2025-09-09T04:42:52,216 Created temporary directory: /tmp/pip-build-tracker-f5_2yyo0
2025-09-09T04:42:52,217 Initialized build tracking at /tmp/pip-build-tracker-f5_2yyo0
2025-09-09T04:42:52,217 Created build tracker: /tmp/pip-build-tracker-f5_2yyo0
2025-09-09T04:42:52,217 Entered build tracker: /tmp/pip-build-tracker-f5_2yyo0
2025-09-09T04:42:52,217 Created temporary directory: /tmp/pip-wheel-brzyb2y8
2025-09-09T04:42:52,221 Created temporary directory: /tmp/pip-ephem-wheel-cache-0wd7yjog
2025-09-09T04:42:52,279 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-09T04:42:52,281 2 location(s) to search for versions of regulon-enrichment:
2025-09-09T04:42:52,281 * https://pypi.org/simple/regulon-enrichment/
2025-09-09T04:42:52,281 * https://www.piwheels.org/simple/regulon-enrichment/
2025-09-09T04:42:52,281 Fetching project page and analyzing links: https://pypi.org/simple/regulon-enrichment/
2025-09-09T04:42:52,282 Getting page https://pypi.org/simple/regulon-enrichment/
2025-09-09T04:42:52,283 Found index url https://pypi.org/simple/
2025-09-09T04:42:52,352 Fetched page https://pypi.org/simple/regulon-enrichment/ as application/vnd.pypi.simple.v1+json
2025-09-09T04:42:52,357   Found link https://files.pythonhosted.org/packages/d8/af/2922bc7a0aca32771f315829a25463352f3a67fbc00f3bb24706ec2ab51b/regulon-enrichment-0.0.2a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.0.2a0
2025-09-09T04:42:52,357   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/cc/59/87ad63b1ab81b4b87472b35003597c6c921f1faa890df1bc0bc6ddffcbea/regulon_enrichment-0.0.2a0-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,358   Found link https://files.pythonhosted.org/packages/d8/57/6518dbade77516773278cd631a709e2392bf48672e51d903fc54da8b0a2e/regulon-enrichment-0.0.2b0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.0.2b0
2025-09-09T04:42:52,358   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/34/00/be658aaa7805272368451ef95f5faabedc887a8c9376f8b2496c721a1b5a/regulon_enrichment-0.0.2b0-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,358   Found link https://files.pythonhosted.org/packages/08/46/456506e9129aa9d63ba5c5595adefe0883e7e2ca24eeb3a249817e63e536/regulon-enrichment-0.3.0a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.0a0
2025-09-09T04:42:52,358   Found link https://files.pythonhosted.org/packages/00/20/8b9e9f5f88fda7b4e8d5802ad5a359fa4f020fd195b132193b2f19e717d5/regulon-enrichment-0.3.1a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.1a0
2025-09-09T04:42:52,359   Found link https://files.pythonhosted.org/packages/1d/b7/91c9d92f06cbf4e8edd6cbf4a8f9ff0735041f6e5d21920d85459ddb0753/regulon-enrichment-0.3.2a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.2a0
2025-09-09T04:42:52,359   Found link https://files.pythonhosted.org/packages/5d/b1/ef61878c9871fc881776893efa8b6725e0e77d0479adf777479445dbd8f6/regulon-enrichment-0.3.3a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.3a0
2025-09-09T04:42:52,359   Found link https://files.pythonhosted.org/packages/41/30/e3c66692d1cc0c70e14cd92293cec19a40e2938f76cf86ce1b44e043fab9/regulon-enrichment-0.3.4a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.4a0
