like packages. 2025-09-09T01:55:56,909 ******************************************************************************** 2025-09-09T01:55:56,909 !! 2025-09-09T01:55:56,909 check.warn(importable) 2025-09-09T01:55:56,909 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-09T01:55:56,910 !! 2025-09-09T01:55:56,910 ******************************************************************************** 2025-09-09T01:55:56,910 ############################ 2025-09-09T01:55:56,910 # Package would be ignored # 2025-09-09T01:55:56,910 ############################ 2025-09-09T01:55:56,910 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-09T01:55:56,910 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,910 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,910 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-09T01:55:56,911 to the `packages` configuration field. 2025-09-09T01:55:56,911 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,911 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,911 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,911 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,911 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,911 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-09T01:55:56,911 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-09T01:55:56,912 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,912 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,912 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,912 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,912 even if it does not contain any `.py` files. 2025-09-09T01:55:56,912 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,913 directory, all directories are treated like packages. 2025-09-09T01:55:56,913 ******************************************************************************** 2025-09-09T01:55:56,913 !! 2025-09-09T01:55:56,913 check.warn(importable) 2025-09-09T01:55:56,913 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-09T01:55:56,913 !! 2025-09-09T01:55:56,913 ******************************************************************************** 2025-09-09T01:55:56,913 ############################ 2025-09-09T01:55:56,913 # Package would be ignored # 2025-09-09T01:55:56,913 ############################ 2025-09-09T01:55:56,914 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-09T01:55:56,914 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,914 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,914 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-09T01:55:56,914 to the `packages` configuration field. 2025-09-09T01:55:56,914 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,914 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,914 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,915 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-09T01:55:56,915 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-09T01:55:56,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,915 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,915 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,915 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,916 even if it does not contain any `.py` files. 2025-09-09T01:55:56,916 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,916 directory, all directories are treated like packages. 2025-09-09T01:55:56,916 ******************************************************************************** 2025-09-09T01:55:56,916 !! 2025-09-09T01:55:56,916 check.warn(importable) 2025-09-09T01:55:56,916 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-09T01:55:56,916 !! 2025-09-09T01:55:56,917 ******************************************************************************** 2025-09-09T01:55:56,917 ############################ 2025-09-09T01:55:56,917 # Package would be ignored # 2025-09-09T01:55:56,917 ############################ 2025-09-09T01:55:56,917 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-09T01:55:56,917 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,917 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,917 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-09T01:55:56,917 to the `packages` configuration field. 2025-09-09T01:55:56,918 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,918 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,918 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,918 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,918 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-09T01:55:56,918 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-09T01:55:56,918 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,918 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,919 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,919 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,919 even if it does not contain any `.py` files. 2025-09-09T01:55:56,919 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,919 directory, all directories are treated like packages. 2025-09-09T01:55:56,919 ******************************************************************************** 2025-09-09T01:55:56,920 !! 2025-09-09T01:55:56,920 check.warn(importable) 2025-09-09T01:55:56,920 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,920 !! 2025-09-09T01:55:56,920 ******************************************************************************** 2025-09-09T01:55:56,920 ############################ 2025-09-09T01:55:56,920 # Package would be ignored # 2025-09-09T01:55:56,920 ############################ 2025-09-09T01:55:56,920 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-09T01:55:56,920 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,921 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,921 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-09T01:55:56,921 to the `packages` configuration field. 2025-09-09T01:55:56,921 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,921 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,921 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,921 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,922 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-09T01:55:56,922 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-09T01:55:56,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,922 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,922 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,922 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,923 even if it does not contain any `.py` files. 2025-09-09T01:55:56,923 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,923 directory, all directories are treated like packages. 2025-09-09T01:55:56,923 ******************************************************************************** 2025-09-09T01:55:56,923 !! 2025-09-09T01:55:56,923 check.warn(importable) 2025-09-09T01:55:56,923 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-09T01:55:56,923 !! 2025-09-09T01:55:56,923 ******************************************************************************** 2025-09-09T01:55:56,924 ############################ 2025-09-09T01:55:56,924 # Package would be ignored # 2025-09-09T01:55:56,924 ############################ 2025-09-09T01:55:56,924 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-09T01:55:56,924 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,924 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,924 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-09T01:55:56,924 to the `packages` configuration field. 2025-09-09T01:55:56,924 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,924 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,925 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,925 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,925 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-09T01:55:56,925 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-09T01:55:56,925 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,925 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,925 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,926 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,926 even if it does not contain any `.py` files. 2025-09-09T01:55:56,926 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,926 directory, all directories are treated like packages. 2025-09-09T01:55:56,926 ******************************************************************************** 2025-09-09T01:55:56,927 !! 2025-09-09T01:55:56,927 check.warn(importable) 2025-09-09T01:55:56,927 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,927 !! 2025-09-09T01:55:56,927 ******************************************************************************** 2025-09-09T01:55:56,927 ############################ 2025-09-09T01:55:56,927 # Package would be ignored # 2025-09-09T01:55:56,927 ############################ 2025-09-09T01:55:56,927 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-09T01:55:56,927 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,928 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,928 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-09T01:55:56,928 to the `packages` configuration field. 2025-09-09T01:55:56,928 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,928 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,928 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,928 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,929 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-09T01:55:56,929 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-09T01:55:56,929 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,929 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,929 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,929 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,929 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,930 even if it does not contain any `.py` files. 2025-09-09T01:55:56,930 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,930 directory, all directories are treated like packages. 2025-09-09T01:55:56,930 ******************************************************************************** 2025-09-09T01:55:56,930 !! 2025-09-09T01:55:56,930 check.warn(importable) 2025-09-09T01:55:56,930 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,930 !! 2025-09-09T01:55:56,930 ******************************************************************************** 2025-09-09T01:55:56,930 ############################ 2025-09-09T01:55:56,931 # Package would be ignored # 2025-09-09T01:55:56,931 ############################ 2025-09-09T01:55:56,931 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-09T01:55:56,931 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,931 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,931 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-09T01:55:56,931 to the `packages` configuration field. 2025-09-09T01:55:56,931 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,931 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,932 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,932 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-09T01:55:56,932 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-09T01:55:56,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,932 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,932 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,933 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,933 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,933 even if it does not contain any `.py` files. 2025-09-09T01:55:56,933 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,933 directory, all directories are treated like packages. 2025-09-09T01:55:56,933 ******************************************************************************** 2025-09-09T01:55:56,933 !! 2025-09-09T01:55:56,933 check.warn(importable) 2025-09-09T01:55:56,933 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,934 !! 2025-09-09T01:55:56,934 ******************************************************************************** 2025-09-09T01:55:56,934 ############################ 2025-09-09T01:55:56,934 # Package would be ignored # 2025-09-09T01:55:56,934 ############################ 2025-09-09T01:55:56,934 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-09T01:55:56,934 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,934 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,934 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-09T01:55:56,934 to the `packages` configuration field. 