2025-09-09T04:51:53,633 Created temporary directory: /tmp/pip-build-tracker-byg8tima 2025-09-09T04:51:53,633 Initialized build tracking at /tmp/pip-build-tracker-byg8tima 2025-09-09T04:51:53,634 Created build tracker: /tmp/pip-build-tracker-byg8tima 2025-09-09T04:51:53,634 Entered build tracker: /tmp/pip-build-tracker-byg8tima 2025-09-09T04:51:53,634 Created temporary directory: /tmp/pip-wheel-7uzmswc6 2025-09-09T04:51:53,637 Created temporary directory: /tmp/pip-ephem-wheel-cache-7oivu0cq 2025-09-09T04:51:53,704 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T04:51:53,706 2 location(s) to search for versions of lightdock: 2025-09-09T04:51:53,706 * https://pypi.org/simple/lightdock/ 2025-09-09T04:51:53,706 * https://www.piwheels.org/simple/lightdock/ 2025-09-09T04:51:53,706 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-09T04:51:53,707 Getting page https://pypi.org/simple/lightdock/ 2025-09-09T04:51:53,708 Found index url https://pypi.org/simple/ 2025-09-09T04:51:53,777 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-09T04:51:53,782 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,783 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-09T04:51:53,783 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,783 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-09T04:51:53,784 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,784 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-09T04:51:53,784 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,919 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,919 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,920 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T04:51:53,921 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-09T04:51:53,921 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-09T04:51:53,946 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-09T04:51:53,947 Collecting lightdock==0.8.1b1 2025-09-09T04:51:53,948 Created temporary directory: /tmp/pip-unpack-l_598wkk 2025-09-09T04:51:54,503 Downloading lightdock-0.8.1b1.tar.gz (33.0 MB) 2025-09-09T04:52:03,543 Added lightdock==0.8.1b1 from https://files.pythonhosted.org/packages/39/72/e874ec3afa19c0d5c819d15a9da3965d2d39aa14b956290265a9ecda5fa8/lightdock-0.8.1b1.tar.gz to build tracker '/tmp/pip-build-tracker-byg8tima' 2025-09-09T04:52:03,544 Running setup.py (path:/tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/setup.py) egg_info for package lightdock 2025-09-09T04:52:03,544 Created temporary directory: /tmp/pip-pip-egg-info-b8pjhh5e 2025-09-09T04:52:03,545 Preparing metadata (setup.py): started 2025-09-09T04:52:03,545 Running command python setup.py egg_info 2025-09-09T04:52:04,047 /tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T04:52:04,047 !! 2025-09-09T04:52:04,047 ******************************************************************************** 2025-09-09T04:52:04,047 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T04:52:04,047 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T04:52:04,048 calls to avoid build errors in the future. 2025-09-09T04:52:04,048 ******************************************************************************** 2025-09-09T04:52:04,048 !! 2025-09-09T04:52:04,048 from setuptools.command.test import test as TestCommand 2025-09-09T04:52:04,447 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T04:52:04,447 !! 2025-09-09T04:52:04,448 ******************************************************************************** 2025-09-09T04:52:04,448 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T04:52:04,448 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T04:52:04,448 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T04:52:04,448 or your builds will no longer be supported. 2025-09-09T04:52:04,448 ******************************************************************************** 2025-09-09T04:52:04,449 !! 2025-09-09T04:52:04,449 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T04:52:07,477 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T04:52:07,477 !! 2025-09-09T04:52:07,477 ******************************************************************************** 2025-09-09T04:52:07,477 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T04:52:07,478 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T04:52:07,478 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T04:52:07,478 ******************************************************************************** 2025-09-09T04:52:07,478 !! 2025-09-09T04:52:07,478 self._finalize_license_expression() 2025-09-09T04:52:07,550 running egg_info 2025-09-09T04:52:07,624 creating /tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info 2025-09-09T04:52:07,624 writing /tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/PKG-INFO 2025-09-09T04:52:07,625 writing dependency_links to /tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/dependency_links.txt 2025-09-09T04:52:07,626 writing requirements to /tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/requires.txt 2025-09-09T04:52:07,626 writing top-level names to /tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/top_level.txt 2025-09-09T04:52:07,627 writing manifest file '/tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/SOURCES.txt' 2025-09-09T04:52:08,027 reading manifest file '/tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/SOURCES.txt' 2025-09-09T04:52:08,028 reading manifest template 'MANIFEST.in' 2025-09-09T04:52:08,105 adding license file 'LICENSE' 2025-09-09T04:52:08,144 writing manifest file '/tmp/pip-pip-egg-info-b8pjhh5e/lightdock.egg-info/SOURCES.txt' 2025-09-09T04:52:08,282 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T04:52:08,288 Source in /tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0 has version 0.8.1b1, which satisfies requirement lightdock==0.8.1b1 from https://files.pythonhosted.org/packages/39/72/e874ec3afa19c0d5c819d15a9da3965d2d39aa14b956290265a9ecda5fa8/lightdock-0.8.1b1.tar.gz 2025-09-09T04:52:08,288 Removed lightdock==0.8.1b1 from https://files.pythonhosted.org/packages/39/72/e874ec3afa19c0d5c819d15a9da3965d2d39aa14b956290265a9ecda5fa8/lightdock-0.8.1b1.tar.gz from build tracker '/tmp/pip-build-tracker-byg8tima' 2025-09-09T04:52:08,295 Created temporary directory: /tmp/pip-unpack-lcumizae 2025-09-09T04:52:08,295 Created temporary directory: /tmp/pip-unpack-h_ob2a79 2025-09-09T04:52:08,295 Building wheels for collected packages: lightdock 2025-09-09T04:52:08,297 Created temporary directory: /tmp/pip-wheel-2u_8stnh 2025-09-09T04:52:08,297 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T04:52:08,298 Building wheel for lightdock (setup.py): started 2025-09-09T04:52:08,299 Destination directory: /tmp/pip-wheel-2u_8stnh 2025-09-09T04:52:08,299 Running command python setup.py bdist_wheel 2025-09-09T04:52:08,805 /tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T04:52:08,806 !! 2025-09-09T04:52:08,806 ******************************************************************************** 2025-09-09T04:52:08,806 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T04:52:08,806 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T04:52:08,806 calls to avoid build errors in the future. 2025-09-09T04:52:08,806 ******************************************************************************** 2025-09-09T04:52:08,807 !! 2025-09-09T04:52:08,807 from setuptools.command.test import test as TestCommand 2025-09-09T04:52:09,154 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T04:52:09,154 !! 2025-09-09T04:52:09,154 ******************************************************************************** 2025-09-09T04:52:09,154 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T04:52:09,154 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T04:52:09,155 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T04:52:09,155 or your builds will no longer be supported. 2025-09-09T04:52:09,155 ******************************************************************************** 2025-09-09T04:52:09,155 !! 2025-09-09T04:52:09,155 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T04:52:09,990 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T04:52:09,990 !! 2025-09-09T04:52:09,990 ******************************************************************************** 2025-09-09T04:52:09,990 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T04:52:09,991 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T04:52:09,991 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T04:52:09,991 ******************************************************************************** 2025-09-09T04:52:09,991 !! 2025-09-09T04:52:09,991 self._finalize_license_expression() 2025-09-09T04:52:09,992 running bdist_wheel 2025-09-09T04:52:10,358 running build 2025-09-09T04:52:10,358 running build_py 2025-09-09T04:52:10,438 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T04:52:10,439 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T04:52:10,439 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T04:52:10,440 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T04:52:10,441 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,442 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,442 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,443 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,444 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,445 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,445 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T04:52:10,446 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T04:52:10,447 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T04:52:10,448 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,448 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,449 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,450 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,451 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,451 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,452 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,453 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,453 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T04:52:10,454 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T04:52:10,455 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T04:52:10,456 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T04:52:10,456 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T04:52:10,458 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T04:52:10,458 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T04:52:10,459 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T04:52:10,460 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T04:52:10,461 creating build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T04:52:10,461 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T04:52:10,462 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T04:52:10,463 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T04:52:10,464 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/rotamer 2025-09-09T04:52:10,465 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,465 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,466 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,467 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,468 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,469 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,470 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T04:52:10,471 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T04:52:10,471 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T04:52:10,472 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T04:52:10,473 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T04:52:10,473 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T04:52:10,474 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T04:52:10,475 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T04:52:10,476 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T04:52:10,476 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T04:52:10,477 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T04:52:10,478 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T04:52:10,478 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T04:52:10,479 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,480 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,481 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,481 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,482 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,483 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,484 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,484 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,485 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T04:52:10,486 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T04:52:10,486 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T04:52:10,487 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T04:52:10,488 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T04:52:10,489 copying lightdock/test/util/test_parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T04:52:10,489 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T04:52:10,490 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T04:52:10,491 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,492 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,492 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,493 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,494 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,495 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,495 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,496 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T04:52:10,497 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,498 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,498 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,499 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,500 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,501 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,501 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,502 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,503 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,503 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,504 copying lightdock/test/scoring/test_ddna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,505 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T04:52:10,506 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T04:52:10,506 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T04:52:10,507 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer 2025-09-09T04:52:10,508 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,508 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,509 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,510 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,511 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,512 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,512 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T04:52:10,513 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T04:52:10,514 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T04:52:10,514 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T04:52:10,515 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,516 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,517 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,517 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,518 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,519 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,520 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,520 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T04:52:10,521 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,522 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,522 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,523 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,524 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,525 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,525 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,526 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,527 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,528 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,528 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T04:52:10,529 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T04:52:10,530 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T04:52:10,531 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T04:52:10,532 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,532 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,533 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,534 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,534 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,535 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,536 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,537 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,537 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,538 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,539 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,539 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,540 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,541 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T04:52:10,542 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,542 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,543 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,544 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,545 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,545 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,546 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,547 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,547 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,548 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T04:52:10,549 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,550 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,551 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,551 copying lightdock/test/bin/post/test_lgd_create_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,552 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,553 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,554 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,554 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,555 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,556 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,556 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,557 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,558 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T04:52:10,559 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T04:52:10,559 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T04:52:10,560 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T04:52:10,561 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T04:52:10,561 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T04:52:10,562 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T04:52:10,563 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T04:52:10,564 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T04:52:10,564 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T04:52:10,565 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T04:52:10,566 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T04:52:10,566 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T04:52:10,567 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T04:52:10,568 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T04:52:10,568 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T04:52:10,569 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T04:52:10,570 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T04:52:10,571 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T04:52:10,572 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T04:52:10,572 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T04:52:10,573 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T04:52:10,574 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T04:52:10,574 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T04:52:10,575 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T04:52:10,576 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T04:52:10,577 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T04:52:10,577 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T04:52:10,578 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T04:52:10,579 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T04:52:10,580 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T04:52:10,581 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T04:52:10,581 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T04:52:10,582 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T04:52:10,583 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T04:52:10,583 copying lightdock/scoring/ddna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T04:52:10,584 copying lightdock/scoring/ddna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T04:52:10,585 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T04:52:10,586 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T04:52:10,586 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T04:52:10,587 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T04:52:10,588 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T04:52:10,589 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T04:52:10,589 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T04:52:10,590 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T04:52:10,591 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T04:52:10,593 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T04:52:10,593 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T04:52:10,594 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T04:52:10,595 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T04:52:10,595 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T04:52:10,596 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T04:52:10,597 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T04:52:10,598 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T04:52:10,598 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T04:52:10,599 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T04:52:10,600 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T04:52:10,601 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T04:52:10,601 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T04:52:10,602 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T04:52:10,603 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T04:52:10,604 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T04:52:10,604 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T04:52:10,605 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T04:52:10,606 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T04:52:10,607 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T04:52:10,607 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T04:52:10,608 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T04:52:10,609 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T04:52:10,609 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T04:52:10,610 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T04:52:10,611 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T04:52:10,612 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T04:52:10,613 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T04:52:10,613 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T04:52:10,614 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T04:52:10,615 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T04:52:10,616 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T04:52:10,617 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T04:52:10,617 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T04:52:10,618 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T04:52:10,619 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T04:52:10,619 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T04:52:10,620 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T04:52:10,621 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T04:52:10,622 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T04:52:10,622 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T04:52:10,623 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T04:52:10,624 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T04:52:10,625 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T04:52:10,625 copying lightdock/scoring/ddna/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T04:52:10,626 copying lightdock/scoring/ddna/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T04:52:10,627 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T04:52:10,627 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T04:52:10,628 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T04:52:10,629 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T04:52:10,629 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T04:52:10,630 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T04:52:10,631 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T04:52:10,632 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T04:52:10,633 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T04:52:10,634 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T04:52:10,634 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T04:52:10,635 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:10,636 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:10,637 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:10,638 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T04:52:10,638 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T04:52:10,639 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T04:52:10,640 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T04:52:10,641 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T04:52:10,642 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:10,642 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:10,643 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:10,644 running egg_info 2025-09-09T04:52:10,722 writing lightdock.egg-info/PKG-INFO 2025-09-09T04:52:10,723 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-09T04:52:10,724 writing requirements to lightdock.egg-info/requires.txt 2025-09-09T04:52:10,725 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-09T04:52:10,831 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T04:52:10,900 reading manifest template 'MANIFEST.in' 2025-09-09T04:52:10,977 adding license file 'LICENSE' 2025-09-09T04:52:11,033 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T04:52:11,036 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-09T04:52:11,036 !! 2025-09-09T04:52:11,036 ******************************************************************************** 2025-09-09T04:52:11,036 ############################ 2025-09-09T04:52:11,037 # Package would be ignored # 2025-09-09T04:52:11,037 ############################ 2025-09-09T04:52:11,037 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-09T04:52:11,037 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,037 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,037 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-09T04:52:11,037 to the `packages` configuration field. 2025-09-09T04:52:11,037 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,037 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,038 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,038 If you don't want 'lightdock.etc' to be distributed and are 2025-09-09T04:52:11,038 already explicitly excluding 'lightdock.etc' via 2025-09-09T04:52:11,038 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,038 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,038 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,039 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,039 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,039 even if it does not contain any `.py` files. 2025-09-09T04:52:11,039 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,039 directory, all directories are treated like packages. 2025-09-09T04:52:11,039 ******************************************************************************** 2025-09-09T04:52:11,039 !! 2025-09-09T04:52:11,040 check.warn(importable) 2025-09-09T04:52:11,041 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,041 !! 2025-09-09T04:52:11,041 ******************************************************************************** 2025-09-09T04:52:11,041 ############################ 2025-09-09T04:52:11,041 # Package would be ignored # 2025-09-09T04:52:11,041 ############################ 2025-09-09T04:52:11,041 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-09T04:52:11,041 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,041 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,042 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-09T04:52:11,042 to the `packages` configuration field. 2025-09-09T04:52:11,042 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,042 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,042 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,042 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-09T04:52:11,043 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-09T04:52:11,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,043 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,043 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,043 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,044 even if it does not contain any `.py` files. 2025-09-09T04:52:11,044 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,044 directory, all directories are treated like packages. 2025-09-09T04:52:11,044 ******************************************************************************** 2025-09-09T04:52:11,044 !! 2025-09-09T04:52:11,044 check.warn(importable) 2025-09-09T04:52:11,050 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,050 !! 2025-09-09T04:52:11,050 ******************************************************************************** 2025-09-09T04:52:11,050 ############################ 2025-09-09T04:52:11,050 # Package would be ignored # 2025-09-09T04:52:11,050 ############################ 2025-09-09T04:52:11,050 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-09T04:52:11,050 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,051 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,051 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-09T04:52:11,051 to the `packages` configuration field. 2025-09-09T04:52:11,051 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,051 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,051 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,051 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,051 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,052 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-09T04:52:11,052 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-09T04:52:11,052 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,052 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,052 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,053 even if it does not contain any `.py` files. 2025-09-09T04:52:11,053 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,053 directory, all directories are treated like packages. 2025-09-09T04:52:11,053 ******************************************************************************** 2025-09-09T04:52:11,053 !! 2025-09-09T04:52:11,053 check.warn(importable) 2025-09-09T04:52:11,053 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,053 !! 2025-09-09T04:52:11,054 ******************************************************************************** 2025-09-09T04:52:11,054 ############################ 2025-09-09T04:52:11,054 # Package would be ignored # 2025-09-09T04:52:11,054 ############################ 2025-09-09T04:52:11,054 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-09T04:52:11,054 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,054 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,054 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-09T04:52:11,054 to the `packages` configuration field. 2025-09-09T04:52:11,054 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,055 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,055 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,055 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-09T04:52:11,055 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-09T04:52:11,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,055 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,056 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,056 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,056 even if it does not contain any `.py` files. 2025-09-09T04:52:11,056 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,056 directory, all directories are treated like packages. 2025-09-09T04:52:11,056 ******************************************************************************** 2025-09-09T04:52:11,057 !! 2025-09-09T04:52:11,057 check.warn(importable) 2025-09-09T04:52:11,057 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,057 !! 2025-09-09T04:52:11,057 ******************************************************************************** 2025-09-09T04:52:11,057 ############################ 2025-09-09T04:52:11,057 # Package would be ignored # 2025-09-09T04:52:11,057 ############################ 2025-09-09T04:52:11,057 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-09T04:52:11,058 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,058 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,058 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-09T04:52:11,058 to the `packages` configuration field. 2025-09-09T04:52:11,058 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,058 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,058 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,059 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,059 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-09T04:52:11,059 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-09T04:52:11,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,059 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,060 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,060 even if it does not contain any `.py` files. 2025-09-09T04:52:11,060 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,060 directory, all directories are treated like packages. 2025-09-09T04:52:11,061 ******************************************************************************** 2025-09-09T04:52:11,061 !! 2025-09-09T04:52:11,061 check.warn(importable) 2025-09-09T04:52:11,061 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,061 !! 2025-09-09T04:52:11,061 ******************************************************************************** 2025-09-09T04:52:11,061 ############################ 2025-09-09T04:52:11,062 # Package would be ignored # 2025-09-09T04:52:11,062 ############################ 2025-09-09T04:52:11,062 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-09T04:52:11,062 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,062 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,062 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-09T04:52:11,062 to the `packages` configuration field. 2025-09-09T04:52:11,062 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,063 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,063 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,063 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-09T04:52:11,063 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-09T04:52:11,063 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,064 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,064 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,064 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,064 even if it does not contain any `.py` files. 2025-09-09T04:52:11,065 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,065 directory, all directories are treated like packages. 2025-09-09T04:52:11,065 ******************************************************************************** 2025-09-09T04:52:11,065 !! 2025-09-09T04:52:11,065 check.warn(importable) 2025-09-09T04:52:11,065 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-09T04:52:11,065 !! 2025-09-09T04:52:11,066 ******************************************************************************** 2025-09-09T04:52:11,066 ############################ 2025-09-09T04:52:11,066 # Package would be ignored # 2025-09-09T04:52:11,066 ############################ 2025-09-09T04:52:11,066 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-09T04:52:11,066 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,066 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,066 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-09T04:52:11,067 to the `packages` configuration field. 2025-09-09T04:52:11,067 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,067 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,067 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,068 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-09T04:52:11,068 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-09T04:52:11,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,068 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,068 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,068 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,069 even if it does not contain any `.py` files. 