2025-09-09T04:42:52,359   Found link https://files.pythonhosted.org/packages/06/e5/97005a9475ffd8a0b8951e46e4179046ef5b34fdfcb460fa921ef680f2af/regulon-enrichment-0.3.5a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.5a0
2025-09-09T04:42:52,359   Found link https://files.pythonhosted.org/packages/f5/bf/c9fbbf7b94bba641d6d112d44bcee45a95bf2c5b5a36b51996acb1f6a325/regulon-enrichment-0.3.6a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.6a0
2025-09-09T04:42:52,360   Found link https://files.pythonhosted.org/packages/66/c7/13ef0926782d32b5174cedd31408b4b42639951c6bc7b9f167305d44976d/regulon-enrichment-0.3.7a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.7a0
2025-09-09T04:42:52,360   Found link https://files.pythonhosted.org/packages/bc/91/fcbc4838a195ae9070c531b18673a49054e6ab4929abc3946a8c04928511/regulon-enrichment-0.3.8a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.8a0
2025-09-09T04:42:52,360   Found link https://files.pythonhosted.org/packages/44/65/cd3cf103e6f9aba9d67bd4d489d4ca2b8f19b7967a1318979f8f09c00a91/regulon-enrichment-0.3.9a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.9a0
2025-09-09T04:42:52,360   Found link https://files.pythonhosted.org/packages/59/39/93bb5a45d5b67ec7d212ac0b283bb2bc8a60a4fb7bc7f6687eed7c3c8d89/regulon-enrichment-0.3.10a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.10a0
2025-09-09T04:42:52,361   Found link https://files.pythonhosted.org/packages/8d/d8/606d5e16294cfb7810ddb233cca34348ff9ab504d995350300d2e5c255fe/regulon-enrichment-0.3.11a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.11a0
2025-09-09T04:42:52,361   Found link https://files.pythonhosted.org/packages/ec/da/43bcfb91fad570ea037ea952618968361a9b26f660d68c994d2329e4e856/regulon-enrichment-0.3.12a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.3.12a0
2025-09-09T04:42:52,361   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/76/6c/61b000b69f7f31bba2aa908b8b90d8a3a5c2200c9f9313cc318274cec74a/regulon_enrichment-0.3.12a0-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,361   Found link https://files.pythonhosted.org/packages/d7/4d/48e64ba4deec03c1a65e865bc42b8a07562b86ab3a180527841b4d64c38b/regulon-enrichment-0.4a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.4a0
2025-09-09T04:42:52,361   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/ed/8f/ccfb6b4b0d5c21ef546fefa324ab81ae4976722be1e1cc563cda4b6b68cb/regulon_enrichment-0.4a0-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,362   Found link https://files.pythonhosted.org/packages/2a/aa/2075c0eaa89ac0b940962e8605a3e18010a8ca1ddae152f4922953f659d2/regulon-enrichment-0.5a0.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6), version: 0.5a0
2025-09-09T04:42:52,362   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/41/62/a4bcff135a9eebeae28fd2ff2901915861a81179f95e9ef0ea14c203a72a/regulon_enrichment-0.5a0-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,362   Link requires a different Python (3.13.5 not in: '==3.6'): https://files.pythonhosted.org/packages/19/d0/ff63009cd0459e1783070a6ce7a8d3531a4460a024042b79faabd03f8e80/regulon-enrichment-0.5a1.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6)
2025-09-09T04:42:52,363   Skipping link: 0.5a1 Requires-Python ==3.6: https://files.pythonhosted.org/packages/19/d0/ff63009cd0459e1783070a6ce7a8d3531a4460a024042b79faabd03f8e80/regulon-enrichment-0.5a1.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6)