2025-09-09T01:55:56,935 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,935 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,935 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,935 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,935 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,935 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-09T01:55:56,935 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-09T01:55:56,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,936 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,936 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,936 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,936 even if it does not contain any `.py` files. 2025-09-09T01:55:56,936 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,937 directory, all directories are treated like packages. 2025-09-09T01:55:56,937 ******************************************************************************** 2025-09-09T01:55:56,937 !! 2025-09-09T01:55:56,937 check.warn(importable) 2025-09-09T01:55:56,937 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,937 !! 2025-09-09T01:55:56,937 ******************************************************************************** 2025-09-09T01:55:56,937 ############################ 2025-09-09T01:55:56,937 # Package would be ignored # 2025-09-09T01:55:56,937 ############################ 2025-09-09T01:55:56,938 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-09T01:55:56,938 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,938 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,938 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-09T01:55:56,938 to the `packages` configuration field. 2025-09-09T01:55:56,938 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,938 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,939 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,939 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-09T01:55:56,939 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-09T01:55:56,939 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,939 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,939 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,939 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,940 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,940 even if it does not contain any `.py` files. 2025-09-09T01:55:56,940 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,940 directory, all directories are treated like packages. 2025-09-09T01:55:56,940 ******************************************************************************** 2025-09-09T01:55:56,940 !! 2025-09-09T01:55:56,940 check.warn(importable) 2025-09-09T01:55:56,941 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,941 !! 2025-09-09T01:55:56,941 ******************************************************************************** 2025-09-09T01:55:56,941 ############################ 2025-09-09T01:55:56,941 # Package would be ignored # 2025-09-09T01:55:56,941 ############################ 2025-09-09T01:55:56,941 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-09T01:55:56,941 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,941 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,941 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-09T01:55:56,942 to the `packages` configuration field. 2025-09-09T01:55:56,942 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,942 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,942 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,942 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,942 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-09T01:55:56,943 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-09T01:55:56,943 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,943 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,943 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,943 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,943 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,943 even if it does not contain any `.py` files. 2025-09-09T01:55:56,944 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,944 directory, all directories are treated like packages. 2025-09-09T01:55:56,944 ******************************************************************************** 2025-09-09T01:55:56,944 !! 2025-09-09T01:55:56,944 check.warn(importable) 2025-09-09T01:55:56,944 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,944 !! 2025-09-09T01:55:56,944 ******************************************************************************** 2025-09-09T01:55:56,944 ############################ 2025-09-09T01:55:56,945 # Package would be ignored # 2025-09-09T01:55:56,945 ############################ 2025-09-09T01:55:56,945 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-09T01:55:56,945 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,945 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,945 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-09T01:55:56,945 to the `packages` configuration field. 2025-09-09T01:55:56,945 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,945 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,945 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,946 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,946 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,946 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-09T01:55:56,946 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-09T01:55:56,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,946 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,947 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,947 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,947 even if it does not contain any `.py` files. 2025-09-09T01:55:56,947 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,947 directory, all directories are treated like packages. 2025-09-09T01:55:56,947 ******************************************************************************** 2025-09-09T01:55:56,947 !! 2025-09-09T01:55:56,948 check.warn(importable) 2025-09-09T01:55:56,948 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,948 !! 2025-09-09T01:55:56,948 ******************************************************************************** 2025-09-09T01:55:56,948 ############################ 2025-09-09T01:55:56,948 # Package would be ignored # 2025-09-09T01:55:56,948 ############################ 2025-09-09T01:55:56,948 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-09T01:55:56,948 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,949 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,949 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-09T01:55:56,949 to the `packages` configuration field. 2025-09-09T01:55:56,949 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,949 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,949 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,949 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,950 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-09T01:55:56,950 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-09T01:55:56,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,950 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,950 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,951 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,951 even if it does not contain any `.py` files. 2025-09-09T01:55:56,951 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,951 directory, all directories are treated like packages. 2025-09-09T01:55:56,951 ******************************************************************************** 2025-09-09T01:55:56,951 !! 2025-09-09T01:55:56,951 check.warn(importable) 2025-09-09T01:55:56,951 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-09T01:55:56,951 !! 2025-09-09T01:55:56,952 ******************************************************************************** 2025-09-09T01:55:56,952 ############################ 2025-09-09T01:55:56,952 # Package would be ignored # 2025-09-09T01:55:56,952 ############################ 2025-09-09T01:55:56,952 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-09T01:55:56,952 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,952 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,952 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-09T01:55:56,952 to the `packages` configuration field. 2025-09-09T01:55:56,953 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,953 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,953 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,953 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,953 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-09T01:55:56,953 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-09T01:55:56,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,954 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,954 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,954 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,954 even if it does not contain any `.py` files. 2025-09-09T01:55:56,954 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,954 directory, all directories are treated like packages. 2025-09-09T01:55:56,955 ******************************************************************************** 2025-09-09T01:55:56,955 !! 2025-09-09T01:55:56,955 check.warn(importable) 2025-09-09T01:55:56,955 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-09T01:55:56,955 !! 2025-09-09T01:55:56,955 ******************************************************************************** 2025-09-09T01:55:56,955 ############################ 2025-09-09T01:55:56,955 # Package would be ignored # 2025-09-09T01:55:56,955 ############################ 2025-09-09T01:55:56,956 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-09T01:55:56,956 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,956 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,956 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-09T01:55:56,956 to the `packages` configuration field. 2025-09-09T01:55:56,956 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,956 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,956 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,957 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,957 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-09T01:55:56,957 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-09T01:55:56,957 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,957 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,957 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,957 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,958 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,958 even if it does not contain any `.py` files. 2025-09-09T01:55:56,958 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,958 directory, all directories are treated like packages. 2025-09-09T01:55:56,958 ******************************************************************************** 2025-09-09T01:55:56,958 !! 2025-09-09T01:55:56,958 check.warn(importable) 2025-09-09T01:55:56,959 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-09T01:55:56,959 !! 2025-09-09T01:55:56,959 ******************************************************************************** 2025-09-09T01:55:56,959 ############################ 2025-09-09T01:55:56,959 # Package would be ignored # 2025-09-09T01:55:56,959 ############################ 2025-09-09T01:55:56,959 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-09T01:55:56,959 but it is absent from setuptools' `packages` configuration. 2025-09-09T01:55:56,959 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T01:55:56,960 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-09T01:55:56,960 to the `packages` configuration field. 2025-09-09T01:55:56,960 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T01:55:56,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T01:55:56,960 instead of `find_packages(...)`/`find:`). 