2025-09-09T05:09:55,332 Created temporary directory: /tmp/pip-build-tracker-v0pzf1_1 2025-09-09T05:09:55,332 Initialized build tracking at /tmp/pip-build-tracker-v0pzf1_1 2025-09-09T05:09:55,332 Created build tracker: /tmp/pip-build-tracker-v0pzf1_1 2025-09-09T05:09:55,333 Entered build tracker: /tmp/pip-build-tracker-v0pzf1_1 2025-09-09T05:09:55,333 Created temporary directory: /tmp/pip-wheel-8cle7bhc 2025-09-09T05:09:55,336 Created temporary directory: /tmp/pip-ephem-wheel-cache-za4wc99o 2025-09-09T05:09:55,394 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T05:09:55,397 2 location(s) to search for versions of lightdock: 2025-09-09T05:09:55,397 * https://pypi.org/simple/lightdock/ 2025-09-09T05:09:55,397 * https://www.piwheels.org/simple/lightdock/ 2025-09-09T05:09:55,397 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2025-09-09T05:09:55,397 Getting page https://pypi.org/simple/lightdock/ 2025-09-09T05:09:55,398 Found index url https://pypi.org/simple/ 2025-09-09T05:09:55,468 Fetched page https://pypi.org/simple/lightdock/ as application/vnd.pypi.simple.v1+json 2025-09-09T05:09:55,473 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,474 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2025-09-09T05:09:55,474 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,474 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2025-09-09T05:09:55,474 Skipping link: No binaries permitted for lightdock: https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,475 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2025-09-09T05:09:55,475 Skipping link: No binaries permitted for lightdock: 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https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv6l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a2-cp39-cp39-linux_armv7l.whl#sha256=0848d95000656d259c0e40979158dda5c842489a3811832054c9fed2d8a9b1ab (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv6l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp39-cp39-linux_armv7l.whl#sha256=ca0b6d2145cc139e089cd97e88e9596a2086656e0b80a6d6b84925e16ba7fda0 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv7l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.8.0a1-cp37-cp37m-linux_armv6l.whl#sha256=99301ff531f5af674ee3ecd2e474e97e5e2e0804c77e4710a25fe72b979eb9c7 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,603 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv6l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,604 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl#sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,604 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv6l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,604 Skipping link: No binaries permitted for lightdock: https://archive1.piwheels.org/simple/lightdock/lightdock-0.7.1a1-cp37-cp37m-linux_armv7l.whl#sha256=ac6dd932deae6950ef2cb5f798b1896bd700266bb92dabe71f5b8abf5cec4835 (from https://www.piwheels.org/simple/lightdock/) (requires-python:>=3.5) 2025-09-09T05:09:55,604 Skipping link: not a file: https://www.piwheels.org/simple/lightdock/ 2025-09-09T05:09:55,604 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2025-09-09T05:09:55,628 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2025-09-09T05:09:55,629 Collecting lightdock==0.8.1 2025-09-09T05:09:55,630 Created temporary directory: /tmp/pip-unpack-ty9w03a9 2025-09-09T05:09:55,914 Downloading lightdock-0.8.1.tar.gz (33.0 MB) 2025-09-09T05:10:05,343 Added lightdock==0.8.1 from https://files.pythonhosted.org/packages/53/88/c024fc5e362b599eb44f0b227b8ea725523fa28091a4dc8298e0adee136a/lightdock-0.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-v0pzf1_1' 2025-09-09T05:10:05,344 Running setup.py (path:/tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/setup.py) egg_info for package lightdock 2025-09-09T05:10:05,345 Created temporary directory: /tmp/pip-pip-egg-info-mnpjrvm5 2025-09-09T05:10:05,345 Preparing metadata (setup.py): started 2025-09-09T05:10:05,346 Running command python setup.py egg_info 2025-09-09T05:10:05,861 /tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T05:10:05,861 !! 2025-09-09T05:10:05,861 ******************************************************************************** 2025-09-09T05:10:05,861 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T05:10:05,861 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T05:10:05,862 calls to avoid build errors in the future. 2025-09-09T05:10:05,862 ******************************************************************************** 2025-09-09T05:10:05,862 !! 2025-09-09T05:10:05,862 from setuptools.command.test import test as TestCommand 2025-09-09T05:10:06,238 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T05:10:06,238 !! 2025-09-09T05:10:06,238 ******************************************************************************** 2025-09-09T05:10:06,238 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T05:10:06,238 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T05:10:06,239 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T05:10:06,239 or your builds will no longer be supported. 2025-09-09T05:10:06,239 ******************************************************************************** 2025-09-09T05:10:06,239 !! 2025-09-09T05:10:06,239 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T05:10:09,361 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T05:10:09,361 !! 2025-09-09T05:10:09,361 ******************************************************************************** 2025-09-09T05:10:09,361 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T05:10:09,361 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T05:10:09,361 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T05:10:09,362 ******************************************************************************** 2025-09-09T05:10:09,362 !! 2025-09-09T05:10:09,362 self._finalize_license_expression() 2025-09-09T05:10:09,437 running egg_info 2025-09-09T05:10:09,513 creating /tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info 2025-09-09T05:10:09,513 writing /tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/PKG-INFO 2025-09-09T05:10:09,515 writing dependency_links to /tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/dependency_links.txt 2025-09-09T05:10:09,515 writing requirements to /tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/requires.txt 2025-09-09T05:10:09,516 writing top-level names to /tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/top_level.txt 2025-09-09T05:10:09,516 writing manifest file '/tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/SOURCES.txt' 2025-09-09T05:10:09,926 reading manifest file '/tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/SOURCES.txt' 2025-09-09T05:10:09,927 reading manifest template 'MANIFEST.in' 2025-09-09T05:10:10,000 warning: no files found matching '*' under directory 'lightdock/test/rotamer/golden_data' 2025-09-09T05:10:10,003 adding license file 'LICENSE' 2025-09-09T05:10:10,042 writing manifest file '/tmp/pip-pip-egg-info-mnpjrvm5/lightdock.egg-info/SOURCES.txt' 2025-09-09T05:10:10,180 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T05:10:10,185 Source in /tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0 has version 0.8.1, which satisfies requirement lightdock==0.8.1 from https://files.pythonhosted.org/packages/53/88/c024fc5e362b599eb44f0b227b8ea725523fa28091a4dc8298e0adee136a/lightdock-0.8.1.tar.gz 2025-09-09T05:10:10,185 Removed lightdock==0.8.1 from https://files.pythonhosted.org/packages/53/88/c024fc5e362b599eb44f0b227b8ea725523fa28091a4dc8298e0adee136a/lightdock-0.