2025-09-09T04:42:52,363   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/c5/d3/056e2dfc141ed198cf6ab6e05c87d3bb2df3243c3dd2f4e7c3144c7d8c39/regulon_enrichment-0.5a1-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6)
2025-09-09T04:42:52,363   Link requires a different Python (3.13.5 not in: '==3.6.13'): https://files.pythonhosted.org/packages/da/18/7285fb029fa3343e8ea72a92ea2b7f0ac74c61638ff7c81d1191160086fb/regulon-enrichment-0.5a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Skipping link: 0.5a2 Requires-Python ==3.6.13: https://files.pythonhosted.org/packages/da/18/7285fb029fa3343e8ea72a92ea2b7f0ac74c61638ff7c81d1191160086fb/regulon-enrichment-0.5a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/ba/c4/010cc1aaf8ca40929003a42629cc5c7ac0820b58bf69e441a8dc03053314/regulon_enrichment-0.5a2-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Link requires a different Python (3.13.5 not in: '==3.6.13'): https://files.pythonhosted.org/packages/dd/ad/a821f378b0114e58e0bedc7553784c57d0ecf7fac98f69f337ff90bd4da2/regulon-enrichment-0.6a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Skipping link: 0.6a2 Requires-Python ==3.6.13: https://files.pythonhosted.org/packages/dd/ad/a821f378b0114e58e0bedc7553784c57d0ecf7fac98f69f337ff90bd4da2/regulon-enrichment-0.6a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/e8/1d/3a9c79b22866fc0ab28f7f34f2e915d0c863fa7c15d19605a59f27b8cdb0/regulon_enrichment-0.6a2-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,364   Link requires a different Python (3.13.5 not in: '==3.6.13'): https://files.pythonhosted.org/packages/a8/38/77b30cb5225bd5835eb14e428f1a92f4c8d4b2d27f2df6c8a10bc24707ea/regulon-enrichment-0.7a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,365   Skipping link: 0.7a2 Requires-Python ==3.6.13: https://files.pythonhosted.org/packages/a8/38/77b30cb5225bd5835eb14e428f1a92f4c8d4b2d27f2df6c8a10bc24707ea/regulon-enrichment-0.7a2.tar.gz (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,365   Skipping link: No binaries permitted for regulon-enrichment: https://files.pythonhosted.org/packages/c0/62/04d9d3505a170900d0affed8f4be7f379973ed070c137c62eb589ed26766/regulon_enrichment-0.7a2-py3-none-any.whl (from https://pypi.org/simple/regulon-enrichment/) (requires-python:==3.6.13)
2025-09-09T04:42:52,365 Fetching project page and analyzing links: https://www.piwheels.org/simple/regulon-enrichment/
2025-09-09T04:42:52,365 Getting page https://www.piwheels.org/simple/regulon-enrichment/
2025-09-09T04:42:52,366 Found index url https://www.piwheels.org/simple/
2025-09-09T04:42:52,455 Fetched page https://www.piwheels.org/simple/regulon-enrichment/ as text/html
2025-09-09T04:42:52,459   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.5a0-py3-none-any.whl#sha256=ab2ae92d0b54e5b06155bcd1ce3eb5066655787e50ce0108893fa4591109330a (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.4a0-py3-none-any.whl#sha256=e0c6df21cf0eb56f2e8c260c3c9c26bd6769e35d6bcf8f57af7c7e50e3fb2c72 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.12a0-py3-none-any.whl#sha256=b98486d4b3d0f2e072720b1aeca34d0e24f8501538ac34ed84b77a86f1c949b1 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.11a0-py3-none-any.whl#sha256=32b816eecc7581707f8ae221abb23aa2767b7b9072e47efc1a03d1efdd88fec1 