2025-09-09T02:52:08,255 Created temporary directory: /tmp/pip-build-tracker-56dk377j 2025-09-09T02:52:08,256 Initialized build tracking at /tmp/pip-build-tracker-56dk377j 2025-09-09T02:52:08,256 Created build tracker: /tmp/pip-build-tracker-56dk377j 2025-09-09T02:52:08,256 Entered build tracker: /tmp/pip-build-tracker-56dk377j 2025-09-09T02:52:08,256 Created temporary directory: /tmp/pip-wheel-yd4l_d6h 2025-09-09T02:52:08,259 Created temporary directory: /tmp/pip-ephem-wheel-cache-32qogmts 2025-09-09T02:52:08,315 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T02:52:08,317 2 location(s) to search for versions of lightdock: 2025-09-09T02:52:08,317 * https://pypi.org/simple/lightdock/ 2025-09-09T02:52:08,317 * https://www.piwheels.org/simple/lightdock/ 2025-09-09T02:52:08,317 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-09T02:52:08,318 Getting page https://pypi.org/simple/lightdock/ 2025-09-09T02:52:08,319 Found index url https://pypi.org/simple/ 2025-09-09T02:52:08,388 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-09T02:52:08,393 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,394 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-09T02:52:08,394 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,394 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-09T02:52:08,395 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,395 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-09T02:52:08,395 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,519 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,520 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T02:52:08,521 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-09T02:52:08,521 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-09T02:52:08,543 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-09T02:52:08,544 Collecting lightdock==0.8.0 2025-09-09T02:52:08,546 Created temporary directory: /tmp/pip-unpack-9kf57emm 2025-09-09T02:52:08,877 Downloading lightdock-0.8.0.tar.gz (32.9 MB) 2025-09-09T02:52:17,944 Added lightdock==0.8.0 from https://files.pythonhosted.org/packages/9d/66/4366ead83b69abf8f489d22094b8291be2c478c039dacb5f899a2e4e7ff6/lightdock-0.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-56dk377j' 2025-09-09T02:52:17,945 Running setup.py (path:/tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/setup.py) egg_info for package lightdock 2025-09-09T02:52:17,946 Created temporary directory: /tmp/pip-pip-egg-info-6fw33rg7 2025-09-09T02:52:17,946 Preparing metadata (setup.py): started 2025-09-09T02:52:17,946 Running command python setup.py egg_info 2025-09-09T02:52:18,457 /tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T02:52:18,457 !! 2025-09-09T02:52:18,457 ******************************************************************************** 2025-09-09T02:52:18,457 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T02:52:18,457 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T02:52:18,458 calls to avoid build errors in the future. 2025-09-09T02:52:18,458 ******************************************************************************** 2025-09-09T02:52:18,458 !! 2025-09-09T02:52:18,458 from setuptools.command.test import test as TestCommand 2025-09-09T02:52:18,803 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T02:52:18,803 !! 2025-09-09T02:52:18,804 ******************************************************************************** 2025-09-09T02:52:18,804 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T02:52:18,804 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T02:52:18,804 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T02:52:18,804 or your builds will no longer be supported. 2025-09-09T02:52:18,804 ******************************************************************************** 2025-09-09T02:52:18,804 !! 2025-09-09T02:52:18,805 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T02:52:21,972 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T02:52:21,972 !! 2025-09-09T02:52:21,972 ******************************************************************************** 2025-09-09T02:52:21,972 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T02:52:21,972 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T02:52:21,972 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T02:52:21,973 ******************************************************************************** 2025-09-09T02:52:21,973 !! 2025-09-09T02:52:21,973 self._finalize_license_expression() 2025-09-09T02:52:22,047 running egg_info 2025-09-09T02:52:22,120 creating /tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info 2025-09-09T02:52:22,120 writing /tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/PKG-INFO 2025-09-09T02:52:22,121 writing dependency_links to /tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/dependency_links.txt 2025-09-09T02:52:22,122 writing requirements to /tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/requires.txt 2025-09-09T02:52:22,123 writing top-level names to /tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/top_level.txt 2025-09-09T02:52:22,123 writing manifest file '/tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/SOURCES.txt' 2025-09-09T02:52:22,517 reading manifest file '/tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/SOURCES.txt' 2025-09-09T02:52:22,518 reading manifest template 'MANIFEST.in' 2025-09-09T02:52:22,593 adding license file 'LICENSE' 2025-09-09T02:52:22,631 writing manifest file '/tmp/pip-pip-egg-info-6fw33rg7/lightdock.egg-info/SOURCES.txt' 2025-09-09T02:52:22,770 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T02:52:22,775 Source in /tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca has version 0.8.0, which satisfies requirement lightdock==0.8.0 from https://files.pythonhosted.org/packages/9d/66/4366ead83b69abf8f489d22094b8291be2c478c039dacb5f899a2e4e7ff6/lightdock-0.8.0.tar.gz 2025-09-09T02:52:22,776 Removed lightdock==0.8.0 from https://files.pythonhosted.org/packages/9d/66/4366ead83b69abf8f489d22094b8291be2c478c039dacb5f899a2e4e7ff6/lightdock-0.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-56dk377j' 2025-09-09T02:52:22,782 Created temporary directory: /tmp/pip-unpack-ook22lv7 2025-09-09T02:52:22,783 Created temporary directory: /tmp/pip-unpack-6t53o4h2 2025-09-09T02:52:22,783 Building wheels for collected packages: lightdock 2025-09-09T02:52:22,784 Created temporary directory: /tmp/pip-wheel-emfyed8p 2025-09-09T02:52:22,784 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T02:52:22,786 Building wheel for lightdock (setup.py): started 2025-09-09T02:52:22,786 Destination directory: /tmp/pip-wheel-emfyed8p 2025-09-09T02:52:22,786 Running command python setup.py bdist_wheel 2025-09-09T02:52:23,294 /tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T02:52:23,294 !! 2025-09-09T02:52:23,294 ******************************************************************************** 2025-09-09T02:52:23,294 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T02:52:23,294 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T02:52:23,295 calls to avoid build errors in the future. 2025-09-09T02:52:23,295 ******************************************************************************** 2025-09-09T02:52:23,295 !! 2025-09-09T02:52:23,295 from setuptools.command.test import test as TestCommand 2025-09-09T02:52:23,625 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T02:52:23,625 !! 2025-09-09T02:52:23,625 ******************************************************************************** 2025-09-09T02:52:23,625 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T02:52:23,625 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T02:52:23,625 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T02:52:23,626 or your builds will no longer be supported. 2025-09-09T02:52:23,626 ******************************************************************************** 2025-09-09T02:52:23,626 !! 2025-09-09T02:52:23,626 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T02:52:24,478 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T02:52:24,478 !! 2025-09-09T02:52:24,478 ******************************************************************************** 2025-09-09T02:52:24,478 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T02:52:24,478 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T02:52:24,478 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T02:52:24,479 ******************************************************************************** 2025-09-09T02:52:24,479 !! 2025-09-09T02:52:24,479 self._finalize_license_expression() 2025-09-09T02:52:24,479 running bdist_wheel 2025-09-09T02:52:24,844 running build 2025-09-09T02:52:24,844 running build_py 2025-09-09T02:52:24,921 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T02:52:24,921 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T02:52:24,922 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T02:52:24,922 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T02:52:24,923 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,923 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,924 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,924 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,925 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,925 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,926 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T02:52:24,927 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T02:52:24,927 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T02:52:24,928 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,928 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,929 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,929 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,930 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,930 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,931 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,931 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,932 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T02:52:24,932 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T02:52:24,933 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T02:52:24,933 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T02:52:24,934 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T02:52:24,935 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T02:52:24,935 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T02:52:24,935 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T02:52:24,936 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T02:52:24,937 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T02:52:24,937 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T02:52:24,937 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T02:52:24,938 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T02:52:24,938 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T02:52:24,939 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,939 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,940 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,941 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,941 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,942 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,942 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T02:52:24,943 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T02:52:24,943 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T02:52:24,944 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T02:52:24,944 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T02:52:24,945 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T02:52:24,945 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T02:52:24,946 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T02:52:24,946 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T02:52:24,947 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T02:52:24,947 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T02:52:24,948 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T02:52:24,948 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T02:52:24,949 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,949 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,950 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,950 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,951 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,951 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,952 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,952 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,953 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T02:52:24,954 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T02:52:24,954 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T02:52:24,954 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T02:52:24,955 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T02:52:24,955 copying lightdock/test/util/test_parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T02:52:24,956 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T02:52:24,956 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T02:52:24,957 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,957 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,958 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,958 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,959 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,960 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,960 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,961 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T02:52:24,961 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,962 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,962 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,963 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,963 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,964 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,964 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,965 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,965 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,966 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,966 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T02:52:24,967 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T02:52:24,967 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T02:52:24,968 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T02:52:24,969 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,969 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,969 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,970 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,970 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,971 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,971 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T02:52:24,972 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T02:52:24,972 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T02:52:24,973 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T02:52:24,974 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,974 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,975 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,975 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,976 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,976 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,977 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,977 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T02:52:24,978 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,978 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,979 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,979 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,980 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,980 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,981 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,981 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,982 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,982 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,983 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T02:52:24,984 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T02:52:24,984 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T02:52:24,984 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T02:52:24,985 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,986 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,986 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,987 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,987 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,988 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,988 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,989 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,989 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,990 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,990 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,991 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,991 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,992 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T02:52:24,993 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,993 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,993 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,994 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,994 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,995 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,995 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,996 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,996 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,997 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T02:52:24,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:24,998 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:24,999 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:24,999 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,000 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,000 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,001 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,001 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,002 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,002 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,003 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,003 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T02:52:25,004 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T02:52:25,004 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T02:52:25,005 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T02:52:25,006 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T02:52:25,006 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T02:52:25,006 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T02:52:25,007 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T02:52:25,007 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T02:52:25,008 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T02:52:25,009 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T02:52:25,009 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T02:52:25,009 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T02:52:25,010 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T02:52:25,010 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T02:52:25,011 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T02:52:25,012 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T02:52:25,012 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T02:52:25,012 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T02:52:25,013 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T02:52:25,013 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T02:52:25,014 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T02:52:25,015 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T02:52:25,015 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T02:52:25,016 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T02:52:25,016 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T02:52:25,016 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T02:52:25,017 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T02:52:25,018 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T02:52:25,018 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T02:52:25,018 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T02:52:25,019 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T02:52:25,020 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T02:52:25,020 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T02:52:25,021 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T02:52:25,021 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T02:52:25,022 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T02:52:25,023 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T02:52:25,023 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T02:52:25,024 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T02:52:25,024 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T02:52:25,024 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T02:52:25,025 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T02:52:25,026 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T02:52:25,026 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T02:52:25,027 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T02:52:25,028 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T02:52:25,028 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T02:52:25,028 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T02:52:25,029 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T02:52:25,029 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T02:52:25,030 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T02:52:25,031 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T02:52:25,031 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T02:52:25,032 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T02:52:25,032 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T02:52:25,032 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T02:52:25,033 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T02:52:25,034 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T02:52:25,034 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T02:52:25,035 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T02:52:25,036 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T02:52:25,036 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T02:52:25,036 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T02:52:25,037 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T02:52:25,037 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T02:52:25,038 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T02:52:25,039 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T02:52:25,039 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T02:52:25,039 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T02:52:25,040 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T02:52:25,040 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T02:52:25,041 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T02:52:25,042 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T02:52:25,043 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T02:52:25,043 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T02:52:25,044 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T02:52:25,044 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T02:52:25,044 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T02:52:25,045 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T02:52:25,046 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T02:52:25,046 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T02:52:25,046 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T02:52:25,047 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T02:52:25,047 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T02:52:25,048 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T02:52:25,049 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T02:52:25,049 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T02:52:25,049 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T02:52:25,050 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T02:52:25,050 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T02:52:25,051 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T02:52:25,051 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T02:52:25,053 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T02:52:25,053 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T02:52:25,054 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T02:52:25,054 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T02:52:25,055 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:25,055 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:25,056 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:25,056 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T02:52:25,057 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T02:52:25,057 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T02:52:25,058 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T02:52:25,058 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T02:52:25,059 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:25,059 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:25,060 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:25,060 running egg_info 2025-09-09T02:52:25,135 writing lightdock.egg-info/PKG-INFO 2025-09-09T02:52:25,137 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-09T02:52:25,137 writing requirements to lightdock.egg-info/requires.txt 2025-09-09T02:52:25,138 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-09T02:52:25,242 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T02:52:25,310 reading manifest template 'MANIFEST.in' 2025-09-09T02:52:25,388 adding license file 'LICENSE' 2025-09-09T02:52:25,444 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T02:52:25,446 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-09T02:52:25,446 !! 2025-09-09T02:52:25,446 ******************************************************************************** 2025-09-09T02:52:25,446 ############################ 2025-09-09T02:52:25,447 # Package would be ignored # 2025-09-09T02:52:25,447 ############################ 2025-09-09T02:52:25,447 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-09T02:52:25,447 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,447 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,447 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-09T02:52:25,447 to the `packages` configuration field. 2025-09-09T02:52:25,447 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,448 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,448 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,448 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,448 If you don't want 'lightdock.etc' to be distributed and are 2025-09-09T02:52:25,448 already explicitly excluding 'lightdock.etc' via 2025-09-09T02:52:25,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,448 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,449 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,449 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,449 even if it does not contain any `.py` files. 2025-09-09T02:52:25,449 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,449 directory, all directories are treated like packages. 2025-09-09T02:52:25,449 ******************************************************************************** 2025-09-09T02:52:25,450 !! 2025-09-09T02:52:25,450 check.warn(importable) 2025-09-09T02:52:25,450 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,450 !! 2025-09-09T02:52:25,450 ******************************************************************************** 2025-09-09T02:52:25,450 ############################ 2025-09-09T02:52:25,450 # Package would be ignored # 2025-09-09T02:52:25,450 ############################ 2025-09-09T02:52:25,450 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-09T02:52:25,451 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,451 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,451 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-09T02:52:25,451 to the `packages` configuration field. 2025-09-09T02:52:25,451 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,451 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,451 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,452 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,452 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-09T02:52:25,452 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-09T02:52:25,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,452 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,452 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,453 even if it does not contain any `.py` files. 2025-09-09T02:52:25,453 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,453 directory, all directories are treated like packages. 2025-09-09T02:52:25,453 ******************************************************************************** 2025-09-09T02:52:25,453 !! 2025-09-09T02:52:25,453 check.warn(importable) 2025-09-09T02:52:25,453 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,454 !! 2025-09-09T02:52:25,454 ******************************************************************************** 2025-09-09T02:52:25,454 ############################ 2025-09-09T02:52:25,454 # Package would be ignored # 2025-09-09T02:52:25,454 ############################ 2025-09-09T02:52:25,454 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-09T02:52:25,454 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,454 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-09T02:52:25,455 to the `packages` configuration field. 2025-09-09T02:52:25,455 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,455 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,455 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,455 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-09T02:52:25,455 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-09T02:52:25,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,456 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,456 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,456 even if it does not contain any `.py` files. 2025-09-09T02:52:25,456 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,457 directory, all directories are treated like packages. 2025-09-09T02:52:25,457 ******************************************************************************** 2025-09-09T02:52:25,457 !! 2025-09-09T02:52:25,457 check.warn(importable) 2025-09-09T02:52:25,457 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,457 !! 2025-09-09T02:52:25,457 ******************************************************************************** 2025-09-09T02:52:25,457 ############################ 2025-09-09T02:52:25,457 # Package would be ignored # 2025-09-09T02:52:25,458 ############################ 2025-09-09T02:52:25,458 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-09T02:52:25,458 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,458 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,458 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-09T02:52:25,458 to the `packages` configuration field. 2025-09-09T02:52:25,458 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,458 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,459 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,459 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-09T02:52:25,459 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-09T02:52:25,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,459 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,459 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,460 even if it does not contain any `.py` files. 2025-09-09T02:52:25,460 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,460 directory, all directories are treated like packages. 2025-09-09T02:52:25,460 ******************************************************************************** 2025-09-09T02:52:25,460 !! 2025-09-09T02:52:25,460 check.warn(importable) 2025-09-09T02:52:25,460 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,461 !! 2025-09-09T02:52:25,461 ******************************************************************************** 2025-09-09T02:52:25,461 ############################ 2025-09-09T02:52:25,461 # Package would be ignored # 2025-09-09T02:52:25,461 ############################ 2025-09-09T02:52:25,461 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-09T02:52:25,461 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,461 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,461 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-09T02:52:25,461 to the `packages` configuration field. 2025-09-09T02:52:25,462 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,462 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,462 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,462 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-09T02:52:25,462 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-09T02:52:25,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,463 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,463 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,463 even if it does not contain any `.py` files. 2025-09-09T02:52:25,463 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,463 directory, all directories are treated like packages. 2025-09-09T02:52:25,464 ******************************************************************************** 2025-09-09T02:52:25,464 !! 2025-09-09T02:52:25,464 check.warn(importable) 2025-09-09T02:52:25,464 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,464 !! 2025-09-09T02:52:25,464 ******************************************************************************** 2025-09-09T02:52:25,464 ############################ 2025-09-09T02:52:25,464 # Package would be ignored # 2025-09-09T02:52:25,464 ############################ 2025-09-09T02:52:25,465 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-09T02:52:25,465 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,465 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,465 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-09T02:52:25,465 to the `packages` configuration field. 2025-09-09T02:52:25,465 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,465 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,465 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,466 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-09T02:52:25,466 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-09T02:52:25,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,466 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,466 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,467 even if it does not contain any `.py` files. 2025-09-09T02:52:25,467 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,467 directory, all directories are treated like packages. 2025-09-09T02:52:25,467 ******************************************************************************** 2025-09-09T02:52:25,467 !! 2025-09-09T02:52:25,467 check.warn(importable) 2025-09-09T02:52:25,467 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-09T02:52:25,467 !! 2025-09-09T02:52:25,468 ******************************************************************************** 2025-09-09T02:52:25,468 ############################ 2025-09-09T02:52:25,468 # Package would be ignored # 2025-09-09T02:52:25,468 ############################ 2025-09-09T02:52:25,468 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-09T02:52:25,468 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,468 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,468 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-09T02:52:25,468 to the `packages` configuration field. 2025-09-09T02:52:25,469 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,469 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,469 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,469 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,469 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-09T02:52:25,469 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-09T02:52:25,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,470 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,470 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,470 even if it does not contain any `.py` files. 