2025-09-09T01:55:56,960 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T01:55:56,960 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T01:55:56,960 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-09T01:55:56,961 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-09T01:55:56,961 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T01:55:56,961 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T01:55:56,961 combination with a more fine grained `package-data` configuration. 2025-09-09T01:55:56,961 You can read more about "package data files" on setuptools documentation page: 2025-09-09T01:55:56,961 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T01:55:56,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T01:55:56,961 even if it does not contain any `.py` files. 2025-09-09T01:55:56,962 On the other hand, currently there is no concept of package data 2025-09-09T01:55:56,962 directory, all directories are treated like packages. 2025-09-09T01:55:56,962 ******************************************************************************** 2025-09-09T01:55:56,962 !! 2025-09-09T01:55:56,962 check.warn(importable) 2025-09-09T01:55:56,962 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T01:55:56,962 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T01:55:56,962 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,962 copying lightdock/test/util/golden_data/lightdock_1czy_peptide.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,962 copying lightdock/test/util/golden_data/lightdock_1czy_protein.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/util/golden_data/pdbs.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T01:55:56,963 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T01:55:56,963 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T01:55:56,963 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T01:55:56,963 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T01:55:56,963 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T01:55:56,964 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T01:55:56,964 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T01:55:56,964 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T01:55:56,964 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T01:55:56,964 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T01:55:56,964 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,964 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,964 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,964 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,964 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,965 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,966 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,967 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,968 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,969 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,969 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,971 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,971 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,972 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T01:55:56,974 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T01:55:56,974 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T01:55:56,975 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T01:55:56,976 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,976 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,977 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,981 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,981 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,982 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,983 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,984 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,984 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,985 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,985 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,986 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,987 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,987 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T01:55:56,988 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,988 copying lightdock/test/prep/golden_data/3p0g/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,989 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,990 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,990 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,991 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,992 copying lightdock/test/prep/golden_data/3p0g/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,993 copying lightdock/test/prep/golden_data/3p0g/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,994 copying lightdock/test/prep/golden_data/3p0g/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T01:55:56,994 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,995 copying lightdock/test/prep/golden_data/3p0g/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,995 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,996 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,996 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,997 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,997 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,998 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T01:55:56,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:56,999 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:56,999 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:57,000 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:57,001 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:57,001 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T01:55:57,002 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T01:55:57,002 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T01:55:57,003 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T01:55:57,003 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T01:55:57,004 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T01:55:57,004 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,004 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,005 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,006 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,007 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,007 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,008 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,009 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,009 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,010 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,010 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,011 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,011 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,012 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,012 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T01:55:57,013 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T01:55:57,013 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T01:55:57,014 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T01:55:57,014 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,014 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,015 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,016 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,017 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,017 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,018 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,018 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,019 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,020 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,020 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T01:55:57,021 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,021 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,022 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,022 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,023 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,023 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,024 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,025 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,025 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,026 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,026 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,027 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,028 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,028 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,029 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,029 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,030 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T01:55:57,030 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T01:55:57,031 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T01:55:57,031 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T01:55:57,032 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T01:55:57,032 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T01:55:57,033 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T01:55:57,033 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T01:55:57,033 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T01:55:57,034 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T01:55:57,035 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T01:55:57,035 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T01:55:57,035 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T01:55:57,036 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T01:55:57,036 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T01:55:57,037 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T01:55:57,037 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,038 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,038 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,039 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,040 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,041 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,041 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,042 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,043 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,043 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T01:55:57,044 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T01:55:57,044 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T01:55:57,045 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T01:55:57,045 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T01:55:57,046 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T01:55:57,046 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T01:55:57,046 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T01:55:57,047 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T01:55:57,048 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,048 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,048 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,049 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,050 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,051 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,051 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,052 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,053 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,053 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,054 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T01:55:57,054 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T01:55:57,055 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T01:55:57,055 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T01:55:57,056 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T01:55:57,056 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T01:55:57,057 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T01:55:57,057 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T01:55:57,058 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T01:55:57,058 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,058 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,059 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,060 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,061 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,061 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,062 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,062 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,063 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,064 