2025-09-09T04:52:11,069 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,069 directory, all directories are treated like packages. 2025-09-09T04:52:11,069 ******************************************************************************** 2025-09-09T04:52:11,069 !! 2025-09-09T04:52:11,070 check.warn(importable) 2025-09-09T04:52:11,070 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,070 !! 2025-09-09T04:52:11,070 ******************************************************************************** 2025-09-09T04:52:11,070 ############################ 2025-09-09T04:52:11,070 # Package would be ignored # 2025-09-09T04:52:11,070 ############################ 2025-09-09T04:52:11,070 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-09T04:52:11,071 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,071 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,071 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-09T04:52:11,071 to the `packages` configuration field. 2025-09-09T04:52:11,071 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,071 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,071 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,072 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,072 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-09T04:52:11,072 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-09T04:52:11,072 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,072 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,072 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,073 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,073 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,073 even if it does not contain any `.py` files. 2025-09-09T04:52:11,073 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,073 directory, all directories are treated like packages. 2025-09-09T04:52:11,073 ******************************************************************************** 2025-09-09T04:52:11,074 !! 2025-09-09T04:52:11,074 check.warn(importable) 2025-09-09T04:52:11,074 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,074 !! 2025-09-09T04:52:11,074 ******************************************************************************** 2025-09-09T04:52:11,074 ############################ 2025-09-09T04:52:11,074 # Package would be ignored # 2025-09-09T04:52:11,074 ############################ 2025-09-09T04:52:11,075 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-09T04:52:11,075 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,075 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,075 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-09T04:52:11,075 to the `packages` configuration field. 2025-09-09T04:52:11,075 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,075 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,076 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,076 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,076 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-09T04:52:11,076 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-09T04:52:11,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,077 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,077 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,077 even if it does not contain any `.py` files. 2025-09-09T04:52:11,077 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,078 directory, all directories are treated like packages. 2025-09-09T04:52:11,078 ******************************************************************************** 2025-09-09T04:52:11,078 !! 2025-09-09T04:52:11,078 check.warn(importable) 2025-09-09T04:52:11,078 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,078 !! 2025-09-09T04:52:11,078 ******************************************************************************** 2025-09-09T04:52:11,078 ############################ 2025-09-09T04:52:11,079 # Package would be ignored # 2025-09-09T04:52:11,079 ############################ 2025-09-09T04:52:11,079 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,079 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,079 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,079 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-09T04:52:11,079 to the `packages` configuration field. 2025-09-09T04:52:11,080 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,080 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,080 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,080 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,080 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,081 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-09T04:52:11,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,081 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,081 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,081 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,082 even if it does not contain any `.py` files. 2025-09-09T04:52:11,082 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,082 directory, all directories are treated like packages. 2025-09-09T04:52:11,082 ******************************************************************************** 2025-09-09T04:52:11,082 !! 2025-09-09T04:52:11,082 check.warn(importable) 2025-09-09T04:52:11,082 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T04:52:11,082 !! 2025-09-09T04:52:11,083 ******************************************************************************** 2025-09-09T04:52:11,083 ############################ 2025-09-09T04:52:11,083 # Package would be ignored # 2025-09-09T04:52:11,083 ############################ 2025-09-09T04:52:11,083 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-09T04:52:11,083 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,083 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,083 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-09T04:52:11,083 to the `packages` configuration field. 2025-09-09T04:52:11,083 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,084 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,084 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,084 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,084 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-09T04:52:11,084 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-09T04:52:11,084 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,084 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,084 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,085 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,085 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,085 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,085 even if it does not contain any `.py` files. 2025-09-09T04:52:11,085 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,085 directory, all directories are treated like packages. 2025-09-09T04:52:11,085 ******************************************************************************** 2025-09-09T04:52:11,085 !! 2025-09-09T04:52:11,086 check.warn(importable) 2025-09-09T04:52:11,086 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T04:52:11,086 !! 2025-09-09T04:52:11,086 ******************************************************************************** 2025-09-09T04:52:11,086 ############################ 2025-09-09T04:52:11,086 # Package would be ignored # 2025-09-09T04:52:11,086 ############################ 2025-09-09T04:52:11,086 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-09T04:52:11,086 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,086 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,087 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-09T04:52:11,087 to the `packages` configuration field. 2025-09-09T04:52:11,087 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,087 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,087 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,087 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,087 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-09T04:52:11,088 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-09T04:52:11,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,088 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,088 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,088 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,088 even if it does not contain any `.py` files. 2025-09-09T04:52:11,089 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,089 directory, all directories are treated like packages. 2025-09-09T04:52:11,089 ******************************************************************************** 2025-09-09T04:52:11,089 !! 2025-09-09T04:52:11,089 check.warn(importable) 2025-09-09T04:52:11,089 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T04:52:11,089 !! 2025-09-09T04:52:11,089 ******************************************************************************** 2025-09-09T04:52:11,089 ############################ 2025-09-09T04:52:11,089 # Package would be ignored # 2025-09-09T04:52:11,090 ############################ 2025-09-09T04:52:11,090 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-09T04:52:11,090 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,090 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,090 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-09T04:52:11,090 to the `packages` configuration field. 2025-09-09T04:52:11,090 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,090 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,091 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,091 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,091 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-09T04:52:11,091 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-09T04:52:11,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,091 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,091 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,092 even if it does not contain any `.py` files. 2025-09-09T04:52:11,092 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,092 directory, all directories are treated like packages. 2025-09-09T04:52:11,092 ******************************************************************************** 2025-09-09T04:52:11,092 !! 2025-09-09T04:52:11,092 check.warn(importable) 2025-09-09T04:52:11,092 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T04:52:11,093 !! 2025-09-09T04:52:11,093 ******************************************************************************** 2025-09-09T04:52:11,093 ############################ 2025-09-09T04:52:11,093 # Package would be ignored # 2025-09-09T04:52:11,093 ############################ 2025-09-09T04:52:11,093 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-09T04:52:11,093 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,093 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,093 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-09T04:52:11,094 to the `packages` configuration field. 2025-09-09T04:52:11,094 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,094 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,094 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,094 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-09T04:52:11,094 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-09T04:52:11,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,095 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,095 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,095 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,095 even if it does not contain any `.py` files. 2025-09-09T04:52:11,096 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,096 directory, all directories are treated like packages. 2025-09-09T04:52:11,096 ******************************************************************************** 2025-09-09T04:52:11,096 !! 2025-09-09T04:52:11,096 check.warn(importable) 2025-09-09T04:52:11,096 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,096 !! 2025-09-09T04:52:11,096 ******************************************************************************** 2025-09-09T04:52:11,096 ############################ 2025-09-09T04:52:11,096 # Package would be ignored # 2025-09-09T04:52:11,097 ############################ 2025-09-09T04:52:11,097 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-09T04:52:11,097 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,097 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,097 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-09T04:52:11,097 to the `packages` configuration field. 2025-09-09T04:52:11,097 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,097 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,097 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,097 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,098 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-09T04:52:11,098 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-09T04:52:11,098 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,098 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,098 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,098 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,098 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,099 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,099 even if it does not contain any `.py` files. 2025-09-09T04:52:11,099 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,099 directory, all directories are treated like packages. 2025-09-09T04:52:11,099 ******************************************************************************** 2025-09-09T04:52:11,099 !! 2025-09-09T04:52:11,099 check.warn(importable) 2025-09-09T04:52:11,099 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,099 !! 2025-09-09T04:52:11,100 ******************************************************************************** 2025-09-09T04:52:11,100 ############################ 2025-09-09T04:52:11,100 # Package would be ignored # 2025-09-09T04:52:11,100 ############################ 2025-09-09T04:52:11,100 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,100 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,100 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,100 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-09T04:52:11,100 to the `packages` configuration field. 2025-09-09T04:52:11,101 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,101 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,101 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,101 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,101 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,101 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-09T04:52:11,101 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-09T04:52:11,101 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,101 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,102 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,102 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,102 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,102 even if it does not contain any `.py` files. 2025-09-09T04:52:11,102 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,102 directory, all directories are treated like packages. 2025-09-09T04:52:11,102 ******************************************************************************** 2025-09-09T04:52:11,103 !! 2025-09-09T04:52:11,103 check.warn(importable) 2025-09-09T04:52:11,103 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,103 !! 2025-09-09T04:52:11,103 ******************************************************************************** 2025-09-09T04:52:11,103 ############################ 2025-09-09T04:52:11,103 # Package would be ignored # 2025-09-09T04:52:11,103 ############################ 2025-09-09T04:52:11,103 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,103 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,104 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,104 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,104 to the `packages` configuration field. 2025-09-09T04:52:11,104 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,104 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,104 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,105 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,105 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-09T04:52:11,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,105 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,105 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,105 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,105 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,105 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,106 even if it does not contain any `.py` files. 2025-09-09T04:52:11,106 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,106 directory, all directories are treated like packages. 2025-09-09T04:52:11,106 ******************************************************************************** 2025-09-09T04:52:11,106 !! 2025-09-09T04:52:11,106 check.warn(importable) 2025-09-09T04:52:11,106 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,106 !! 2025-09-09T04:52:11,106 ******************************************************************************** 2025-09-09T04:52:11,107 ############################ 2025-09-09T04:52:11,107 # Package would be ignored # 2025-09-09T04:52:11,107 ############################ 2025-09-09T04:52:11,107 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-09T04:52:11,107 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,107 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,107 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-09T04:52:11,107 to the `packages` configuration field. 2025-09-09T04:52:11,107 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,108 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,108 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,108 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-09T04:52:11,108 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-09T04:52:11,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,108 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,109 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,109 even if it does not contain any `.py` files. 2025-09-09T04:52:11,109 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,109 directory, all directories are treated like packages. 2025-09-09T04:52:11,109 ******************************************************************************** 2025-09-09T04:52:11,109 !! 2025-09-09T04:52:11,110 check.warn(importable) 2025-09-09T04:52:11,110 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,110 !! 2025-09-09T04:52:11,110 ******************************************************************************** 2025-09-09T04:52:11,110 ############################ 2025-09-09T04:52:11,110 # Package would be ignored # 2025-09-09T04:52:11,110 ############################ 2025-09-09T04:52:11,110 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-09T04:52:11,110 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,110 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,111 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-09T04:52:11,111 to the `packages` configuration field. 2025-09-09T04:52:11,111 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,111 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,111 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,111 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,111 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,111 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-09T04:52:11,112 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-09T04:52:11,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,112 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,112 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,112 even if it does not contain any `.py` files. 2025-09-09T04:52:11,113 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,113 directory, all directories are treated like packages. 2025-09-09T04:52:11,113 ******************************************************************************** 2025-09-09T04:52:11,113 !! 2025-09-09T04:52:11,113 check.warn(importable) 2025-09-09T04:52:11,113 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,113 !! 2025-09-09T04:52:11,113 ******************************************************************************** 2025-09-09T04:52:11,113 ############################ 2025-09-09T04:52:11,113 # Package would be ignored # 2025-09-09T04:52:11,114 ############################ 2025-09-09T04:52:11,114 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,114 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,114 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,114 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-09T04:52:11,114 to the `packages` configuration field. 2025-09-09T04:52:11,114 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,114 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,114 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,115 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,115 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-09T04:52:11,115 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,115 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,115 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,116 even if it does not contain any `.py` files. 2025-09-09T04:52:11,116 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,116 directory, all directories are treated like packages. 2025-09-09T04:52:11,116 ******************************************************************************** 2025-09-09T04:52:11,116 !! 2025-09-09T04:52:11,116 check.warn(importable) 2025-09-09T04:52:11,116 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,116 !! 2025-09-09T04:52:11,117 ******************************************************************************** 2025-09-09T04:52:11,117 ############################ 2025-09-09T04:52:11,117 # Package would be ignored # 2025-09-09T04:52:11,117 ############################ 2025-09-09T04:52:11,117 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-09T04:52:11,117 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,117 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,117 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-09T04:52:11,117 to the `packages` configuration field. 2025-09-09T04:52:11,117 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,118 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,118 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,118 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-09T04:52:11,118 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-09T04:52:11,118 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,119 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,119 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,119 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,119 even if it does not contain any `.py` files. 2025-09-09T04:52:11,119 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,119 directory, all directories are treated like packages. 2025-09-09T04:52:11,120 ******************************************************************************** 2025-09-09T04:52:11,120 !! 2025-09-09T04:52:11,120 check.warn(importable) 2025-09-09T04:52:11,120 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,120 !! 2025-09-09T04:52:11,120 ******************************************************************************** 2025-09-09T04:52:11,120 ############################ 2025-09-09T04:52:11,120 # Package would be ignored # 2025-09-09T04:52:11,120 ############################ 2025-09-09T04:52:11,121 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-09T04:52:11,121 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,121 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,121 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-09T04:52:11,121 to the `packages` configuration field. 2025-09-09T04:52:11,121 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,121 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,121 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,122 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,122 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-09T04:52:11,122 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-09T04:52:11,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,122 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,122 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,122 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,123 even if it does not contain any `.py` files. 2025-09-09T04:52:11,123 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,123 directory, all directories are treated like packages. 2025-09-09T04:52:11,123 ******************************************************************************** 2025-09-09T04:52:11,123 !! 2025-09-09T04:52:11,123 check.warn(importable) 2025-09-09T04:52:11,123 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,123 !! 2025-09-09T04:52:11,124 ******************************************************************************** 2025-09-09T04:52:11,124 ############################ 2025-09-09T04:52:11,124 # Package would be ignored # 2025-09-09T04:52:11,124 ############################ 2025-09-09T04:52:11,124 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,124 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,124 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,124 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-09T04:52:11,124 to the `packages` configuration field. 2025-09-09T04:52:11,124 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,125 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,125 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,125 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,125 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,125 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-09T04:52:11,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,125 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,125 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,126 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,126 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,126 even if it does not contain any `.py` files. 2025-09-09T04:52:11,126 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,126 directory, all directories are treated like packages. 2025-09-09T04:52:11,126 ******************************************************************************** 2025-09-09T04:52:11,126 !! 2025-09-09T04:52:11,127 check.warn(importable) 2025-09-09T04:52:11,127 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T04:52:11,127 !! 2025-09-09T04:52:11,127 ******************************************************************************** 2025-09-09T04:52:11,127 ############################ 2025-09-09T04:52:11,127 # Package would be ignored # 2025-09-09T04:52:11,127 ############################ 2025-09-09T04:52:11,127 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-09T04:52:11,127 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,127 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,128 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-09T04:52:11,128 to the `packages` configuration field. 2025-09-09T04:52:11,128 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,128 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,128 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,128 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,128 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-09T04:52:11,129 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-09T04:52:11,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,129 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,129 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,129 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,129 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,129 even if it does not contain any `.py` files. 2025-09-09T04:52:11,130 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,130 directory, all directories are treated like packages. 2025-09-09T04:52:11,130 ******************************************************************************** 2025-09-09T04:52:11,130 !! 2025-09-09T04:52:11,130 check.warn(importable) 2025-09-09T04:52:11,130 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T04:52:11,130 !! 2025-09-09T04:52:11,130 ******************************************************************************** 2025-09-09T04:52:11,130 ############################ 2025-09-09T04:52:11,130 # Package would be ignored # 2025-09-09T04:52:11,131 ############################ 2025-09-09T04:52:11,131 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-09T04:52:11,131 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,131 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,131 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-09T04:52:11,131 to the `packages` configuration field. 2025-09-09T04:52:11,131 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,131 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,131 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,132 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,132 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-09T04:52:11,132 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-09T04:52:11,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,132 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,132 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,132 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,133 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,133 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,133 even if it does not contain any `.py` files. 2025-09-09T04:52:11,133 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,133 directory, all directories are treated like packages. 2025-09-09T04:52:11,133 ******************************************************************************** 2025-09-09T04:52:11,133 !! 2025-09-09T04:52:11,133 check.warn(importable) 2025-09-09T04:52:11,134 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T04:52:11,134 !! 2025-09-09T04:52:11,134 ******************************************************************************** 2025-09-09T04:52:11,134 ############################ 2025-09-09T04:52:11,134 # Package would be ignored # 2025-09-09T04:52:11,134 ############################ 2025-09-09T04:52:11,134 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-09T04:52:11,134 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,134 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,134 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-09T04:52:11,134 to the `packages` configuration field. 2025-09-09T04:52:11,135 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,135 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,135 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,135 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,135 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,135 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-09T04:52:11,135 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-09T04:52:11,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,136 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,136 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,136 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,136 even if it does not contain any `.py` files. 2025-09-09T04:52:11,136 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,136 directory, all directories are treated like packages. 2025-09-09T04:52:11,137 ******************************************************************************** 2025-09-09T04:52:11,137 !! 2025-09-09T04:52:11,137 check.warn(importable) 2025-09-09T04:52:11,137 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T04:52:11,137 !! 2025-09-09T04:52:11,137 ******************************************************************************** 2025-09-09T04:52:11,137 ############################ 2025-09-09T04:52:11,137 # Package would be ignored # 2025-09-09T04:52:11,137 ############################ 2025-09-09T04:52:11,137 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-09T04:52:11,137 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,138 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,138 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-09T04:52:11,138 to the `packages` configuration field. 2025-09-09T04:52:11,138 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,138 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,138 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,139 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-09T04:52:11,139 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-09T04:52:11,139 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,139 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,139 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,139 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,139 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,140 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,140 even if it does not contain any `.py` files. 2025-09-09T04:52:11,140 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,140 directory, all directories are treated like packages. 2025-09-09T04:52:11,140 ******************************************************************************** 2025-09-09T04:52:11,140 !! 2025-09-09T04:52:11,140 check.warn(importable) 2025-09-09T04:52:11,140 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,140 !! 2025-09-09T04:52:11,140 ******************************************************************************** 2025-09-09T04:52:11,141 ############################ 2025-09-09T04:52:11,141 # Package would be ignored # 2025-09-09T04:52:11,141 ############################ 2025-09-09T04:52:11,141 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-09T04:52:11,141 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,141 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,141 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-09T04:52:11,141 to the `packages` configuration field. 2025-09-09T04:52:11,141 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,141 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,142 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,142 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,142 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,142 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-09T04:52:11,142 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-09T04:52:11,142 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,142 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,142 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,143 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,143 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,143 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,143 even if it does not contain any `.py` files. 2025-09-09T04:52:11,143 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,143 directory, all directories are treated like packages. 2025-09-09T04:52:11,143 ******************************************************************************** 2025-09-09T04:52:11,144 !! 2025-09-09T04:52:11,144 check.warn(importable) 2025-09-09T04:52:11,144 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,144 !! 2025-09-09T04:52:11,144 ******************************************************************************** 2025-09-09T04:52:11,144 ############################ 2025-09-09T04:52:11,144 # Package would be ignored # 2025-09-09T04:52:11,144 ############################ 2025-09-09T04:52:11,144 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-09T04:52:11,144 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,145 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,145 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-09T04:52:11,145 to the `packages` configuration field. 2025-09-09T04:52:11,145 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,145 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,145 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,146 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-09T04:52:11,146 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-09T04:52:11,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,146 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,146 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,146 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,147 even if it does not contain any `.py` files. 2025-09-09T04:52:11,147 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,147 directory, all directories are treated like packages. 2025-09-09T04:52:11,147 ******************************************************************************** 2025-09-09T04:52:11,147 !! 2025-09-09T04:52:11,147 check.warn(importable) 2025-09-09T04:52:11,147 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,147 !! 2025-09-09T04:52:11,147 ******************************************************************************** 2025-09-09T04:52:11,147 ############################ 2025-09-09T04:52:11,147 # Package would be ignored # 2025-09-09T04:52:11,148 ############################ 2025-09-09T04:52:11,148 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,148 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,148 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,148 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-09T04:52:11,148 to the `packages` configuration field. 