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-v0pzf1_1' 2025-09-09T05:10:10,192 Created temporary directory: /tmp/pip-unpack-fa_4el5x 2025-09-09T05:10:10,193 Created temporary directory: /tmp/pip-unpack-hp7kbuvn 2025-09-09T05:10:10,193 Building wheels for collected packages: lightdock 2025-09-09T05:10:10,194 Created temporary directory: /tmp/pip-wheel-ynmwilwt 2025-09-09T05:10:10,195 DEPRECATION: Building 'lightdock' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lightdock'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T05:10:10,196 Building wheel for lightdock (setup.py): started 2025-09-09T05:10:10,197 Destination directory: /tmp/pip-wheel-ynmwilwt 2025-09-09T05:10:10,197 Running command python setup.py bdist_wheel 2025-09-09T05:10:10,718 /tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T05:10:10,718 !! 2025-09-09T05:10:10,718 ******************************************************************************** 2025-09-09T05:10:10,718 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T05:10:10,719 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T05:10:10,719 calls to avoid build errors in the future. 2025-09-09T05:10:10,719 ******************************************************************************** 2025-09-09T05:10:10,719 !! 2025-09-09T05:10:10,719 from setuptools.command.test import test as TestCommand 2025-09-09T05:10:11,064 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T05:10:11,064 !! 2025-09-09T05:10:11,064 ******************************************************************************** 2025-09-09T05:10:11,064 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T05:10:11,064 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T05:10:11,064 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T05:10:11,064 or your builds will no longer be supported. 2025-09-09T05:10:11,065 ******************************************************************************** 2025-09-09T05:10:11,065 !! 2025-09-09T05:10:11,065 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T05:10:11,911 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T05:10:11,911 !! 2025-09-09T05:10:11,912 ******************************************************************************** 2025-09-09T05:10:11,912 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T05:10:11,912 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T05:10:11,912 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T05:10:11,912 ******************************************************************************** 2025-09-09T05:10:11,912 !! 2025-09-09T05:10:11,912 self._finalize_license_expression() 2025-09-09T05:10:11,913 running bdist_wheel 2025-09-09T05:10:12,291 running build 2025-09-09T05:10:12,291 running build_py 2025-09-09T05:10:12,370 creating build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T05:10:12,370 copying lightdock/version.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T05:10:12,371 copying lightdock/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T05:10:12,371 copying lightdock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock 2025-09-09T05:10:12,372 creating build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,372 copying lightdock/util/table.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,373 copying lightdock/util/parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,373 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,374 copying lightdock/util/logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,375 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,375 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/util 2025-09-09T05:10:12,376 creating build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T05:10:12,376 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test 2025-09-09T05:10:12,377 creating build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,377 copying lightdock/structure/space.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,378 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,378 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,379 copying lightdock/structure/model.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,379 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,380 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,380 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,381 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/structure 2025-09-09T05:10:12,381 creating build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T05:10:12,382 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T05:10:12,382 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T05:10:12,383 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/simulation 2025-09-09T05:10:12,384 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T05:10:12,384 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T05:10:12,384 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T05:10:12,385 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring 2025-09-09T05:10:12,386 creating build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,386 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,386 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,387 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,387 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,388 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,388 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/prep 2025-09-09T05:10:12,389 creating build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T05:10:12,389 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T05:10:12,390 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/pdbutil 2025-09-09T05:10:12,391 creating build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T05:10:12,391 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T05:10:12,392 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T05:10:12,392 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/parallel 2025-09-09T05:10:12,393 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T05:10:12,393 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T05:10:12,394 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T05:10:12,394 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T05:10:12,395 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil 2025-09-09T05:10:12,395 creating build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,396 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,396 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,397 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,397 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,398 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,398 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,399 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,399 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso 2025-09-09T05:10:12,400 creating build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T05:10:12,400 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T05:10:12,401 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/error 2025-09-09T05:10:12,401 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T05:10:12,402 copying lightdock/test/util/test_parser.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T05:10:12,402 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T05:10:12,403 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/util 2025-09-09T05:10:12,403 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,404 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,404 copying lightdock/test/structure/test_nm.