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,065 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T01:55:57,065 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,065 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,066 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,066 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,067 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,068 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,068 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,069 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,069 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,070 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,071 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,071 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,072 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,072 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,073 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,073 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,074 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T01:55:57,075 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T01:55:57,075 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T01:55:57,075 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T01:55:57,076 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T01:55:57,076 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T01:55:57,077 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T01:55:57,077 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T01:55:57,078 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T01:55:57,078 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T01:55:57,079 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T01:55:57,079 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T01:55:57,080 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T01:55:57,080 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T01:55:57,080 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T01:55:57,081 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T01:55:57,081 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,082 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,082 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,083 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,084 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,084 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,085 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,086 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,087 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,088 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,088 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T01:55:57,089 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T01:55:57,089 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T01:55:57,089 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T01:55:57,090 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T01:55:57,091 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T01:55:57,091 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T01:55:57,091 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T01:55:57,092 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T01:55:57,092 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,093 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,093 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,095 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,096 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,096 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,097 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,099 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,099 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,100 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T01:55:57,100 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T01:55:57,101 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T01:55:57,101 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T01:55:57,102 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T01:55:57,102 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T01:55:57,103 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T01:55:57,103 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T01:55:57,104 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T01:55:57,104 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,104 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,105 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,107 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,107 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,108 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,109 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,111 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,111 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,112 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,117 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T01:55:57,117 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T01:55:57,118 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T01:55:57,118 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T01:55:57,119 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T01:55:57,119 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T01:55:57,120 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T01:55:57,120 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T01:55:57,121 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T01:55:57,121 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,121 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,122 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,123 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,124 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,124 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,125 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,125 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,126 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,127 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,127 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T01:55:57,128 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,128 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,129 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,129 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,130 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,130 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,131 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,132 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,132 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,133 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,133 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,134 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,135 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,135 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,136 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,136 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,137 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T01:55:57,137 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T01:55:57,138 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T01:55:57,138 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T01:55:57,139 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T01:55:57,139 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T01:55:57,139 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T01:55:57,140 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T01:55:57,140 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T01:55:57,141 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T01:55:57,141 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T01:55:57,142 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T01:55:57,142 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T01:55:57,143 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T01:55:57,143 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T01:55:57,144 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T01:55:57,144 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,144 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,145 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,146 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,147 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,147 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,148 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,149 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,149 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,150 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,150 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T01:55:57,151 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T01:55:57,151 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T01:55:57,152 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T01:55:57,152 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T01:55:57,153 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T01:55:57,153 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T01:55:57,154 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T01:55:57,154 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T01:55:57,155 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T01:55:57,155 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,156 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,156 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,157 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,158 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,158 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,159 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,160 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,161 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,161 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,162 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T01:55:57,162 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T01:55:57,163 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T01:55:57,163 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T01:55:57,164 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T01:55:57,164 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T01:55:57,165 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T01:55:57,165 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T01:55:57,166 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T01:55:57,166 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,166 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,167 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,168 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,169 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,169 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,170 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,170 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,171 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,172 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,173 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T01:55:57,173 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T01:55:57,173 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T01:55:57,174 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T01:55:57,174 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T01:55:57,175 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T01:55:57,175 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T01:55:57,176 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T01:55:57,176 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T01:55:57,177 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T01:55:57,177 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,178 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,178 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,179 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,180 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,180 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,181 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,182 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,183 