2025-09-09T04:52:11,148 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,148 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,148 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,149 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,149 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,149 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,149 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-09T04:52:11,149 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,149 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,149 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,150 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,150 even if it does not contain any `.py` files. 2025-09-09T04:52:11,150 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,150 directory, all directories are treated like packages. 2025-09-09T04:52:11,150 ******************************************************************************** 2025-09-09T04:52:11,150 !! 2025-09-09T04:52:11,150 check.warn(importable) 2025-09-09T04:52:11,150 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,151 !! 2025-09-09T04:52:11,151 ******************************************************************************** 2025-09-09T04:52:11,151 ############################ 2025-09-09T04:52:11,151 # Package would be ignored # 2025-09-09T04:52:11,151 ############################ 2025-09-09T04:52:11,151 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-09T04:52:11,151 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,151 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,151 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-09T04:52:11,151 to the `packages` configuration field. 2025-09-09T04:52:11,152 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,152 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,152 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,152 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-09T04:52:11,152 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-09T04:52:11,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,153 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,153 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,153 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,153 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,153 even if it does not contain any `.py` files. 2025-09-09T04:52:11,153 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,153 directory, all directories are treated like packages. 2025-09-09T04:52:11,153 ******************************************************************************** 2025-09-09T04:52:11,154 !! 2025-09-09T04:52:11,154 check.warn(importable) 2025-09-09T04:52:11,154 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,154 !! 2025-09-09T04:52:11,154 ******************************************************************************** 2025-09-09T04:52:11,154 ############################ 2025-09-09T04:52:11,154 # Package would be ignored # 2025-09-09T04:52:11,154 ############################ 2025-09-09T04:52:11,154 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,154 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,155 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,155 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-09T04:52:11,155 to the `packages` configuration field. 2025-09-09T04:52:11,155 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,155 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,155 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,156 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,156 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-09T04:52:11,156 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-09T04:52:11,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,156 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,156 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,157 even if it does not contain any `.py` files. 2025-09-09T04:52:11,157 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,157 directory, all directories are treated like packages. 2025-09-09T04:52:11,157 ******************************************************************************** 2025-09-09T04:52:11,157 !! 2025-09-09T04:52:11,157 check.warn(importable) 2025-09-09T04:52:11,157 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,157 !! 2025-09-09T04:52:11,158 ******************************************************************************** 2025-09-09T04:52:11,158 ############################ 2025-09-09T04:52:11,158 # Package would be ignored # 2025-09-09T04:52:11,158 ############################ 2025-09-09T04:52:11,158 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,158 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,158 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,158 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,158 to the `packages` configuration field. 2025-09-09T04:52:11,158 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,159 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,159 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,159 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,159 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,159 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-09T04:52:11,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,159 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,159 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,160 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,160 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,160 even if it does not contain any `.py` files. 2025-09-09T04:52:11,160 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,160 directory, all directories are treated like packages. 2025-09-09T04:52:11,160 ******************************************************************************** 2025-09-09T04:52:11,161 !! 2025-09-09T04:52:11,161 check.warn(importable) 2025-09-09T04:52:11,161 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,161 !! 2025-09-09T04:52:11,161 ******************************************************************************** 2025-09-09T04:52:11,161 ############################ 2025-09-09T04:52:11,161 # Package would be ignored # 2025-09-09T04:52:11,161 ############################ 2025-09-09T04:52:11,161 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-09T04:52:11,161 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,162 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,162 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-09T04:52:11,162 to the `packages` configuration field. 2025-09-09T04:52:11,162 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,162 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,162 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,162 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,163 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-09T04:52:11,163 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-09T04:52:11,163 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,163 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,163 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,163 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,163 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,163 even if it does not contain any `.py` files. 2025-09-09T04:52:11,164 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,164 directory, all directories are treated like packages. 2025-09-09T04:52:11,164 ******************************************************************************** 2025-09-09T04:52:11,164 !! 2025-09-09T04:52:11,164 check.warn(importable) 2025-09-09T04:52:11,164 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,164 !! 2025-09-09T04:52:11,164 ******************************************************************************** 2025-09-09T04:52:11,164 ############################ 2025-09-09T04:52:11,164 # Package would be ignored # 2025-09-09T04:52:11,165 ############################ 2025-09-09T04:52:11,165 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-09T04:52:11,165 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,165 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,165 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-09T04:52:11,165 to the `packages` configuration field. 2025-09-09T04:52:11,165 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,165 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,165 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,166 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,166 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,166 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-09T04:52:11,166 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-09T04:52:11,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,166 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,166 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,166 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,167 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,167 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,167 even if it does not contain any `.py` files. 2025-09-09T04:52:11,167 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,167 directory, all directories are treated like packages. 2025-09-09T04:52:11,167 ******************************************************************************** 2025-09-09T04:52:11,167 !! 2025-09-09T04:52:11,167 check.warn(importable) 2025-09-09T04:52:11,167 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,167 !! 2025-09-09T04:52:11,168 ******************************************************************************** 2025-09-09T04:52:11,168 ############################ 2025-09-09T04:52:11,168 # Package would be ignored # 2025-09-09T04:52:11,168 ############################ 2025-09-09T04:52:11,168 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,168 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,168 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,168 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-09T04:52:11,169 to the `packages` configuration field. 2025-09-09T04:52:11,169 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,169 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,169 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,169 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,169 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-09T04:52:11,170 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,170 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,170 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,170 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,170 even if it does not contain any `.py` files. 2025-09-09T04:52:11,170 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,171 directory, all directories are treated like packages. 2025-09-09T04:52:11,171 ******************************************************************************** 2025-09-09T04:52:11,171 !! 2025-09-09T04:52:11,171 check.warn(importable) 2025-09-09T04:52:11,171 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,171 !! 2025-09-09T04:52:11,171 ******************************************************************************** 2025-09-09T04:52:11,171 ############################ 2025-09-09T04:52:11,171 # Package would be ignored # 2025-09-09T04:52:11,171 ############################ 2025-09-09T04:52:11,172 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-09T04:52:11,172 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,172 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,172 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-09T04:52:11,172 to the `packages` configuration field. 2025-09-09T04:52:11,172 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,172 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,172 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,172 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,173 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-09T04:52:11,173 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-09T04:52:11,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,173 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,173 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,174 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,174 even if it does not contain any `.py` files. 2025-09-09T04:52:11,174 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,174 directory, all directories are treated like packages. 2025-09-09T04:52:11,174 ******************************************************************************** 2025-09-09T04:52:11,174 !! 2025-09-09T04:52:11,174 check.warn(importable) 2025-09-09T04:52:11,174 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,174 !! 2025-09-09T04:52:11,175 ******************************************************************************** 2025-09-09T04:52:11,175 ############################ 2025-09-09T04:52:11,175 # Package would be ignored # 2025-09-09T04:52:11,175 ############################ 2025-09-09T04:52:11,175 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-09T04:52:11,175 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,175 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,175 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-09T04:52:11,175 to the `packages` configuration field. 2025-09-09T04:52:11,175 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,176 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,176 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,176 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-09T04:52:11,176 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-09T04:52:11,176 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,176 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,176 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,177 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,177 even if it does not contain any `.py` files. 2025-09-09T04:52:11,177 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,177 directory, all directories are treated like packages. 2025-09-09T04:52:11,177 ******************************************************************************** 2025-09-09T04:52:11,177 !! 2025-09-09T04:52:11,178 check.warn(importable) 2025-09-09T04:52:11,178 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,178 !! 2025-09-09T04:52:11,178 ******************************************************************************** 2025-09-09T04:52:11,178 ############################ 2025-09-09T04:52:11,178 # Package would be ignored # 2025-09-09T04:52:11,178 ############################ 2025-09-09T04:52:11,178 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,178 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,178 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,179 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-09T04:52:11,179 to the `packages` configuration field. 2025-09-09T04:52:11,179 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,179 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,179 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,179 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,179 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,179 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,180 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-09T04:52:11,180 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,180 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,180 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,180 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,180 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,180 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,181 even if it does not contain any `.py` files. 2025-09-09T04:52:11,181 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,181 directory, all directories are treated like packages. 2025-09-09T04:52:11,181 ******************************************************************************** 2025-09-09T04:52:11,181 !! 2025-09-09T04:52:11,181 check.warn(importable) 2025-09-09T04:52:11,181 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T04:52:11,181 !! 2025-09-09T04:52:11,181 ******************************************************************************** 2025-09-09T04:52:11,181 ############################ 2025-09-09T04:52:11,182 # Package would be ignored # 2025-09-09T04:52:11,182 ############################ 2025-09-09T04:52:11,182 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-09T04:52:11,182 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,182 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,182 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-09T04:52:11,182 to the `packages` configuration field. 2025-09-09T04:52:11,182 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,182 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,183 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,183 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-09T04:52:11,183 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-09T04:52:11,183 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,183 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,183 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,183 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,184 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,184 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,184 even if it does not contain any `.py` files. 2025-09-09T04:52:11,184 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,184 directory, all directories are treated like packages. 2025-09-09T04:52:11,184 ******************************************************************************** 2025-09-09T04:52:11,184 !! 2025-09-09T04:52:11,184 check.warn(importable) 2025-09-09T04:52:11,185 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T04:52:11,185 !! 2025-09-09T04:52:11,185 ******************************************************************************** 2025-09-09T04:52:11,185 ############################ 2025-09-09T04:52:11,185 # Package would be ignored # 2025-09-09T04:52:11,185 ############################ 2025-09-09T04:52:11,185 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-09T04:52:11,185 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,185 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,185 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-09T04:52:11,185 to the `packages` configuration field. 2025-09-09T04:52:11,186 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,186 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,186 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,186 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,186 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,186 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-09T04:52:11,186 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-09T04:52:11,186 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,187 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,187 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,187 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,187 even if it does not contain any `.py` files. 2025-09-09T04:52:11,187 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,187 directory, all directories are treated like packages. 2025-09-09T04:52:11,188 ******************************************************************************** 2025-09-09T04:52:11,188 !! 2025-09-09T04:52:11,188 check.warn(importable) 2025-09-09T04:52:11,188 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T04:52:11,188 !! 2025-09-09T04:52:11,188 ******************************************************************************** 2025-09-09T04:52:11,188 ############################ 2025-09-09T04:52:11,188 # Package would be ignored # 2025-09-09T04:52:11,188 ############################ 2025-09-09T04:52:11,188 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-09T04:52:11,189 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,189 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,189 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-09T04:52:11,189 to the `packages` configuration field. 2025-09-09T04:52:11,189 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,189 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,189 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,190 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,190 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-09T04:52:11,190 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-09T04:52:11,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,190 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,190 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,190 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,191 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,191 even if it does not contain any `.py` files. 2025-09-09T04:52:11,191 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,191 directory, all directories are treated like packages. 2025-09-09T04:52:11,191 ******************************************************************************** 2025-09-09T04:52:11,191 !! 2025-09-09T04:52:11,191 check.warn(importable) 2025-09-09T04:52:11,191 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T04:52:11,191 !! 2025-09-09T04:52:11,191 ******************************************************************************** 2025-09-09T04:52:11,192 ############################ 2025-09-09T04:52:11,192 # Package would be ignored # 2025-09-09T04:52:11,192 ############################ 2025-09-09T04:52:11,192 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-09T04:52:11,192 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,192 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,192 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-09T04:52:11,192 to the `packages` configuration field. 2025-09-09T04:52:11,192 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,193 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,193 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,193 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,193 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,193 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-09T04:52:11,193 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-09T04:52:11,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,193 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,193 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,194 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,194 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,194 even if it does not contain any `.py` files. 2025-09-09T04:52:11,194 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,194 directory, all directories are treated like packages. 2025-09-09T04:52:11,194 ******************************************************************************** 2025-09-09T04:52:11,195 !! 2025-09-09T04:52:11,195 check.warn(importable) 2025-09-09T04:52:11,195 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,195 !! 2025-09-09T04:52:11,195 ******************************************************************************** 2025-09-09T04:52:11,195 ############################ 2025-09-09T04:52:11,195 # Package would be ignored # 2025-09-09T04:52:11,195 ############################ 2025-09-09T04:52:11,195 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-09T04:52:11,195 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,196 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,196 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-09T04:52:11,196 to the `packages` configuration field. 2025-09-09T04:52:11,196 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,196 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,196 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,197 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-09T04:52:11,197 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-09T04:52:11,197 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,197 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,197 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,197 even if it does not contain any `.py` files. 2025-09-09T04:52:11,198 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,198 directory, all directories are treated like packages. 2025-09-09T04:52:11,198 ******************************************************************************** 2025-09-09T04:52:11,198 !! 2025-09-09T04:52:11,198 check.warn(importable) 2025-09-09T04:52:11,198 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,198 !! 2025-09-09T04:52:11,198 ******************************************************************************** 2025-09-09T04:52:11,198 ############################ 2025-09-09T04:52:11,198 # Package would be ignored # 2025-09-09T04:52:11,199 ############################ 2025-09-09T04:52:11,199 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,199 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,199 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,199 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-09T04:52:11,199 to the `packages` configuration field. 2025-09-09T04:52:11,199 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,199 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,199 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,200 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,200 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-09T04:52:11,200 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-09T04:52:11,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,200 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,200 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,201 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,201 even if it does not contain any `.py` files. 2025-09-09T04:52:11,201 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,201 directory, all directories are treated like packages. 2025-09-09T04:52:11,201 ******************************************************************************** 2025-09-09T04:52:11,201 !! 2025-09-09T04:52:11,201 check.warn(importable) 2025-09-09T04:52:11,201 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,202 !! 2025-09-09T04:52:11,202 ******************************************************************************** 2025-09-09T04:52:11,202 ############################ 2025-09-09T04:52:11,202 # Package would be ignored # 2025-09-09T04:52:11,202 ############################ 2025-09-09T04:52:11,202 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,202 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,202 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,202 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,202 to the `packages` configuration field. 2025-09-09T04:52:11,203 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,203 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,203 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,203 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,203 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,203 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-09T04:52:11,203 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,203 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,204 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,204 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,204 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,204 even if it does not contain any `.py` files. 2025-09-09T04:52:11,204 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,204 directory, all directories are treated like packages. 2025-09-09T04:52:11,205 ******************************************************************************** 2025-09-09T04:52:11,205 !! 2025-09-09T04:52:11,205 check.warn(importable) 2025-09-09T04:52:11,205 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,205 !! 2025-09-09T04:52:11,205 ******************************************************************************** 2025-09-09T04:52:11,205 ############################ 2025-09-09T04:52:11,205 # Package would be ignored # 2025-09-09T04:52:11,205 ############################ 2025-09-09T04:52:11,205 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-09T04:52:11,206 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,206 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,206 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-09T04:52:11,206 to the `packages` configuration field. 2025-09-09T04:52:11,206 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,206 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,206 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,207 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-09T04:52:11,207 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-09T04:52:11,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,207 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,207 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,208 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,208 even if it does not contain any `.py` files. 2025-09-09T04:52:11,208 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,208 directory, all directories are treated like packages. 2025-09-09T04:52:11,208 ******************************************************************************** 2025-09-09T04:52:11,208 !! 2025-09-09T04:52:11,208 check.warn(importable) 2025-09-09T04:52:11,208 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,208 !! 2025-09-09T04:52:11,209 ******************************************************************************** 2025-09-09T04:52:11,209 ############################ 2025-09-09T04:52:11,209 # Package would be ignored # 2025-09-09T04:52:11,209 ############################ 2025-09-09T04:52:11,209 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-09T04:52:11,209 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,209 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,209 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-09T04:52:11,209 to the `packages` configuration field. 2025-09-09T04:52:11,209 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,210 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,210 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,210 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,210 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-09T04:52:11,210 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-09T04:52:11,210 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,210 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,210 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,211 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,211 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,211 even if it does not contain any `.py` files. 2025-09-09T04:52:11,211 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,211 directory, all directories are treated like packages. 2025-09-09T04:52:11,211 ******************************************************************************** 2025-09-09T04:52:11,211 !! 2025-09-09T04:52:11,212 check.warn(importable) 2025-09-09T04:52:11,212 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,212 !! 2025-09-09T04:52:11,212 ******************************************************************************** 2025-09-09T04:52:11,212 ############################ 2025-09-09T04:52:11,212 # Package would be ignored # 2025-09-09T04:52:11,212 ############################ 2025-09-09T04:52:11,212 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,212 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,212 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,213 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-09T04:52:11,213 to the `packages` configuration field. 2025-09-09T04:52:11,213 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,213 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,213 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,213 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,213 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,213 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,214 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-09T04:52:11,214 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,214 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,214 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,214 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,214 even if it does not contain any `.py` files. 2025-09-09T04:52:11,214 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,215 directory, all directories are treated like packages. 2025-09-09T04:52:11,215 ******************************************************************************** 2025-09-09T04:52:11,215 !! 2025-09-09T04:52:11,215 check.warn(importable) 2025-09-09T04:52:11,215 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,215 !! 2025-09-09T04:52:11,215 ******************************************************************************** 2025-09-09T04:52:11,215 ############################ 2025-09-09T04:52:11,215 # Package would be ignored # 2025-09-09T04:52:11,215 ############################ 2025-09-09T04:52:11,216 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-09T04:52:11,216 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,216 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,216 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-09T04:52:11,216 to the `packages` configuration field. 2025-09-09T04:52:11,216 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,216 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,216 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,216 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,217 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,217 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-09T04:52:11,217 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-09T04:52:11,217 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,217 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,217 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,218 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,218 even if it does not contain any `.py` files. 2025-09-09T04:52:11,218 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,218 directory, all directories are treated like packages. 2025-09-09T04:52:11,218 ******************************************************************************** 2025-09-09T04:52:11,218 !! 2025-09-09T04:52:11,218 check.warn(importable) 2025-09-09T04:52:11,218 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,219 !! 2025-09-09T04:52:11,219 ******************************************************************************** 2025-09-09T04:52:11,219 ############################ 2025-09-09T04:52:11,219 # Package would be ignored # 2025-09-09T04:52:11,219 ############################ 2025-09-09T04:52:11,219 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-09T04:52:11,219 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,219 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,219 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-09T04:52:11,220 to the `packages` configuration field. 2025-09-09T04:52:11,220 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,220 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,220 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,220 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,220 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-09T04:52:11,220 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-09T04:52:11,220 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,221 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,221 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,221 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,221 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,221 even if it does not contain any `.py` files. 2025-09-09T04:52:11,221 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,221 directory, all directories are treated like packages. 2025-09-09T04:52:11,222 ******************************************************************************** 2025-09-09T04:52:11,222 !! 2025-09-09T04:52:11,222 check.warn(importable) 2025-09-09T04:52:11,222 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,222 !! 2025-09-09T04:52:11,222 ******************************************************************************** 2025-09-09T04:52:11,222 ############################ 2025-09-09T04:52:11,222 # Package would be ignored # 2025-09-09T04:52:11,222 ############################ 2025-09-09T04:52:11,222 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,223 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,223 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,223 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-09T04:52:11,223 to the `packages` configuration field. 2025-09-09T04:52:11,223 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,223 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,223 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,223 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,224 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,224 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-09T04:52:11,224 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,224 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,224 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,224 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,225 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,225 even if it does not contain any `.py` files. 