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,405 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,405 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,406 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,406 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,407 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure 2025-09-09T05:10:12,408 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,408 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,408 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,409 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,410 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,410 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,411 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,411 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,412 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,412 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,413 copying lightdock/test/scoring/test_ddna_function.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,413 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring 2025-09-09T05:10:12,414 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,414 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,415 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,415 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,416 copying lightdock/test/prep/test_geometry.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,417 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,417 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep 2025-09-09T05:10:12,418 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T05:10:12,418 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T05:10:12,419 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil 2025-09-09T05:10:12,419 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,420 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,420 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,421 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,421 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,422 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,422 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,423 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil 2025-09-09T05:10:12,424 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,424 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,424 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,425 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,425 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,426 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,426 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,427 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,427 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,428 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,428 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso 2025-09-09T05:10:12,429 creating build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T05:10:12,429 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T05:10:12,430 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/error 2025-09-09T05:10:12,431 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,431 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,432 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,432 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,433 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,433 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,434 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,434 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,435 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,435 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,436 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,436 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,437 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,437 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin 2025-09-09T05:10:12,438 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,438 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,439 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,440 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,440 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,441 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,441 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,442 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,442 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,443 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace 2025-09-09T05:10:12,444 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,444 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,444 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,445 copying lightdock/test/bin/post/test_lgd_create_membrane.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,445 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,446 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,446 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,447 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,447 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,448 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,448 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,449 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,449 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post 2025-09-09T05:10:12,450 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T05:10:12,450 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T05:10:12,451 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw 2025-09-09T05:10:12,452 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T05:10:12,452 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T05:10:12,452 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi 2025-09-09T05:10:12,453 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T05:10:12,453 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T05:10:12,454 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/template 2025-09-09T05:10:12,454 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T05:10:12,455 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T05:10:12,455 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper 2025-09-09T05:10:12,456 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T05:10:12,456 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T05:10:12,457 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd 2025-09-09T05:10:12,457 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T05:10:12,458 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T05:10:12,458 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa 2025-09-09T05:10:12,459 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T05:10:12,459 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T05:10:12,460 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h 2025-09-09T05:10:12,460 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T05:10:12,461 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T05:10:12,461 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire 2025-09-09T05:10:12,462 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T05:10:12,462 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T05:10:12,463 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna 2025-09-09T05:10:12,463 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T05:10:12,464 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T05:10:12,464 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2 2025-09-09T05:10:12,465 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T05:10:12,465 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T05:10:12,466 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire 2025-09-09T05:10:12,466 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T05:10:12,467 copying lightdock/scoring/ddna/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T05:10:12,467 copying lightdock/scoring/ddna/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna 2025-09-09T05:10:12,468 