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.10a0-py3-none-any.whl#sha256=e8f5bde6b111963286c44cc9ba0fae7fc337522b290e39cf9e8bc98e804db191 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.9a0-py3-none-any.whl#sha256=79aaace5b9529a11848474c31be73ae89045a0836c83d01330bef0db11894c08 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,460   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.7a0-py3-none-any.whl#sha256=7641912d987ad5c290eb0bc884501944f7fa13d7a3c023b32de20e58413a3f9e (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.6a0-py3-none-any.whl#sha256=248dc415b247accf80313e0739caa34517589671b95fb01cf7af5d0bbc0dd09e (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.5a0-py3-none-any.whl#sha256=91493a7425589280e6666fe3938065c74dd9200257163bb765d9a564d30c0346 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.4a0-py3-none-any.whl#sha256=02cad11487c848d17e913f45293a528ee17929a22cb3fc2eecfc0263b10b6721 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.3a0-py3-none-any.whl#sha256=a610f959ba09b041d3ba3c67f00fb986511bfe3b6696a8b87f233de227d345e3 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.1a0-py3-none-any.whl#sha256=db247b5e77a1d4a01caeac93fe3984a20635abf109993e87b73d33d0811e3255 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.3.0a0-py3-none-any.whl#sha256=8a7bd2f5de09158aee57b31047b40e73b6f3a596fd859486129da913d590f6a2 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,461   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.0.2b0-py3-none-any.whl#sha256=0534ad66859ddcf7d5dc1c7ad37337c2d56899f68f1b95793bd1f6c9d0c8f6f3 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,462   Skipping link: No binaries permitted for regulon-enrichment: https://archive1.piwheels.org/simple/regulon-enrichment/regulon_enrichment-0.0.2a0-py3-none-any.whl#sha256=d914ff5b553f5172b68efff7e5b3319236c65d7c2b19b3741321f23ec97801c3 (from https://www.piwheels.org/simple/regulon-enrichment/) (requires-python:>=3.6)
2025-09-09T04:42:52,462 Skipping link: not a file: https://www.piwheels.org/simple/regulon-enrichment/
2025-09-09T04:42:52,462 Skipping link: not a file: https://pypi.org/simple/regulon-enrichment/
2025-09-09T04:42:52,489 Given no hashes to check 1 links for project 'regulon-enrichment': discarding no candidates
2025-09-09T04:42:52,490 Collecting regulon-enrichment==0.3.8a0
2025-09-09T04:42:52,491   Created temporary directory: /tmp/pip-unpack-lh02q3s1
2025-09-09T04:42:52,960   Downloading regulon-enrichment-0.3.8a0.tar.gz (48.9 MB)
2025-09-09T04:43:02,699   Added regulon-enrichment==0.3.8a0 from https://files.pythonhosted.org/packages/bc/91/fcbc4838a195ae9070c531b18673a49054e6ab4929abc3946a8c04928511/regulon-enrichment-0.3.8a0.tar.gz to build tracker '/tmp/pip-build-tracker-f5_2yyo0'
2025-09-09T04:43:02,701   Running setup.py (path:/tmp/pip-wheel-brzyb2y8/regulon-enrichment_096452d6250648f8a63277718694aa7f/setup.py) egg_info for package regulon-enrichment
2025-09-09T04:43:02,701   Created temporary directory: /tmp/pip-pip-egg-info-lxc3j83c
2025-09-09T04:43:02,701   Preparing metadata (setup.py): started
2025-09-09T04:43:02,702   Running command python setup.py egg_info
2025-09-09T04:43:03,781   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T04:43:03,781   !!