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,183 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,184 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T01:55:57,184 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T01:55:57,185 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T01:55:57,185 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T01:55:57,186 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T01:55:57,186 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T01:55:57,187 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T01:55:57,187 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T01:55:57,188 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T01:55:57,188 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,188 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,189 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,190 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,190 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,191 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,192 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,192 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,193 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,194 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,194 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T01:55:57,195 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T01:55:57,195 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T01:55:57,196 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T01:55:57,196 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T01:55:57,197 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T01:55:57,198 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T01:55:57,198 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T01:55:57,198 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T01:55:57,199 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,199 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,200 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,201 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,201 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,202 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,203 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,204 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,204 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,205 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T01:55:57,205 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T01:55:57,206 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T01:55:57,206 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T01:55:57,207 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T01:55:57,207 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T01:55:57,208 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T01:55:57,208 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T01:55:57,208 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T01:55:57,209 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,209 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,210 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,211 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,211 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,212 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,213 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,213 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,214 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,215 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,215 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T01:55:57,216 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T01:55:57,216 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T01:55:57,217 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T01:55:57,217 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T01:55:57,218 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T01:55:57,219 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T01:55:57,219 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T01:55:57,219 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T01:55:57,220 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,220 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,221 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,221 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,223 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,224 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,225 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,226 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,226 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,228 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,228 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,229 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T01:55:57,229 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T01:55:57,230 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T01:55:57,230 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T01:55:57,231 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T01:55:57,231 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T01:55:57,232 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T01:55:57,232 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T01:55:57,232 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T01:55:57,233 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,233 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,234 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,235 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,235 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,236 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,237 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,238 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,239 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,239 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T01:55:57,240 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T01:55:57,240 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T01:55:57,240 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T01:55:57,241 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T01:55:57,242 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T01:55:57,242 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T01:55:57,242 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T01:55:57,243 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T01:55:57,243 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T01:55:57,244 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,244 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,245 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,246 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,247 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,248 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,249 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,250 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,250 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,251 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T01:55:57,251 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T01:55:57,251 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T01:55:57,252 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T01:55:57,252 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T01:55:57,253 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T01:55:57,254 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T01:55:57,254 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T01:55:57,254 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T01:55:57,255 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,255 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,256 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,257 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,258 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,258 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,259 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,260 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,261 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,263 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T01:55:57,263 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,264 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,264 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,265 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,265 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,266 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,266 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,267 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,268 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,268 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,269 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,269 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,270 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,270 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,271 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,271 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,272 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T01:55:57,272 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,273 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,275 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,278 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,279 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,281 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,281 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,283 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T01:55:57,284 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,284 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,285 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,285 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,286 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,286 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,287 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,287 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,288 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,288 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,289 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,289 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,290 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,290 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,291 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,291 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,292 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,293 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,293 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,294 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,294 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,295 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,295 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,296 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,296 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,297 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,298 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,298 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,299 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,299 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,300 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,300 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,301 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,301 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,302 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,303 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,303 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,304 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,304 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,305 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,305 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,306 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,306 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,307 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T01:55:57,307 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,307 