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T05:10:12,468 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T05:10:12,469 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock 2025-09-09T05:10:12,469 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T05:10:12,470 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy 2025-09-09T05:10:12,471 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T05:10:12,471 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T05:10:12,471 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T05:10:12,472 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/data 2025-09-09T05:10:12,473 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T05:10:12,473 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T05:10:12,474 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T05:10:12,475 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T05:10:12,475 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T05:10:12,475 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/data 2025-09-09T05:10:12,476 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T05:10:12,476 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T05:10:12,477 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T05:10:12,477 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T05:10:12,478 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy 2025-09-09T05:10:12,478 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T05:10:12,479 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T05:10:12,479 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T05:10:12,480 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/data 2025-09-09T05:10:12,481 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T05:10:12,481 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T05:10:12,482 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T05:10:12,483 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T05:10:12,483 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T05:10:12,483 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T05:10:12,484 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T05:10:12,484 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T05:10:12,485 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T05:10:12,485 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T05:10:12,486 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T05:10:12,486 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy 2025-09-09T05:10:12,487 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T05:10:12,487 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T05:10:12,488 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T05:10:12,489 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/data 2025-09-09T05:10:12,490 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T05:10:12,490 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T05:10:12,491 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T05:10:12,491 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T05:10:12,492 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T05:10:12,492 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/cython 2025-09-09T05:10:12,493 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T05:10:12,493 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T05:10:12,494 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T05:10:12,494 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T05:10:12,495 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T05:10:12,495 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T05:10:12,496 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T05:10:12,496 copying lightdock/scoring/ddna/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T05:10:12,497 copying lightdock/scoring/ddna/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T05:10:12,497 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T05:10:12,498 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T05:10:12,498 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy 2025-09-09T05:10:12,499 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T05:10:12,499 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T05:10:12,500 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T05:10:12,500 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T05:10:12,501 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/data 2025-09-09T05:10:12,502 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T05:10:12,502 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T05:10:12,503 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T05:10:12,503 creating build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:12,504 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:12,504 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:12,505 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T05:10:12,505 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T05:10:12,506 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T05:10:12,506 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T05:10:12,507 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace 2025-09-09T05:10:12,507 creating build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:12,508 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:12,508 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:12,509 running egg_info 2025-09-09T05:10:12,582 writing lightdock.egg-info/PKG-INFO 2025-09-09T05:10:12,584 writing dependency_links to lightdock.egg-info/dependency_links.txt 2025-09-09T05:10:12,584 writing requirements to lightdock.egg-info/requires.txt 2025-09-09T05:10:12,585 writing top-level names to lightdock.egg-info/top_level.txt 2025-09-09T05:10:12,688 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T05:10:12,757 reading manifest template 'MANIFEST.in' 2025-09-09T05:10:12,831 warning: no files found matching '*' under directory 'lightdock/test/rotamer/golden_data' 2025-09-09T05:10:12,834 adding license file 'LICENSE' 2025-09-09T05:10:12,891 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2025-09-09T05:10:12,893 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.etc' is absent from the `packages` configuration. 2025-09-09T05:10:12,893 !! 2025-09-09T05:10:12,893 ******************************************************************************** 2025-09-09T05:10:12,893 ############################ 2025-09-09T05:10:12,893 # Package would be ignored # 2025-09-09T05:10:12,893 ############################ 2025-09-09T05:10:12,894 Python recognizes 'lightdock.etc' as an importable package[^1], 2025-09-09T05:10:12,894 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,894 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,894 package, please make sure that 'lightdock.etc' is explicitly added 2025-09-09T05:10:12,894 to the `packages` configuration field. 2025-09-09T05:10:12,894 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,894 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,895 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,895 If you don't want 'lightdock.etc' to be distributed and are 2025-09-09T05:10:12,895 already explicitly excluding 'lightdock.etc' via 2025-09-09T05:10:12,895 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,895 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,895 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,895 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,896 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,896 even if it does not contain any `.py` files. 2025-09-09T05:10:12,896 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,896 directory, all directories are treated like packages. 2025-09-09T05:10:12,896 ******************************************************************************** 2025-09-09T05:10:12,896 !! 