2025-09-09T02:52:25,470 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,471 directory, all directories are treated like packages. 2025-09-09T02:52:25,471 ******************************************************************************** 2025-09-09T02:52:25,471 !! 2025-09-09T02:52:25,471 check.warn(importable) 2025-09-09T02:52:25,471 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,471 !! 2025-09-09T02:52:25,471 ******************************************************************************** 2025-09-09T02:52:25,471 ############################ 2025-09-09T02:52:25,471 # Package would be ignored # 2025-09-09T02:52:25,472 ############################ 2025-09-09T02:52:25,472 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-09T02:52:25,472 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,472 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,472 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-09T02:52:25,472 to the `packages` configuration field. 2025-09-09T02:52:25,472 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,472 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,473 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,473 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,473 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-09T02:52:25,473 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-09T02:52:25,473 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,473 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,473 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,474 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,474 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,474 even if it does not contain any `.py` files. 2025-09-09T02:52:25,474 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,474 directory, all directories are treated like packages. 2025-09-09T02:52:25,474 ******************************************************************************** 2025-09-09T02:52:25,474 !! 2025-09-09T02:52:25,475 check.warn(importable) 2025-09-09T02:52:25,475 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,475 !! 2025-09-09T02:52:25,475 ******************************************************************************** 2025-09-09T02:52:25,475 ############################ 2025-09-09T02:52:25,475 # Package would be ignored # 2025-09-09T02:52:25,475 ############################ 2025-09-09T02:52:25,475 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-09T02:52:25,475 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,475 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,476 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-09T02:52:25,476 to the `packages` configuration field. 2025-09-09T02:52:25,476 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,476 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,476 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,477 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-09T02:52:25,477 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-09T02:52:25,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,477 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,477 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,477 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,478 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,478 even if it does not contain any `.py` files. 2025-09-09T02:52:25,478 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,478 directory, all directories are treated like packages. 2025-09-09T02:52:25,478 ******************************************************************************** 2025-09-09T02:52:25,478 !! 2025-09-09T02:52:25,478 check.warn(importable) 2025-09-09T02:52:25,479 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,479 !! 2025-09-09T02:52:25,479 ******************************************************************************** 2025-09-09T02:52:25,479 ############################ 2025-09-09T02:52:25,479 # Package would be ignored # 2025-09-09T02:52:25,479 ############################ 2025-09-09T02:52:25,479 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,479 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,479 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,480 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-09T02:52:25,480 to the `packages` configuration field. 2025-09-09T02:52:25,480 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,480 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,480 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,480 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,481 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,481 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-09T02:52:25,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,481 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,481 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,481 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,482 even if it does not contain any `.py` files. 2025-09-09T02:52:25,482 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,482 directory, all directories are treated like packages. 2025-09-09T02:52:25,482 ******************************************************************************** 2025-09-09T02:52:25,482 !! 2025-09-09T02:52:25,482 check.warn(importable) 2025-09-09T02:52:25,482 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T02:52:25,482 !! 2025-09-09T02:52:25,482 ******************************************************************************** 2025-09-09T02:52:25,483 ############################ 2025-09-09T02:52:25,483 # Package would be ignored # 2025-09-09T02:52:25,483 ############################ 2025-09-09T02:52:25,483 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-09T02:52:25,483 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,483 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,483 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-09T02:52:25,483 to the `packages` configuration field. 2025-09-09T02:52:25,483 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,484 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,484 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,484 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,484 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-09T02:52:25,484 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-09T02:52:25,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,484 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,485 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,485 even if it does not contain any `.py` files. 2025-09-09T02:52:25,485 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,485 directory, all directories are treated like packages. 2025-09-09T02:52:25,485 ******************************************************************************** 2025-09-09T02:52:25,486 !! 2025-09-09T02:52:25,486 check.warn(importable) 2025-09-09T02:52:25,486 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T02:52:25,486 !! 2025-09-09T02:52:25,486 ******************************************************************************** 2025-09-09T02:52:25,486 ############################ 2025-09-09T02:52:25,486 # Package would be ignored # 2025-09-09T02:52:25,486 ############################ 2025-09-09T02:52:25,486 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-09T02:52:25,487 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,487 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,487 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-09T02:52:25,487 to the `packages` configuration field. 2025-09-09T02:52:25,487 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,487 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,487 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,487 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,488 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-09T02:52:25,488 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-09T02:52:25,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,488 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,488 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,489 even if it does not contain any `.py` files. 2025-09-09T02:52:25,489 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,489 directory, all directories are treated like packages. 2025-09-09T02:52:25,489 ******************************************************************************** 2025-09-09T02:52:25,489 !! 2025-09-09T02:52:25,489 check.warn(importable) 2025-09-09T02:52:25,489 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T02:52:25,490 !! 2025-09-09T02:52:25,490 ******************************************************************************** 2025-09-09T02:52:25,490 ############################ 2025-09-09T02:52:25,490 # Package would be ignored # 2025-09-09T02:52:25,490 ############################ 2025-09-09T02:52:25,490 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-09T02:52:25,490 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,490 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,491 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-09T02:52:25,491 to the `packages` configuration field. 2025-09-09T02:52:25,491 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,491 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,491 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,491 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-09T02:52:25,492 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-09T02:52:25,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,492 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,492 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,493 even if it does not contain any `.py` files. 2025-09-09T02:52:25,493 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,493 directory, all directories are treated like packages. 2025-09-09T02:52:25,493 ******************************************************************************** 2025-09-09T02:52:25,493 !! 2025-09-09T02:52:25,493 check.warn(importable) 2025-09-09T02:52:25,493 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T02:52:25,493 !! 2025-09-09T02:52:25,493 ******************************************************************************** 2025-09-09T02:52:25,493 ############################ 2025-09-09T02:52:25,494 # Package would be ignored # 2025-09-09T02:52:25,494 ############################ 2025-09-09T02:52:25,494 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-09T02:52:25,494 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,494 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,494 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-09T02:52:25,494 to the `packages` configuration field. 2025-09-09T02:52:25,494 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,494 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,495 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,495 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-09T02:52:25,495 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-09T02:52:25,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,495 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,495 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,495 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,496 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,496 even if it does not contain any `.py` files. 2025-09-09T02:52:25,496 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,496 directory, all directories are treated like packages. 2025-09-09T02:52:25,496 ******************************************************************************** 2025-09-09T02:52:25,496 !! 2025-09-09T02:52:25,496 check.warn(importable) 2025-09-09T02:52:25,497 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,497 !! 2025-09-09T02:52:25,497 ******************************************************************************** 2025-09-09T02:52:25,497 ############################ 2025-09-09T02:52:25,497 # Package would be ignored # 2025-09-09T02:52:25,497 ############################ 2025-09-09T02:52:25,497 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-09T02:52:25,497 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,497 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,497 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-09T02:52:25,498 to the `packages` configuration field. 2025-09-09T02:52:25,498 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,498 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,498 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,498 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-09T02:52:25,498 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-09T02:52:25,498 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,499 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,499 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,499 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,499 even if it does not contain any `.py` files. 2025-09-09T02:52:25,499 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,500 directory, all directories are treated like packages. 2025-09-09T02:52:25,500 ******************************************************************************** 2025-09-09T02:52:25,500 !! 2025-09-09T02:52:25,500 check.warn(importable) 2025-09-09T02:52:25,500 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,500 !! 2025-09-09T02:52:25,500 ******************************************************************************** 2025-09-09T02:52:25,500 ############################ 2025-09-09T02:52:25,500 # Package would be ignored # 2025-09-09T02:52:25,500 ############################ 2025-09-09T02:52:25,501 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,501 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,501 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,501 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-09T02:52:25,501 to the `packages` configuration field. 2025-09-09T02:52:25,501 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,501 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,501 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,502 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-09T02:52:25,502 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-09T02:52:25,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,502 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,502 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,502 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,503 even if it does not contain any `.py` files. 2025-09-09T02:52:25,503 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,503 directory, all directories are treated like packages. 2025-09-09T02:52:25,503 ******************************************************************************** 2025-09-09T02:52:25,503 !! 2025-09-09T02:52:25,503 check.warn(importable) 2025-09-09T02:52:25,503 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,504 !! 2025-09-09T02:52:25,504 ******************************************************************************** 2025-09-09T02:52:25,504 ############################ 2025-09-09T02:52:25,504 # Package would be ignored # 2025-09-09T02:52:25,504 ############################ 2025-09-09T02:52:25,504 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,504 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,504 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,504 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,504 to the `packages` configuration field. 2025-09-09T02:52:25,505 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,505 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,505 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,505 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,505 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,505 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-09T02:52:25,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,506 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,506 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,506 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,506 even if it does not contain any `.py` files. 2025-09-09T02:52:25,506 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,507 directory, all directories are treated like packages. 2025-09-09T02:52:25,507 ******************************************************************************** 2025-09-09T02:52:25,507 !! 2025-09-09T02:52:25,507 check.warn(importable) 2025-09-09T02:52:25,507 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,507 !! 2025-09-09T02:52:25,507 ******************************************************************************** 2025-09-09T02:52:25,507 ############################ 2025-09-09T02:52:25,507 # Package would be ignored # 2025-09-09T02:52:25,507 ############################ 2025-09-09T02:52:25,507 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-09T02:52:25,508 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,508 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,508 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-09T02:52:25,508 to the `packages` configuration field. 2025-09-09T02:52:25,508 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,508 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,508 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,509 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-09T02:52:25,509 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-09T02:52:25,509 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,509 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,509 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,510 even if it does not contain any `.py` files. 2025-09-09T02:52:25,510 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,510 directory, all directories are treated like packages. 2025-09-09T02:52:25,510 ******************************************************************************** 2025-09-09T02:52:25,510 !! 2025-09-09T02:52:25,510 check.warn(importable) 2025-09-09T02:52:25,510 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,510 !! 2025-09-09T02:52:25,511 ******************************************************************************** 2025-09-09T02:52:25,511 ############################ 2025-09-09T02:52:25,511 # Package would be ignored # 2025-09-09T02:52:25,511 ############################ 2025-09-09T02:52:25,511 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-09T02:52:25,511 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,511 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,511 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-09T02:52:25,511 to the `packages` configuration field. 2025-09-09T02:52:25,512 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,512 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,512 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,512 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-09T02:52:25,512 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-09T02:52:25,512 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,512 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,513 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,513 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,513 even if it does not contain any `.py` files. 2025-09-09T02:52:25,513 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,513 directory, all directories are treated like packages. 2025-09-09T02:52:25,513 ******************************************************************************** 2025-09-09T02:52:25,514 !! 2025-09-09T02:52:25,514 check.warn(importable) 2025-09-09T02:52:25,514 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,514 !! 2025-09-09T02:52:25,514 ******************************************************************************** 2025-09-09T02:52:25,514 ############################ 2025-09-09T02:52:25,514 # Package would be ignored # 2025-09-09T02:52:25,514 ############################ 2025-09-09T02:52:25,514 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,514 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,515 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,515 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-09T02:52:25,515 to the `packages` configuration field. 2025-09-09T02:52:25,515 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,515 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,515 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,515 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,516 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,516 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-09T02:52:25,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,516 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,516 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,517 even if it does not contain any `.py` files. 2025-09-09T02:52:25,517 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,517 directory, all directories are treated like packages. 2025-09-09T02:52:25,517 ******************************************************************************** 2025-09-09T02:52:25,517 !! 2025-09-09T02:52:25,517 check.warn(importable) 2025-09-09T02:52:25,517 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,517 !! 2025-09-09T02:52:25,518 ******************************************************************************** 2025-09-09T02:52:25,518 ############################ 2025-09-09T02:52:25,518 # Package would be ignored # 2025-09-09T02:52:25,518 ############################ 2025-09-09T02:52:25,518 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-09T02:52:25,518 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,518 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,518 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-09T02:52:25,518 to the `packages` configuration field. 2025-09-09T02:52:25,519 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,519 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,519 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,519 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,519 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-09T02:52:25,519 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-09T02:52:25,519 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,519 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,520 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,520 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,520 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,520 even if it does not contain any `.py` files. 2025-09-09T02:52:25,520 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,520 directory, all directories are treated like packages. 2025-09-09T02:52:25,520 ******************************************************************************** 2025-09-09T02:52:25,521 !! 2025-09-09T02:52:25,521 check.warn(importable) 2025-09-09T02:52:25,521 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,521 !! 2025-09-09T02:52:25,521 ******************************************************************************** 2025-09-09T02:52:25,521 ############################ 2025-09-09T02:52:25,521 # Package would be ignored # 2025-09-09T02:52:25,521 ############################ 2025-09-09T02:52:25,521 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-09T02:52:25,521 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,522 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,522 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-09T02:52:25,522 to the `packages` configuration field. 2025-09-09T02:52:25,522 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,522 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,522 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,522 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,523 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-09T02:52:25,523 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-09T02:52:25,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,523 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,523 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,523 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,524 even if it does not contain any `.py` files. 2025-09-09T02:52:25,524 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,524 directory, all directories are treated like packages. 2025-09-09T02:52:25,524 ******************************************************************************** 2025-09-09T02:52:25,524 !! 2025-09-09T02:52:25,524 check.warn(importable) 2025-09-09T02:52:25,524 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,524 !! 2025-09-09T02:52:25,524 ******************************************************************************** 2025-09-09T02:52:25,524 ############################ 2025-09-09T02:52:25,525 # Package would be ignored # 2025-09-09T02:52:25,525 ############################ 2025-09-09T02:52:25,525 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,525 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,525 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,525 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-09T02:52:25,525 to the `packages` configuration field. 2025-09-09T02:52:25,525 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,525 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,526 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,526 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,526 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-09T02:52:25,526 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,526 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,526 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,527 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,527 even if it does not contain any `.py` files. 2025-09-09T02:52:25,527 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,527 directory, all directories are treated like packages. 2025-09-09T02:52:25,527 ******************************************************************************** 2025-09-09T02:52:25,527 !! 2025-09-09T02:52:25,527 check.warn(importable) 2025-09-09T02:52:25,528 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T02:52:25,528 !! 2025-09-09T02:52:25,528 ******************************************************************************** 2025-09-09T02:52:25,528 ############################ 2025-09-09T02:52:25,528 # Package would be ignored # 2025-09-09T02:52:25,528 ############################ 2025-09-09T02:52:25,528 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-09T02:52:25,528 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,528 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,529 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-09T02:52:25,529 to the `packages` configuration field. 2025-09-09T02:52:25,529 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,529 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,529 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,530 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-09T02:52:25,530 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-09T02:52:25,530 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,530 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,530 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,530 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,531 even if it does not contain any `.py` files. 2025-09-09T02:52:25,531 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,531 directory, all directories are treated like packages. 2025-09-09T02:52:25,531 ******************************************************************************** 2025-09-09T02:52:25,531 !! 2025-09-09T02:52:25,531 check.warn(importable) 2025-09-09T02:52:25,531 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T02:52:25,531 !! 2025-09-09T02:52:25,531 ******************************************************************************** 2025-09-09T02:52:25,531 ############################ 2025-09-09T02:52:25,532 # Package would be ignored # 2025-09-09T02:52:25,532 ############################ 2025-09-09T02:52:25,532 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-09T02:52:25,532 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,532 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,532 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-09T02:52:25,532 to the `packages` configuration field. 2025-09-09T02:52:25,532 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,532 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,533 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,533 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,533 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-09T02:52:25,533 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-09T02:52:25,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,533 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,533 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,534 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,534 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,534 even if it does not contain any `.py` files. 2025-09-09T02:52:25,534 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,534 directory, all directories are treated like packages. 2025-09-09T02:52:25,534 ******************************************************************************** 2025-09-09T02:52:25,534 !! 2025-09-09T02:52:25,534 check.warn(importable) 2025-09-09T02:52:25,534 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T02:52:25,535 !! 2025-09-09T02:52:25,535 ******************************************************************************** 2025-09-09T02:52:25,535 ############################ 2025-09-09T02:52:25,535 # Package would be ignored # 2025-09-09T02:52:25,535 ############################ 2025-09-09T02:52:25,535 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-09T02:52:25,535 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,535 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,535 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-09T02:52:25,535 to the `packages` configuration field. 2025-09-09T02:52:25,536 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,536 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,536 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,536 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-09T02:52:25,536 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-09T02:52:25,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,537 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,537 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,537 even if it does not contain any `.py` files. 2025-09-09T02:52:25,537 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,537 directory, all directories are treated like packages. 2025-09-09T02:52:25,537 ******************************************************************************** 2025-09-09T02:52:25,538 !! 2025-09-09T02:52:25,538 check.warn(importable) 2025-09-09T02:52:25,538 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T02:52:25,538 !! 2025-09-09T02:52:25,538 ******************************************************************************** 2025-09-09T02:52:25,538 ############################ 2025-09-09T02:52:25,538 # Package would be ignored # 2025-09-09T02:52:25,538 ############################ 2025-09-09T02:52:25,538 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-09T02:52:25,538 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,539 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,539 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-09T02:52:25,539 to the `packages` configuration field. 2025-09-09T02:52:25,539 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,539 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,539 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,540 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-09T02:52:25,540 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-09T02:52:25,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,540 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,540 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,541 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,541 even if it does not contain any `.py` files. 2025-09-09T02:52:25,541 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,541 directory, all directories are treated like packages. 2025-09-09T02:52:25,541 ******************************************************************************** 2025-09-09T02:52:25,541 !! 2025-09-09T02:52:25,541 check.warn(importable) 2025-09-09T02:52:25,541 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,541 !! 2025-09-09T02:52:25,542 ******************************************************************************** 2025-09-09T02:52:25,542 ############################ 2025-09-09T02:52:25,542 # Package would be ignored # 2025-09-09T02:52:25,542 ############################ 2025-09-09T02:52:25,542 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-09T02:52:25,542 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,542 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,542 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-09T02:52:25,542 to the `packages` configuration field. 2025-09-09T02:52:25,543 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,543 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,543 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,543 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,543 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-09T02:52:25,543 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-09T02:52:25,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,544 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,544 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,544 even if it does not contain any `.py` files. 2025-09-09T02:52:25,544 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,544 directory, all directories are treated like packages. 2025-09-09T02:52:25,544 ******************************************************************************** 2025-09-09T02:52:25,545 !! 2025-09-09T02:52:25,545 check.warn(importable) 2025-09-09T02:52:25,545 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,545 !! 2025-09-09T02:52:25,545 ******************************************************************************** 2025-09-09T02:52:25,545 ############################ 2025-09-09T02:52:25,545 # Package would be ignored # 2025-09-09T02:52:25,545 ############################ 2025-09-09T02:52:25,545 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-09T02:52:25,545 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,546 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,546 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-09T02:52:25,546 to the `packages` configuration field. 2025-09-09T02:52:25,546 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,546 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,546 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,547 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-09T02:52:25,547 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-09T02:52:25,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,547 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,547 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,547 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,548 even if it does not contain any `.py` files. 2025-09-09T02:52:25,548 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,548 directory, all directories are treated like packages. 2025-09-09T02:52:25,548 ******************************************************************************** 2025-09-09T02:52:25,548 !! 2025-09-09T02:52:25,548 check.warn(importable) 2025-09-09T02:52:25,548 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,548 !! 2025-09-09T02:52:25,548 ******************************************************************************** 2025-09-09T02:52:25,548 ############################ 2025-09-09T02:52:25,549 # Package would be ignored # 2025-09-09T02:52:25,549 ############################ 2025-09-09T02:52:25,549 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,549 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,549 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,549 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-09T02:52:25,549 to the `packages` configuration field. 