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,310 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,313 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,314 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,315 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,316 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,318 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,319 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T01:55:57,319 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,320 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,320 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,321 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,321 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,322 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,322 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,323 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,323 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,324 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,324 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,325 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,325 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,326 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,326 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,327 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,328 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,328 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,329 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,329 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,330 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,330 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,331 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,331 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,332 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,332 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,333 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,334 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,334 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,335 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,335 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,336 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,336 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,337 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,337 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,338 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,338 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,339 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T01:55:57,339 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,340 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,340 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,341 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,342 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,343 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,344 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,344 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,345 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,347 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,348 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T01:55:57,348 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,349 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,349 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,350 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,350 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,351 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,351 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,352 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T01:55:57,352 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,353 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,356 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,357 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,358 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,359 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,359 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,360 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,360 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,362 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,362 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T01:55:57,363 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T01:55:57,363 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T01:55:57,363 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T01:55:57,364 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T01:55:57,365 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T01:55:57,366 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T01:55:57,366 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T01:55:57,366 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T01:55:57,367 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,367 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,368 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,369 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,370 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,370 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,371 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,372 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,373 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,373 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T01:55:57,374 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T01:55:57,374 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T01:55:57,374 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T01:55:57,375 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T01:55:57,375 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T01:55:57,376 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T01:55:57,376 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T01:55:57,377 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T01:55:57,377 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,378 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,381 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,382 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,383 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,384 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,384 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,385 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,385 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,386 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,387 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T01:55:57,388 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T01:55:57,388 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T01:55:57,388 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T01:55:57,389 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T01:55:57,390 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T01:55:57,391 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T01:55:57,391 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T01:55:57,392 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T01:55:57,392 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T01:55:57,392 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T01:55:57,393 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T01:55:57,394 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T01:55:57,394 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T01:55:57,395 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T01:55:57,396 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T01:55:57,413 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T01:55:57,434 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T01:55:57,436 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T01:55:57,437 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T01:55:57,439 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T01:55:57,439 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,439 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,441 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,442 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,442 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,444 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,444 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,445 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,446 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,447 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,450 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,451 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,451 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,452 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,453 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,453 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,454 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,455 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,455 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,456 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T01:55:57,456 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T01:55:57,457 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T01:55:57,457 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T01:55:57,459 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T01:55:57,461 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,461 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,461 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,462 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,463 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,463 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,464 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,464 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,465 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,466 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,466 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,467 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,467 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,468 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T01:55:57,468 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T01:55:57,469 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T01:55:57,469 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T01:55:57,470 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T01:55:57,471 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T01:55:57,471 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T01:55:57,471 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T01:55:57,472 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T01:55:57,473 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T01:55:57,473 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T01:55:57,473 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T01:55:57,474 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T01:55:57,475 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T01:55:57,475 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T01:55:57,475 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T01:55:57,476 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T01:55:57,477 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,477 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,477 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,478 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,479 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,480 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,481 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,482 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,483 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,485 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,486 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,487 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,488 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,489 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T01:55:57,490 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T01:55:57,491 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T01:55:57,491 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T01:55:57,492 