2025-09-09T05:10:12,896 check.warn(importable) 2025-09-09T05:10:12,897 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,897 !! 2025-09-09T05:10:12,897 ******************************************************************************** 2025-09-09T05:10:12,897 ############################ 2025-09-09T05:10:12,897 # Package would be ignored # 2025-09-09T05:10:12,897 ############################ 2025-09-09T05:10:12,897 Python recognizes 'lightdock.scoring.dfire.data' as an importable package[^1], 2025-09-09T05:10:12,897 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,897 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,898 package, please make sure that 'lightdock.scoring.dfire.data' is explicitly added 2025-09-09T05:10:12,898 to the `packages` configuration field. 2025-09-09T05:10:12,898 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,898 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,898 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,898 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,898 If you don't want 'lightdock.scoring.dfire.data' to be distributed and are 2025-09-09T05:10:12,899 already explicitly excluding 'lightdock.scoring.dfire.data' via 2025-09-09T05:10:12,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,899 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,899 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,899 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,899 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,899 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,900 even if it does not contain any `.py` files. 2025-09-09T05:10:12,900 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,900 directory, all directories are treated like packages. 2025-09-09T05:10:12,900 ******************************************************************************** 2025-09-09T05:10:12,900 !! 2025-09-09T05:10:12,900 check.warn(importable) 2025-09-09T05:10:12,900 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.dfire2.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,900 !! 2025-09-09T05:10:12,900 ******************************************************************************** 2025-09-09T05:10:12,901 ############################ 2025-09-09T05:10:12,901 # Package would be ignored # 2025-09-09T05:10:12,901 ############################ 2025-09-09T05:10:12,901 Python recognizes 'lightdock.scoring.dfire2.data' as an importable package[^1], 2025-09-09T05:10:12,901 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,901 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,901 package, please make sure that 'lightdock.scoring.dfire2.data' is explicitly added 2025-09-09T05:10:12,901 to the `packages` configuration field. 2025-09-09T05:10:12,901 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,902 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,902 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,902 If you don't want 'lightdock.scoring.dfire2.data' to be distributed and are 2025-09-09T05:10:12,902 already explicitly excluding 'lightdock.scoring.dfire2.data' via 2025-09-09T05:10:12,902 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,902 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,902 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,903 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,903 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,903 even if it does not contain any `.py` files. 2025-09-09T05:10:12,903 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,903 directory, all directories are treated like packages. 2025-09-09T05:10:12,903 ******************************************************************************** 2025-09-09T05:10:12,903 !! 2025-09-09T05:10:12,904 check.warn(importable) 2025-09-09T05:10:12,904 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.fastdfire.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,904 !! 2025-09-09T05:10:12,904 ******************************************************************************** 2025-09-09T05:10:12,904 ############################ 2025-09-09T05:10:12,904 # Package would be ignored # 2025-09-09T05:10:12,904 ############################ 2025-09-09T05:10:12,904 Python recognizes 'lightdock.scoring.fastdfire.data' as an importable package[^1], 2025-09-09T05:10:12,904 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,904 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,905 package, please make sure that 'lightdock.scoring.fastdfire.data' is explicitly added 2025-09-09T05:10:12,905 to the `packages` configuration field. 2025-09-09T05:10:12,905 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,905 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,905 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,905 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,905 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,905 If you don't want 'lightdock.scoring.fastdfire.data' to be distributed and are 2025-09-09T05:10:12,906 already explicitly excluding 'lightdock.scoring.fastdfire.data' via 2025-09-09T05:10:12,906 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,906 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,906 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,906 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,906 even if it does not contain any `.py` files. 2025-09-09T05:10:12,907 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,907 directory, all directories are treated like packages. 2025-09-09T05:10:12,907 ******************************************************************************** 2025-09-09T05:10:12,907 !! 2025-09-09T05:10:12,907 check.warn(importable) 2025-09-09T05:10:12,907 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.mj3h.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,907 !! 2025-09-09T05:10:12,907 ******************************************************************************** 2025-09-09T05:10:12,907 ############################ 2025-09-09T05:10:12,907 # Package would be ignored # 2025-09-09T05:10:12,908 ############################ 2025-09-09T05:10:12,908 Python recognizes 'lightdock.scoring.mj3h.data' as an importable package[^1], 2025-09-09T05:10:12,908 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,908 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,908 package, please make sure that 'lightdock.scoring.mj3h.data' is explicitly added 2025-09-09T05:10:12,908 to the `packages` configuration field. 2025-09-09T05:10:12,908 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,908 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,908 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,909 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,909 If you don't want 'lightdock.scoring.mj3h.data' to be distributed and are 2025-09-09T05:10:12,909 already explicitly excluding 'lightdock.scoring.mj3h.data' via 2025-09-09T05:10:12,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,909 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,909 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,910 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,910 even if it does not contain any `.py` files. 2025-09-09T05:10:12,910 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,910 directory, all directories are treated like packages. 2025-09-09T05:10:12,910 ******************************************************************************** 2025-09-09T05:10:12,910 !! 2025-09-09T05:10:12,911 check.warn(importable) 2025-09-09T05:10:12,911 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.pisa.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,911 !! 