2025-09-09T04:52:11,225 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,225 directory, all directories are treated like packages. 2025-09-09T04:52:11,225 ******************************************************************************** 2025-09-09T04:52:11,225 !! 2025-09-09T04:52:11,225 check.warn(importable) 2025-09-09T04:52:11,225 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,225 !! 2025-09-09T04:52:11,225 ******************************************************************************** 2025-09-09T04:52:11,226 ############################ 2025-09-09T04:52:11,226 # Package would be ignored # 2025-09-09T04:52:11,226 ############################ 2025-09-09T04:52:11,226 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-09T04:52:11,226 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,226 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,226 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-09T04:52:11,226 to the `packages` configuration field. 2025-09-09T04:52:11,226 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,226 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,227 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,227 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,227 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-09T04:52:11,227 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-09T04:52:11,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,227 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,227 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,228 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,228 even if it does not contain any `.py` files. 2025-09-09T04:52:11,228 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,228 directory, all directories are treated like packages. 2025-09-09T04:52:11,228 ******************************************************************************** 2025-09-09T04:52:11,228 !! 2025-09-09T04:52:11,228 check.warn(importable) 2025-09-09T04:52:11,229 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,229 !! 2025-09-09T04:52:11,229 ******************************************************************************** 2025-09-09T04:52:11,229 ############################ 2025-09-09T04:52:11,229 # Package would be ignored # 2025-09-09T04:52:11,229 ############################ 2025-09-09T04:52:11,229 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-09T04:52:11,229 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,230 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,230 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-09T04:52:11,230 to the `packages` configuration field. 2025-09-09T04:52:11,230 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,230 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,230 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,230 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,231 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-09T04:52:11,231 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-09T04:52:11,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,231 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,231 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,231 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,232 even if it does not contain any `.py` files. 2025-09-09T04:52:11,232 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,232 directory, all directories are treated like packages. 2025-09-09T04:52:11,232 ******************************************************************************** 2025-09-09T04:52:11,232 !! 2025-09-09T04:52:11,232 check.warn(importable) 2025-09-09T04:52:11,232 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,232 !! 2025-09-09T04:52:11,232 ******************************************************************************** 2025-09-09T04:52:11,232 ############################ 2025-09-09T04:52:11,233 # Package would be ignored # 2025-09-09T04:52:11,233 ############################ 2025-09-09T04:52:11,233 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,233 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,233 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,233 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-09T04:52:11,233 to the `packages` configuration field. 2025-09-09T04:52:11,233 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,233 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,233 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,234 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,234 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,234 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-09T04:52:11,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,234 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,234 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,235 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,235 even if it does not contain any `.py` files. 2025-09-09T04:52:11,235 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,235 directory, all directories are treated like packages. 2025-09-09T04:52:11,235 ******************************************************************************** 2025-09-09T04:52:11,235 !! 2025-09-09T04:52:11,235 check.warn(importable) 2025-09-09T04:52:11,235 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,236 !! 2025-09-09T04:52:11,236 ******************************************************************************** 2025-09-09T04:52:11,236 ############################ 2025-09-09T04:52:11,236 # Package would be ignored # 2025-09-09T04:52:11,236 ############################ 2025-09-09T04:52:11,236 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-09T04:52:11,236 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,236 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,236 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-09T04:52:11,236 to the `packages` configuration field. 2025-09-09T04:52:11,237 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,237 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,237 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,237 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,237 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,237 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-09T04:52:11,237 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-09T04:52:11,237 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,238 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,238 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,238 even if it does not contain any `.py` files. 2025-09-09T04:52:11,238 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,238 directory, all directories are treated like packages. 2025-09-09T04:52:11,238 ******************************************************************************** 2025-09-09T04:52:11,239 !! 2025-09-09T04:52:11,239 check.warn(importable) 2025-09-09T04:52:11,239 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,239 !! 2025-09-09T04:52:11,239 ******************************************************************************** 2025-09-09T04:52:11,239 ############################ 2025-09-09T04:52:11,239 # Package would be ignored # 2025-09-09T04:52:11,239 ############################ 2025-09-09T04:52:11,239 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-09T04:52:11,239 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,240 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,240 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-09T04:52:11,240 to the `packages` configuration field. 2025-09-09T04:52:11,240 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,240 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,240 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,240 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,241 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-09T04:52:11,241 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-09T04:52:11,241 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,241 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,241 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,241 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,241 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,242 even if it does not contain any `.py` files. 2025-09-09T04:52:11,242 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,242 directory, all directories are treated like packages. 2025-09-09T04:52:11,242 ******************************************************************************** 2025-09-09T04:52:11,242 !! 2025-09-09T04:52:11,242 check.warn(importable) 2025-09-09T04:52:11,242 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,242 !! 2025-09-09T04:52:11,243 ******************************************************************************** 2025-09-09T04:52:11,243 ############################ 2025-09-09T04:52:11,243 # Package would be ignored # 2025-09-09T04:52:11,243 ############################ 2025-09-09T04:52:11,243 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,243 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,243 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,243 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-09T04:52:11,243 to the `packages` configuration field. 2025-09-09T04:52:11,243 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,244 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,244 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,244 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,244 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,244 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-09T04:52:11,244 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,244 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,244 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,245 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,245 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,245 even if it does not contain any `.py` files. 2025-09-09T04:52:11,245 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,245 directory, all directories are treated like packages. 2025-09-09T04:52:11,245 ******************************************************************************** 2025-09-09T04:52:11,246 !! 2025-09-09T04:52:11,246 check.warn(importable) 2025-09-09T04:52:11,246 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,246 !! 2025-09-09T04:52:11,246 ******************************************************************************** 2025-09-09T04:52:11,246 ############################ 2025-09-09T04:52:11,246 # Package would be ignored # 2025-09-09T04:52:11,246 ############################ 2025-09-09T04:52:11,246 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-09T04:52:11,246 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,246 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,247 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-09T04:52:11,247 to the `packages` configuration field. 2025-09-09T04:52:11,247 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,247 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,247 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,247 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,247 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,247 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-09T04:52:11,248 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-09T04:52:11,248 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,248 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,248 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,248 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,248 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,248 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,248 even if it does not contain any `.py` files. 2025-09-09T04:52:11,249 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,249 directory, all directories are treated like packages. 2025-09-09T04:52:11,249 ******************************************************************************** 2025-09-09T04:52:11,249 !! 2025-09-09T04:52:11,249 check.warn(importable) 2025-09-09T04:52:11,249 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,249 !! 2025-09-09T04:52:11,249 ******************************************************************************** 2025-09-09T04:52:11,249 ############################ 2025-09-09T04:52:11,249 # Package would be ignored # 2025-09-09T04:52:11,250 ############################ 2025-09-09T04:52:11,250 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,250 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,250 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,250 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-09T04:52:11,250 to the `packages` configuration field. 2025-09-09T04:52:11,250 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,250 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,251 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,251 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-09T04:52:11,251 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-09T04:52:11,251 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,251 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,251 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,251 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,251 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,252 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,252 even if it does not contain any `.py` files. 2025-09-09T04:52:11,252 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,252 directory, all directories are treated like packages. 2025-09-09T04:52:11,252 ******************************************************************************** 2025-09-09T04:52:11,252 !! 2025-09-09T04:52:11,252 check.warn(importable) 2025-09-09T04:52:11,252 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,252 !! 2025-09-09T04:52:11,253 ******************************************************************************** 2025-09-09T04:52:11,253 ############################ 2025-09-09T04:52:11,253 # Package would be ignored # 2025-09-09T04:52:11,253 ############################ 2025-09-09T04:52:11,253 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,253 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,253 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,253 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,253 to the `packages` configuration field. 2025-09-09T04:52:11,254 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,254 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,254 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,254 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,254 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-09T04:52:11,254 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,255 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,255 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,255 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,255 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,255 even if it does not contain any `.py` files. 2025-09-09T04:52:11,255 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,255 directory, all directories are treated like packages. 2025-09-09T04:52:11,256 ******************************************************************************** 2025-09-09T04:52:11,256 !! 2025-09-09T04:52:11,256 check.warn(importable) 2025-09-09T04:52:11,256 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,256 !! 2025-09-09T04:52:11,256 ******************************************************************************** 2025-09-09T04:52:11,256 ############################ 2025-09-09T04:52:11,256 # Package would be ignored # 2025-09-09T04:52:11,256 ############################ 2025-09-09T04:52:11,256 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-09T04:52:11,257 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,257 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,257 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-09T04:52:11,257 to the `packages` configuration field. 2025-09-09T04:52:11,257 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,257 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,257 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,257 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,258 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,258 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-09T04:52:11,258 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-09T04:52:11,258 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,258 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,258 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,258 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,259 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,259 even if it does not contain any `.py` files. 2025-09-09T04:52:11,259 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,259 directory, all directories are treated like packages. 2025-09-09T04:52:11,259 ******************************************************************************** 2025-09-09T04:52:11,259 !! 2025-09-09T04:52:11,259 check.warn(importable) 2025-09-09T04:52:11,259 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,259 !! 2025-09-09T04:52:11,260 ******************************************************************************** 2025-09-09T04:52:11,260 ############################ 2025-09-09T04:52:11,260 # Package would be ignored # 2025-09-09T04:52:11,260 ############################ 2025-09-09T04:52:11,260 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-09T04:52:11,260 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,260 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,260 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-09T04:52:11,260 to the `packages` configuration field. 2025-09-09T04:52:11,260 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,261 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,261 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,261 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-09T04:52:11,261 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-09T04:52:11,261 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,261 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,262 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,262 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,262 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,262 even if it does not contain any `.py` files. 2025-09-09T04:52:11,262 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,262 directory, all directories are treated like packages. 2025-09-09T04:52:11,262 ******************************************************************************** 2025-09-09T04:52:11,263 !! 2025-09-09T04:52:11,263 check.warn(importable) 2025-09-09T04:52:11,263 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,263 !! 2025-09-09T04:52:11,263 ******************************************************************************** 2025-09-09T04:52:11,263 ############################ 2025-09-09T04:52:11,263 # Package would be ignored # 2025-09-09T04:52:11,263 ############################ 2025-09-09T04:52:11,263 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,263 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,264 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,264 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-09T04:52:11,264 to the `packages` configuration field. 2025-09-09T04:52:11,264 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,264 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,264 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,264 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,264 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,265 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,265 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-09T04:52:11,265 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,265 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,265 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,265 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,265 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,265 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,266 even if it does not contain any `.py` files. 2025-09-09T04:52:11,266 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,266 directory, all directories are treated like packages. 2025-09-09T04:52:11,266 ******************************************************************************** 2025-09-09T04:52:11,266 !! 2025-09-09T04:52:11,266 check.warn(importable) 2025-09-09T04:52:11,266 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,266 !! 2025-09-09T04:52:11,266 ******************************************************************************** 2025-09-09T04:52:11,266 ############################ 2025-09-09T04:52:11,266 # Package would be ignored # 2025-09-09T04:52:11,267 ############################ 2025-09-09T04:52:11,267 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-09T04:52:11,267 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,267 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,267 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-09T04:52:11,267 to the `packages` configuration field. 2025-09-09T04:52:11,267 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,268 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,268 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,268 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,268 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-09T04:52:11,268 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-09T04:52:11,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,268 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,268 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,269 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,269 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,269 even if it does not contain any `.py` files. 2025-09-09T04:52:11,269 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,269 directory, all directories are treated like packages. 2025-09-09T04:52:11,269 ******************************************************************************** 2025-09-09T04:52:11,269 !! 2025-09-09T04:52:11,270 check.warn(importable) 2025-09-09T04:52:11,270 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,270 !! 2025-09-09T04:52:11,270 ******************************************************************************** 2025-09-09T04:52:11,270 ############################ 2025-09-09T04:52:11,270 # Package would be ignored # 2025-09-09T04:52:11,270 ############################ 2025-09-09T04:52:11,270 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-09T04:52:11,270 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,270 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,271 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-09T04:52:11,271 to the `packages` configuration field. 2025-09-09T04:52:11,271 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,271 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,271 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,271 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,271 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-09T04:52:11,272 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-09T04:52:11,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,272 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,272 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,272 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,272 even if it does not contain any `.py` files. 2025-09-09T04:52:11,273 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,273 directory, all directories are treated like packages. 2025-09-09T04:52:11,273 ******************************************************************************** 2025-09-09T04:52:11,273 !! 2025-09-09T04:52:11,273 check.warn(importable) 2025-09-09T04:52:11,273 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,273 !! 2025-09-09T04:52:11,273 ******************************************************************************** 2025-09-09T04:52:11,273 ############################ 2025-09-09T04:52:11,273 # Package would be ignored # 2025-09-09T04:52:11,273 ############################ 2025-09-09T04:52:11,274 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,274 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,274 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,274 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-09T04:52:11,274 to the `packages` configuration field. 2025-09-09T04:52:11,274 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,274 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,274 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,274 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,275 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,275 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,275 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-09T04:52:11,275 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,275 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,275 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,275 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,276 even if it does not contain any `.py` files. 2025-09-09T04:52:11,276 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,276 directory, all directories are treated like packages. 2025-09-09T04:52:11,276 ******************************************************************************** 2025-09-09T04:52:11,276 !! 2025-09-09T04:52:11,276 check.warn(importable) 2025-09-09T04:52:11,276 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,276 !! 2025-09-09T04:52:11,277 ******************************************************************************** 2025-09-09T04:52:11,277 ############################ 2025-09-09T04:52:11,277 # Package would be ignored # 2025-09-09T04:52:11,277 ############################ 2025-09-09T04:52:11,277 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-09T04:52:11,277 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,277 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,277 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-09T04:52:11,277 to the `packages` configuration field. 2025-09-09T04:52:11,277 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,278 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,278 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,278 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-09T04:52:11,278 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-09T04:52:11,278 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,278 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,278 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,279 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,279 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,279 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,279 even if it does not contain any `.py` files. 2025-09-09T04:52:11,279 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,279 directory, all directories are treated like packages. 2025-09-09T04:52:11,280 ******************************************************************************** 2025-09-09T04:52:11,280 !! 2025-09-09T04:52:11,280 check.warn(importable) 2025-09-09T04:52:11,280 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,280 !! 2025-09-09T04:52:11,280 ******************************************************************************** 2025-09-09T04:52:11,280 ############################ 2025-09-09T04:52:11,280 # Package would be ignored # 2025-09-09T04:52:11,280 ############################ 2025-09-09T04:52:11,280 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,281 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,281 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,281 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-09T04:52:11,281 to the `packages` configuration field. 2025-09-09T04:52:11,281 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,281 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,281 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,281 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,282 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-09T04:52:11,282 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-09T04:52:11,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,282 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,282 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,282 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,283 even if it does not contain any `.py` files. 2025-09-09T04:52:11,283 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,283 directory, all directories are treated like packages. 2025-09-09T04:52:11,283 ******************************************************************************** 2025-09-09T04:52:11,283 !! 2025-09-09T04:52:11,283 check.warn(importable) 2025-09-09T04:52:11,283 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,283 !! 2025-09-09T04:52:11,284 ******************************************************************************** 2025-09-09T04:52:11,284 ############################ 2025-09-09T04:52:11,284 # Package would be ignored # 2025-09-09T04:52:11,284 ############################ 2025-09-09T04:52:11,284 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,284 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,284 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,284 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,284 to the `packages` configuration field. 2025-09-09T04:52:11,284 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,285 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,285 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,285 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,285 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-09T04:52:11,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,285 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,286 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,286 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,286 even if it does not contain any `.py` files. 2025-09-09T04:52:11,286 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,286 directory, all directories are treated like packages. 2025-09-09T04:52:11,286 ******************************************************************************** 2025-09-09T04:52:11,286 !! 2025-09-09T04:52:11,287 check.warn(importable) 2025-09-09T04:52:11,287 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,287 !! 2025-09-09T04:52:11,287 ******************************************************************************** 2025-09-09T04:52:11,287 ############################ 2025-09-09T04:52:11,287 # Package would be ignored # 2025-09-09T04:52:11,287 ############################ 2025-09-09T04:52:11,287 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-09T04:52:11,287 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,287 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,288 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-09T04:52:11,288 to the `packages` configuration field. 2025-09-09T04:52:11,288 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,288 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,288 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,288 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,288 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-09T04:52:11,288 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-09T04:52:11,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,289 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,289 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,289 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,289 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,289 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,289 even if it does not contain any `.py` files. 2025-09-09T04:52:11,290 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,290 directory, all directories are treated like packages. 2025-09-09T04:52:11,290 ******************************************************************************** 2025-09-09T04:52:11,290 !! 2025-09-09T04:52:11,290 check.warn(importable) 2025-09-09T04:52:11,290 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,290 !! 2025-09-09T04:52:11,290 ******************************************************************************** 2025-09-09T04:52:11,290 ############################ 2025-09-09T04:52:11,290 # Package would be ignored # 2025-09-09T04:52:11,291 ############################ 2025-09-09T04:52:11,291 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-09T04:52:11,291 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,291 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,291 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-09T04:52:11,291 to the `packages` configuration field. 2025-09-09T04:52:11,291 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,291 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,291 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,292 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,292 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-09T04:52:11,292 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-09T04:52:11,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,292 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,292 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,292 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,293 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,293 even if it does not contain any `.py` files. 2025-09-09T04:52:11,293 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,293 directory, all directories are treated like packages. 2025-09-09T04:52:11,293 ******************************************************************************** 2025-09-09T04:52:11,293 !! 2025-09-09T04:52:11,294 check.warn(importable) 2025-09-09T04:52:11,294 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,294 !! 2025-09-09T04:52:11,294 ******************************************************************************** 2025-09-09T04:52:11,294 ############################ 2025-09-09T04:52:11,294 # Package would be ignored # 2025-09-09T04:52:11,294 ############################ 2025-09-09T04:52:11,294 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,294 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,294 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,295 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-09T04:52:11,295 to the `packages` configuration field. 2025-09-09T04:52:11,295 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,295 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,295 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,295 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,295 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,295 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,296 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-09T04:52:11,296 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,296 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,296 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,296 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,296 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,296 even if it does not contain any `.py` files. 2025-09-09T04:52:11,297 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,297 directory, all directories are treated like packages. 2025-09-09T04:52:11,297 ******************************************************************************** 2025-09-09T04:52:11,297 !! 2025-09-09T04:52:11,297 check.warn(importable) 2025-09-09T04:52:11,297 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-09T04:52:11,297 !! 2025-09-09T04:52:11,297 ******************************************************************************** 2025-09-09T04:52:11,297 ############################ 2025-09-09T04:52:11,297 # Package would be ignored # 2025-09-09T04:52:11,298 ############################ 2025-09-09T04:52:11,298 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-09T04:52:11,298 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,298 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,298 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-09T04:52:11,298 to the `packages` configuration field. 2025-09-09T04:52:11,298 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,298 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,299 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,299 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-09T04:52:11,299 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-09T04:52:11,299 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,299 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,299 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,300 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,300 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,300 even if it does not contain any `.py` files. 2025-09-09T04:52:11,300 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,300 directory, all directories are treated like packages. 2025-09-09T04:52:11,300 ******************************************************************************** 2025-09-09T04:52:11,300 !! 2025-09-09T04:52:11,300 check.warn(importable) 2025-09-09T04:52:11,300 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,301 !! 