2025-09-09T04:43:03,781           ********************************************************************************
2025-09-09T04:43:03,781           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T04:43:03,782           License :: OSI Approved :: MIT License

2025-09-09T04:43:03,782           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T04:43:03,782           ********************************************************************************

2025-09-09T04:43:03,782   !!
2025-09-09T04:43:03,782     self._finalize_license_expression()
2025-09-09T04:43:03,857   running egg_info
2025-09-09T04:43:03,935   creating /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info
2025-09-09T04:43:03,935   writing /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/PKG-INFO
2025-09-09T04:43:03,936   /usr/local/lib/python3.13/dist-packages/setuptools/_core_metadata.py:163: SetuptoolsDeprecationWarning: Invalid config.
2025-09-09T04:43:03,936   !!

2025-09-09T04:43:03,937           ********************************************************************************
2025-09-09T04:43:03,937           newlines are not allowed in `summary` and will break in the future
2025-09-09T04:43:03,937           ********************************************************************************

2025-09-09T04:43:03,937   !!
2025-09-09T04:43:03,937     write_field('Summary', single_line(summary))
2025-09-09T04:43:03,937   writing dependency_links to /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/dependency_links.txt
2025-09-09T04:43:03,937   writing entry points to /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/entry_points.txt
2025-09-09T04:43:03,938   writing requirements to /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/requires.txt
2025-09-09T04:43:03,938   writing top-level names to /tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/top_level.txt
2025-09-09T04:43:03,939   writing manifest file '/tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/SOURCES.txt'
2025-09-09T04:43:04,171   reading manifest file '/tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/SOURCES.txt'
2025-09-09T04:43:04,174   writing manifest file '/tmp/pip-pip-egg-info-lxc3j83c/regulon_enrichment.egg-info/SOURCES.txt'
2025-09-09T04:43:04,285   Preparing metadata (setup.py): finished with status 'done'
2025-09-09T04:43:04,289   Source in /tmp/pip-wheel-brzyb2y8/regulon-enrichment_096452d6250648f8a63277718694aa7f has version 0.3.8a0, which satisfies requirement regulon-enrichment==0.3.8a0 from https://files.pythonhosted.org/packages/bc/91/fcbc4838a195ae9070c531b18673a49054e6ab4929abc3946a8c04928511/regulon-enrichment-0.3.8a0.tar.gz
2025-09-09T04:43:04,289   Removed regulon-enrichment==0.3.8a0 from https://files.pythonhosted.org/packages/bc/91/fcbc4838a195ae9070c531b18673a49054e6ab4929abc3946a8c04928511/regulon-enrichment-0.3.8a0.tar.gz from build tracker '/tmp/pip-build-tracker-f5_2yyo0'
2025-09-09T04:43:04,295 Created temporary directory: /tmp/pip-unpack-mfw3vb80
2025-09-09T04:43:04,295 Created temporary directory: /tmp/pip-unpack-4qtj7m4r
2025-09-09T04:43:04,296 Building wheels for collected packages: regulon-enrichment
2025-09-09T04:43:04,297   Created temporary directory: /tmp/pip-wheel-b7yz_r1f
2025-09-09T04:43:04,297   DEPRECATION: Building 'regulon-enrichment' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'regulon-enrichment'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-09T04:43:04,298   Building wheel for regulon-enrichment (setup.py): started
2025-09-09T04:43:04,299   Destination directory: /tmp/pip-wheel-b7yz_r1f
2025-09-09T04:43:04,299   Running command python setup.py bdist_wheel
2025-09-09T04:43:05,375   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T04:43:05,375   !!

2025-09-09T04:43:05,375           ********************************************************************************
2025-09-09T04:43:05,375           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T04:43:05,376           License :: OSI Approved :: MIT License

2025-09-09T04:43:05,376           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T04:43:05,376           ********************************************************************************

2025-09-09T04:43:05,376   !!
2025-09-09T04:43:05,376     self._finalize_license_expression()
2025-09-09T04:43:05,376   running bdist_wheel
2025-09-09T04:43:05,739   running build
2025-09-09T04:43:05,739   running build_py
2025-09-09T04:43:05,815   creating build/lib/enricher
2025-09-09T04:43:05,816   copying enricher/enrich.py -> build/lib/enricher
2025-09-09T04:43:05,817   copying enricher/__init__.py -> build/lib/enricher
2025-09-09T04:43:05,817   creating build/lib/data
2025-09-09T04:43:05,818   copying data/__init__.py -> build/lib/data
2025-09-09T04:43:05,818   creating build/lib/enricher/regulon
2025-09-09T04:43:05,818   copying enricher/regulon/regulon_utils.py -> build/lib/enricher/regulon
2025-09-09T04:43:05,819   copying enricher/regulon/regulon_enrichment.py -> build/lib/enricher/regulon
2025-09-09T04:43:05,820   copying enricher/regulon/__init__.py -> build/lib/enricher/regulon
2025-09-09T04:43:05,820   creating build/lib/enricher/features
2025-09-09T04:43:05,821   copying enricher/features/expression_utils.py -> build/lib/enricher/features
2025-09-09T04:43:05,821   copying enricher/features/__init__.py -> build/lib/enricher/features
2025-09-09T04:43:05,899   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-09T04:43:05,899   !!