2025-09-09T05:10:12,911 ******************************************************************************** 2025-09-09T05:10:12,911 ############################ 2025-09-09T05:10:12,911 # Package would be ignored # 2025-09-09T05:10:12,911 ############################ 2025-09-09T05:10:12,911 Python recognizes 'lightdock.scoring.pisa.data' as an importable package[^1], 2025-09-09T05:10:12,911 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,912 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,912 package, please make sure that 'lightdock.scoring.pisa.data' is explicitly added 2025-09-09T05:10:12,912 to the `packages` configuration field. 2025-09-09T05:10:12,912 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,912 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,912 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,912 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,912 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,913 If you don't want 'lightdock.scoring.pisa.data' to be distributed and are 2025-09-09T05:10:12,913 already explicitly excluding 'lightdock.scoring.pisa.data' via 2025-09-09T05:10:12,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,913 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,913 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,914 even if it does not contain any `.py` files. 2025-09-09T05:10:12,914 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,914 directory, all directories are treated like packages. 2025-09-09T05:10:12,914 ******************************************************************************** 2025-09-09T05:10:12,914 !! 2025-09-09T05:10:12,914 check.warn(importable) 2025-09-09T05:10:12,914 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.scoring.tobi.data' is absent from the `packages` configuration. 2025-09-09T05:10:12,914 !! 2025-09-09T05:10:12,915 ******************************************************************************** 2025-09-09T05:10:12,915 ############################ 2025-09-09T05:10:12,915 # Package would be ignored # 2025-09-09T05:10:12,915 ############################ 2025-09-09T05:10:12,915 Python recognizes 'lightdock.scoring.tobi.data' as an importable package[^1], 2025-09-09T05:10:12,915 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,915 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,915 package, please make sure that 'lightdock.scoring.tobi.data' is explicitly added 2025-09-09T05:10:12,915 to the `packages` configuration field. 2025-09-09T05:10:12,916 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,916 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,916 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,916 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,916 If you don't want 'lightdock.scoring.tobi.data' to be distributed and are 2025-09-09T05:10:12,916 already explicitly excluding 'lightdock.scoring.tobi.data' via 2025-09-09T05:10:12,916 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,917 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,917 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,917 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,917 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,917 even if it does not contain any `.py` files. 2025-09-09T05:10:12,917 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,918 directory, all directories are treated like packages. 2025-09-09T05:10:12,918 ******************************************************************************** 2025-09-09T05:10:12,918 !! 2025-09-09T05:10:12,918 check.warn(importable) 2025-09-09T05:10:12,918 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long' is absent from the `packages` configuration. 2025-09-09T05:10:12,918 !! 2025-09-09T05:10:12,918 ******************************************************************************** 2025-09-09T05:10:12,918 ############################ 2025-09-09T05:10:12,918 # Package would be ignored # 2025-09-09T05:10:12,918 ############################ 2025-09-09T05:10:12,919 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long' as an importable package[^1], 2025-09-09T05:10:12,919 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,919 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,919 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long' is explicitly added 2025-09-09T05:10:12,919 to the `packages` configuration field. 2025-09-09T05:10:12,919 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,919 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,919 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,920 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,920 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,920 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long' to be distributed and are 2025-09-09T05:10:12,920 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long' via 2025-09-09T05:10:12,920 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,920 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,920 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,920 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,921 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,921 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,921 even if it does not contain any `.py` files. 2025-09-09T05:10:12,921 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,921 directory, all directories are treated like packages. 2025-09-09T05:10:12,921 ******************************************************************************** 2025-09-09T05:10:12,921 !! 2025-09-09T05:10:12,922 check.warn(importable) 2025-09-09T05:10:12,922 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:12,922 !! 2025-09-09T05:10:12,922 ******************************************************************************** 2025-09-09T05:10:12,922 ############################ 2025-09-09T05:10:12,922 # Package would be ignored # 2025-09-09T05:10:12,922 ############################ 2025-09-09T05:10:12,922 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.init' as an importable package[^1], 2025-09-09T05:10:12,922 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,922 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,923 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.init' is explicitly added 2025-09-09T05:10:12,923 to the `packages` configuration field. 2025-09-09T05:10:12,923 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,923 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,923 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,923 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,924 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.init' to be distributed and are 2025-09-09T05:10:12,924 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.init' via 2025-09-09T05:10:12,924 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,924 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,924 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,924 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,925 even if it does not contain any `.py` files. 2025-09-09T05:10:12,925 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,925 directory, all directories are treated like packages. 2025-09-09T05:10:12,925 ******************************************************************************** 2025-09-09T05:10:12,925 !! 2025-09-09T05:10:12,925 check.warn(importable) 2025-09-09T05:10:12,925 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:12,925 !! 2025-09-09T05:10:12,926 ******************************************************************************** 2025-09-09T05:10:12,926 ############################ 2025-09-09T05:10:12,926 # Package would be ignored # 2025-09-09T05:10:12,926 ############################ 2025-09-09T05:10:12,926 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:12,926 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,926 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,926 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' is explicitly added 2025-09-09T05:10:12,926 to the `packages` configuration field. 