2025-09-09T02:52:25,549 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,549 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,550 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,550 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,550 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-09T02:52:25,550 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,550 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,550 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,551 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,551 even if it does not contain any `.py` files. 2025-09-09T02:52:25,551 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,551 directory, all directories are treated like packages. 2025-09-09T02:52:25,551 ******************************************************************************** 2025-09-09T02:52:25,551 !! 2025-09-09T02:52:25,551 check.warn(importable) 2025-09-09T02:52:25,552 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,552 !! 2025-09-09T02:52:25,552 ******************************************************************************** 2025-09-09T02:52:25,552 ############################ 2025-09-09T02:52:25,552 # Package would be ignored # 2025-09-09T02:52:25,552 ############################ 2025-09-09T02:52:25,552 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-09T02:52:25,552 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,552 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-09T02:52:25,553 to the `packages` configuration field. 2025-09-09T02:52:25,553 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,553 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,553 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,553 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-09T02:52:25,554 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-09T02:52:25,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,554 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,554 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,554 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,554 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,554 even if it does not contain any `.py` files. 2025-09-09T02:52:25,555 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,555 directory, all directories are treated like packages. 2025-09-09T02:52:25,555 ******************************************************************************** 2025-09-09T02:52:25,555 !! 2025-09-09T02:52:25,555 check.warn(importable) 2025-09-09T02:52:25,555 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,555 !! 2025-09-09T02:52:25,555 ******************************************************************************** 2025-09-09T02:52:25,555 ############################ 2025-09-09T02:52:25,556 # Package would be ignored # 2025-09-09T02:52:25,556 ############################ 2025-09-09T02:52:25,556 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,556 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,556 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,556 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-09T02:52:25,556 to the `packages` configuration field. 2025-09-09T02:52:25,556 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,556 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,557 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,557 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-09T02:52:25,557 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-09T02:52:25,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,557 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,557 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,558 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,558 even if it does not contain any `.py` files. 2025-09-09T02:52:25,558 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,558 directory, all directories are treated like packages. 2025-09-09T02:52:25,558 ******************************************************************************** 2025-09-09T02:52:25,558 !! 2025-09-09T02:52:25,558 check.warn(importable) 2025-09-09T02:52:25,559 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,559 !! 2025-09-09T02:52:25,559 ******************************************************************************** 2025-09-09T02:52:25,559 ############################ 2025-09-09T02:52:25,559 # Package would be ignored # 2025-09-09T02:52:25,559 ############################ 2025-09-09T02:52:25,559 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,559 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,559 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,559 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,560 to the `packages` configuration field. 2025-09-09T02:52:25,560 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,560 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,560 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,560 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,560 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-09T02:52:25,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,561 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,561 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,561 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,561 even if it does not contain any `.py` files. 2025-09-09T02:52:25,561 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,562 directory, all directories are treated like packages. 2025-09-09T02:52:25,562 ******************************************************************************** 2025-09-09T02:52:25,562 !! 2025-09-09T02:52:25,562 check.warn(importable) 2025-09-09T02:52:25,562 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,562 !! 2025-09-09T02:52:25,562 ******************************************************************************** 2025-09-09T02:52:25,562 ############################ 2025-09-09T02:52:25,562 # Package would be ignored # 2025-09-09T02:52:25,562 ############################ 2025-09-09T02:52:25,563 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-09T02:52:25,563 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,563 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,563 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-09T02:52:25,563 to the `packages` configuration field. 2025-09-09T02:52:25,563 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,563 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,563 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,564 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,564 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-09T02:52:25,564 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-09T02:52:25,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,564 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,564 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,565 even if it does not contain any `.py` files. 2025-09-09T02:52:25,565 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,565 directory, all directories are treated like packages. 2025-09-09T02:52:25,565 ******************************************************************************** 2025-09-09T02:52:25,565 !! 2025-09-09T02:52:25,565 check.warn(importable) 2025-09-09T02:52:25,565 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,565 !! 2025-09-09T02:52:25,566 ******************************************************************************** 2025-09-09T02:52:25,566 ############################ 2025-09-09T02:52:25,566 # Package would be ignored # 2025-09-09T02:52:25,566 ############################ 2025-09-09T02:52:25,566 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-09T02:52:25,566 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,566 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,566 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-09T02:52:25,566 to the `packages` configuration field. 2025-09-09T02:52:25,567 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,567 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,567 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,567 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-09T02:52:25,567 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-09T02:52:25,567 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,567 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,568 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,568 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,568 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,568 even if it does not contain any `.py` files. 2025-09-09T02:52:25,568 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,568 directory, all directories are treated like packages. 2025-09-09T02:52:25,568 ******************************************************************************** 2025-09-09T02:52:25,569 !! 2025-09-09T02:52:25,569 check.warn(importable) 2025-09-09T02:52:25,569 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,569 !! 2025-09-09T02:52:25,569 ******************************************************************************** 2025-09-09T02:52:25,569 ############################ 2025-09-09T02:52:25,569 # Package would be ignored # 2025-09-09T02:52:25,569 ############################ 2025-09-09T02:52:25,569 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,570 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,570 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,570 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-09T02:52:25,570 to the `packages` configuration field. 2025-09-09T02:52:25,570 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,570 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,570 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,571 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,571 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-09T02:52:25,571 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,571 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,571 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,572 even if it does not contain any `.py` files. 2025-09-09T02:52:25,572 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,572 directory, all directories are treated like packages. 2025-09-09T02:52:25,572 ******************************************************************************** 2025-09-09T02:52:25,572 !! 2025-09-09T02:52:25,572 check.warn(importable) 2025-09-09T02:52:25,572 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,572 !! 2025-09-09T02:52:25,572 ******************************************************************************** 2025-09-09T02:52:25,573 ############################ 2025-09-09T02:52:25,573 # Package would be ignored # 2025-09-09T02:52:25,573 ############################ 2025-09-09T02:52:25,573 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-09T02:52:25,573 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,573 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,573 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-09T02:52:25,573 to the `packages` configuration field. 2025-09-09T02:52:25,573 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,574 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,574 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,574 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-09T02:52:25,574 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-09T02:52:25,574 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,574 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,575 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,575 even if it does not contain any `.py` files. 2025-09-09T02:52:25,575 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,575 directory, all directories are treated like packages. 2025-09-09T02:52:25,575 ******************************************************************************** 2025-09-09T02:52:25,575 !! 2025-09-09T02:52:25,575 check.warn(importable) 2025-09-09T02:52:25,576 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,576 !! 2025-09-09T02:52:25,576 ******************************************************************************** 2025-09-09T02:52:25,576 ############################ 2025-09-09T02:52:25,576 # Package would be ignored # 2025-09-09T02:52:25,576 ############################ 2025-09-09T02:52:25,576 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-09T02:52:25,576 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,576 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,576 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-09T02:52:25,577 to the `packages` configuration field. 2025-09-09T02:52:25,577 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,577 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,577 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,577 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-09T02:52:25,577 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-09T02:52:25,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,578 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,578 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,579 even if it does not contain any `.py` files. 2025-09-09T02:52:25,579 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,579 directory, all directories are treated like packages. 2025-09-09T02:52:25,579 ******************************************************************************** 2025-09-09T02:52:25,579 !! 2025-09-09T02:52:25,579 check.warn(importable) 2025-09-09T02:52:25,579 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,579 !! 2025-09-09T02:52:25,579 ******************************************************************************** 2025-09-09T02:52:25,579 ############################ 2025-09-09T02:52:25,580 # Package would be ignored # 2025-09-09T02:52:25,580 ############################ 2025-09-09T02:52:25,580 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,580 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,580 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,580 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-09T02:52:25,580 to the `packages` configuration field. 2025-09-09T02:52:25,580 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,581 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,581 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,581 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,581 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-09T02:52:25,581 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,581 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,581 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,582 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,582 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,582 even if it does not contain any `.py` files. 2025-09-09T02:52:25,582 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,582 directory, all directories are treated like packages. 2025-09-09T02:52:25,582 ******************************************************************************** 2025-09-09T02:52:25,582 !! 2025-09-09T02:52:25,583 check.warn(importable) 2025-09-09T02:52:25,583 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T02:52:25,583 !! 2025-09-09T02:52:25,583 ******************************************************************************** 2025-09-09T02:52:25,583 ############################ 2025-09-09T02:52:25,583 # Package would be ignored # 2025-09-09T02:52:25,583 ############################ 2025-09-09T02:52:25,583 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-09T02:52:25,583 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,583 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,584 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-09T02:52:25,584 to the `packages` configuration field. 2025-09-09T02:52:25,584 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,584 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,584 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,584 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,584 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,584 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-09T02:52:25,585 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-09T02:52:25,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,585 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,585 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,585 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,585 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,585 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,585 even if it does not contain any `.py` files. 2025-09-09T02:52:25,585 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,586 directory, all directories are treated like packages. 2025-09-09T02:52:25,586 ******************************************************************************** 2025-09-09T02:52:25,586 !! 2025-09-09T02:52:25,586 check.warn(importable) 2025-09-09T02:52:25,586 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T02:52:25,586 !! 2025-09-09T02:52:25,586 ******************************************************************************** 2025-09-09T02:52:25,586 ############################ 2025-09-09T02:52:25,586 # Package would be ignored # 2025-09-09T02:52:25,586 ############################ 2025-09-09T02:52:25,587 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-09T02:52:25,587 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,587 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,587 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-09T02:52:25,587 to the `packages` configuration field. 2025-09-09T02:52:25,587 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,587 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,587 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,588 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-09T02:52:25,588 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-09T02:52:25,588 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,588 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,588 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,589 even if it does not contain any `.py` files. 2025-09-09T02:52:25,589 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,589 directory, all directories are treated like packages. 2025-09-09T02:52:25,589 ******************************************************************************** 2025-09-09T02:52:25,589 !! 2025-09-09T02:52:25,589 check.warn(importable) 2025-09-09T02:52:25,589 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T02:52:25,589 !! 2025-09-09T02:52:25,590 ******************************************************************************** 2025-09-09T02:52:25,590 ############################ 2025-09-09T02:52:25,590 # Package would be ignored # 2025-09-09T02:52:25,590 ############################ 2025-09-09T02:52:25,590 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-09T02:52:25,590 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,590 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,590 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-09T02:52:25,590 to the `packages` configuration field. 2025-09-09T02:52:25,591 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,591 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,591 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,591 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-09T02:52:25,591 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-09T02:52:25,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,592 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,592 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,592 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,592 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,592 even if it does not contain any `.py` files. 2025-09-09T02:52:25,592 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,593 directory, all directories are treated like packages. 2025-09-09T02:52:25,593 ******************************************************************************** 2025-09-09T02:52:25,593 !! 2025-09-09T02:52:25,593 check.warn(importable) 2025-09-09T02:52:25,593 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T02:52:25,593 !! 2025-09-09T02:52:25,593 ******************************************************************************** 2025-09-09T02:52:25,593 ############################ 2025-09-09T02:52:25,593 # Package would be ignored # 2025-09-09T02:52:25,593 ############################ 2025-09-09T02:52:25,594 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-09T02:52:25,594 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,594 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,594 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-09T02:52:25,594 to the `packages` configuration field. 2025-09-09T02:52:25,594 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,594 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,594 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,595 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-09T02:52:25,595 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-09T02:52:25,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,595 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,595 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,595 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,595 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,596 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,596 even if it does not contain any `.py` files. 2025-09-09T02:52:25,596 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,596 directory, all directories are treated like packages. 2025-09-09T02:52:25,596 ******************************************************************************** 2025-09-09T02:52:25,596 !! 2025-09-09T02:52:25,596 check.warn(importable) 2025-09-09T02:52:25,596 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,596 !! 2025-09-09T02:52:25,597 ******************************************************************************** 2025-09-09T02:52:25,597 ############################ 2025-09-09T02:52:25,597 # Package would be ignored # 2025-09-09T02:52:25,597 ############################ 2025-09-09T02:52:25,597 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-09T02:52:25,597 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,597 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,597 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-09T02:52:25,597 to the `packages` configuration field. 2025-09-09T02:52:25,597 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,598 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,598 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,598 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,598 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-09T02:52:25,598 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-09T02:52:25,598 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,598 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,599 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,599 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,599 even if it does not contain any `.py` files. 2025-09-09T02:52:25,599 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,599 directory, all directories are treated like packages. 2025-09-09T02:52:25,599 ******************************************************************************** 2025-09-09T02:52:25,600 !! 2025-09-09T02:52:25,600 check.warn(importable) 2025-09-09T02:52:25,600 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,600 !! 2025-09-09T02:52:25,600 ******************************************************************************** 2025-09-09T02:52:25,600 ############################ 2025-09-09T02:52:25,600 # Package would be ignored # 2025-09-09T02:52:25,600 ############################ 2025-09-09T02:52:25,600 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,600 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,601 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,601 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-09T02:52:25,601 to the `packages` configuration field. 2025-09-09T02:52:25,601 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,601 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,601 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,601 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,601 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-09T02:52:25,602 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-09T02:52:25,602 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,602 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,602 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,602 even if it does not contain any `.py` files. 2025-09-09T02:52:25,603 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,603 directory, all directories are treated like packages. 2025-09-09T02:52:25,603 ******************************************************************************** 2025-09-09T02:52:25,603 !! 2025-09-09T02:52:25,603 check.warn(importable) 2025-09-09T02:52:25,603 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,603 !! 2025-09-09T02:52:25,603 ******************************************************************************** 2025-09-09T02:52:25,603 ############################ 2025-09-09T02:52:25,604 # Package would be ignored # 2025-09-09T02:52:25,604 ############################ 2025-09-09T02:52:25,604 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,604 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,604 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,604 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,604 to the `packages` configuration field. 2025-09-09T02:52:25,604 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,605 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,605 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,605 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,605 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-09T02:52:25,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,605 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,606 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,606 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,606 even if it does not contain any `.py` files. 2025-09-09T02:52:25,606 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,606 directory, all directories are treated like packages. 2025-09-09T02:52:25,606 ******************************************************************************** 2025-09-09T02:52:25,606 !! 2025-09-09T02:52:25,607 check.warn(importable) 2025-09-09T02:52:25,607 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,607 !! 2025-09-09T02:52:25,607 ******************************************************************************** 2025-09-09T02:52:25,607 ############################ 2025-09-09T02:52:25,607 # Package would be ignored # 2025-09-09T02:52:25,607 ############################ 2025-09-09T02:52:25,607 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-09T02:52:25,607 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,607 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,607 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-09T02:52:25,608 to the `packages` configuration field. 2025-09-09T02:52:25,608 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,608 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,608 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,608 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-09T02:52:25,608 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-09T02:52:25,609 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,609 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,609 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,609 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,609 even if it does not contain any `.py` files. 2025-09-09T02:52:25,609 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,610 directory, all directories are treated like packages. 2025-09-09T02:52:25,610 ******************************************************************************** 2025-09-09T02:52:25,610 !! 2025-09-09T02:52:25,610 check.warn(importable) 2025-09-09T02:52:25,610 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,610 !! 2025-09-09T02:52:25,610 ******************************************************************************** 2025-09-09T02:52:25,610 ############################ 2025-09-09T02:52:25,610 # Package would be ignored # 2025-09-09T02:52:25,610 ############################ 2025-09-09T02:52:25,611 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-09T02:52:25,611 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,611 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,611 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-09T02:52:25,611 to the `packages` configuration field. 2025-09-09T02:52:25,611 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,611 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,611 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,612 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,612 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-09T02:52:25,612 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-09T02:52:25,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,612 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,612 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,613 even if it does not contain any `.py` files. 2025-09-09T02:52:25,613 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,613 directory, all directories are treated like packages. 2025-09-09T02:52:25,613 ******************************************************************************** 2025-09-09T02:52:25,613 !! 2025-09-09T02:52:25,613 check.warn(importable) 2025-09-09T02:52:25,613 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,613 !! 2025-09-09T02:52:25,614 ******************************************************************************** 2025-09-09T02:52:25,614 ############################ 2025-09-09T02:52:25,614 # Package would be ignored # 2025-09-09T02:52:25,614 ############################ 2025-09-09T02:52:25,614 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,614 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,614 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,614 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-09T02:52:25,614 to the `packages` configuration field. 2025-09-09T02:52:25,614 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,615 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,615 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,615 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,615 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-09T02:52:25,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,615 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,616 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,616 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,616 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,616 even if it does not contain any `.py` files. 2025-09-09T02:52:25,616 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,616 directory, all directories are treated like packages. 2025-09-09T02:52:25,617 ******************************************************************************** 2025-09-09T02:52:25,617 !! 2025-09-09T02:52:25,617 check.warn(importable) 2025-09-09T02:52:25,617 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,617 !! 2025-09-09T02:52:25,617 ******************************************************************************** 2025-09-09T02:52:25,617 ############################ 2025-09-09T02:52:25,617 # Package would be ignored # 2025-09-09T02:52:25,617 ############################ 2025-09-09T02:52:25,618 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-09T02:52:25,618 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,618 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,618 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-09T02:52:25,618 to the `packages` configuration field. 2025-09-09T02:52:25,618 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,618 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,618 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,619 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-09T02:52:25,619 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-09T02:52:25,619 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,619 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,619 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,619 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,620 even if it does not contain any `.py` files. 2025-09-09T02:52:25,620 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,620 directory, all directories are treated like packages. 2025-09-09T02:52:25,620 ******************************************************************************** 2025-09-09T02:52:25,620 !! 2025-09-09T02:52:25,620 check.warn(importable) 2025-09-09T02:52:25,620 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,620 !! 2025-09-09T02:52:25,621 ******************************************************************************** 2025-09-09T02:52:25,621 ############################ 2025-09-09T02:52:25,621 # Package would be ignored # 2025-09-09T02:52:25,621 ############################ 2025-09-09T02:52:25,621 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-09T02:52:25,621 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,621 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,621 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-09T02:52:25,621 to the `packages` configuration field. 2025-09-09T02:52:25,622 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,622 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,622 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,622 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,622 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-09T02:52:25,622 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-09T02:52:25,622 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,623 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,623 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,623 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,623 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,623 even if it does not contain any `.py` files. 2025-09-09T02:52:25,623 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,623 directory, all directories are treated like packages. 2025-09-09T02:52:25,623 ******************************************************************************** 2025-09-09T02:52:25,624 !! 2025-09-09T02:52:25,624 check.warn(importable) 2025-09-09T02:52:25,624 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,624 !! 2025-09-09T02:52:25,624 ******************************************************************************** 2025-09-09T02:52:25,624 ############################ 2025-09-09T02:52:25,624 # Package would be ignored # 2025-09-09T02:52:25,624 ############################ 2025-09-09T02:52:25,624 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,624 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,625 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,625 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-09T02:52:25,625 to the `packages` configuration field. 2025-09-09T02:52:25,625 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,625 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,625 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,625 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,625 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,626 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,626 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-09T02:52:25,626 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,626 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,626 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,626 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,626 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,627 even if it does not contain any `.py` files. 2025-09-09T02:52:25,627 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,627 directory, all directories are treated like packages. 2025-09-09T02:52:25,627 ******************************************************************************** 2025-09-09T02:52:25,627 !! 