2025-09-09T04:52:11,301 ******************************************************************************** 2025-09-09T04:52:11,301 ############################ 2025-09-09T04:52:11,301 # Package would be ignored # 2025-09-09T04:52:11,301 ############################ 2025-09-09T04:52:11,301 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-09T04:52:11,301 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,301 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,301 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-09T04:52:11,301 to the `packages` configuration field. 2025-09-09T04:52:11,302 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,302 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,302 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,302 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,302 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-09T04:52:11,302 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-09T04:52:11,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,303 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,303 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,303 even if it does not contain any `.py` files. 2025-09-09T04:52:11,303 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,303 directory, all directories are treated like packages. 2025-09-09T04:52:11,304 ******************************************************************************** 2025-09-09T04:52:11,304 !! 2025-09-09T04:52:11,304 check.warn(importable) 2025-09-09T04:52:11,304 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-09T04:52:11,304 !! 2025-09-09T04:52:11,304 ******************************************************************************** 2025-09-09T04:52:11,304 ############################ 2025-09-09T04:52:11,304 # Package would be ignored # 2025-09-09T04:52:11,304 ############################ 2025-09-09T04:52:11,305 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-09T04:52:11,305 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,305 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,305 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-09T04:52:11,305 to the `packages` configuration field. 2025-09-09T04:52:11,305 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,305 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,305 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,306 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-09T04:52:11,306 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-09T04:52:11,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,306 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,306 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,306 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,306 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,307 even if it does not contain any `.py` files. 2025-09-09T04:52:11,307 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,307 directory, all directories are treated like packages. 2025-09-09T04:52:11,307 ******************************************************************************** 2025-09-09T04:52:11,307 !! 2025-09-09T04:52:11,307 check.warn(importable) 2025-09-09T04:52:11,307 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,307 !! 2025-09-09T04:52:11,308 ******************************************************************************** 2025-09-09T04:52:11,308 ############################ 2025-09-09T04:52:11,308 # Package would be ignored # 2025-09-09T04:52:11,308 ############################ 2025-09-09T04:52:11,308 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-09T04:52:11,308 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,308 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,308 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-09T04:52:11,308 to the `packages` configuration field. 2025-09-09T04:52:11,309 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,309 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,309 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,309 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,309 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-09T04:52:11,309 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-09T04:52:11,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,309 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,310 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,310 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,310 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,310 even if it does not contain any `.py` files. 2025-09-09T04:52:11,310 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,310 directory, all directories are treated like packages. 2025-09-09T04:52:11,310 ******************************************************************************** 2025-09-09T04:52:11,311 !! 2025-09-09T04:52:11,311 check.warn(importable) 2025-09-09T04:52:11,311 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,311 !! 2025-09-09T04:52:11,311 ******************************************************************************** 2025-09-09T04:52:11,311 ############################ 2025-09-09T04:52:11,311 # Package would be ignored # 2025-09-09T04:52:11,311 ############################ 2025-09-09T04:52:11,311 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-09T04:52:11,311 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,312 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,312 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-09T04:52:11,312 to the `packages` configuration field. 2025-09-09T04:52:11,312 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,312 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,312 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,312 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,313 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-09T04:52:11,313 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-09T04:52:11,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,313 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,313 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,313 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,313 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,314 even if it does not contain any `.py` files. 2025-09-09T04:52:11,314 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,314 directory, all directories are treated like packages. 2025-09-09T04:52:11,314 ******************************************************************************** 2025-09-09T04:52:11,314 !! 2025-09-09T04:52:11,314 check.warn(importable) 2025-09-09T04:52:11,314 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,314 !! 2025-09-09T04:52:11,314 ******************************************************************************** 2025-09-09T04:52:11,314 ############################ 2025-09-09T04:52:11,315 # Package would be ignored # 2025-09-09T04:52:11,315 ############################ 2025-09-09T04:52:11,315 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,315 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,315 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,315 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-09T04:52:11,315 to the `packages` configuration field. 2025-09-09T04:52:11,315 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,315 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,316 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,316 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,316 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-09T04:52:11,316 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-09T04:52:11,316 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,316 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,316 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,317 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,317 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,317 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,317 even if it does not contain any `.py` files. 2025-09-09T04:52:11,317 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,317 directory, all directories are treated like packages. 2025-09-09T04:52:11,317 ******************************************************************************** 2025-09-09T04:52:11,317 !! 2025-09-09T04:52:11,318 check.warn(importable) 2025-09-09T04:52:11,318 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-09T04:52:11,318 !! 2025-09-09T04:52:11,318 ******************************************************************************** 2025-09-09T04:52:11,318 ############################ 2025-09-09T04:52:11,318 # Package would be ignored # 2025-09-09T04:52:11,318 ############################ 2025-09-09T04:52:11,318 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-09T04:52:11,318 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,318 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,319 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-09T04:52:11,319 to the `packages` configuration field. 2025-09-09T04:52:11,319 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,319 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,319 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,319 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-09T04:52:11,320 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-09T04:52:11,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,320 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,320 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,320 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,320 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,320 even if it does not contain any `.py` files. 2025-09-09T04:52:11,321 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,321 directory, all directories are treated like packages. 2025-09-09T04:52:11,321 ******************************************************************************** 2025-09-09T04:52:11,321 !! 2025-09-09T04:52:11,321 check.warn(importable) 2025-09-09T04:52:11,321 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,321 !! 2025-09-09T04:52:11,321 ******************************************************************************** 2025-09-09T04:52:11,321 ############################ 2025-09-09T04:52:11,322 # Package would be ignored # 2025-09-09T04:52:11,322 ############################ 2025-09-09T04:52:11,322 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-09T04:52:11,322 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,322 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,322 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-09T04:52:11,322 to the `packages` configuration field. 2025-09-09T04:52:11,322 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,322 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,323 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,323 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,323 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-09T04:52:11,323 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-09T04:52:11,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,323 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,323 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,324 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,324 even if it does not contain any `.py` files. 2025-09-09T04:52:11,324 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,324 directory, all directories are treated like packages. 2025-09-09T04:52:11,324 ******************************************************************************** 2025-09-09T04:52:11,324 !! 2025-09-09T04:52:11,324 check.warn(importable) 2025-09-09T04:52:11,325 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-09T04:52:11,325 !! 2025-09-09T04:52:11,325 ******************************************************************************** 2025-09-09T04:52:11,325 ############################ 2025-09-09T04:52:11,325 # Package would be ignored # 2025-09-09T04:52:11,325 ############################ 2025-09-09T04:52:11,325 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-09T04:52:11,325 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,325 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,325 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-09T04:52:11,326 to the `packages` configuration field. 2025-09-09T04:52:11,326 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,326 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,326 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,326 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,326 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,326 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-09T04:52:11,326 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-09T04:52:11,327 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,327 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,327 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,327 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,327 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,327 even if it does not contain any `.py` files. 2025-09-09T04:52:11,327 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,328 directory, all directories are treated like packages. 2025-09-09T04:52:11,328 ******************************************************************************** 2025-09-09T04:52:11,328 !! 2025-09-09T04:52:11,328 check.warn(importable) 2025-09-09T04:52:11,328 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,328 !! 2025-09-09T04:52:11,328 ******************************************************************************** 2025-09-09T04:52:11,328 ############################ 2025-09-09T04:52:11,328 # Package would be ignored # 2025-09-09T04:52:11,328 ############################ 2025-09-09T04:52:11,329 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-09T04:52:11,329 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,329 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,329 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-09T04:52:11,329 to the `packages` configuration field. 2025-09-09T04:52:11,329 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,329 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,329 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,330 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,330 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,330 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-09T04:52:11,330 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-09T04:52:11,330 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,330 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,330 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,330 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,331 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,331 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,331 even if it does not contain any `.py` files. 2025-09-09T04:52:11,331 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,331 directory, all directories are treated like packages. 2025-09-09T04:52:11,331 ******************************************************************************** 2025-09-09T04:52:11,331 !! 2025-09-09T04:52:11,331 check.warn(importable) 2025-09-09T04:52:11,332 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,332 !! 2025-09-09T04:52:11,332 ******************************************************************************** 2025-09-09T04:52:11,332 ############################ 2025-09-09T04:52:11,332 # Package would be ignored # 2025-09-09T04:52:11,332 ############################ 2025-09-09T04:52:11,332 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,332 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,332 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,332 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-09T04:52:11,333 to the `packages` configuration field. 2025-09-09T04:52:11,333 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,333 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,333 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,333 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,333 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-09T04:52:11,333 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-09T04:52:11,334 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,334 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,334 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,334 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,334 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,334 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,334 even if it does not contain any `.py` files. 2025-09-09T04:52:11,334 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,335 directory, all directories are treated like packages. 2025-09-09T04:52:11,335 ******************************************************************************** 2025-09-09T04:52:11,335 !! 2025-09-09T04:52:11,335 check.warn(importable) 2025-09-09T04:52:11,335 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,335 !! 2025-09-09T04:52:11,335 ******************************************************************************** 2025-09-09T04:52:11,335 ############################ 2025-09-09T04:52:11,335 # Package would be ignored # 2025-09-09T04:52:11,335 ############################ 2025-09-09T04:52:11,336 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-09T04:52:11,336 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,336 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,336 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-09T04:52:11,336 to the `packages` configuration field. 2025-09-09T04:52:11,336 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,336 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,336 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,336 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,337 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-09T04:52:11,337 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-09T04:52:11,337 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,337 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,337 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,337 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,338 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,338 even if it does not contain any `.py` files. 2025-09-09T04:52:11,338 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,338 directory, all directories are treated like packages. 2025-09-09T04:52:11,338 ******************************************************************************** 2025-09-09T04:52:11,338 !! 2025-09-09T04:52:11,338 check.warn(importable) 2025-09-09T04:52:11,338 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,338 !! 2025-09-09T04:52:11,339 ******************************************************************************** 2025-09-09T04:52:11,339 ############################ 2025-09-09T04:52:11,339 # Package would be ignored # 2025-09-09T04:52:11,339 ############################ 2025-09-09T04:52:11,339 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-09T04:52:11,339 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,339 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,339 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-09T04:52:11,339 to the `packages` configuration field. 2025-09-09T04:52:11,339 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,340 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,340 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,340 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,340 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-09T04:52:11,340 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-09T04:52:11,340 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,340 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,340 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,341 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,341 even if it does not contain any `.py` files. 2025-09-09T04:52:11,341 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,341 directory, all directories are treated like packages. 2025-09-09T04:52:11,341 ******************************************************************************** 2025-09-09T04:52:11,341 !! 2025-09-09T04:52:11,342 check.warn(importable) 2025-09-09T04:52:11,342 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,342 !! 2025-09-09T04:52:11,342 ******************************************************************************** 2025-09-09T04:52:11,342 ############################ 2025-09-09T04:52:11,342 # Package would be ignored # 2025-09-09T04:52:11,342 ############################ 2025-09-09T04:52:11,342 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,342 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,343 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,343 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,343 to the `packages` configuration field. 2025-09-09T04:52:11,343 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,343 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,343 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,343 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,343 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,344 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,344 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-09T04:52:11,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,344 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,344 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,345 even if it does not contain any `.py` files. 2025-09-09T04:52:11,345 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,345 directory, all directories are treated like packages. 2025-09-09T04:52:11,345 ******************************************************************************** 2025-09-09T04:52:11,345 !! 2025-09-09T04:52:11,345 check.warn(importable) 2025-09-09T04:52:11,345 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-09T04:52:11,345 !! 2025-09-09T04:52:11,345 ******************************************************************************** 2025-09-09T04:52:11,346 ############################ 2025-09-09T04:52:11,346 # Package would be ignored # 2025-09-09T04:52:11,346 ############################ 2025-09-09T04:52:11,346 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-09T04:52:11,346 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,346 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,346 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-09T04:52:11,346 to the `packages` configuration field. 2025-09-09T04:52:11,346 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,346 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,346 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,347 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,347 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,347 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-09T04:52:11,347 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-09T04:52:11,347 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,347 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,347 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,347 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,348 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,348 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,348 even if it does not contain any `.py` files. 2025-09-09T04:52:11,348 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,348 directory, all directories are treated like packages. 2025-09-09T04:52:11,348 ******************************************************************************** 2025-09-09T04:52:11,348 !! 2025-09-09T04:52:11,348 check.warn(importable) 2025-09-09T04:52:11,349 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,349 !! 2025-09-09T04:52:11,349 ******************************************************************************** 2025-09-09T04:52:11,349 ############################ 2025-09-09T04:52:11,349 # Package would be ignored # 2025-09-09T04:52:11,349 ############################ 2025-09-09T04:52:11,349 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-09T04:52:11,349 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,349 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,349 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-09T04:52:11,350 to the `packages` configuration field. 2025-09-09T04:52:11,350 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,350 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,350 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,350 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,350 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,350 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-09T04:52:11,350 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-09T04:52:11,351 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,351 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,351 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,351 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,351 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,351 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,351 even if it does not contain any `.py` files. 2025-09-09T04:52:11,351 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,351 directory, all directories are treated like packages. 2025-09-09T04:52:11,352 ******************************************************************************** 2025-09-09T04:52:11,352 !! 2025-09-09T04:52:11,352 check.warn(importable) 2025-09-09T04:52:11,352 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,352 !! 2025-09-09T04:52:11,352 ******************************************************************************** 2025-09-09T04:52:11,352 ############################ 2025-09-09T04:52:11,352 # Package would be ignored # 2025-09-09T04:52:11,352 ############################ 2025-09-09T04:52:11,352 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,353 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,353 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,353 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-09T04:52:11,353 to the `packages` configuration field. 2025-09-09T04:52:11,353 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,353 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,353 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,353 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,354 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,354 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-09T04:52:11,354 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-09T04:52:11,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,354 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,354 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,354 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,355 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,355 even if it does not contain any `.py` files. 2025-09-09T04:52:11,355 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,355 directory, all directories are treated like packages. 2025-09-09T04:52:11,355 ******************************************************************************** 2025-09-09T04:52:11,355 !! 2025-09-09T04:52:11,355 check.warn(importable) 2025-09-09T04:52:11,355 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,355 !! 2025-09-09T04:52:11,356 ******************************************************************************** 2025-09-09T04:52:11,356 ############################ 2025-09-09T04:52:11,356 # Package would be ignored # 2025-09-09T04:52:11,356 ############################ 2025-09-09T04:52:11,356 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-09T04:52:11,356 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,356 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,356 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-09T04:52:11,356 to the `packages` configuration field. 2025-09-09T04:52:11,357 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,357 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,357 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,357 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,357 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-09T04:52:11,357 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-09T04:52:11,357 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,357 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,358 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,358 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,358 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,358 even if it does not contain any `.py` files. 2025-09-09T04:52:11,358 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,358 directory, all directories are treated like packages. 2025-09-09T04:52:11,358 ******************************************************************************** 2025-09-09T04:52:11,359 !! 2025-09-09T04:52:11,359 check.warn(importable) 2025-09-09T04:52:11,359 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-09T04:52:11,359 !! 2025-09-09T04:52:11,359 ******************************************************************************** 2025-09-09T04:52:11,359 ############################ 2025-09-09T04:52:11,359 # Package would be ignored # 2025-09-09T04:52:11,359 ############################ 2025-09-09T04:52:11,359 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-09T04:52:11,359 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,360 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,360 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-09T04:52:11,360 to the `packages` configuration field. 2025-09-09T04:52:11,360 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,360 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,360 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,360 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,361 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-09T04:52:11,361 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-09T04:52:11,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,361 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,361 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,361 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,362 even if it does not contain any `.py` files. 2025-09-09T04:52:11,362 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,362 directory, all directories are treated like packages. 2025-09-09T04:52:11,362 ******************************************************************************** 2025-09-09T04:52:11,362 !! 2025-09-09T04:52:11,362 check.warn(importable) 2025-09-09T04:52:11,362 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.create_membrane' is absent from the `packages` configuration. 2025-09-09T04:52:11,362 !! 2025-09-09T04:52:11,362 ******************************************************************************** 2025-09-09T04:52:11,362 ############################ 2025-09-09T04:52:11,363 # Package would be ignored # 2025-09-09T04:52:11,363 ############################ 2025-09-09T04:52:11,363 Python recognizes 'lightdock.test.bin.post.golden_data.create_membrane' as an importable package[^1], 2025-09-09T04:52:11,363 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,363 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,363 package, please make sure that 'lightdock.test.bin.post.golden_data.create_membrane' is explicitly added 2025-09-09T04:52:11,363 to the `packages` configuration field. 2025-09-09T04:52:11,363 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,363 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,363 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,364 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,364 If you don't want 'lightdock.test.bin.post.golden_data.create_membrane' to be distributed and are 2025-09-09T04:52:11,364 already explicitly excluding 'lightdock.test.bin.post.golden_data.create_membrane' via 2025-09-09T04:52:11,364 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,364 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,364 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,364 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,365 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,365 even if it does not contain any `.py` files. 2025-09-09T04:52:11,365 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,365 directory, all directories are treated like packages. 2025-09-09T04:52:11,365 ******************************************************************************** 2025-09-09T04:52:11,365 !! 2025-09-09T04:52:11,365 check.warn(importable) 2025-09-09T04:52:11,365 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-09T04:52:11,366 !! 2025-09-09T04:52:11,366 ******************************************************************************** 2025-09-09T04:52:11,366 ############################ 2025-09-09T04:52:11,366 # Package would be ignored # 2025-09-09T04:52:11,366 ############################ 2025-09-09T04:52:11,366 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-09T04:52:11,366 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,366 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,366 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-09T04:52:11,366 to the `packages` configuration field. 2025-09-09T04:52:11,367 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,367 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,367 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,367 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,367 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-09T04:52:11,368 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-09T04:52:11,368 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,368 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,368 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,368 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,368 even if it does not contain any `.py` files. 2025-09-09T04:52:11,369 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,369 directory, all directories are treated like packages. 2025-09-09T04:52:11,369 ******************************************************************************** 2025-09-09T04:52:11,369 !! 2025-09-09T04:52:11,369 check.warn(importable) 2025-09-09T04:52:11,369 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-09T04:52:11,369 !! 2025-09-09T04:52:11,369 ******************************************************************************** 2025-09-09T04:52:11,369 ############################ 2025-09-09T04:52:11,369 # Package would be ignored # 2025-09-09T04:52:11,370 ############################ 2025-09-09T04:52:11,370 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-09T04:52:11,370 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,370 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,370 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-09T04:52:11,370 to the `packages` configuration field. 2025-09-09T04:52:11,370 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,370 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,370 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,371 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,371 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,371 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-09T04:52:11,371 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-09T04:52:11,371 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,371 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,371 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,372 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,372 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,372 even if it does not contain any `.py` files. 2025-09-09T04:52:11,372 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,372 directory, all directories are treated like packages. 2025-09-09T04:52:11,372 ******************************************************************************** 2025-09-09T04:52:11,372 !! 2025-09-09T04:52:11,372 check.warn(importable) 2025-09-09T04:52:11,372 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,373 !! 2025-09-09T04:52:11,373 ******************************************************************************** 2025-09-09T04:52:11,373 ############################ 2025-09-09T04:52:11,373 # Package would be ignored # 2025-09-09T04:52:11,373 ############################ 2025-09-09T04:52:11,373 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,373 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,373 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,373 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-09T04:52:11,373 to the `packages` configuration field. 2025-09-09T04:52:11,374 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,374 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,374 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,374 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-09T04:52:11,374 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-09T04:52:11,374 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,374 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,375 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,375 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,375 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,375 even if it does not contain any `.py` files. 2025-09-09T04:52:11,375 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,375 directory, all directories are treated like packages. 2025-09-09T04:52:11,375 ******************************************************************************** 2025-09-09T04:52:11,376 !! 