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T01:55:57,492 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T01:55:57,493 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T01:55:57,494 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T01:55:57,496 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,496 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,497 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,497 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,498 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,500 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,501 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,503 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,505 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,506 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,508 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,510 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,511 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,513 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,515 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,516 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,518 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,520 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,521 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,523 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,525 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,527 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,528 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,530 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,532 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,533 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,535 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,536 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,538 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,540 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,542 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,543 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,545 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,547 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,548 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,550 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,552 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,553 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,555 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,557 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,558 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,560 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,562 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,563 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,565 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,567 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,568 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,570 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,572 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,573 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,575 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,577 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,579 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,580 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T01:55:57,582 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,582 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,583 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,583 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,584 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,586 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,587 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,589 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,591 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,592 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,594 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,596 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,597 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,599 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,601 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,602 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,604 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,606 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,607 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,609 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,611 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,612 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,614 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,616 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,617 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,619 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,621 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,622 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,624 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,626 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,627 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,629 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,631 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,632 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,634 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,636 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,637 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,639 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,641 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,642 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,644 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,646 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,647 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,649 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,651 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,652 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,654 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,656 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,657 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,659 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,661 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,662 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,664 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,666 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T01:55:57,667 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,667 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,668 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,669 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,669 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,671 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,673 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,674 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,676 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,678 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,679 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,681 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,683 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,684 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,686 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,688 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,689 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,691 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,693 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,694 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,696 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,698 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,699 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,701 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,703 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,704 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,706 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,708 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,709 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,711 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,713 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,714 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,716 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,718 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,719 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,721 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,723 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,724 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,726 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,728 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,729 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,731 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,733 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,734 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,736 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,738 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,739 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,741 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,743 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,744 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,746 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,748 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,749 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,751 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T01:55:57,753 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,753 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,754 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,754 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,755 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,756 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,758 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,760 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,761 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,763 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,765 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,767 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,768 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,770 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,772 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,773 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,775 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,777 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,779 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,780 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,782 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,784 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,785 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,787 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,789 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,790 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,792 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,794 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,795 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,797 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,799 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,800 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,802 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,804 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,805 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,807 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,809 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,811 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,812 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,814 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,816 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,817 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,819 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,821 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,822 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,824 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,826 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,827 