2025-09-09T02:52:25,627 check.warn(importable) 2025-09-09T02:52:25,627 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,627 !! 2025-09-09T02:52:25,627 ******************************************************************************** 2025-09-09T02:52:25,627 ############################ 2025-09-09T02:52:25,628 # Package would be ignored # 2025-09-09T02:52:25,628 ############################ 2025-09-09T02:52:25,628 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-09T02:52:25,628 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,628 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,628 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-09T02:52:25,628 to the `packages` configuration field. 2025-09-09T02:52:25,628 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,629 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,629 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,629 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-09T02:52:25,629 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-09T02:52:25,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,630 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,630 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,630 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,630 even if it does not contain any `.py` files. 2025-09-09T02:52:25,630 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,630 directory, all directories are treated like packages. 2025-09-09T02:52:25,630 ******************************************************************************** 2025-09-09T02:52:25,631 !! 2025-09-09T02:52:25,631 check.warn(importable) 2025-09-09T02:52:25,631 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,631 !! 2025-09-09T02:52:25,631 ******************************************************************************** 2025-09-09T02:52:25,631 ############################ 2025-09-09T02:52:25,631 # Package would be ignored # 2025-09-09T02:52:25,631 ############################ 2025-09-09T02:52:25,631 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-09T02:52:25,631 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,632 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,632 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-09T02:52:25,632 to the `packages` configuration field. 2025-09-09T02:52:25,632 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,632 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,632 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,633 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-09T02:52:25,633 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-09T02:52:25,633 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,633 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,633 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,633 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,634 even if it does not contain any `.py` files. 2025-09-09T02:52:25,634 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,634 directory, all directories are treated like packages. 2025-09-09T02:52:25,634 ******************************************************************************** 2025-09-09T02:52:25,634 !! 2025-09-09T02:52:25,634 check.warn(importable) 2025-09-09T02:52:25,634 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,634 !! 2025-09-09T02:52:25,634 ******************************************************************************** 2025-09-09T02:52:25,634 ############################ 2025-09-09T02:52:25,635 # Package would be ignored # 2025-09-09T02:52:25,635 ############################ 2025-09-09T02:52:25,635 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,635 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,635 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,635 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-09T02:52:25,635 to the `packages` configuration field. 2025-09-09T02:52:25,635 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,635 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,636 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,636 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,636 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-09T02:52:25,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,636 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,636 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,636 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,637 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,637 even if it does not contain any `.py` files. 2025-09-09T02:52:25,637 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,637 directory, all directories are treated like packages. 2025-09-09T02:52:25,637 ******************************************************************************** 2025-09-09T02:52:25,637 !! 2025-09-09T02:52:25,637 check.warn(importable) 2025-09-09T02:52:25,637 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,638 !! 2025-09-09T02:52:25,638 ******************************************************************************** 2025-09-09T02:52:25,638 ############################ 2025-09-09T02:52:25,638 # Package would be ignored # 2025-09-09T02:52:25,638 ############################ 2025-09-09T02:52:25,638 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-09T02:52:25,638 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,638 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,638 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-09T02:52:25,638 to the `packages` configuration field. 2025-09-09T02:52:25,639 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,639 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,639 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,639 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,639 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,639 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-09T02:52:25,639 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-09T02:52:25,640 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,640 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,640 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,640 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,640 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,640 even if it does not contain any `.py` files. 2025-09-09T02:52:25,640 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,641 directory, all directories are treated like packages. 2025-09-09T02:52:25,641 ******************************************************************************** 2025-09-09T02:52:25,641 !! 2025-09-09T02:52:25,641 check.warn(importable) 2025-09-09T02:52:25,641 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,641 !! 2025-09-09T02:52:25,641 ******************************************************************************** 2025-09-09T02:52:25,641 ############################ 2025-09-09T02:52:25,641 # Package would be ignored # 2025-09-09T02:52:25,642 ############################ 2025-09-09T02:52:25,642 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-09T02:52:25,642 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,642 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,642 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-09T02:52:25,642 to the `packages` configuration field. 2025-09-09T02:52:25,642 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,642 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,642 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,643 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,643 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-09T02:52:25,643 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-09T02:52:25,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,643 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,643 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,643 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,644 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,644 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,644 even if it does not contain any `.py` files. 2025-09-09T02:52:25,644 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,644 directory, all directories are treated like packages. 2025-09-09T02:52:25,644 ******************************************************************************** 2025-09-09T02:52:25,644 !! 2025-09-09T02:52:25,644 check.warn(importable) 2025-09-09T02:52:25,645 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,645 !! 2025-09-09T02:52:25,645 ******************************************************************************** 2025-09-09T02:52:25,645 ############################ 2025-09-09T02:52:25,645 # Package would be ignored # 2025-09-09T02:52:25,645 ############################ 2025-09-09T02:52:25,645 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,645 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,645 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,645 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-09T02:52:25,646 to the `packages` configuration field. 2025-09-09T02:52:25,646 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,646 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,646 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,646 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,646 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,646 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,646 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-09T02:52:25,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,647 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,647 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,647 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,647 even if it does not contain any `.py` files. 2025-09-09T02:52:25,647 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,648 directory, all directories are treated like packages. 2025-09-09T02:52:25,648 ******************************************************************************** 2025-09-09T02:52:25,648 !! 2025-09-09T02:52:25,648 check.warn(importable) 2025-09-09T02:52:25,648 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,648 !! 2025-09-09T02:52:25,648 ******************************************************************************** 2025-09-09T02:52:25,648 ############################ 2025-09-09T02:52:25,648 # Package would be ignored # 2025-09-09T02:52:25,648 ############################ 2025-09-09T02:52:25,649 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-09T02:52:25,649 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,649 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,649 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-09T02:52:25,649 to the `packages` configuration field. 2025-09-09T02:52:25,649 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,649 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,649 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,650 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,650 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-09T02:52:25,650 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-09T02:52:25,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,650 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,650 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,650 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,651 even if it does not contain any `.py` files. 2025-09-09T02:52:25,651 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,651 directory, all directories are treated like packages. 2025-09-09T02:52:25,651 ******************************************************************************** 2025-09-09T02:52:25,651 !! 2025-09-09T02:52:25,651 check.warn(importable) 2025-09-09T02:52:25,651 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,651 !! 2025-09-09T02:52:25,652 ******************************************************************************** 2025-09-09T02:52:25,652 ############################ 2025-09-09T02:52:25,652 # Package would be ignored # 2025-09-09T02:52:25,652 ############################ 2025-09-09T02:52:25,652 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,652 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,652 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,652 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-09T02:52:25,652 to the `packages` configuration field. 2025-09-09T02:52:25,652 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,653 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,653 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,653 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,653 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-09T02:52:25,653 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-09T02:52:25,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,654 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,654 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,654 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,654 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,654 even if it does not contain any `.py` files. 2025-09-09T02:52:25,654 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,654 directory, all directories are treated like packages. 2025-09-09T02:52:25,654 ******************************************************************************** 2025-09-09T02:52:25,655 !! 2025-09-09T02:52:25,655 check.warn(importable) 2025-09-09T02:52:25,655 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,655 !! 2025-09-09T02:52:25,655 ******************************************************************************** 2025-09-09T02:52:25,655 ############################ 2025-09-09T02:52:25,655 # Package would be ignored # 2025-09-09T02:52:25,655 ############################ 2025-09-09T02:52:25,655 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,656 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,656 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,656 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,656 to the `packages` configuration field. 2025-09-09T02:52:25,656 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,656 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,656 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,657 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,657 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,657 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-09T02:52:25,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,657 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,657 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,658 even if it does not contain any `.py` files. 2025-09-09T02:52:25,658 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,658 directory, all directories are treated like packages. 2025-09-09T02:52:25,658 ******************************************************************************** 2025-09-09T02:52:25,658 !! 2025-09-09T02:52:25,658 check.warn(importable) 2025-09-09T02:52:25,658 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,658 !! 2025-09-09T02:52:25,659 ******************************************************************************** 2025-09-09T02:52:25,659 ############################ 2025-09-09T02:52:25,659 # Package would be ignored # 2025-09-09T02:52:25,659 ############################ 2025-09-09T02:52:25,659 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-09T02:52:25,659 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,659 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,659 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-09T02:52:25,659 to the `packages` configuration field. 2025-09-09T02:52:25,660 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,660 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,660 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,660 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,660 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-09T02:52:25,660 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-09T02:52:25,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,661 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,661 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,661 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,661 even if it does not contain any `.py` files. 2025-09-09T02:52:25,661 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,661 directory, all directories are treated like packages. 2025-09-09T02:52:25,662 ******************************************************************************** 2025-09-09T02:52:25,662 !! 2025-09-09T02:52:25,662 check.warn(importable) 2025-09-09T02:52:25,662 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,662 !! 2025-09-09T02:52:25,662 ******************************************************************************** 2025-09-09T02:52:25,662 ############################ 2025-09-09T02:52:25,662 # Package would be ignored # 2025-09-09T02:52:25,662 ############################ 2025-09-09T02:52:25,662 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-09T02:52:25,663 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,663 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,663 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-09T02:52:25,663 to the `packages` configuration field. 2025-09-09T02:52:25,663 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,663 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,663 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,663 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,664 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-09T02:52:25,664 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-09T02:52:25,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,664 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,664 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,664 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,664 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,665 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,665 even if it does not contain any `.py` files. 2025-09-09T02:52:25,665 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,665 directory, all directories are treated like packages. 2025-09-09T02:52:25,665 ******************************************************************************** 2025-09-09T02:52:25,665 !! 2025-09-09T02:52:25,665 check.warn(importable) 2025-09-09T02:52:25,665 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,665 !! 2025-09-09T02:52:25,665 ******************************************************************************** 2025-09-09T02:52:25,666 ############################ 2025-09-09T02:52:25,666 # Package would be ignored # 2025-09-09T02:52:25,666 ############################ 2025-09-09T02:52:25,666 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,666 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,666 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,666 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-09T02:52:25,666 to the `packages` configuration field. 2025-09-09T02:52:25,666 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,667 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,667 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,667 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,667 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-09T02:52:25,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,668 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,668 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,668 even if it does not contain any `.py` files. 2025-09-09T02:52:25,668 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,668 directory, all directories are treated like packages. 2025-09-09T02:52:25,668 ******************************************************************************** 2025-09-09T02:52:25,669 !! 2025-09-09T02:52:25,669 check.warn(importable) 2025-09-09T02:52:25,669 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,669 !! 2025-09-09T02:52:25,669 ******************************************************************************** 2025-09-09T02:52:25,669 ############################ 2025-09-09T02:52:25,669 # Package would be ignored # 2025-09-09T02:52:25,669 ############################ 2025-09-09T02:52:25,669 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-09T02:52:25,669 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,670 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,670 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-09T02:52:25,670 to the `packages` configuration field. 2025-09-09T02:52:25,670 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,670 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,670 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,671 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-09T02:52:25,671 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-09T02:52:25,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,671 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,671 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,671 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,671 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,672 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,672 even if it does not contain any `.py` files. 2025-09-09T02:52:25,672 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,672 directory, all directories are treated like packages. 2025-09-09T02:52:25,672 ******************************************************************************** 2025-09-09T02:52:25,672 !! 2025-09-09T02:52:25,672 check.warn(importable) 2025-09-09T02:52:25,672 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,672 !! 2025-09-09T02:52:25,672 ******************************************************************************** 2025-09-09T02:52:25,673 ############################ 2025-09-09T02:52:25,673 # Package would be ignored # 2025-09-09T02:52:25,673 ############################ 2025-09-09T02:52:25,673 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-09T02:52:25,673 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,673 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,673 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-09T02:52:25,673 to the `packages` configuration field. 2025-09-09T02:52:25,673 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,674 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,674 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,674 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-09T02:52:25,674 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-09T02:52:25,674 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,674 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,674 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,674 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,675 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,675 even if it does not contain any `.py` files. 2025-09-09T02:52:25,675 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,675 directory, all directories are treated like packages. 2025-09-09T02:52:25,675 ******************************************************************************** 2025-09-09T02:52:25,675 !! 2025-09-09T02:52:25,675 check.warn(importable) 2025-09-09T02:52:25,676 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,676 !! 2025-09-09T02:52:25,676 ******************************************************************************** 2025-09-09T02:52:25,676 ############################ 2025-09-09T02:52:25,676 # Package would be ignored # 2025-09-09T02:52:25,676 ############################ 2025-09-09T02:52:25,676 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,676 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,676 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,676 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-09T02:52:25,677 to the `packages` configuration field. 2025-09-09T02:52:25,677 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,677 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,677 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,677 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,677 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-09T02:52:25,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,678 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,678 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,678 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,678 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,678 even if it does not contain any `.py` files. 2025-09-09T02:52:25,679 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,679 directory, all directories are treated like packages. 2025-09-09T02:52:25,679 ******************************************************************************** 2025-09-09T02:52:25,679 !! 2025-09-09T02:52:25,679 check.warn(importable) 2025-09-09T02:52:25,679 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,679 !! 2025-09-09T02:52:25,679 ******************************************************************************** 2025-09-09T02:52:25,680 ############################ 2025-09-09T02:52:25,680 # Package would be ignored # 2025-09-09T02:52:25,680 ############################ 2025-09-09T02:52:25,680 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-09T02:52:25,680 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,680 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-09T02:52:25,680 to the `packages` configuration field. 2025-09-09T02:52:25,680 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,681 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,681 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,681 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-09T02:52:25,681 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-09T02:52:25,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,681 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,681 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,682 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,682 even if it does not contain any `.py` files. 2025-09-09T02:52:25,682 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,682 directory, all directories are treated like packages. 2025-09-09T02:52:25,682 ******************************************************************************** 2025-09-09T02:52:25,682 !! 2025-09-09T02:52:25,683 check.warn(importable) 2025-09-09T02:52:25,683 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,683 !! 2025-09-09T02:52:25,683 ******************************************************************************** 2025-09-09T02:52:25,683 ############################ 2025-09-09T02:52:25,683 # Package would be ignored # 2025-09-09T02:52:25,683 ############################ 2025-09-09T02:52:25,683 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,683 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,683 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,684 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-09T02:52:25,684 to the `packages` configuration field. 2025-09-09T02:52:25,684 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,684 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,684 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,684 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,684 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-09T02:52:25,685 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-09T02:52:25,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,685 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,685 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,685 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,685 even if it does not contain any `.py` files. 2025-09-09T02:52:25,685 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,686 directory, all directories are treated like packages. 2025-09-09T02:52:25,686 ******************************************************************************** 2025-09-09T02:52:25,686 !! 2025-09-09T02:52:25,686 check.warn(importable) 2025-09-09T02:52:25,686 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,686 !! 2025-09-09T02:52:25,686 ******************************************************************************** 2025-09-09T02:52:25,686 ############################ 2025-09-09T02:52:25,686 # Package would be ignored # 2025-09-09T02:52:25,686 ############################ 2025-09-09T02:52:25,687 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,687 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,687 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,687 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,687 to the `packages` configuration field. 2025-09-09T02:52:25,687 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,687 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,687 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,688 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,688 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,688 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-09T02:52:25,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,688 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,688 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,689 even if it does not contain any `.py` files. 2025-09-09T02:52:25,689 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,689 directory, all directories are treated like packages. 2025-09-09T02:52:25,689 ******************************************************************************** 2025-09-09T02:52:25,689 !! 2025-09-09T02:52:25,689 check.warn(importable) 2025-09-09T02:52:25,689 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,689 !! 2025-09-09T02:52:25,690 ******************************************************************************** 2025-09-09T02:52:25,690 ############################ 2025-09-09T02:52:25,690 # Package would be ignored # 2025-09-09T02:52:25,690 ############################ 2025-09-09T02:52:25,690 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-09T02:52:25,690 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,690 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,690 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-09T02:52:25,690 to the `packages` configuration field. 2025-09-09T02:52:25,690 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,691 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,691 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,691 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,691 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-09T02:52:25,691 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-09T02:52:25,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,691 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,692 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,692 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,692 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,692 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,692 even if it does not contain any `.py` files. 2025-09-09T02:52:25,692 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,692 directory, all directories are treated like packages. 2025-09-09T02:52:25,693 ******************************************************************************** 2025-09-09T02:52:25,693 !! 2025-09-09T02:52:25,693 check.warn(importable) 2025-09-09T02:52:25,693 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,693 !! 2025-09-09T02:52:25,693 ******************************************************************************** 2025-09-09T02:52:25,693 ############################ 2025-09-09T02:52:25,693 # Package would be ignored # 2025-09-09T02:52:25,693 ############################ 2025-09-09T02:52:25,693 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-09T02:52:25,694 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,694 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,694 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-09T02:52:25,694 to the `packages` configuration field. 2025-09-09T02:52:25,694 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,694 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,694 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,695 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-09T02:52:25,695 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-09T02:52:25,695 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,695 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,695 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,695 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,696 even if it does not contain any `.py` files. 2025-09-09T02:52:25,696 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,696 directory, all directories are treated like packages. 2025-09-09T02:52:25,696 ******************************************************************************** 2025-09-09T02:52:25,696 !! 2025-09-09T02:52:25,696 check.warn(importable) 2025-09-09T02:52:25,696 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,696 !! 2025-09-09T02:52:25,696 ******************************************************************************** 2025-09-09T02:52:25,697 ############################ 2025-09-09T02:52:25,697 # Package would be ignored # 2025-09-09T02:52:25,697 ############################ 2025-09-09T02:52:25,697 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,697 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,697 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,697 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-09T02:52:25,697 to the `packages` configuration field. 2025-09-09T02:52:25,697 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,698 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,698 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,698 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,698 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-09T02:52:25,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,698 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,699 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,699 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,699 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,699 even if it does not contain any `.py` files. 2025-09-09T02:52:25,699 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,699 directory, all directories are treated like packages. 2025-09-09T02:52:25,699 ******************************************************************************** 2025-09-09T02:52:25,699 !! 2025-09-09T02:52:25,700 check.warn(importable) 2025-09-09T02:52:25,700 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-09T02:52:25,700 !! 2025-09-09T02:52:25,700 ******************************************************************************** 2025-09-09T02:52:25,700 ############################ 2025-09-09T02:52:25,700 # Package would be ignored # 2025-09-09T02:52:25,700 ############################ 2025-09-09T02:52:25,700 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-09T02:52:25,700 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,700 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,701 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-09T02:52:25,701 to the `packages` configuration field. 2025-09-09T02:52:25,701 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,701 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,701 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,701 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-09T02:52:25,702 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-09T02:52:25,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,702 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,702 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,702 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,702 even if it does not contain any `.py` files. 2025-09-09T02:52:25,703 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,703 directory, all directories are treated like packages. 2025-09-09T02:52:25,703 ******************************************************************************** 2025-09-09T02:52:25,703 !! 2025-09-09T02:52:25,703 check.warn(importable) 2025-09-09T02:52:25,703 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,703 !! 2025-09-09T02:52:25,703 ******************************************************************************** 2025-09-09T02:52:25,703 ############################ 2025-09-09T02:52:25,703 # Package would be ignored # 2025-09-09T02:52:25,704 ############################ 2025-09-09T02:52:25,704 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-09T02:52:25,704 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,704 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,704 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-09T02:52:25,704 to the `packages` configuration field. 