2025-09-09T04:52:11,376 check.warn(importable) 2025-09-09T04:52:11,376 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-09T04:52:11,376 !! 2025-09-09T04:52:11,376 ******************************************************************************** 2025-09-09T04:52:11,376 ############################ 2025-09-09T04:52:11,376 # Package would be ignored # 2025-09-09T04:52:11,376 ############################ 2025-09-09T04:52:11,376 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-09T04:52:11,376 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,377 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,377 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-09T04:52:11,377 to the `packages` configuration field. 2025-09-09T04:52:11,377 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,377 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,377 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,377 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,378 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-09T04:52:11,378 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-09T04:52:11,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,378 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,378 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,379 even if it does not contain any `.py` files. 2025-09-09T04:52:11,379 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,379 directory, all directories are treated like packages. 2025-09-09T04:52:11,379 ******************************************************************************** 2025-09-09T04:52:11,379 !! 2025-09-09T04:52:11,379 check.warn(importable) 2025-09-09T04:52:11,379 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-09T04:52:11,379 !! 2025-09-09T04:52:11,379 ******************************************************************************** 2025-09-09T04:52:11,380 ############################ 2025-09-09T04:52:11,380 # Package would be ignored # 2025-09-09T04:52:11,380 ############################ 2025-09-09T04:52:11,380 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-09T04:52:11,380 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,380 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,380 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-09T04:52:11,380 to the `packages` configuration field. 2025-09-09T04:52:11,380 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,381 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,381 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,381 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,381 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-09T04:52:11,381 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-09T04:52:11,381 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,381 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,381 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,382 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,382 even if it does not contain any `.py` files. 2025-09-09T04:52:11,382 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,382 directory, all directories are treated like packages. 2025-09-09T04:52:11,382 ******************************************************************************** 2025-09-09T04:52:11,383 !! 2025-09-09T04:52:11,383 check.warn(importable) 2025-09-09T04:52:11,383 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-09T04:52:11,383 !! 2025-09-09T04:52:11,383 ******************************************************************************** 2025-09-09T04:52:11,383 ############################ 2025-09-09T04:52:11,383 # Package would be ignored # 2025-09-09T04:52:11,383 ############################ 2025-09-09T04:52:11,383 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-09T04:52:11,383 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,383 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,384 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-09T04:52:11,384 to the `packages` configuration field. 2025-09-09T04:52:11,384 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,384 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,384 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,384 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,384 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,384 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-09T04:52:11,385 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-09T04:52:11,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,385 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,385 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,385 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,385 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,385 even if it does not contain any `.py` files. 2025-09-09T04:52:11,386 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,386 directory, all directories are treated like packages. 2025-09-09T04:52:11,386 ******************************************************************************** 2025-09-09T04:52:11,386 !! 2025-09-09T04:52:11,386 check.warn(importable) 2025-09-09T04:52:11,386 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-09T04:52:11,386 !! 2025-09-09T04:52:11,386 ******************************************************************************** 2025-09-09T04:52:11,386 ############################ 2025-09-09T04:52:11,386 # Package would be ignored # 2025-09-09T04:52:11,386 ############################ 2025-09-09T04:52:11,387 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-09T04:52:11,387 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,387 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,387 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-09T04:52:11,387 to the `packages` configuration field. 2025-09-09T04:52:11,387 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,387 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,387 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,387 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,388 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,388 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-09T04:52:11,388 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-09T04:52:11,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,388 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,388 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,388 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,389 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,389 even if it does not contain any `.py` files. 2025-09-09T04:52:11,389 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,389 directory, all directories are treated like packages. 2025-09-09T04:52:11,389 ******************************************************************************** 2025-09-09T04:52:11,389 !! 2025-09-09T04:52:11,389 check.warn(importable) 2025-09-09T04:52:11,389 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-09T04:52:11,389 !! 2025-09-09T04:52:11,390 ******************************************************************************** 2025-09-09T04:52:11,390 ############################ 2025-09-09T04:52:11,390 # Package would be ignored # 2025-09-09T04:52:11,390 ############################ 2025-09-09T04:52:11,390 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-09T04:52:11,390 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,390 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,390 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-09T04:52:11,390 to the `packages` configuration field. 2025-09-09T04:52:11,391 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,391 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,391 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,391 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-09T04:52:11,391 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-09T04:52:11,391 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,391 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,392 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,392 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,392 even if it does not contain any `.py` files. 2025-09-09T04:52:11,392 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,392 directory, all directories are treated like packages. 2025-09-09T04:52:11,393 ******************************************************************************** 2025-09-09T04:52:11,393 !! 2025-09-09T04:52:11,393 check.warn(importable) 2025-09-09T04:52:11,393 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-09T04:52:11,393 !! 2025-09-09T04:52:11,393 ******************************************************************************** 2025-09-09T04:52:11,393 ############################ 2025-09-09T04:52:11,393 # Package would be ignored # 2025-09-09T04:52:11,393 ############################ 2025-09-09T04:52:11,393 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-09T04:52:11,394 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,394 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,394 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-09T04:52:11,394 to the `packages` configuration field. 2025-09-09T04:52:11,394 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,394 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,394 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,395 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,395 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-09T04:52:11,395 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-09T04:52:11,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,395 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,395 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,395 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,396 even if it does not contain any `.py` files. 2025-09-09T04:52:11,396 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,396 directory, all directories are treated like packages. 2025-09-09T04:52:11,396 ******************************************************************************** 2025-09-09T04:52:11,396 !! 2025-09-09T04:52:11,396 check.warn(importable) 2025-09-09T04:52:11,396 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-09T04:52:11,397 !! 2025-09-09T04:52:11,397 ******************************************************************************** 2025-09-09T04:52:11,397 ############################ 2025-09-09T04:52:11,397 # Package would be ignored # 2025-09-09T04:52:11,397 ############################ 2025-09-09T04:52:11,397 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-09T04:52:11,397 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,397 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,397 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-09T04:52:11,397 to the `packages` configuration field. 2025-09-09T04:52:11,398 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,398 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,398 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,398 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,398 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-09T04:52:11,398 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-09T04:52:11,398 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,399 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,399 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,399 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,399 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,399 even if it does not contain any `.py` files. 2025-09-09T04:52:11,399 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,399 directory, all directories are treated like packages. 2025-09-09T04:52:11,400 ******************************************************************************** 2025-09-09T04:52:11,400 !! 2025-09-09T04:52:11,400 check.warn(importable) 2025-09-09T04:52:11,400 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,400 !! 2025-09-09T04:52:11,400 ******************************************************************************** 2025-09-09T04:52:11,400 ############################ 2025-09-09T04:52:11,400 # Package would be ignored # 2025-09-09T04:52:11,400 ############################ 2025-09-09T04:52:11,401 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,401 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,401 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,401 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-09T04:52:11,401 to the `packages` configuration field. 2025-09-09T04:52:11,401 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,401 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,401 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,402 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,402 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-09T04:52:11,402 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-09T04:52:11,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,402 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,402 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,402 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,403 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,403 even if it does not contain any `.py` files. 2025-09-09T04:52:11,403 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,403 directory, all directories are treated like packages. 2025-09-09T04:52:11,403 ******************************************************************************** 2025-09-09T04:52:11,403 !! 2025-09-09T04:52:11,403 check.warn(importable) 2025-09-09T04:52:11,403 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-09T04:52:11,404 !! 2025-09-09T04:52:11,404 ******************************************************************************** 2025-09-09T04:52:11,404 ############################ 2025-09-09T04:52:11,404 # Package would be ignored # 2025-09-09T04:52:11,404 ############################ 2025-09-09T04:52:11,404 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-09T04:52:11,404 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,404 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,404 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-09T04:52:11,405 to the `packages` configuration field. 2025-09-09T04:52:11,405 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,405 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,405 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,405 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-09T04:52:11,405 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-09T04:52:11,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,406 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,406 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,406 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,406 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,406 even if it does not contain any `.py` files. 2025-09-09T04:52:11,406 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,406 directory, all directories are treated like packages. 2025-09-09T04:52:11,407 ******************************************************************************** 2025-09-09T04:52:11,407 !! 2025-09-09T04:52:11,407 check.warn(importable) 2025-09-09T04:52:11,407 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-09T04:52:11,407 !! 2025-09-09T04:52:11,407 ******************************************************************************** 2025-09-09T04:52:11,407 ############################ 2025-09-09T04:52:11,407 # Package would be ignored # 2025-09-09T04:52:11,407 ############################ 2025-09-09T04:52:11,408 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-09T04:52:11,408 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,408 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,408 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-09T04:52:11,408 to the `packages` configuration field. 2025-09-09T04:52:11,408 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,408 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,408 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,408 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,409 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,409 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-09T04:52:11,409 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-09T04:52:11,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,409 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,409 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,409 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,409 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,410 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,410 even if it does not contain any `.py` files. 2025-09-09T04:52:11,410 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,410 directory, all directories are treated like packages. 2025-09-09T04:52:11,410 ******************************************************************************** 2025-09-09T04:52:11,410 !! 2025-09-09T04:52:11,410 check.warn(importable) 2025-09-09T04:52:11,410 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-09T04:52:11,410 !! 2025-09-09T04:52:11,411 ******************************************************************************** 2025-09-09T04:52:11,411 ############################ 2025-09-09T04:52:11,411 # Package would be ignored # 2025-09-09T04:52:11,411 ############################ 2025-09-09T04:52:11,411 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-09T04:52:11,411 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,411 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,411 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-09T04:52:11,411 to the `packages` configuration field. 2025-09-09T04:52:11,412 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,412 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,412 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,412 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,412 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-09T04:52:11,412 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-09T04:52:11,412 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,413 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,413 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,413 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,413 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,413 even if it does not contain any `.py` files. 2025-09-09T04:52:11,413 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,413 directory, all directories are treated like packages. 2025-09-09T04:52:11,413 ******************************************************************************** 2025-09-09T04:52:11,414 !! 2025-09-09T04:52:11,414 check.warn(importable) 2025-09-09T04:52:11,414 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,414 !! 2025-09-09T04:52:11,414 ******************************************************************************** 2025-09-09T04:52:11,414 ############################ 2025-09-09T04:52:11,414 # Package would be ignored # 2025-09-09T04:52:11,414 ############################ 2025-09-09T04:52:11,414 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-09T04:52:11,414 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,415 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,415 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-09T04:52:11,415 to the `packages` configuration field. 2025-09-09T04:52:11,415 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,415 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,415 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,416 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-09T04:52:11,416 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-09T04:52:11,416 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,416 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,416 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,416 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,417 even if it does not contain any `.py` files. 2025-09-09T04:52:11,417 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,417 directory, all directories are treated like packages. 2025-09-09T04:52:11,417 ******************************************************************************** 2025-09-09T04:52:11,417 !! 2025-09-09T04:52:11,417 check.warn(importable) 2025-09-09T04:52:11,417 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-09T04:52:11,417 !! 2025-09-09T04:52:11,418 ******************************************************************************** 2025-09-09T04:52:11,418 ############################ 2025-09-09T04:52:11,418 # Package would be ignored # 2025-09-09T04:52:11,418 ############################ 2025-09-09T04:52:11,418 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-09T04:52:11,418 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,418 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,418 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-09T04:52:11,418 to the `packages` configuration field. 2025-09-09T04:52:11,418 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,419 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,419 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,419 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,419 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-09T04:52:11,419 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-09T04:52:11,419 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,419 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,420 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,420 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,420 even if it does not contain any `.py` files. 2025-09-09T04:52:11,420 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,420 directory, all directories are treated like packages. 2025-09-09T04:52:11,420 ******************************************************************************** 2025-09-09T04:52:11,421 !! 2025-09-09T04:52:11,421 check.warn(importable) 2025-09-09T04:52:11,421 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,421 !! 2025-09-09T04:52:11,421 ******************************************************************************** 2025-09-09T04:52:11,421 ############################ 2025-09-09T04:52:11,421 # Package would be ignored # 2025-09-09T04:52:11,421 ############################ 2025-09-09T04:52:11,421 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-09T04:52:11,421 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,422 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,422 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-09T04:52:11,422 to the `packages` configuration field. 2025-09-09T04:52:11,422 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,422 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,422 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,422 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,423 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-09T04:52:11,423 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-09T04:52:11,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,423 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,423 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,423 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,423 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,424 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,424 even if it does not contain any `.py` files. 2025-09-09T04:52:11,424 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,424 directory, all directories are treated like packages. 2025-09-09T04:52:11,424 ******************************************************************************** 2025-09-09T04:52:11,424 !! 2025-09-09T04:52:11,424 check.warn(importable) 2025-09-09T04:52:11,424 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,424 !! 2025-09-09T04:52:11,424 ******************************************************************************** 2025-09-09T04:52:11,425 ############################ 2025-09-09T04:52:11,425 # Package would be ignored # 2025-09-09T04:52:11,425 ############################ 2025-09-09T04:52:11,425 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-09T04:52:11,425 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,425 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,425 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-09T04:52:11,425 to the `packages` configuration field. 2025-09-09T04:52:11,425 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,425 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,426 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,426 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,426 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-09T04:52:11,426 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-09T04:52:11,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,426 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,426 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,427 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,427 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,427 even if it does not contain any `.py` files. 2025-09-09T04:52:11,427 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,427 directory, all directories are treated like packages. 2025-09-09T04:52:11,427 ******************************************************************************** 2025-09-09T04:52:11,427 !! 2025-09-09T04:52:11,428 check.warn(importable) 2025-09-09T04:52:11,428 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,428 !! 2025-09-09T04:52:11,428 ******************************************************************************** 2025-09-09T04:52:11,428 ############################ 2025-09-09T04:52:11,428 # Package would be ignored # 2025-09-09T04:52:11,428 ############################ 2025-09-09T04:52:11,428 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-09T04:52:11,428 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,428 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,429 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-09T04:52:11,429 to the `packages` configuration field. 2025-09-09T04:52:11,429 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,429 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,429 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,429 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,429 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-09T04:52:11,430 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-09T04:52:11,430 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,430 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,430 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,430 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,431 even if it does not contain any `.py` files. 2025-09-09T04:52:11,431 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,431 directory, all directories are treated like packages. 2025-09-09T04:52:11,431 ******************************************************************************** 2025-09-09T04:52:11,431 !! 2025-09-09T04:52:11,431 check.warn(importable) 2025-09-09T04:52:11,431 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,431 !! 2025-09-09T04:52:11,431 ******************************************************************************** 2025-09-09T04:52:11,431 ############################ 2025-09-09T04:52:11,432 # Package would be ignored # 2025-09-09T04:52:11,432 ############################ 2025-09-09T04:52:11,432 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-09T04:52:11,432 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,432 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,432 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-09T04:52:11,432 to the `packages` configuration field. 2025-09-09T04:52:11,432 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,433 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,433 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,433 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,433 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-09T04:52:11,433 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-09T04:52:11,433 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,433 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,434 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,434 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,434 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,434 even if it does not contain any `.py` files. 2025-09-09T04:52:11,434 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,434 directory, all directories are treated like packages. 2025-09-09T04:52:11,434 ******************************************************************************** 2025-09-09T04:52:11,434 !! 2025-09-09T04:52:11,435 check.warn(importable) 2025-09-09T04:52:11,435 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.rotamer.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,435 !! 2025-09-09T04:52:11,435 ******************************************************************************** 2025-09-09T04:52:11,435 ############################ 2025-09-09T04:52:11,435 # Package would be ignored # 2025-09-09T04:52:11,435 ############################ 2025-09-09T04:52:11,435 Python recognizes 'lightdock.test.rotamer.golden_data' as an importable package[^1], 2025-09-09T04:52:11,435 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,436 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,436 package, please make sure that 'lightdock.test.rotamer.golden_data' is explicitly added 2025-09-09T04:52:11,436 to the `packages` configuration field. 2025-09-09T04:52:11,436 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,436 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,436 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,436 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,437 If you don't want 'lightdock.test.rotamer.golden_data' to be distributed and are 2025-09-09T04:52:11,437 already explicitly excluding 'lightdock.test.rotamer.golden_data' via 2025-09-09T04:52:11,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,437 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,437 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,437 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,438 even if it does not contain any `.py` files. 2025-09-09T04:52:11,438 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,438 directory, all directories are treated like packages. 2025-09-09T04:52:11,438 ******************************************************************************** 2025-09-09T04:52:11,438 !! 2025-09-09T04:52:11,438 check.warn(importable) 2025-09-09T04:52:11,438 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,438 !! 2025-09-09T04:52:11,438 ******************************************************************************** 2025-09-09T04:52:11,439 ############################ 2025-09-09T04:52:11,439 # Package would be ignored # 2025-09-09T04:52:11,439 ############################ 2025-09-09T04:52:11,439 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-09T04:52:11,439 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,439 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,439 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-09T04:52:11,439 to the `packages` configuration field. 2025-09-09T04:52:11,439 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,440 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,440 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,440 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-09T04:52:11,440 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-09T04:52:11,440 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,440 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,441 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,441 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,441 even if it does not contain any `.py` files. 2025-09-09T04:52:11,441 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,441 directory, all directories are treated like packages. 2025-09-09T04:52:11,441 ******************************************************************************** 2025-09-09T04:52:11,442 !! 2025-09-09T04:52:11,442 check.warn(importable) 2025-09-09T04:52:11,442 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,442 !! 2025-09-09T04:52:11,442 ******************************************************************************** 2025-09-09T04:52:11,442 ############################ 2025-09-09T04:52:11,442 # Package would be ignored # 2025-09-09T04:52:11,442 ############################ 2025-09-09T04:52:11,442 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-09T04:52:11,443 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,443 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,443 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-09T04:52:11,443 to the `packages` configuration field. 2025-09-09T04:52:11,443 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,443 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,443 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,444 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-09T04:52:11,444 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-09T04:52:11,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,444 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,444 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,444 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,445 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,445 even if it does not contain any `.py` files. 2025-09-09T04:52:11,445 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,445 directory, all directories are treated like packages. 2025-09-09T04:52:11,445 ******************************************************************************** 2025-09-09T04:52:11,445 !! 2025-09-09T04:52:11,445 check.warn(importable) 2025-09-09T04:52:11,446 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-09T04:52:11,446 !! 2025-09-09T04:52:11,446 ******************************************************************************** 2025-09-09T04:52:11,446 ############################ 2025-09-09T04:52:11,446 # Package would be ignored # 2025-09-09T04:52:11,446 ############################ 2025-09-09T04:52:11,446 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-09T04:52:11,446 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,446 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,447 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-09T04:52:11,447 to the `packages` configuration field. 2025-09-09T04:52:11,447 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,447 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,447 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,447 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-09T04:52:11,448 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-09T04:52:11,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,448 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,448 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,448 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,449 even if it does not contain any `.py` files. 2025-09-09T04:52:11,449 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,449 directory, all directories are treated like packages. 2025-09-09T04:52:11,449 ******************************************************************************** 2025-09-09T04:52:11,449 !! 2025-09-09T04:52:11,449 check.warn(importable) 2025-09-09T04:52:11,449 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-09T04:52:11,449 !! 2025-09-09T04:52:11,449 ******************************************************************************** 2025-09-09T04:52:11,450 ############################ 2025-09-09T04:52:11,450 # Package would be ignored # 2025-09-09T04:52:11,450 ############################ 2025-09-09T04:52:11,450 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-09T04:52:11,450 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,450 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,450 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-09T04:52:11,450 to the `packages` configuration field. 2025-09-09T04:52:11,450 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,450 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,451 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,451 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,451 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-09T04:52:11,451 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-09T04:52:11,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,451 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,451 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,452 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,452 even if it does not contain any `.py` files. 2025-09-09T04:52:11,452 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,452 directory, all directories are treated like packages. 2025-09-09T04:52:11,452 ******************************************************************************** 2025-09-09T04:52:11,453 !! 2025-09-09T04:52:11,453 check.warn(importable) 2025-09-09T04:52:11,453 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-09T04:52:11,453 !! 2025-09-09T04:52:11,453 ******************************************************************************** 2025-09-09T04:52:11,453 ############################ 2025-09-09T04:52:11,453 # Package would be ignored # 2025-09-09T04:52:11,453 ############################ 2025-09-09T04:52:11,453 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-09T04:52:11,453 but it is absent from setuptools' `packages` configuration. 