2025-09-09T05:10:12,927 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,927 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,927 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,927 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' to be distributed and are 2025-09-09T05:10:12,927 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_0' via 2025-09-09T05:10:12,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,928 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,928 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,928 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,928 even if it does not contain any `.py` files. 2025-09-09T05:10:12,928 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,929 directory, all directories are treated like packages. 2025-09-09T05:10:12,929 ******************************************************************************** 2025-09-09T05:10:12,929 !! 2025-09-09T05:10:12,929 check.warn(importable) 2025-09-09T05:10:12,929 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T05:10:12,929 !! 2025-09-09T05:10:12,929 ******************************************************************************** 2025-09-09T05:10:12,929 ############################ 2025-09-09T05:10:12,929 # Package would be ignored # 2025-09-09T05:10:12,930 ############################ 2025-09-09T05:10:12,930 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' as an importable package[^1], 2025-09-09T05:10:12,930 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,930 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,930 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' is explicitly added 2025-09-09T05:10:12,930 to the `packages` configuration field. 2025-09-09T05:10:12,930 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,930 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,931 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,931 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,931 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' to be distributed and are 2025-09-09T05:10:12,931 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_1' via 2025-09-09T05:10:12,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,931 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,931 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,931 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,932 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,932 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,932 even if it does not contain any `.py` files. 2025-09-09T05:10:12,932 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,932 directory, all directories are treated like packages. 2025-09-09T05:10:12,932 ******************************************************************************** 2025-09-09T05:10:12,932 !! 2025-09-09T05:10:12,932 check.warn(importable) 2025-09-09T05:10:12,932 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T05:10:12,933 !! 2025-09-09T05:10:12,933 ******************************************************************************** 2025-09-09T05:10:12,933 ############################ 2025-09-09T05:10:12,933 # Package would be ignored # 2025-09-09T05:10:12,933 ############################ 2025-09-09T05:10:12,933 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' as an importable package[^1], 2025-09-09T05:10:12,933 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,933 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,933 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' is explicitly added 2025-09-09T05:10:12,933 to the `packages` configuration field. 2025-09-09T05:10:12,934 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,934 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,934 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,934 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,934 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' to be distributed and are 2025-09-09T05:10:12,934 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_2' via 2025-09-09T05:10:12,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,935 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,935 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,935 even if it does not contain any `.py` files. 2025-09-09T05:10:12,935 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,935 directory, all directories are treated like packages. 2025-09-09T05:10:12,935 ******************************************************************************** 2025-09-09T05:10:12,936 !! 2025-09-09T05:10:12,936 check.warn(importable) 2025-09-09T05:10:12,936 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T05:10:12,936 !! 2025-09-09T05:10:12,936 ******************************************************************************** 2025-09-09T05:10:12,936 ############################ 2025-09-09T05:10:12,936 # Package would be ignored # 2025-09-09T05:10:12,936 ############################ 2025-09-09T05:10:12,936 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' as an importable package[^1], 2025-09-09T05:10:12,936 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,937 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,937 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' is explicitly added 2025-09-09T05:10:12,937 to the `packages` configuration field. 2025-09-09T05:10:12,937 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,937 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,937 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,938 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' to be distributed and are 2025-09-09T05:10:12,938 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_3' via 2025-09-09T05:10:12,938 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,938 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,938 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,938 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,939 even if it does not contain any `.py` files. 2025-09-09T05:10:12,939 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,939 directory, all directories are treated like packages. 2025-09-09T05:10:12,939 ******************************************************************************** 2025-09-09T05:10:12,939 !! 2025-09-09T05:10:12,939 check.warn(importable) 2025-09-09T05:10:12,939 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T05:10:12,939 !! 2025-09-09T05:10:12,940 ******************************************************************************** 2025-09-09T05:10:12,940 ############################ 2025-09-09T05:10:12,940 # Package would be ignored # 2025-09-09T05:10:12,940 ############################ 2025-09-09T05:10:12,940 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' as an importable package[^1], 2025-09-09T05:10:12,940 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,940 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,940 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' is explicitly added 2025-09-09T05:10:12,940 to the `packages` configuration field. 2025-09-09T05:10:12,940 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,941 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,941 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,941 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,941 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' to be distributed and are 2025-09-09T05:10:12,941 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_long.swarm_4' via 2025-09-09T05:10:12,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,941 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,942 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,942 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,942 even if it does not contain any `.py` files. 