2025-09-09T02:52:25,704 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,704 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,705 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,705 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-09T02:52:25,705 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-09T02:52:25,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,705 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,705 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,706 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,706 even if it does not contain any `.py` files. 2025-09-09T02:52:25,706 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,706 directory, all directories are treated like packages. 2025-09-09T02:52:25,706 ******************************************************************************** 2025-09-09T02:52:25,706 !! 2025-09-09T02:52:25,706 check.warn(importable) 2025-09-09T02:52:25,707 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-09T02:52:25,707 !! 2025-09-09T02:52:25,707 ******************************************************************************** 2025-09-09T02:52:25,707 ############################ 2025-09-09T02:52:25,707 # Package would be ignored # 2025-09-09T02:52:25,707 ############################ 2025-09-09T02:52:25,707 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-09T02:52:25,707 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,707 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,708 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-09T02:52:25,708 to the `packages` configuration field. 2025-09-09T02:52:25,708 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,708 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,708 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,708 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-09T02:52:25,709 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-09T02:52:25,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,709 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,709 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,709 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,709 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,710 even if it does not contain any `.py` files. 2025-09-09T02:52:25,710 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,710 directory, all directories are treated like packages. 2025-09-09T02:52:25,710 ******************************************************************************** 2025-09-09T02:52:25,710 !! 2025-09-09T02:52:25,710 check.warn(importable) 2025-09-09T02:52:25,710 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,710 !! 2025-09-09T02:52:25,710 ******************************************************************************** 2025-09-09T02:52:25,710 ############################ 2025-09-09T02:52:25,710 # Package would be ignored # 2025-09-09T02:52:25,711 ############################ 2025-09-09T02:52:25,711 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-09T02:52:25,711 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,711 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-09T02:52:25,711 to the `packages` configuration field. 2025-09-09T02:52:25,711 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,711 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,712 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,712 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-09T02:52:25,712 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-09T02:52:25,712 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,712 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,713 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,713 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,713 even if it does not contain any `.py` files. 2025-09-09T02:52:25,713 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,713 directory, all directories are treated like packages. 2025-09-09T02:52:25,713 ******************************************************************************** 2025-09-09T02:52:25,713 !! 2025-09-09T02:52:25,714 check.warn(importable) 2025-09-09T02:52:25,714 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,714 !! 2025-09-09T02:52:25,714 ******************************************************************************** 2025-09-09T02:52:25,714 ############################ 2025-09-09T02:52:25,714 # Package would be ignored # 2025-09-09T02:52:25,714 ############################ 2025-09-09T02:52:25,714 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-09T02:52:25,714 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,714 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,715 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-09T02:52:25,715 to the `packages` configuration field. 2025-09-09T02:52:25,715 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,715 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,715 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,715 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-09T02:52:25,716 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-09T02:52:25,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,716 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,716 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,716 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,717 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,717 even if it does not contain any `.py` files. 2025-09-09T02:52:25,717 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,717 directory, all directories are treated like packages. 2025-09-09T02:52:25,717 ******************************************************************************** 2025-09-09T02:52:25,717 !! 2025-09-09T02:52:25,717 check.warn(importable) 2025-09-09T02:52:25,717 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,717 !! 2025-09-09T02:52:25,717 ******************************************************************************** 2025-09-09T02:52:25,718 ############################ 2025-09-09T02:52:25,718 # Package would be ignored # 2025-09-09T02:52:25,718 ############################ 2025-09-09T02:52:25,718 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,718 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,718 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-09T02:52:25,718 to the `packages` configuration field. 2025-09-09T02:52:25,718 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,719 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,719 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,719 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,719 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-09T02:52:25,719 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-09T02:52:25,719 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,719 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,719 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,720 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,720 even if it does not contain any `.py` files. 2025-09-09T02:52:25,720 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,720 directory, all directories are treated like packages. 2025-09-09T02:52:25,721 ******************************************************************************** 2025-09-09T02:52:25,721 !! 2025-09-09T02:52:25,721 check.warn(importable) 2025-09-09T02:52:25,721 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-09T02:52:25,721 !! 2025-09-09T02:52:25,721 ******************************************************************************** 2025-09-09T02:52:25,721 ############################ 2025-09-09T02:52:25,721 # Package would be ignored # 2025-09-09T02:52:25,721 ############################ 2025-09-09T02:52:25,721 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-09T02:52:25,722 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,722 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,722 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-09T02:52:25,722 to the `packages` configuration field. 2025-09-09T02:52:25,722 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,722 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,722 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,723 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-09T02:52:25,723 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-09T02:52:25,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,723 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,723 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,723 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,724 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,724 even if it does not contain any `.py` files. 2025-09-09T02:52:25,724 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,724 directory, all directories are treated like packages. 2025-09-09T02:52:25,724 ******************************************************************************** 2025-09-09T02:52:25,724 !! 2025-09-09T02:52:25,724 check.warn(importable) 2025-09-09T02:52:25,724 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,724 !! 2025-09-09T02:52:25,725 ******************************************************************************** 2025-09-09T02:52:25,725 ############################ 2025-09-09T02:52:25,725 # Package would be ignored # 2025-09-09T02:52:25,725 ############################ 2025-09-09T02:52:25,725 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-09T02:52:25,725 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,725 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,725 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-09T02:52:25,725 to the `packages` configuration field. 2025-09-09T02:52:25,726 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,726 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,726 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,726 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-09T02:52:25,726 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-09T02:52:25,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,727 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,727 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,727 even if it does not contain any `.py` files. 2025-09-09T02:52:25,727 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,727 directory, all directories are treated like packages. 2025-09-09T02:52:25,727 ******************************************************************************** 2025-09-09T02:52:25,728 !! 2025-09-09T02:52:25,728 check.warn(importable) 2025-09-09T02:52:25,728 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-09T02:52:25,728 !! 2025-09-09T02:52:25,728 ******************************************************************************** 2025-09-09T02:52:25,728 ############################ 2025-09-09T02:52:25,728 # Package would be ignored # 2025-09-09T02:52:25,728 ############################ 2025-09-09T02:52:25,729 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-09T02:52:25,729 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,729 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,729 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-09T02:52:25,729 to the `packages` configuration field. 2025-09-09T02:52:25,729 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,729 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,730 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,730 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-09T02:52:25,730 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-09T02:52:25,730 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,730 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,730 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,730 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,731 even if it does not contain any `.py` files. 2025-09-09T02:52:25,731 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,731 directory, all directories are treated like packages. 2025-09-09T02:52:25,731 ******************************************************************************** 2025-09-09T02:52:25,731 !! 2025-09-09T02:52:25,731 check.warn(importable) 2025-09-09T02:52:25,732 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,732 !! 2025-09-09T02:52:25,732 ******************************************************************************** 2025-09-09T02:52:25,732 ############################ 2025-09-09T02:52:25,732 # Package would be ignored # 2025-09-09T02:52:25,732 ############################ 2025-09-09T02:52:25,732 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-09T02:52:25,732 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,732 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,733 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-09T02:52:25,733 to the `packages` configuration field. 2025-09-09T02:52:25,733 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,733 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,733 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,733 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-09T02:52:25,734 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-09T02:52:25,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,734 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,734 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,734 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,734 even if it does not contain any `.py` files. 2025-09-09T02:52:25,735 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,735 directory, all directories are treated like packages. 2025-09-09T02:52:25,735 ******************************************************************************** 2025-09-09T02:52:25,735 !! 2025-09-09T02:52:25,735 check.warn(importable) 2025-09-09T02:52:25,735 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,735 !! 2025-09-09T02:52:25,735 ******************************************************************************** 2025-09-09T02:52:25,735 ############################ 2025-09-09T02:52:25,736 # Package would be ignored # 2025-09-09T02:52:25,736 ############################ 2025-09-09T02:52:25,736 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,736 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,736 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,736 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-09T02:52:25,736 to the `packages` configuration field. 2025-09-09T02:52:25,736 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,736 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,737 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,737 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,737 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-09T02:52:25,737 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-09T02:52:25,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,737 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,737 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,738 even if it does not contain any `.py` files. 2025-09-09T02:52:25,738 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,738 directory, all directories are treated like packages. 2025-09-09T02:52:25,738 ******************************************************************************** 2025-09-09T02:52:25,738 !! 2025-09-09T02:52:25,738 check.warn(importable) 2025-09-09T02:52:25,738 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,739 !! 2025-09-09T02:52:25,739 ******************************************************************************** 2025-09-09T02:52:25,739 ############################ 2025-09-09T02:52:25,739 # Package would be ignored # 2025-09-09T02:52:25,739 ############################ 2025-09-09T02:52:25,739 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-09T02:52:25,739 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,739 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-09T02:52:25,739 to the `packages` configuration field. 2025-09-09T02:52:25,740 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,740 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,740 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,740 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-09T02:52:25,740 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-09T02:52:25,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,741 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,741 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,741 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,741 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,741 even if it does not contain any `.py` files. 2025-09-09T02:52:25,741 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,741 directory, all directories are treated like packages. 2025-09-09T02:52:25,742 ******************************************************************************** 2025-09-09T02:52:25,742 !! 2025-09-09T02:52:25,742 check.warn(importable) 2025-09-09T02:52:25,742 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,742 !! 2025-09-09T02:52:25,742 ******************************************************************************** 2025-09-09T02:52:25,742 ############################ 2025-09-09T02:52:25,742 # Package would be ignored # 2025-09-09T02:52:25,742 ############################ 2025-09-09T02:52:25,743 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-09T02:52:25,743 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,743 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,743 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-09T02:52:25,743 to the `packages` configuration field. 2025-09-09T02:52:25,743 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,743 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,743 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,744 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,744 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-09T02:52:25,744 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-09T02:52:25,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,744 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,744 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,745 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,745 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,745 even if it does not contain any `.py` files. 2025-09-09T02:52:25,745 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,745 directory, all directories are treated like packages. 2025-09-09T02:52:25,745 ******************************************************************************** 2025-09-09T02:52:25,745 !! 2025-09-09T02:52:25,745 check.warn(importable) 2025-09-09T02:52:25,746 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,746 !! 2025-09-09T02:52:25,746 ******************************************************************************** 2025-09-09T02:52:25,746 ############################ 2025-09-09T02:52:25,746 # Package would be ignored # 2025-09-09T02:52:25,746 ############################ 2025-09-09T02:52:25,746 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,746 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,746 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,746 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,747 to the `packages` configuration field. 2025-09-09T02:52:25,747 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,747 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,747 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,747 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,747 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,747 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-09T02:52:25,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,748 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,748 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,748 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,748 even if it does not contain any `.py` files. 2025-09-09T02:52:25,748 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,748 directory, all directories are treated like packages. 2025-09-09T02:52:25,749 ******************************************************************************** 2025-09-09T02:52:25,749 !! 2025-09-09T02:52:25,749 check.warn(importable) 2025-09-09T02:52:25,749 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-09T02:52:25,749 !! 2025-09-09T02:52:25,749 ******************************************************************************** 2025-09-09T02:52:25,749 ############################ 2025-09-09T02:52:25,749 # Package would be ignored # 2025-09-09T02:52:25,749 ############################ 2025-09-09T02:52:25,749 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-09T02:52:25,750 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,750 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,750 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-09T02:52:25,750 to the `packages` configuration field. 2025-09-09T02:52:25,750 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,750 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,750 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,751 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,751 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-09T02:52:25,751 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-09T02:52:25,751 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,751 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,751 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,752 even if it does not contain any `.py` files. 2025-09-09T02:52:25,752 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,752 directory, all directories are treated like packages. 2025-09-09T02:52:25,752 ******************************************************************************** 2025-09-09T02:52:25,752 !! 2025-09-09T02:52:25,752 check.warn(importable) 2025-09-09T02:52:25,752 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,752 !! 2025-09-09T02:52:25,753 ******************************************************************************** 2025-09-09T02:52:25,753 ############################ 2025-09-09T02:52:25,753 # Package would be ignored # 2025-09-09T02:52:25,753 ############################ 2025-09-09T02:52:25,753 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-09T02:52:25,753 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,753 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,753 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-09T02:52:25,753 to the `packages` configuration field. 2025-09-09T02:52:25,753 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,754 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,754 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,754 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-09T02:52:25,754 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-09T02:52:25,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,754 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,755 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,755 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,755 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,755 even if it does not contain any `.py` files. 2025-09-09T02:52:25,755 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,755 directory, all directories are treated like packages. 2025-09-09T02:52:25,755 ******************************************************************************** 2025-09-09T02:52:25,756 !! 2025-09-09T02:52:25,756 check.warn(importable) 2025-09-09T02:52:25,756 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,756 !! 2025-09-09T02:52:25,756 ******************************************************************************** 2025-09-09T02:52:25,756 ############################ 2025-09-09T02:52:25,756 # Package would be ignored # 2025-09-09T02:52:25,756 ############################ 2025-09-09T02:52:25,756 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,756 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,757 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,757 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-09T02:52:25,757 to the `packages` configuration field. 2025-09-09T02:52:25,757 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,757 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,757 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,758 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-09T02:52:25,758 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-09T02:52:25,758 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,758 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,758 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,758 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,759 even if it does not contain any `.py` files. 2025-09-09T02:52:25,759 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,759 directory, all directories are treated like packages. 2025-09-09T02:52:25,759 ******************************************************************************** 2025-09-09T02:52:25,759 !! 2025-09-09T02:52:25,759 check.warn(importable) 2025-09-09T02:52:25,759 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,759 !! 2025-09-09T02:52:25,759 ******************************************************************************** 2025-09-09T02:52:25,760 ############################ 2025-09-09T02:52:25,760 # Package would be ignored # 2025-09-09T02:52:25,760 ############################ 2025-09-09T02:52:25,760 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-09T02:52:25,760 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,760 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,760 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-09T02:52:25,760 to the `packages` configuration field. 2025-09-09T02:52:25,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,761 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,761 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,761 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-09T02:52:25,761 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-09T02:52:25,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,761 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,762 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,762 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,762 even if it does not contain any `.py` files. 2025-09-09T02:52:25,762 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,762 directory, all directories are treated like packages. 2025-09-09T02:52:25,762 ******************************************************************************** 2025-09-09T02:52:25,762 !! 2025-09-09T02:52:25,762 check.warn(importable) 2025-09-09T02:52:25,763 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-09T02:52:25,763 !! 2025-09-09T02:52:25,763 ******************************************************************************** 2025-09-09T02:52:25,763 ############################ 2025-09-09T02:52:25,763 # Package would be ignored # 2025-09-09T02:52:25,763 ############################ 2025-09-09T02:52:25,763 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-09T02:52:25,763 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,763 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,764 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-09T02:52:25,764 to the `packages` configuration field. 2025-09-09T02:52:25,764 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,764 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,764 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,764 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-09T02:52:25,764 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-09T02:52:25,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,765 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,765 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,765 even if it does not contain any `.py` files. 2025-09-09T02:52:25,765 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,766 directory, all directories are treated like packages. 2025-09-09T02:52:25,766 ******************************************************************************** 2025-09-09T02:52:25,766 !! 2025-09-09T02:52:25,766 check.warn(importable) 2025-09-09T02:52:25,766 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-09T02:52:25,766 !! 2025-09-09T02:52:25,766 ******************************************************************************** 2025-09-09T02:52:25,766 ############################ 2025-09-09T02:52:25,766 # Package would be ignored # 2025-09-09T02:52:25,766 ############################ 2025-09-09T02:52:25,767 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-09T02:52:25,767 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,767 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,767 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-09T02:52:25,767 to the `packages` configuration field. 2025-09-09T02:52:25,767 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,767 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,768 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,768 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,768 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-09T02:52:25,768 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-09T02:52:25,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,768 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,768 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,769 even if it does not contain any `.py` files. 2025-09-09T02:52:25,769 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,769 directory, all directories are treated like packages. 2025-09-09T02:52:25,769 ******************************************************************************** 2025-09-09T02:52:25,769 !! 2025-09-09T02:52:25,769 check.warn(importable) 2025-09-09T02:52:25,770 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-09T02:52:25,770 !! 2025-09-09T02:52:25,770 ******************************************************************************** 2025-09-09T02:52:25,770 ############################ 2025-09-09T02:52:25,770 # Package would be ignored # 2025-09-09T02:52:25,770 ############################ 2025-09-09T02:52:25,770 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-09T02:52:25,770 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,770 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,771 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-09T02:52:25,771 to the `packages` configuration field. 2025-09-09T02:52:25,771 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,771 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,771 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,771 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-09T02:52:25,772 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-09T02:52:25,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,772 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,772 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,772 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,772 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,772 even if it does not contain any `.py` files. 2025-09-09T02:52:25,773 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,773 directory, all directories are treated like packages. 2025-09-09T02:52:25,773 ******************************************************************************** 2025-09-09T02:52:25,773 !! 2025-09-09T02:52:25,773 check.warn(importable) 2025-09-09T02:52:25,773 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,773 !! 2025-09-09T02:52:25,773 ******************************************************************************** 2025-09-09T02:52:25,773 ############################ 2025-09-09T02:52:25,773 # Package would be ignored # 2025-09-09T02:52:25,774 ############################ 2025-09-09T02:52:25,774 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,774 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,774 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,774 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-09T02:52:25,774 to the `packages` configuration field. 2025-09-09T02:52:25,774 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,774 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,774 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,774 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,775 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,775 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-09T02:52:25,775 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-09T02:52:25,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,775 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,775 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,776 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,776 even if it does not contain any `.py` files. 2025-09-09T02:52:25,776 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,776 directory, all directories are treated like packages. 2025-09-09T02:52:25,776 ******************************************************************************** 2025-09-09T02:52:25,776 !! 2025-09-09T02:52:25,776 check.warn(importable) 2025-09-09T02:52:25,776 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-09T02:52:25,777 !! 2025-09-09T02:52:25,777 ******************************************************************************** 2025-09-09T02:52:25,777 ############################ 2025-09-09T02:52:25,777 # Package would be ignored # 2025-09-09T02:52:25,777 ############################ 2025-09-09T02:52:25,777 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-09T02:52:25,777 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,777 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,777 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-09T02:52:25,777 to the `packages` configuration field. 2025-09-09T02:52:25,778 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,778 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,778 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,778 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-09T02:52:25,778 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-09T02:52:25,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,778 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,779 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,779 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,779 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,779 even if it does not contain any `.py` files. 2025-09-09T02:52:25,779 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,779 directory, all directories are treated like packages. 2025-09-09T02:52:25,779 ******************************************************************************** 2025-09-09T02:52:25,780 !! 2025-09-09T02:52:25,780 check.warn(importable) 2025-09-09T02:52:25,780 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-09T02:52:25,780 !! 2025-09-09T02:52:25,780 ******************************************************************************** 2025-09-09T02:52:25,780 ############################ 2025-09-09T02:52:25,780 # Package would be ignored # 2025-09-09T02:52:25,780 ############################ 2025-09-09T02:52:25,781 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-09T02:52:25,781 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,781 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,781 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-09T02:52:25,781 to the `packages` configuration field. 2025-09-09T02:52:25,781 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,781 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,781 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,782 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,782 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-09T02:52:25,782 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-09T02:52:25,782 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,782 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,782 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,782 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,783 even if it does not contain any `.py` files. 2025-09-09T02:52:25,783 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,783 directory, all directories are treated like packages. 