2025-09-09T04:52:11,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T04:52:11,454 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-09T04:52:11,454 to the `packages` configuration field. 2025-09-09T04:52:11,454 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T04:52:11,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T04:52:11,454 instead of `find_packages(...)`/`find:`). 2025-09-09T04:52:11,454 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T04:52:11,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T04:52:11,455 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-09T04:52:11,455 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-09T04:52:11,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T04:52:11,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T04:52:11,455 combination with a more fine grained `package-data` configuration. 2025-09-09T04:52:11,455 You can read more about "package data files" on setuptools documentation page: 2025-09-09T04:52:11,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T04:52:11,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T04:52:11,456 even if it does not contain any `.py` files. 2025-09-09T04:52:11,456 On the other hand, currently there is no concept of package data 2025-09-09T04:52:11,456 directory, all directories are treated like packages. 2025-09-09T04:52:11,456 ******************************************************************************** 2025-09-09T04:52:11,456 !! 2025-09-09T04:52:11,456 check.warn(importable) 2025-09-09T04:52:11,456 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T04:52:11,456 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T04:52:11,456 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/lightdock_1czy_peptide.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/lightdock_1czy_protein.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/util/golden_data/pdbs.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T04:52:11,457 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T04:52:11,457 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T04:52:11,457 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T04:52:11,458 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T04:52:11,458 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T04:52:11,458 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,458 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,458 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,459 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,459 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,460 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,461 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,461 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,462 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,463 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,464 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,465 copying lightdock/test/scoring/golden_data/1azp_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,466 copying lightdock/test/scoring/golden_data/1azp_prot.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,466 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,467 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,468 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T04:52:11,470 creating build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T04:52:11,470 copying lightdock/test/rotamer/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T04:52:11,471 copying lightdock/test/rotamer/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/rotamer/golden_data 2025-09-09T04:52:11,472 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,472 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,473 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,476 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,477 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,478 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,479 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,480 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,480 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,481 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,481 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,482 copying lightdock/test/prep/golden_data/rst_4.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,482 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,483 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,483 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T04:52:11,484 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,484 copying lightdock/test/prep/golden_data/3p0g/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,485 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,486 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,486 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,488 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,488 copying lightdock/test/prep/golden_data/3p0g/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,490 copying lightdock/test/prep/golden_data/3p0g/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,490 copying lightdock/test/prep/golden_data/3p0g/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T04:52:11,491 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,491 copying lightdock/test/prep/golden_data/3p0g/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,492 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,492 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,493 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,493 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,494 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,494 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T04:52:11,495 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,495 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,496 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,496 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,497 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,498 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T04:52:11,498 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T04:52:11,498 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T04:52:11,499 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T04:52:11,500 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T04:52:11,500 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T04:52:11,501 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,501 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,502 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,503 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,503 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,504 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,504 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,505 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,505 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,506 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,506 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,507 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,507 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,508 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,508 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T04:52:11,509 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T04:52:11,509 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T04:52:11,510 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T04:52:11,510 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,511 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,511 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,512 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,513 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,513 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,514 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,515 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,516 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,516 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,517 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T04:52:11,517 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,517 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,518 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,519 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,519 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,520 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,520 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,521 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,521 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,522 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,523 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,523 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,524 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,524 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,525 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,525 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,526 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T04:52:11,526 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T04:52:11,527 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T04:52:11,527 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T04:52:11,528 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T04:52:11,528 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T04:52:11,529 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T04:52:11,529 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T04:52:11,529 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T04:52:11,530 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T04:52:11,531 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T04:52:11,531 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T04:52:11,531 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T04:52:11,532 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T04:52:11,532 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T04:52:11,533 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T04:52:11,533 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,534 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,534 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,535 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,536 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,536 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,537 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,538 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,539 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,539 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T04:52:11,540 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T04:52:11,540 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T04:52:11,541 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T04:52:11,541 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T04:52:11,542 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T04:52:11,542 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T04:52:11,543 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T04:52:11,543 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T04:52:11,544 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,544 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,545 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,546 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,546 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,547 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,547 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,548 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,549 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,550 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,550 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T04:52:11,551 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T04:52:11,551 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T04:52:11,552 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T04:52:11,552 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T04:52:11,553 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T04:52:11,553 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T04:52:11,553 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T04:52:11,554 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T04:52:11,555 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,555 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,555 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,556 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,557 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,558 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,558 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,559 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,560 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,560 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,561 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T04:52:11,561 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,562 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,562 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,563 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,564 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,564 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,565 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,565 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,566 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,566 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,567 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,568 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,568 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,569 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,569 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,570 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,571 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T04:52:11,571 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T04:52:11,572 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T04:52:11,572 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T04:52:11,573 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T04:52:11,573 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T04:52:11,574 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T04:52:11,574 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T04:52:11,575 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T04:52:11,575 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T04:52:11,576 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T04:52:11,576 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T04:52:11,577 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T04:52:11,578 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T04:52:11,578 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T04:52:11,579 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T04:52:11,579 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,580 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,580 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,582 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,582 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,583 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,583 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,584 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,585 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,585 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,586 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T04:52:11,587 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T04:52:11,587 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T04:52:11,587 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T04:52:11,588 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T04:52:11,588 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T04:52:11,589 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T04:52:11,589 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T04:52:11,590 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T04:52:11,590 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,590 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,591 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,593 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,593 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,594 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,595 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,597 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,597 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,598 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T04:52:11,598 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T04:52:11,598 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T04:52:11,599 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T04:52:11,600 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T04:52:11,600 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T04:52:11,601 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T04:52:11,601 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T04:52:11,602 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T04:52:11,602 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,602 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,603 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,605 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,605 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,606 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,607 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,608 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,609 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,610 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,615 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T04:52:11,616 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T04:52:11,616 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T04:52:11,617 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T04:52:11,618 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T04:52:11,618 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T04:52:11,619 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T04:52:11,619 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T04:52:11,620 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T04:52:11,621 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,621 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,622 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,623 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,624 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,624 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,625 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,625 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,626 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,627 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,627 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T04:52:11,628 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,628 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,629 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,629 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,630 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,630 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,631 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,632 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,632 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,633 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,633 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,634 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,634 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,635 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,636 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,636 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,637 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T04:52:11,637 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T04:52:11,637 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T04:52:11,638 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T04:52:11,638 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T04:52:11,639 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T04:52:11,639 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T04:52:11,640 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T04:52:11,640 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T04:52:11,641 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T04:52:11,641 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T04:52:11,642 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T04:52:11,642 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T04:52:11,643 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T04:52:11,643 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T04:52:11,643 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T04:52:11,644 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,644 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,645 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,646 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,646 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,647 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,648 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,649 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,649 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,650 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,651 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T04:52:11,651 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T04:52:11,651 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T04:52:11,652 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T04:52:11,653 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T04:52:11,653 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T04:52:11,654 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T04:52:11,654 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T04:52:11,655 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T04:52:11,656 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T04:52:11,656 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,656 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,657 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,658 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,659 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,660 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,660 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,661 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,662 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,663 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,664 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T04:52:11,664 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T04:52:11,664 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T04:52:11,665 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T04:52:11,666 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T04:52:11,667 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T04:52:11,667 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T04:52:11,667 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T04:52:11,668 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T04:52:11,669 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,669 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,669 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,670 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,671 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,672 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,672 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,673 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,674 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,674 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,675 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T04:52:11,675 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T04:52:11,676 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T04:52:11,676 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T04:52:11,677 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T04:52:11,677 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T04:52:11,678 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T04:52:11,678 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T04:52:11,679 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T04:52:11,679 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T04:52:11,680 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,680 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,681 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,682 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,682 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,683 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,683 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,684 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,685 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,686 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,686 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T04:52:11,687 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T04:52:11,687 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T04:52:11,687 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T04:52:11,688 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T04:52:11,688 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T04:52:11,689 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T04:52:11,689 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T04:52:11,690 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T04:52:11,690 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,691 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,691 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,692 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,693 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,693 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,694 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,695 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,696 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,696 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,697 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T04:52:11,697 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T04:52:11,697 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T04:52:11,698 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T04:52:11,698 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T04:52:11,699 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T04:52:11,700 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T04:52:11,700 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T04:52:11,700 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T04:52:11,701 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,701 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,702 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,703 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,703 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,704 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,705 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,706 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,706 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,707 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T04:52:11,707 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T04:52:11,708 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T04:52:11,708 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T04:52:11,709 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T04:52:11,709 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T04:52:11,710 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T04:52:11,710 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T04:52:11,710 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T04:52:11,711 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,711 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,712 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,713 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,713 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,714 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,715 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,715 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,716 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,717 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,717 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T04:52:11,718 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T04:52:11,718 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T04:52:11,719 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T04:52:11,719 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T04:52:11,720 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T04:52:11,721 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T04:52:11,721 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T04:52:11,721 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T04:52:11,722 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,722 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,723 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,723 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,725 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,726 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,727 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,728 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,728 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,730 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,730 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,731 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T04:52:11,731 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T04:52:11,732 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T04:52:11,732 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T04:52:11,733 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T04:52:11,733 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T04:52:11,734 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T04:52:11,734 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T04:52:11,734 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T04:52:11,735 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,735 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,736 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,737 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,737 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,738 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,739 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,740 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,741 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,741 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T04:52:11,742 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T04:52:11,742 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T04:52:11,743 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T04:52:11,743 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T04:52:11,744 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T04:52:11,744 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T04:52:11,744 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T04:52:11,745 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T04:52:11,745 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T04:52:11,746 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,746 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,747 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,748 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,749 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,750 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,751 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,752 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,752 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,753 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T04:52:11,753 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T04:52:11,753 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T04:52:11,754 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T04:52:11,755 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T04:52:11,755 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T04:52:11,756 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T04:52:11,756 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T04:52:11,756 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T04:52:11,757 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,757 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,758 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,759 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,759 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,760 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,761 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,762 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,763 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,765 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T04:52:11,765 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,765 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,766 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,767 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,767 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,768 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,768 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,769 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,769 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,770 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,770 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,771 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,771 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,772 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,772 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,773 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,773 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T04:52:11,774 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,774 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,777 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,780 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,780 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,782 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,783 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,785 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T04:52:11,785 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,786 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,786 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,787 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,787 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,788 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,788 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,789 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,789 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,790 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,790 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,791 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,791 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,792 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,792 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,793 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,794 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,794 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,795 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,795 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,796 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,796 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,797 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,797 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,798 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,798 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,799 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,799 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,800 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,801 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,801 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,802 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,802 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,803 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,803 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,804 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,804 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,805 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,805 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,806 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,806 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,807 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,807 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,808 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T04:52:11,808 