2025-09-09T04:43:05,899           ********************************************************************************
2025-09-09T04:43:05,899           Please avoid running ``setup.py`` directly.
2025-09-09T04:43:05,899           Instead, use pypa/build, pypa/installer or other
2025-09-09T04:43:05,899           standards-based tools.

2025-09-09T04:43:05,899           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-09T04:43:05,900           or your builds will no longer be supported.

2025-09-09T04:43:05,900           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-09T04:43:05,900           ********************************************************************************

2025-09-09T04:43:05,900   !!
2025-09-09T04:43:05,900     self.initialize_options()
2025-09-09T04:43:05,972   installing to build/bdist.linux-armv7l/wheel
2025-09-09T04:43:05,972   running install
2025-09-09T04:43:05,994   running install_lib
2025-09-09T04:43:06,065   creating build/bdist.linux-armv7l/wheel
2025-09-09T04:43:06,066   creating build/bdist.linux-armv7l/wheel/data
2025-09-09T04:43:06,066   copying build/lib/data/__init__.py -> build/bdist.linux-armv7l/wheel/./data
2025-09-09T04:43:06,067   creating build/bdist.linux-armv7l/wheel/enricher
2025-09-09T04:43:06,067   creating build/bdist.linux-armv7l/wheel/enricher/features
2025-09-09T04:43:06,067   copying build/lib/enricher/features/__init__.py -> build/bdist.linux-armv7l/wheel/./enricher/features
2025-09-09T04:43:06,068   copying build/lib/enricher/features/expression_utils.py -> build/bdist.linux-armv7l/wheel/./enricher/features
2025-09-09T04:43:06,068   creating build/bdist.linux-armv7l/wheel/enricher/regulon
2025-09-09T04:43:06,068   copying build/lib/enricher/regulon/__init__.py -> build/bdist.linux-armv7l/wheel/./enricher/regulon
2025-09-09T04:43:06,069   copying build/lib/enricher/regulon/regulon_enrichment.py -> build/bdist.linux-armv7l/wheel/./enricher/regulon
2025-09-09T04:43:06,069   copying build/lib/enricher/regulon/regulon_utils.py -> build/bdist.linux-armv7l/wheel/./enricher/regulon
2025-09-09T04:43:06,070   copying build/lib/enricher/__init__.py -> build/bdist.linux-armv7l/wheel/./enricher
2025-09-09T04:43:06,070   copying build/lib/enricher/enrich.py -> build/bdist.linux-armv7l/wheel/./enricher
2025-09-09T04:43:06,070   running install_data
2025-09-09T04:43:06,145   creating build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data
2025-09-09T04:43:06,146   creating build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data/data
2025-09-09T04:43:06,146   copying data/Homo_sapiens.GRCh38.95.gtf.gz -> build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data/data
2025-09-09T04:43:06,300   copying data/Mus_musculus.GRCm38.95.gtf.gz -> build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data/data
2025-09-09T04:43:06,301   copying data/PathwayCommons9.All.hgnc.sif.gz -> build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data/data
2025-09-09T04:43:06,322   copying data/primary_intx_regulon.pkl -> build/bdist.linux-armv7l/wheel/regulon_enrichment-0.3.8a0.data/data/data
2025-09-09T04:43:06,328   error: can't copy 'secondary_intx_regulon.pkl': doesn't exist or not a regular file
2025-09-09T04:43:06,439   ERROR: python setup.py bdist_wheel exited with 1
2025-09-09T04:43:06,451   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-09T04:43:06,451   exec(compile('"'"''"'"''"'"'
2025-09-09T04:43:06,451   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-09T04:43:06,451   #
2025-09-09T04:43:06,451   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-09T04:43:06,451   #   import from `distutils.core` to work with newer packaging standards.
2025-09-09T04:43:06,451   # - It provides a clear error message when setuptools is not installed.
2025-09-09T04:43:06,451   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-09T04:43:06,451   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-09T04:43:06,451   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-09T04:43:06,451   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-09T04:43:06,451   import os, sys, tokenize, traceback
2025-09-09T04:43:06,451   
2025-09-09T04:43:06,451   try:
2025-09-09T04:43:06,451       import setuptools
2025-09-09T04:43:06,451   except ImportError:
2025-09-09T04:43:06,451       print(
2025-09-09T04:43:06,451           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-09T04:43:06,451           "the build environment with exception:",
2025-09-09T04:43:06,451           file=sys.stderr,
2025-09-09T04:43:06,451       )
2025-09-09T04:43:06,451       traceback.print_exc()
2025-09-09T04:43:06,451       sys.exit(1)
2025-09-09T04:43:06,451   
2025-09-09T04:43:06,451   __file__ = %r
2025-09-09T04:43:06,451   sys.argv[0] = __file__
2025-09-09T04:43:06,451   
2025-09-09T04:43:06,451   if os.path.exists(__file__):
2025-09-09T04:43:06,451       filename = __file__
2025-09-09T04:43:06,451       with tokenize.open(__file__) as f:
2025-09-09T04:43:06,451           setup_py_code = f.read()
2025-09-09T04:43:06,451   else:
2025-09-09T04:43:06,451       filename = "<auto-generated setuptools caller>"
2025-09-09T04:43:06,451       setup_py_code = "from setuptools import setup; setup()"
2025-09-09T04:43:06,451   
2025-09-09T04:43:06,451   exec(compile(setup_py_code, filename, "exec"))
2025-09-09T04:43:06,451   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-brzyb2y8/regulon-enrichment_096452d6250648f8a63277718694aa7f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-b7yz_r1f[/]
2025-09-09T04:43:06,452   [bold magenta]cwd[/]: /tmp/pip-wheel-brzyb2y8/regulon-enrichment_096452d6250648f8a63277718694aa7f/
2025-09-09T04:43:06,452   Building wheel for regulon-enrichment (setup.py): finished with status 'error'
2025-09-09T04:43:06,453   ERROR: Failed building wheel for regulon-enrichment
2025-09-09T04:43:06,453   Running setup.py clean for regulon-enrichment
2025-09-09T04:43:06,454   Running command python setup.py clean
2025-09-09T04:43:07,544   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T04:43:07,544   !!