2025-09-09T02:52:25,783 ******************************************************************************** 2025-09-09T02:52:25,783 !! 2025-09-09T02:52:25,783 check.warn(importable) 2025-09-09T02:52:25,783 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-09T02:52:25,783 !! 2025-09-09T02:52:25,784 ******************************************************************************** 2025-09-09T02:52:25,784 ############################ 2025-09-09T02:52:25,784 # Package would be ignored # 2025-09-09T02:52:25,784 ############################ 2025-09-09T02:52:25,784 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-09T02:52:25,784 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,784 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,784 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-09T02:52:25,784 to the `packages` configuration field. 2025-09-09T02:52:25,785 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,785 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,785 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,785 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,785 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-09T02:52:25,785 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-09T02:52:25,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,785 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,786 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,786 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,786 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,786 even if it does not contain any `.py` files. 2025-09-09T02:52:25,786 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,786 directory, all directories are treated like packages. 2025-09-09T02:52:25,786 ******************************************************************************** 2025-09-09T02:52:25,787 !! 2025-09-09T02:52:25,787 check.warn(importable) 2025-09-09T02:52:25,787 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-09T02:52:25,787 !! 2025-09-09T02:52:25,787 ******************************************************************************** 2025-09-09T02:52:25,787 ############################ 2025-09-09T02:52:25,787 # Package would be ignored # 2025-09-09T02:52:25,787 ############################ 2025-09-09T02:52:25,787 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-09T02:52:25,787 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,788 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,788 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-09T02:52:25,788 to the `packages` configuration field. 2025-09-09T02:52:25,788 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,788 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,788 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,789 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-09T02:52:25,789 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-09T02:52:25,789 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,789 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,789 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,789 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,789 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,790 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,790 even if it does not contain any `.py` files. 2025-09-09T02:52:25,790 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,790 directory, all directories are treated like packages. 2025-09-09T02:52:25,790 ******************************************************************************** 2025-09-09T02:52:25,790 !! 2025-09-09T02:52:25,790 check.warn(importable) 2025-09-09T02:52:25,790 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-09T02:52:25,790 !! 2025-09-09T02:52:25,790 ******************************************************************************** 2025-09-09T02:52:25,791 ############################ 2025-09-09T02:52:25,791 # Package would be ignored # 2025-09-09T02:52:25,791 ############################ 2025-09-09T02:52:25,791 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-09T02:52:25,791 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,791 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,791 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-09T02:52:25,791 to the `packages` configuration field. 2025-09-09T02:52:25,791 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,792 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,792 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,792 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,792 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-09T02:52:25,792 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-09T02:52:25,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,792 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,793 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,793 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,793 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,793 even if it does not contain any `.py` files. 2025-09-09T02:52:25,793 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,793 directory, all directories are treated like packages. 2025-09-09T02:52:25,793 ******************************************************************************** 2025-09-09T02:52:25,794 !! 2025-09-09T02:52:25,794 check.warn(importable) 2025-09-09T02:52:25,794 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-09T02:52:25,794 !! 2025-09-09T02:52:25,794 ******************************************************************************** 2025-09-09T02:52:25,794 ############################ 2025-09-09T02:52:25,794 # Package would be ignored # 2025-09-09T02:52:25,794 ############################ 2025-09-09T02:52:25,794 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-09T02:52:25,794 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,795 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,795 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-09T02:52:25,795 to the `packages` configuration field. 2025-09-09T02:52:25,795 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,795 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,795 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,795 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,796 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-09T02:52:25,796 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-09T02:52:25,796 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,796 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,796 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,796 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,797 even if it does not contain any `.py` files. 2025-09-09T02:52:25,797 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,797 directory, all directories are treated like packages. 2025-09-09T02:52:25,797 ******************************************************************************** 2025-09-09T02:52:25,797 !! 2025-09-09T02:52:25,797 check.warn(importable) 2025-09-09T02:52:25,797 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-09T02:52:25,797 !! 2025-09-09T02:52:25,798 ******************************************************************************** 2025-09-09T02:52:25,798 ############################ 2025-09-09T02:52:25,798 # Package would be ignored # 2025-09-09T02:52:25,798 ############################ 2025-09-09T02:52:25,798 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-09T02:52:25,798 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,798 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,798 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-09T02:52:25,798 to the `packages` configuration field. 2025-09-09T02:52:25,799 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,799 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,799 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,799 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,799 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,799 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-09T02:52:25,799 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-09T02:52:25,799 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,800 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,800 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,800 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,800 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,800 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,800 even if it does not contain any `.py` files. 2025-09-09T02:52:25,800 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,800 directory, all directories are treated like packages. 2025-09-09T02:52:25,801 ******************************************************************************** 2025-09-09T02:52:25,801 !! 2025-09-09T02:52:25,801 check.warn(importable) 2025-09-09T02:52:25,801 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,801 !! 2025-09-09T02:52:25,801 ******************************************************************************** 2025-09-09T02:52:25,801 ############################ 2025-09-09T02:52:25,801 # Package would be ignored # 2025-09-09T02:52:25,801 ############################ 2025-09-09T02:52:25,801 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,802 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,802 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,802 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-09T02:52:25,802 to the `packages` configuration field. 2025-09-09T02:52:25,802 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,802 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,802 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,803 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,803 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-09T02:52:25,803 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-09T02:52:25,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,803 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,803 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,803 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,804 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,804 even if it does not contain any `.py` files. 2025-09-09T02:52:25,804 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,804 directory, all directories are treated like packages. 2025-09-09T02:52:25,804 ******************************************************************************** 2025-09-09T02:52:25,804 !! 2025-09-09T02:52:25,804 check.warn(importable) 2025-09-09T02:52:25,804 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-09T02:52:25,804 !! 2025-09-09T02:52:25,805 ******************************************************************************** 2025-09-09T02:52:25,805 ############################ 2025-09-09T02:52:25,805 # Package would be ignored # 2025-09-09T02:52:25,805 ############################ 2025-09-09T02:52:25,805 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-09T02:52:25,805 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,805 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,805 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-09T02:52:25,805 to the `packages` configuration field. 2025-09-09T02:52:25,806 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,806 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,806 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,806 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,806 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-09T02:52:25,806 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-09T02:52:25,807 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,807 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,807 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,807 even if it does not contain any `.py` files. 2025-09-09T02:52:25,807 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,808 directory, all directories are treated like packages. 2025-09-09T02:52:25,808 ******************************************************************************** 2025-09-09T02:52:25,808 !! 2025-09-09T02:52:25,808 check.warn(importable) 2025-09-09T02:52:25,808 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-09T02:52:25,808 !! 2025-09-09T02:52:25,808 ******************************************************************************** 2025-09-09T02:52:25,808 ############################ 2025-09-09T02:52:25,808 # Package would be ignored # 2025-09-09T02:52:25,808 ############################ 2025-09-09T02:52:25,809 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-09T02:52:25,809 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,809 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,809 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-09T02:52:25,809 to the `packages` configuration field. 2025-09-09T02:52:25,809 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,809 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,809 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,809 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,810 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-09T02:52:25,810 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-09T02:52:25,810 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,810 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,810 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,810 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,811 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,811 even if it does not contain any `.py` files. 2025-09-09T02:52:25,811 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,811 directory, all directories are treated like packages. 2025-09-09T02:52:25,811 ******************************************************************************** 2025-09-09T02:52:25,811 !! 2025-09-09T02:52:25,811 check.warn(importable) 2025-09-09T02:52:25,811 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-09T02:52:25,812 !! 2025-09-09T02:52:25,812 ******************************************************************************** 2025-09-09T02:52:25,812 ############################ 2025-09-09T02:52:25,812 # Package would be ignored # 2025-09-09T02:52:25,812 ############################ 2025-09-09T02:52:25,812 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-09T02:52:25,812 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,812 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,812 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-09T02:52:25,812 to the `packages` configuration field. 2025-09-09T02:52:25,813 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,813 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,813 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,813 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,813 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-09T02:52:25,813 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-09T02:52:25,813 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,814 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,814 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,814 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,814 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,814 even if it does not contain any `.py` files. 2025-09-09T02:52:25,814 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,814 directory, all directories are treated like packages. 2025-09-09T02:52:25,815 ******************************************************************************** 2025-09-09T02:52:25,815 !! 2025-09-09T02:52:25,815 check.warn(importable) 2025-09-09T02:52:25,815 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,815 !! 2025-09-09T02:52:25,815 ******************************************************************************** 2025-09-09T02:52:25,815 ############################ 2025-09-09T02:52:25,815 # Package would be ignored # 2025-09-09T02:52:25,815 ############################ 2025-09-09T02:52:25,815 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-09T02:52:25,816 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,816 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,816 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-09T02:52:25,816 to the `packages` configuration field. 2025-09-09T02:52:25,816 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,816 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,816 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,816 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,817 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-09T02:52:25,817 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-09T02:52:25,817 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,817 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,817 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,818 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,818 even if it does not contain any `.py` files. 2025-09-09T02:52:25,818 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,818 directory, all directories are treated like packages. 2025-09-09T02:52:25,818 ******************************************************************************** 2025-09-09T02:52:25,818 !! 2025-09-09T02:52:25,818 check.warn(importable) 2025-09-09T02:52:25,818 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-09T02:52:25,818 !! 2025-09-09T02:52:25,819 ******************************************************************************** 2025-09-09T02:52:25,819 ############################ 2025-09-09T02:52:25,819 # Package would be ignored # 2025-09-09T02:52:25,819 ############################ 2025-09-09T02:52:25,819 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-09T02:52:25,819 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,819 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,819 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-09T02:52:25,819 to the `packages` configuration field. 2025-09-09T02:52:25,820 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,820 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,820 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,820 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,820 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-09T02:52:25,820 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-09T02:52:25,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,821 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,821 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,821 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,821 even if it does not contain any `.py` files. 2025-09-09T02:52:25,821 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,821 directory, all directories are treated like packages. 2025-09-09T02:52:25,822 ******************************************************************************** 2025-09-09T02:52:25,822 !! 2025-09-09T02:52:25,822 check.warn(importable) 2025-09-09T02:52:25,822 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,822 !! 2025-09-09T02:52:25,822 ******************************************************************************** 2025-09-09T02:52:25,822 ############################ 2025-09-09T02:52:25,822 # Package would be ignored # 2025-09-09T02:52:25,822 ############################ 2025-09-09T02:52:25,822 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-09T02:52:25,823 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,823 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,823 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-09T02:52:25,823 to the `packages` configuration field. 2025-09-09T02:52:25,823 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,823 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,823 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,823 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,824 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-09T02:52:25,824 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-09T02:52:25,824 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,824 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,824 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,824 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,824 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,825 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,825 even if it does not contain any `.py` files. 2025-09-09T02:52:25,825 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,825 directory, all directories are treated like packages. 2025-09-09T02:52:25,825 ******************************************************************************** 2025-09-09T02:52:25,825 !! 2025-09-09T02:52:25,825 check.warn(importable) 2025-09-09T02:52:25,825 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,825 !! 2025-09-09T02:52:25,826 ******************************************************************************** 2025-09-09T02:52:25,826 ############################ 2025-09-09T02:52:25,826 # Package would be ignored # 2025-09-09T02:52:25,826 ############################ 2025-09-09T02:52:25,826 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-09T02:52:25,826 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,826 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,826 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-09T02:52:25,826 to the `packages` configuration field. 2025-09-09T02:52:25,827 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,827 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,827 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,827 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,827 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,827 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-09T02:52:25,827 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-09T02:52:25,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,828 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,828 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,828 even if it does not contain any `.py` files. 2025-09-09T02:52:25,828 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,828 directory, all directories are treated like packages. 2025-09-09T02:52:25,829 ******************************************************************************** 2025-09-09T02:52:25,829 !! 2025-09-09T02:52:25,829 check.warn(importable) 2025-09-09T02:52:25,829 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,829 !! 2025-09-09T02:52:25,829 ******************************************************************************** 2025-09-09T02:52:25,829 ############################ 2025-09-09T02:52:25,829 # Package would be ignored # 2025-09-09T02:52:25,829 ############################ 2025-09-09T02:52:25,829 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-09T02:52:25,830 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,830 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,830 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-09T02:52:25,830 to the `packages` configuration field. 2025-09-09T02:52:25,830 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,830 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,830 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,831 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-09T02:52:25,831 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-09T02:52:25,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,831 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,831 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,832 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,832 even if it does not contain any `.py` files. 2025-09-09T02:52:25,832 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,832 directory, all directories are treated like packages. 2025-09-09T02:52:25,832 ******************************************************************************** 2025-09-09T02:52:25,832 !! 2025-09-09T02:52:25,832 check.warn(importable) 2025-09-09T02:52:25,832 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,833 !! 2025-09-09T02:52:25,833 ******************************************************************************** 2025-09-09T02:52:25,833 ############################ 2025-09-09T02:52:25,833 # Package would be ignored # 2025-09-09T02:52:25,833 ############################ 2025-09-09T02:52:25,833 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-09T02:52:25,833 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,833 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-09T02:52:25,833 to the `packages` configuration field. 2025-09-09T02:52:25,834 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,834 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,834 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,834 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,834 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-09T02:52:25,834 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-09T02:52:25,835 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,835 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,835 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,835 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,835 even if it does not contain any `.py` files. 2025-09-09T02:52:25,836 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,836 directory, all directories are treated like packages. 2025-09-09T02:52:25,836 ******************************************************************************** 2025-09-09T02:52:25,836 !! 2025-09-09T02:52:25,836 check.warn(importable) 2025-09-09T02:52:25,836 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,836 !! 2025-09-09T02:52:25,836 ******************************************************************************** 2025-09-09T02:52:25,836 ############################ 2025-09-09T02:52:25,836 # Package would be ignored # 2025-09-09T02:52:25,837 ############################ 2025-09-09T02:52:25,837 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-09T02:52:25,837 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,837 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,837 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-09T02:52:25,837 to the `packages` configuration field. 2025-09-09T02:52:25,837 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,837 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,838 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,838 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-09T02:52:25,838 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-09T02:52:25,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,838 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,838 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,839 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,839 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,839 even if it does not contain any `.py` files. 2025-09-09T02:52:25,839 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,839 directory, all directories are treated like packages. 2025-09-09T02:52:25,839 ******************************************************************************** 2025-09-09T02:52:25,839 !! 2025-09-09T02:52:25,840 check.warn(importable) 2025-09-09T02:52:25,840 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,840 !! 2025-09-09T02:52:25,840 ******************************************************************************** 2025-09-09T02:52:25,840 ############################ 2025-09-09T02:52:25,840 # Package would be ignored # 2025-09-09T02:52:25,840 ############################ 2025-09-09T02:52:25,840 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-09T02:52:25,840 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,841 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,841 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-09T02:52:25,841 to the `packages` configuration field. 2025-09-09T02:52:25,841 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,841 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,841 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,842 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-09T02:52:25,842 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-09T02:52:25,842 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,842 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,842 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,842 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,843 even if it does not contain any `.py` files. 2025-09-09T02:52:25,843 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,843 directory, all directories are treated like packages. 2025-09-09T02:52:25,843 ******************************************************************************** 2025-09-09T02:52:25,843 !! 2025-09-09T02:52:25,843 check.warn(importable) 2025-09-09T02:52:25,843 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,843 !! 2025-09-09T02:52:25,844 ******************************************************************************** 2025-09-09T02:52:25,844 ############################ 2025-09-09T02:52:25,844 # Package would be ignored # 2025-09-09T02:52:25,844 ############################ 2025-09-09T02:52:25,844 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-09T02:52:25,844 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,844 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,844 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-09T02:52:25,844 to the `packages` configuration field. 2025-09-09T02:52:25,845 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,845 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,845 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,845 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-09T02:52:25,845 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-09T02:52:25,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,846 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,846 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,846 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,846 even if it does not contain any `.py` files. 2025-09-09T02:52:25,846 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,847 directory, all directories are treated like packages. 2025-09-09T02:52:25,847 ******************************************************************************** 2025-09-09T02:52:25,847 !! 2025-09-09T02:52:25,847 check.warn(importable) 2025-09-09T02:52:25,847 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-09T02:52:25,847 !! 2025-09-09T02:52:25,847 ******************************************************************************** 2025-09-09T02:52:25,847 ############################ 2025-09-09T02:52:25,847 # Package would be ignored # 2025-09-09T02:52:25,848 ############################ 2025-09-09T02:52:25,848 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-09T02:52:25,848 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,848 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,848 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-09T02:52:25,848 to the `packages` configuration field. 2025-09-09T02:52:25,848 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,848 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,848 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,849 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,849 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-09T02:52:25,849 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-09T02:52:25,849 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,849 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,850 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,850 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,850 even if it does not contain any `.py` files. 2025-09-09T02:52:25,850 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,850 directory, all directories are treated like packages. 2025-09-09T02:52:25,850 ******************************************************************************** 2025-09-09T02:52:25,851 !! 2025-09-09T02:52:25,851 check.warn(importable) 2025-09-09T02:52:25,851 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-09T02:52:25,851 !! 2025-09-09T02:52:25,851 ******************************************************************************** 2025-09-09T02:52:25,851 ############################ 2025-09-09T02:52:25,851 # Package would be ignored # 2025-09-09T02:52:25,851 ############################ 2025-09-09T02:52:25,851 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-09T02:52:25,851 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,852 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,852 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-09T02:52:25,852 to the `packages` configuration field. 2025-09-09T02:52:25,852 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,852 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,852 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,852 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,852 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,853 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-09T02:52:25,853 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-09T02:52:25,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,853 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,853 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,853 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,853 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,854 even if it does not contain any `.py` files. 2025-09-09T02:52:25,854 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,854 directory, all directories are treated like packages. 2025-09-09T02:52:25,854 ******************************************************************************** 2025-09-09T02:52:25,854 !! 2025-09-09T02:52:25,854 check.warn(importable) 2025-09-09T02:52:25,854 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-09T02:52:25,854 !! 2025-09-09T02:52:25,855 ******************************************************************************** 2025-09-09T02:52:25,855 ############################ 2025-09-09T02:52:25,855 # Package would be ignored # 2025-09-09T02:52:25,855 ############################ 2025-09-09T02:52:25,855 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-09T02:52:25,855 but it is absent from setuptools' `packages` configuration. 2025-09-09T02:52:25,855 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T02:52:25,855 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-09T02:52:25,855 to the `packages` configuration field. 2025-09-09T02:52:25,856 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T02:52:25,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T02:52:25,856 instead of `find_packages(...)`/`find:`). 2025-09-09T02:52:25,856 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T02:52:25,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T02:52:25,856 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-09T02:52:25,856 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-09T02:52:25,856 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T02:52:25,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T02:52:25,857 combination with a more fine grained `package-data` configuration. 2025-09-09T02:52:25,857 You can read more about "package data files" on setuptools documentation page: 2025-09-09T02:52:25,857 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T02:52:25,857 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T02:52:25,857 even if it does not contain any `.py` files. 2025-09-09T02:52:25,857 On the other hand, currently there is no concept of package data 2025-09-09T02:52:25,857 directory, all directories are treated like packages. 2025-09-09T02:52:25,858 ******************************************************************************** 2025-09-09T02:52:25,858 !! 2025-09-09T02:52:25,858 check.warn(importable) 2025-09-09T02:52:25,858 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T02:52:25,858 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T02:52:25,858 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,858 copying lightdock/test/util/golden_data/lightdock_1czy_peptide.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,858 copying lightdock/test/util/golden_data/lightdock_1czy_protein.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,858 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,858 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,859 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,859 copying lightdock/test/util/golden_data/pdbs.