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,809 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,811 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,814 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,815 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,817 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,817 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,819 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,820 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T04:52:11,820 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,821 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,821 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,822 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,822 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,823 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,823 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,824 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,824 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,825 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,825 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,826 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,826 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,827 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,828 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,828 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,829 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,829 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,830 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,830 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,831 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,831 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,832 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,832 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,833 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,833 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,834 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,835 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,835 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,836 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,836 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,837 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,837 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,838 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,838 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,839 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,839 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,840 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T04:52:11,841 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,841 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,841 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,842 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,843 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,844 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,845 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,845 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,846 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,848 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,849 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T04:52:11,849 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,850 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,850 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,851 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,851 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,852 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,852 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,853 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T04:52:11,853 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,854 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,857 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,858 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,859 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,860 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,861 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,861 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,862 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,863 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,863 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T04:52:11,864 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T04:52:11,864 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T04:52:11,865 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T04:52:11,865 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T04:52:11,866 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T04:52:11,867 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T04:52:11,867 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T04:52:11,868 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T04:52:11,868 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,868 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,869 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,870 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,871 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,871 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,872 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,873 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,874 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,874 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T04:52:11,875 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T04:52:11,875 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T04:52:11,875 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T04:52:11,876 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T04:52:11,877 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T04:52:11,877 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T04:52:11,877 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T04:52:11,878 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T04:52:11,878 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,879 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,883 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,883 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,884 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,885 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,885 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,886 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,886 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,887 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,888 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T04:52:11,889 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T04:52:11,889 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T04:52:11,889 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T04:52:11,890 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T04:52:11,891 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T04:52:11,892 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T04:52:11,892 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T04:52:11,892 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T04:52:11,893 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T04:52:11,893 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T04:52:11,894 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T04:52:11,894 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T04:52:11,895 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T04:52:11,896 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T04:52:11,896 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T04:52:11,914 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T04:52:11,935 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T04:52:11,937 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T04:52:11,937 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T04:52:11,939 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T04:52:11,939 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,940 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,941 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,942 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,942 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,944 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,944 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,945 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,946 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,947 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,950 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,951 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,952 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,952 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,953 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,954 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,955 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,955 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,956 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,956 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T04:52:11,957 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T04:52:11,957 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T04:52:11,957 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T04:52:11,959 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T04:52:11,961 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,961 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,962 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,962 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,963 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,963 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,964 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,965 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,965 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,966 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,966 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,967 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,968 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,968 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T04:52:11,969 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T04:52:11,969 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T04:52:11,969 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T04:52:11,970 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T04:52:11,971 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T04:52:11,971 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T04:52:11,971 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T04:52:11,972 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T04:52:11,973 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T04:52:11,973 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T04:52:11,973 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T04:52:11,974 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T04:52:11,975 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T04:52:11,975 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T04:52:11,975 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T04:52:11,976 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T04:52:11,977 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,977 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,977 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,978 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,979 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,980 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,981 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,982 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,983 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,985 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,986 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,987 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,988 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,989 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T04:52:11,991 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T04:52:11,991 copying lightdock/test/bin/post/golden_data/create_membrane/membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T04:52:11,991 copying lightdock/test/bin/post/golden_data/create_membrane/receptor.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T04:52:11,993 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T04:52:11,993 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T04:52:11,994 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T04:52:11,994 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T04:52:11,994 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T04:52:11,995 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T04:52:11,997 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T04:52:11,998 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:11,999 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:11,999 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,000 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,000 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,002 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,004 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,005 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,007 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,009 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,011 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,012 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,014 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,016 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,018 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,019 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,021 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,023 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,024 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,026 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,028 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,029 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,031 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,033 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,034 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,036 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,038 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,039 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,041 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,043 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,044 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,046 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,048 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,049 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,051 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,053 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,054 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,056 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,058 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,059 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,061 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,063 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,065 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,066 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,068 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,070 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,071 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,073 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,075 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,076 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,078 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,080 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,081 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,083 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T04:52:12,085 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,085 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,085 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,086 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,087 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,088 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,090 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,092 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,093 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,095 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,097 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,098 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,100 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,102 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,104 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,105 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,107 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,109 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,111 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,112 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,114 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,116 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,118 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,119 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,121 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,123 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,124 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,126 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,128 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,129 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,131 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,133 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,134 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,136 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,138 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,140 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,141 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,143 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,144 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,146 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,148 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,149 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,151 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,153 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,154 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,156 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,158 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,159 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,161 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,163 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,165 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,166 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,168 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,170 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T04:52:12,171 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,172 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,172 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,173 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,173 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,175 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,177 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,178 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,180 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,182 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,184 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,185 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,187 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,189 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,190 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,192 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,194 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,195 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,197 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,199 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,200 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,202 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,204 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,205 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,207 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,209 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,210 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,212 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,214 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,215 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,217 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,219 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,220 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,222 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,224 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,225 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,227 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,229 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,231 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,232 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,234 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,236 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,237 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,239 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,240 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,242 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,244 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,246 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,247 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,249 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,251 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,252 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,254 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,256 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T04:52:12,257 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,258 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,258 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,259 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,259 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,261 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,263 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,264 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,266 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,268 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,270 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,271 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,273 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,275 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,276 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,278 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,280 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,281 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,283 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,285 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,286 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,288 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,290 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,291 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,293 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,295 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,296 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,298 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,300 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,301 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,303 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,305 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,306 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,308 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,310 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,311 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,313 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,315 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,316 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,318 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,320 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,321 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,323 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,325 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,326 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,328 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,330 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,332 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,333 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,335 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,337 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,338 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,340 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,342 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T04:52:12,343 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,343 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,344 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,345 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,346 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,347 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,348 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,349 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T04:52:12,350 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T04:52:12,350 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T04:52:12,351 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T04:52:12,351 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,351 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,353 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,354 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,355 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,356 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,357 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,360 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,361 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,361 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,363 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,365 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,366 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,368 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,370 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,371 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,373 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,375 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,376 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T04:52:12,378 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,378 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,380 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,381 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,382 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,385 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T04:52:12,385 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T04:52:12,386 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T04:52:12,386 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T04:52:12,387 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T04:52:12,389 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T04:52:12,390 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,391 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,391 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,392 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,393 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,393 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,394 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,395 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,396 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,396 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,397 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,398 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,398 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,399 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,400 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,400 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,401 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,402 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T04:52:12,402 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T04:52:12,403 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T04:52:12,403 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T04:52:12,404 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T04:52:12,404 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T04:52:12,405 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T04:52:12,405 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T04:52:12,406 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T04:52:12,406 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T04:52:12,407 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T04:52:12,407 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T04:52:12,407 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T04:52:12,408 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T04:52:12,408 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T04:52:12,409 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T04:52:12,409 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T04:52:12,432 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T04:52:12,433 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T04:52:12,457 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T04:52:12,472 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T04:52:12,473 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T04:52:12,496 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T04:52:12,496 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T04:52:12,497 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T04:52:12,498 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T04:52:12,499 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T04:52:12,500 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T04:52:12,500 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T04:52:12,501 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T04:52:12,502 copying lightdock/scoring/ddna/cython/cddna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T04:52:12,503 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T04:52:12,504 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:12,505 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:12,507 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:12,508 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:12,509 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:12,510 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:12,511 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T04:52:12,526 running build_ext 2025-09-09T04:52:12,883 building 'lightdock.mathutil.cython.cutil' extension 2025-09-09T04:52:12,884 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T04:52:12,884 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-09T04:52:13,233 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-09T04:52:13,234 196 | #include "longintrepr.h" 2025-09-09T04:52:13,234 | ^~~~~~~~~~~~~~~ 2025-09-09T04:52:13,234 compilation terminated. 2025-09-09T04:52:13,237 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-09T04:52:13,414 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T04:52:13,426 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T04:52:13,426 exec(compile('"'"''"'"''"'"' 2025-09-09T04:52:13,426 # This is -- a caller that pip uses to run setup.py 2025-09-09T04:52:13,426 # 2025-09-09T04:52:13,426 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T04:52:13,426 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T04:52:13,426 # - It provides a clear error message when setuptools is not installed. 2025-09-09T04:52:13,426 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T04:52:13,426 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T04:52:13,426 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T04:52:13,426 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T04:52:13,426 import os, sys, tokenize, traceback 2025-09-09T04:52:13,426 2025-09-09T04:52:13,426 try: 2025-09-09T04:52:13,426 import setuptools 2025-09-09T04:52:13,426 except ImportError: 2025-09-09T04:52:13,426 print( 2025-09-09T04:52:13,426 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T04:52:13,426 "the build environment with exception:", 2025-09-09T04:52:13,426 file=sys.stderr, 2025-09-09T04:52:13,426 ) 2025-09-09T04:52:13,426 traceback.print_exc() 2025-09-09T04:52:13,426 sys.exit(1) 2025-09-09T04:52:13,426 2025-09-09T04:52:13,426 __file__ = %r 2025-09-09T04:52:13,426 sys.argv[0] = __file__ 2025-09-09T04:52:13,426 2025-09-09T04:52:13,426 if os.path.exists(__file__): 2025-09-09T04:52:13,426 filename = __file__ 2025-09-09T04:52:13,426 with tokenize.open(__file__) as f: 2025-09-09T04:52:13,426 setup_py_code = f.read() 2025-09-09T04:52:13,426 else: 2025-09-09T04:52:13,426 filename = "" 2025-09-09T04:52:13,426 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T04:52:13,426 2025-09-09T04:52:13,426 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T04:52:13,426 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-2u_8stnh[/] 2025-09-09T04:52:13,426 [bold magenta]cwd[/]: /tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/ 2025-09-09T04:52:13,426 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-09T04:52:13,427 ERROR: Failed building wheel for lightdock 2025-09-09T04:52:13,427 Running setup.py clean for lightdock 2025-09-09T04:52:13,428 Running command python setup.py clean 2025-09-09T04:52:13,946 /tmp/pip-wheel-7uzmswc6/lightdock_9989a835d51d41488ba6d39c9df942c0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T04:52:13,946 !! 2025-09-09T04:52:13,946 ******************************************************************************** 2025-09-09T04:52:13,946 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T04:52:13,946 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T04:52:13,946 calls to avoid build errors in the future. 2025-09-09T04:52:13,947 ******************************************************************************** 2025-09-09T04:52:13,947 !! 2025-09-09T04:52:13,947 from setuptools.command.test import test as TestCommand 2025-09-09T04:52:14,292 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T04:52:14,293 !! 2025-09-09T04:52:14,293 ******************************************************************************** 2025-09-09T04:52:14,293 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T04:52:14,293 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T04:52:14,293 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T04:52:14,293 or your builds will no longer be supported. 2025-09-09T04:52:14,293 ******************************************************************************** 2025-09-09T04:52:14,294 !! 2025-09-09T04:52:14,294 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T04:52:15,135 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T04:52:15,135 !! 2025-09-09T04:52:15,135 ******************************************************************************** 2025-09-09T04:52:15,135 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T04:52:15,136 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T04:52:15,136 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T04:52:15,136 ******************************************************************************** 2025-09-09T04:52:15,136 !! 2025-09-09T04:52:15,136 self._finalize_license_expression() 2025-09-09T04:52:15,211 running clean 2025-09-09T04:52:15,358 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T04:52:15,359 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T04:52:15,445 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T04:52:15,445 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T04:52:15,446 removing 'build' 2025-09-09T04:52:15,585 Failed to build lightdock 2025-09-09T04:52:15,586 ERROR: Failed to build one or more wheels 2025-09-09T04:52:15,587 Exception information: 2025-09-09T04:52:15,587 Traceback (most recent call last): 2025-09-09T04:52:15,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T04:52:15,587 status = _inner_run() 2025-09-09T04:52:15,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T04:52:15,587 return self.run(options, args) 2025-09-09T04:52:15,587 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T04:52:15,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T04:52:15,587 return func(self, options, args) 2025-09-09T04:52:15,587 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T04:52:15,587 raise CommandError("Failed to build one or more wheels") 2025-09-09T04:52:15,587 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T04:52:15,591 Removed build tracker: '/tmp/pip-build-tracker-byg8tima'