2025-09-09T04:43:07,545           ********************************************************************************
2025-09-09T04:43:07,545           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T04:43:07,545           License :: OSI Approved :: MIT License

2025-09-09T04:43:07,545           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T04:43:07,545           ********************************************************************************

2025-09-09T04:43:07,545   !!
2025-09-09T04:43:07,546     self._finalize_license_expression()
2025-09-09T04:43:07,622   running clean
2025-09-09T04:43:07,774   removing 'build/lib' (and everything under it)
2025-09-09T04:43:07,774   removing 'build/bdist.linux-armv7l' (and everything under it)
2025-09-09T04:43:07,791   'build/scripts-3.13' does not exist -- can't clean it
2025-09-09T04:43:07,791   removing 'build'
2025-09-09T04:43:07,901 Failed to build regulon-enrichment
2025-09-09T04:43:07,902 ERROR: Failed to build one or more wheels
2025-09-09T04:43:07,903 Exception information:
2025-09-09T04:43:07,903 Traceback (most recent call last):
2025-09-09T04:43:07,903   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-09T04:43:07,903     status = _inner_run()
2025-09-09T04:43:07,903   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-09T04:43:07,903     return self.run(options, args)
2025-09-09T04:43:07,903            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-09T04:43:07,903   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-09T04:43:07,903     return func(self, options, args)
2025-09-09T04:43:07,903   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-09T04:43:07,903     raise CommandError("Failed to build one or more wheels")
2025-09-09T04:43:07,903 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-09T04:43:07,907 Removed build tracker: '/tmp/pip-build-tracker-f5_2yyo0'