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T02:52:25,859 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T02:52:25,859 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T02:52:25,859 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T02:52:25,859 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T02:52:25,859 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T02:52:25,859 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T02:52:25,859 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T02:52:25,859 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T02:52:25,860 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T02:52:25,860 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T02:52:25,860 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T02:52:25,860 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T02:52:25,860 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,860 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,860 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,860 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,860 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,861 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,861 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,862 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,863 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,864 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,865 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,866 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,866 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,868 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T02:52:25,869 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T02:52:25,870 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T02:52:25,870 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T02:52:25,871 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,872 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,872 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,876 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,877 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,878 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,878 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,879 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,880 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,881 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,881 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,882 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,882 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,883 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T02:52:25,883 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,883 copying lightdock/test/prep/golden_data/3p0g/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,884 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,885 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,886 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,887 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,888 copying lightdock/test/prep/golden_data/3p0g/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,889 copying lightdock/test/prep/golden_data/3p0g/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,890 copying lightdock/test/prep/golden_data/3p0g/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T02:52:25,890 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,890 copying lightdock/test/prep/golden_data/3p0g/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,891 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,891 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,892 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,893 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,893 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,894 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T02:52:25,894 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,894 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,895 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,896 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,896 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,897 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T02:52:25,897 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T02:52:25,898 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T02:52:25,898 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T02:52:25,899 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T02:52:25,900 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T02:52:25,900 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,900 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,901 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,902 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,903 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,903 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,904 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,904 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,905 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,905 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,906 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,906 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,907 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,908 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,908 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T02:52:25,909 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T02:52:25,909 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T02:52:25,909 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T02:52:25,910 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,910 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,911 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,912 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,913 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,913 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,914 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,914 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,915 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,916 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,916 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T02:52:25,917 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,917 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,918 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,918 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,919 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,919 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,920 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,920 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,921 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,922 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,922 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,923 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,923 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,924 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,924 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,925 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,926 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T02:52:25,926 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T02:52:25,926 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T02:52:25,927 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T02:52:25,928 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T02:52:25,928 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T02:52:25,928 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T02:52:25,929 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T02:52:25,929 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T02:52:25,930 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T02:52:25,930 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T02:52:25,931 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T02:52:25,931 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T02:52:25,932 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T02:52:25,932 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T02:52:25,933 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T02:52:25,933 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,933 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,934 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,935 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,936 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,936 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,937 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,938 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,938 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,939 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T02:52:25,940 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T02:52:25,940 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T02:52:25,940 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T02:52:25,941 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T02:52:25,941 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T02:52:25,942 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T02:52:25,942 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T02:52:25,943 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T02:52:25,943 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,944 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,944 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,945 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,946 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,946 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,947 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,948 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,949 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,949 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,950 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T02:52:25,950 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T02:52:25,951 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T02:52:25,951 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T02:52:25,952 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T02:52:25,952 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T02:52:25,953 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T02:52:25,953 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T02:52:25,954 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T02:52:25,954 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,954 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,955 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,956 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,957 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,957 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,958 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,958 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,959 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,960 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,960 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T02:52:25,961 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,961 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,962 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,962 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,963 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,963 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,964 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,965 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,965 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,966 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,966 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,967 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,967 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,968 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,969 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,969 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,970 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T02:52:25,970 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T02:52:25,970 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T02:52:25,971 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T02:52:25,972 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T02:52:25,972 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T02:52:25,972 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T02:52:25,973 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T02:52:25,973 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T02:52:25,974 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T02:52:25,974 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T02:52:25,974 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T02:52:25,975 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T02:52:25,976 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T02:52:25,976 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T02:52:25,976 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T02:52:25,977 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,977 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,978 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,979 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,979 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,980 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,981 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,981 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,982 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,983 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,983 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T02:52:25,984 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T02:52:25,984 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T02:52:25,985 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T02:52:25,985 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T02:52:25,986 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T02:52:25,986 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T02:52:25,987 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T02:52:25,987 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T02:52:25,988 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,988 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,989 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,991 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,991 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,992 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,993 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,994 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,995 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,996 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T02:52:25,996 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T02:52:25,996 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T02:52:25,997 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T02:52:25,997 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T02:52:25,998 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T02:52:25,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T02:52:25,999 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T02:52:25,999 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T02:52:26,000 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,000 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,001 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,003 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,003 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,004 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,004 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,006 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,007 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,008 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,012 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T02:52:26,013 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T02:52:26,013 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T02:52:26,014 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T02:52:26,014 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T02:52:26,015 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T02:52:26,015 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T02:52:26,016 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T02:52:26,016 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T02:52:26,017 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,017 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,018 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,019 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,019 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,020 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,021 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,021 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,022 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,023 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,023 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T02:52:26,024 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,024 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,025 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,025 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,026 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,026 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,027 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,027 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,028 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,029 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,029 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,030 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,031 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,031 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,032 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,032 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,033 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T02:52:26,033 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T02:52:26,034 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T02:52:26,034 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T02:52:26,035 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T02:52:26,035 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T02:52:26,036 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T02:52:26,036 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T02:52:26,036 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T02:52:26,037 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T02:52:26,037 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T02:52:26,038 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T02:52:26,038 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T02:52:26,039 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T02:52:26,039 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T02:52:26,040 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T02:52:26,040 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,040 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,041 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,042 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,043 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,043 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,044 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,045 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,045 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,046 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,047 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T02:52:26,047 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T02:52:26,047 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T02:52:26,048 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T02:52:26,048 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T02:52:26,049 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T02:52:26,050 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T02:52:26,050 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T02:52:26,050 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T02:52:26,051 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T02:52:26,051 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,052 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,052 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,053 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,054 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,054 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,055 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,056 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,057 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,057 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,058 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T02:52:26,058 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T02:52:26,059 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T02:52:26,059 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T02:52:26,060 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T02:52:26,060 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T02:52:26,061 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T02:52:26,061 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T02:52:26,062 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T02:52:26,062 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,062 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,063 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,064 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,065 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,065 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,066 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,066 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,067 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,068 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,068 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T02:52:26,069 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T02:52:26,069 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T02:52:26,070 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T02:52:26,071 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T02:52:26,071 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T02:52:26,072 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T02:52:26,072 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T02:52:26,073 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T02:52:26,073 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T02:52:26,074 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,074 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,075 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,076 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,076 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,077 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,077 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,078 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,079 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,080 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,080 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T02:52:26,081 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T02:52:26,081 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T02:52:26,081 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T02:52:26,082 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T02:52:26,083 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T02:52:26,083 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T02:52:26,083 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T02:52:26,084 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T02:52:26,084 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,085 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,085 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,086 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,087 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,087 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,088 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,089 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,090 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,090 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,091 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T02:52:26,091 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T02:52:26,092 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T02:52:26,092 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T02:52:26,093 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T02:52:26,093 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T02:52:26,094 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T02:52:26,094 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T02:52:26,095 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T02:52:26,095 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,096 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,096 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,097 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,098 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,098 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,099 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,100 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,101 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,101 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T02:52:26,102 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T02:52:26,102 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T02:52:26,102 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T02:52:26,103 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T02:52:26,104 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T02:52:26,104 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T02:52:26,104 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T02:52:26,105 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T02:52:26,105 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,106 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,106 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,107 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,108 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,108 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,109 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,110 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,111 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,111 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,112 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T02:52:26,112 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T02:52:26,113 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T02:52:26,113 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T02:52:26,114 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T02:52:26,114 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T02:52:26,115 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T02:52:26,115 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T02:52:26,116 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T02:52:26,116 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,116 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,117 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,118 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,119 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,120 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,121 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,122 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,122 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,124 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,124 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,125 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T02:52:26,125 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T02:52:26,126 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T02:52:26,126 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T02:52:26,127 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T02:52:26,127 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T02:52:26,128 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T02:52:26,128 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T02:52:26,129 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T02:52:26,129 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,130 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,130 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,131 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,132 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,132 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,133 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,134 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,135 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,135 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T02:52:26,136 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T02:52:26,136 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T02:52:26,136 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T02:52:26,137 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T02:52:26,137 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T02:52:26,138 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T02:52:26,138 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T02:52:26,139 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T02:52:26,139 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T02:52:26,140 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,140 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,141 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,142 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,143 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,144 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,145 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,145 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,146 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,146 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T02:52:26,147 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T02:52:26,147 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T02:52:26,148 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T02:52:26,148 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T02:52:26,149 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T02:52:26,149 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T02:52:26,150 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T02:52:26,150 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T02:52:26,151 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,151 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,152 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,153 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,153 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,154 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,155 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,155 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,156 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,158 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T02:52:26,159 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,159 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,160 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,160 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,161 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,162 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,162 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,163 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,163 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,164 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,164 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,165 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,165 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,166 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,166 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,167 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,167 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T02:52:26,168 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,168 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,171 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,174 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,174 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,176 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,177 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,179 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T02:52:26,179 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,180 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,180 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,181 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,181 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,182 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,182 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,183 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,184 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,184 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,185 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,185 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,186 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,186 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,187 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,187 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,188 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,188 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,189 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,189 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,190 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,190 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,191 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,191 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,192 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,193 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,193 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,194 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,194 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,195 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,195 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,196 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,196 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,197 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,197 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,198 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,198 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,199 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,199 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,200 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,201 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,201 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,202 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,202 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T02:52:26,203 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,203 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,206 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,209 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,209 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,211 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,212 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,214 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,214 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T02:52:26,215 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,215 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,215 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,216 