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,829 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,831 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,832 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,834 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,836 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,837 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T01:55:57,839 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,839 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,840 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,841 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,841 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,843 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,844 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,844 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T01:55:57,845 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T01:55:57,846 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T01:55:57,846 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T01:55:57,847 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,847 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,849 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,849 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,851 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,852 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,853 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,856 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,857 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,857 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,859 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,860 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,862 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,864 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,865 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,867 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,869 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,871 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,872 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T01:55:57,874 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,874 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,876 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,876 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,878 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,881 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T01:55:57,881 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T01:55:57,881 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T01:55:57,882 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T01:55:57,883 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T01:55:57,884 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T01:55:57,886 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,887 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,887 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,888 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,889 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,889 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,890 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,891 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,891 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,892 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,893 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,894 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,894 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,895 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,896 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,896 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,897 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,898 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T01:55:57,898 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T01:55:57,899 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T01:55:57,899 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T01:55:57,900 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T01:55:57,900 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T01:55:57,901 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T01:55:57,901 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T01:55:57,902 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T01:55:57,902 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T01:55:57,903 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T01:55:57,903 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T01:55:57,903 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T01:55:57,904 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T01:55:57,904 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T01:55:57,905 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T01:55:57,905 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T01:55:57,929 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T01:55:57,930 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T01:55:57,955 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T01:55:57,971 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T01:55:57,971 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T01:55:57,995 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T01:55:57,996 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T01:55:57,996 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T01:55:57,997 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T01:55:57,998 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T01:55:57,999 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T01:55:57,999 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T01:55:58,000 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T01:55:58,001 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T01:55:58,002 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:58,003 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:58,005 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:58,006 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:58,007 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:58,008 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:58,009 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T01:55:58,023 running build_ext 2025-09-09T01:55:58,358 building 'lightdock.mathutil.cython.cutil' extension 2025-09-09T01:55:58,359 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T01:55:58,359 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-09T01:55:58,710 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-09T01:55:58,711 196 | #include "longintrepr.h" 2025-09-09T01:55:58,711 | ^~~~~~~~~~~~~~~ 2025-09-09T01:55:58,711 compilation terminated. 2025-09-09T01:55:58,715 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-09T01:55:58,897 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T01:55:58,908 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T01:55:58,908 exec(compile('"'"''"'"''"'"' 2025-09-09T01:55:58,908 # This is -- a caller that pip uses to run setup.py 2025-09-09T01:55:58,908 # 2025-09-09T01:55:58,908 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T01:55:58,908 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T01:55:58,908 # - It provides a clear error message when setuptools is not installed. 2025-09-09T01:55:58,908 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T01:55:58,908 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T01:55:58,908 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T01:55:58,908 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T01:55:58,908 import os, sys, tokenize, traceback 2025-09-09T01:55:58,908 2025-09-09T01:55:58,908 try: 2025-09-09T01:55:58,908 import setuptools 2025-09-09T01:55:58,908 except ImportError: 2025-09-09T01:55:58,908 print( 2025-09-09T01:55:58,908 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T01:55:58,908 "the build environment with exception:", 2025-09-09T01:55:58,908 file=sys.stderr, 2025-09-09T01:55:58,908 ) 2025-09-09T01:55:58,908 traceback.print_exc() 2025-09-09T01:55:58,908 sys.exit(1) 2025-09-09T01:55:58,908 2025-09-09T01:55:58,908 __file__ = %r 2025-09-09T01:55:58,908 sys.argv[0] = __file__ 2025-09-09T01:55:58,908 2025-09-09T01:55:58,908 if os.path.exists(__file__): 2025-09-09T01:55:58,908 filename = __file__ 2025-09-09T01:55:58,908 with tokenize.open(__file__) as f: 2025-09-09T01:55:58,908 setup_py_code = f.read() 2025-09-09T01:55:58,908 else: 2025-09-09T01:55:58,908 filename = "" 2025-09-09T01:55:58,908 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T01:55:58,908 2025-09-09T01:55:58,908 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T01:55:58,908 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-5kt3nprn[/] 2025-09-09T01:55:58,909 [bold magenta]cwd[/]: /tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/ 2025-09-09T01:55:58,909 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-09T01:55:58,910 ERROR: Failed building wheel for lightdock 2025-09-09T01:55:58,911 Running setup.py clean for lightdock 2025-09-09T01:55:58,912 Running command python setup.py clean 2025-09-09T01:55:59,433 /tmp/pip-wheel-o_s5nbvp/lightdock_8553bcf597c14a94b35bd861b850c4f4/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T01:55:59,434 !! 2025-09-09T01:55:59,434 ******************************************************************************** 2025-09-09T01:55:59,434 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T01:55:59,434 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T01:55:59,434 calls to avoid build errors in the future. 2025-09-09T01:55:59,434 ******************************************************************************** 2025-09-09T01:55:59,434 !! 2025-09-09T01:55:59,435 from setuptools.command.test import test as TestCommand 2025-09-09T01:55:59,784 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T01:55:59,785 !! 2025-09-09T01:55:59,785 ******************************************************************************** 2025-09-09T01:55:59,785 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T01:55:59,785 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T01:55:59,785 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T01:55:59,785 or your builds will no longer be supported. 2025-09-09T01:55:59,785 ******************************************************************************** 2025-09-09T01:55:59,786 !! 2025-09-09T01:55:59,786 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T01:56:00,848 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T01:56:00,849 !! 2025-09-09T01:56:00,849 ******************************************************************************** 2025-09-09T01:56:00,849 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T01:56:00,849 License :: Free For Educational Use 2025-09-09T01:56:00,849 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T01:56:00,849 ******************************************************************************** 2025-09-09T01:56:00,850 !! 2025-09-09T01:56:00,850 self._finalize_license_expression() 2025-09-09T01:56:00,926 running clean 2025-09-09T01:56:01,078 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T01:56:01,079 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T01:56:01,169 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T01:56:01,169 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T01:56:01,169 removing 'build' 2025-09-09T01:56:01,308 Failed to build lightdock 2025-09-09T01:56:01,309 ERROR: Failed to build one or more wheels 2025-09-09T01:56:01,310 Exception information: 2025-09-09T01:56:01,310 Traceback (most recent call last): 2025-09-09T01:56:01,310 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T01:56:01,310 status = _inner_run() 2025-09-09T01:56:01,310 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T01:56:01,310 return self.run(options, args) 2025-09-09T01:56:01,310 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T01:56:01,310 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T01:56:01,310 return func(self, options, args) 2025-09-09T01:56:01,310 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T01:56:01,310 raise CommandError("Failed to build one or more wheels") 2025-09-09T01:56:01,310 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T01:56:01,314 Removed build tracker: '/tmp/pip-build-tracker-ig7oq3wg'