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,217 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,217 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,218 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,218 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,219 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,219 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,220 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,220 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,221 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,222 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,222 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,223 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,223 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,224 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,224 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,225 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,225 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,226 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,226 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,227 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,228 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,228 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,229 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,229 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,230 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,230 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,231 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,231 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,232 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,232 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,233 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,233 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,234 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,234 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T02:52:26,235 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,235 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,236 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,237 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,238 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,238 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,239 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,240 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,241 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,243 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,243 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T02:52:26,244 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,244 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,245 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,245 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,246 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,246 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,247 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,247 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T02:52:26,248 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,248 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,252 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,253 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,254 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,254 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,255 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,255 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,256 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,257 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,257 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T02:52:26,258 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T02:52:26,258 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T02:52:26,259 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T02:52:26,259 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T02:52:26,261 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T02:52:26,261 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T02:52:26,261 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T02:52:26,262 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T02:52:26,262 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,263 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,263 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,264 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,265 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,266 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,266 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,267 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,268 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,268 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T02:52:26,269 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T02:52:26,269 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T02:52:26,270 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T02:52:26,270 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T02:52:26,271 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T02:52:26,271 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T02:52:26,272 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T02:52:26,272 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T02:52:26,273 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,273 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,277 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,277 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,278 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,279 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,280 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,280 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,281 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,282 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,283 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T02:52:26,283 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T02:52:26,283 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T02:52:26,284 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T02:52:26,284 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T02:52:26,286 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T02:52:26,286 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T02:52:26,286 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T02:52:26,287 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T02:52:26,287 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T02:52:26,288 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T02:52:26,288 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T02:52:26,289 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T02:52:26,290 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T02:52:26,291 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T02:52:26,291 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T02:52:26,308 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T02:52:26,329 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T02:52:26,331 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T02:52:26,331 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T02:52:26,333 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T02:52:26,334 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,334 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,336 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,336 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,337 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,338 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,339 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,340 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,340 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,342 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,345 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,345 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,346 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,347 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,348 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,348 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,349 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,350 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,350 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,351 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T02:52:26,351 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T02:52:26,351 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T02:52:26,352 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T02:52:26,354 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T02:52:26,355 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,356 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,356 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,357 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,357 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,358 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,359 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,359 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,360 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,360 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,361 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,362 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,362 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,363 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T02:52:26,363 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T02:52:26,364 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T02:52:26,364 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T02:52:26,365 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T02:52:26,365 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T02:52:26,366 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T02:52:26,366 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T02:52:26,367 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T02:52:26,367 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T02:52:26,368 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T02:52:26,368 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T02:52:26,369 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T02:52:26,369 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T02:52:26,370 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T02:52:26,370 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T02:52:26,371 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T02:52:26,372 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,372 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,372 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,373 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,373 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,375 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,376 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,377 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,378 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,379 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,381 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,382 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,383 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,384 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T02:52:26,385 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T02:52:26,386 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T02:52:26,386 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T02:52:26,387 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T02:52:26,387 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T02:52:26,388 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T02:52:26,389 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T02:52:26,391 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,391 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,392 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,392 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,393 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,395 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,396 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,398 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,400 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,401 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,403 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,405 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,406 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,408 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,410 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,412 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,413 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,415 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,416 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,418 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,420 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,421 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,423 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,425 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,426 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,428 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,430 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,432 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,433 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,435 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,436 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,438 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,440 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,441 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,443 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,445 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,446 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,448 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,450 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,451 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,453 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,455 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,456 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,458 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,460 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,461 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,463 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,465 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,466 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,468 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,470 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,471 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,473 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,475 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T02:52:26,476 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,477 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,477 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,478 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,479 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,480 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,482 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,484 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,485 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,487 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,489 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,490 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,492 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,494 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,496 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,497 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,499 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,501 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,502 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,504 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,506 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,508 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,510 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,512 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,513 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,515 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,517 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,519 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,520 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,522 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,524 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,525 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,527 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,529 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,530 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,532 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,534 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,535 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,537 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,539 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,541 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,542 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,544 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,546 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,548 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,550 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,552 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,554 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,555 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,557 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,559 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,560 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,562 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,564 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T02:52:26,565 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,566 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,566 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,567 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,567 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,569 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,571 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,573 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,574 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,576 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,578 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,579 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,581 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,583 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,585 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,586 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,588 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,590 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,592 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,594 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,596 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,598 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,600 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,601 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,603 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,605 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,606 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,608 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,610 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,612 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,613 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,615 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,617 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,618 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,620 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,622 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,624 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,625 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,627 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,629 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,630 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,632 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,634 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,635 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,637 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,639 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,641 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,642 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,644 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,646 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,647 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,649 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,651 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,652 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T02:52:26,654 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,654 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,655 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,655 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,656 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,658 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,660 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,661 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,663 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,665 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,666 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,668 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,670 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,671 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,673 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,675 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,676 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,678 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,680 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,682 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,683 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,685 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,687 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,688 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,690 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,692 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,693 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,695 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,697 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,698 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,700 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,702 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,703 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,705 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,707 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,708 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,710 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,712 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,714 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,715 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,717 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,719 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,720 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,722 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,724 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,725 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,727 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,729 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,731 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,732 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,734 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,736 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,737 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,739 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T02:52:26,741 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,741 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,742 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,743 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,743 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,745 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,746 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,746 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T02:52:26,747 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T02:52:26,748 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T02:52:26,748 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T02:52:26,749 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,749 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,750 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,751 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,753 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,754 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,755 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,758 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,759 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,759 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,761 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,763 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,764 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,766 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,768 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,769 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,771 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,773 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,774 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T02:52:26,776 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,776 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,778 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,779 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,780 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,783 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T02:52:26,784 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T02:52:26,784 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T02:52:26,785 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T02:52:26,785 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T02:52:26,787 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T02:52:26,789 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,789 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,790 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,790 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,791 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,792 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,793 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,793 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,794 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,795 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,795 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,796 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,797 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,797 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,798 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,799 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,800 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,800 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T02:52:26,801 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T02:52:26,801 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T02:52:26,802 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T02:52:26,802 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T02:52:26,803 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T02:52:26,803 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T02:52:26,804 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T02:52:26,805 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T02:52:26,805 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T02:52:26,805 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T02:52:26,806 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T02:52:26,806 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T02:52:26,807 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T02:52:26,807 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T02:52:26,808 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T02:52:26,808 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T02:52:26,831 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T02:52:26,832 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T02:52:26,856 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T02:52:26,872 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T02:52:26,873 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T02:52:26,896 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T02:52:26,897 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T02:52:26,897 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T02:52:26,898 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T02:52:26,899 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T02:52:26,900 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T02:52:26,901 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T02:52:26,901 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T02:52:26,903 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T02:52:26,903 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:26,904 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:26,907 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:26,908 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:26,909 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:26,910 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:26,911 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T02:52:26,924 running build_ext 2025-09-09T02:52:27,259 building 'lightdock.mathutil.cython.cutil' extension 2025-09-09T02:52:27,260 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T02:52:27,261 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-09T02:52:27,623 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-09T02:52:27,623 196 | #include "longintrepr.h" 2025-09-09T02:52:27,623 | ^~~~~~~~~~~~~~~ 2025-09-09T02:52:27,623 compilation terminated. 2025-09-09T02:52:27,626 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-09T02:52:27,808 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T02:52:27,820 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T02:52:27,820 exec(compile('"'"''"'"''"'"' 2025-09-09T02:52:27,820 # This is -- a caller that pip uses to run setup.py 2025-09-09T02:52:27,820 # 2025-09-09T02:52:27,820 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T02:52:27,820 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T02:52:27,820 # - It provides a clear error message when setuptools is not installed. 2025-09-09T02:52:27,820 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T02:52:27,820 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T02:52:27,820 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T02:52:27,820 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T02:52:27,820 import os, sys, tokenize, traceback 2025-09-09T02:52:27,820 2025-09-09T02:52:27,820 try: 2025-09-09T02:52:27,820 import setuptools 2025-09-09T02:52:27,820 except ImportError: 2025-09-09T02:52:27,820 print( 2025-09-09T02:52:27,820 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T02:52:27,820 "the build environment with exception:", 2025-09-09T02:52:27,820 file=sys.stderr, 2025-09-09T02:52:27,820 ) 2025-09-09T02:52:27,820 traceback.print_exc() 2025-09-09T02:52:27,820 sys.exit(1) 2025-09-09T02:52:27,820 2025-09-09T02:52:27,820 __file__ = %r 2025-09-09T02:52:27,820 sys.argv[0] = __file__ 2025-09-09T02:52:27,820 2025-09-09T02:52:27,820 if os.path.exists(__file__): 2025-09-09T02:52:27,820 filename = __file__ 2025-09-09T02:52:27,820 with tokenize.open(__file__) as f: 2025-09-09T02:52:27,820 setup_py_code = f.read() 2025-09-09T02:52:27,820 else: 2025-09-09T02:52:27,820 filename = "" 2025-09-09T02:52:27,820 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T02:52:27,820 2025-09-09T02:52:27,820 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T02:52:27,820 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-emfyed8p[/] 2025-09-09T02:52:27,820 [bold magenta]cwd[/]: /tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/ 2025-09-09T02:52:27,820 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-09T02:52:27,821 ERROR: Failed building wheel for lightdock 2025-09-09T02:52:27,822 Running setup.py clean for lightdock 2025-09-09T02:52:27,823 Running command python setup.py clean 2025-09-09T02:52:28,346 /tmp/pip-wheel-yd4l_d6h/lightdock_0cc87c8fb3d74280b6d5e2016dac4aca/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T02:52:28,346 !! 2025-09-09T02:52:28,347 ******************************************************************************** 2025-09-09T02:52:28,347 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T02:52:28,347 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T02:52:28,347 calls to avoid build errors in the future. 2025-09-09T02:52:28,347 ******************************************************************************** 2025-09-09T02:52:28,347 !! 2025-09-09T02:52:28,348 from setuptools.command.test import test as TestCommand 2025-09-09T02:52:28,673 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T02:52:28,673 !! 2025-09-09T02:52:28,673 ******************************************************************************** 2025-09-09T02:52:28,673 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T02:52:28,673 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T02:52:28,673 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T02:52:28,673 or your builds will no longer be supported. 2025-09-09T02:52:28,673 ******************************************************************************** 2025-09-09T02:52:28,674 !! 2025-09-09T02:52:28,674 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T02:52:29,509 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T02:52:29,509 !! 2025-09-09T02:52:29,509 ******************************************************************************** 2025-09-09T02:52:29,510 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T02:52:29,510 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T02:52:29,510 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T02:52:29,510 ******************************************************************************** 2025-09-09T02:52:29,510 !! 2025-09-09T02:52:29,510 self._finalize_license_expression() 2025-09-09T02:52:29,586 running clean 2025-09-09T02:52:29,734 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T02:52:29,734 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T02:52:29,820 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T02:52:29,820 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T02:52:29,820 removing 'build' 2025-09-09T02:52:29,961 Failed to build lightdock 2025-09-09T02:52:29,961 ERROR: Failed to build one or more wheels 2025-09-09T02:52:29,962 Exception information: 2025-09-09T02:52:29,962 Traceback (most recent call last): 2025-09-09T02:52:29,962 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T02:52:29,962 status = _inner_run() 2025-09-09T02:52:29,962 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T02:52:29,962 return self.run(options, args) 2025-09-09T02:52:29,962 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T02:52:29,962 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T02:52:29,962 return func(self, options, args) 2025-09-09T02:52:29,962 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T02:52:29,962 raise CommandError("Failed to build one or more wheels") 2025-09-09T02:52:29,962 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T02:52:29,966 Removed build tracker: '/tmp/pip-build-tracker-56dk377j'