2025-09-09T05:10:12,942 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,942 directory, all directories are treated like packages. 2025-09-09T05:10:12,942 ******************************************************************************** 2025-09-09T05:10:12,942 !! 2025-09-09T05:10:12,943 check.warn(importable) 2025-09-09T05:10:12,943 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:12,943 !! 2025-09-09T05:10:12,943 ******************************************************************************** 2025-09-09T05:10:12,943 ############################ 2025-09-09T05:10:12,943 # Package would be ignored # 2025-09-09T05:10:12,943 ############################ 2025-09-09T05:10:12,943 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints' as an importable package[^1], 2025-09-09T05:10:12,943 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,943 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,944 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints' is explicitly added 2025-09-09T05:10:12,944 to the `packages` configuration field. 2025-09-09T05:10:12,944 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,944 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,944 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,944 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints' to be distributed and are 2025-09-09T05:10:12,944 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints' via 2025-09-09T05:10:12,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,945 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,945 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,945 even if it does not contain any `.py` files. 2025-09-09T05:10:12,945 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,946 directory, all directories are treated like packages. 2025-09-09T05:10:12,946 ******************************************************************************** 2025-09-09T05:10:12,946 !! 2025-09-09T05:10:12,946 check.warn(importable) 2025-09-09T05:10:12,946 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:12,946 !! 2025-09-09T05:10:12,946 ******************************************************************************** 2025-09-09T05:10:12,946 ############################ 2025-09-09T05:10:12,946 # Package would be ignored # 2025-09-09T05:10:12,946 ############################ 2025-09-09T05:10:12,947 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' as an importable package[^1], 2025-09-09T05:10:12,947 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,947 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,947 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' is explicitly added 2025-09-09T05:10:12,947 to the `packages` configuration field. 2025-09-09T05:10:12,947 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,947 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,947 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,947 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,948 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' to be distributed and are 2025-09-09T05:10:12,948 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.init' via 2025-09-09T05:10:12,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,948 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,948 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,948 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,949 even if it does not contain any `.py` files. 2025-09-09T05:10:12,949 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,949 directory, all directories are treated like packages. 2025-09-09T05:10:12,949 ******************************************************************************** 2025-09-09T05:10:12,949 !! 2025-09-09T05:10:12,949 check.warn(importable) 2025-09-09T05:10:12,949 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:12,950 !! 2025-09-09T05:10:12,950 ******************************************************************************** 2025-09-09T05:10:12,950 ############################ 2025-09-09T05:10:12,950 # Package would be ignored # 2025-09-09T05:10:12,950 ############################ 2025-09-09T05:10:12,950 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:12,950 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,950 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,950 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' is explicitly added 2025-09-09T05:10:12,950 to the `packages` configuration field. 2025-09-09T05:10:12,951 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,951 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,951 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,951 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,951 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:12,951 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_restraints.swarm_0' via 2025-09-09T05:10:12,951 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,952 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,952 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,952 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,952 even if it does not contain any `.py` files. 2025-09-09T05:10:12,952 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,952 directory, all directories are treated like packages. 2025-09-09T05:10:12,953 ******************************************************************************** 2025-09-09T05:10:12,953 !! 2025-09-09T05:10:12,953 check.warn(importable) 2025-09-09T05:10:12,953 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short' is absent from the `packages` configuration. 2025-09-09T05:10:12,953 !! 2025-09-09T05:10:12,953 ******************************************************************************** 2025-09-09T05:10:12,953 ############################ 2025-09-09T05:10:12,953 # Package would be ignored # 2025-09-09T05:10:12,953 ############################ 2025-09-09T05:10:12,953 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short' as an importable package[^1], 2025-09-09T05:10:12,953 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,954 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,954 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short' is explicitly added 2025-09-09T05:10:12,954 to the `packages` configuration field. 2025-09-09T05:10:12,954 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,954 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,954 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,954 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,954 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,955 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short' to be distributed and are 2025-09-09T05:10:12,955 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short' via 2025-09-09T05:10:12,955 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,955 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,955 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,955 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,955 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,956 even if it does not contain any `.py` files. 2025-09-09T05:10:12,956 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,956 directory, all directories are treated like packages. 2025-09-09T05:10:12,956 ******************************************************************************** 2025-09-09T05:10:12,956 !! 2025-09-09T05:10:12,956 check.warn(importable) 2025-09-09T05:10:12,956 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:12,956 !! 2025-09-09T05:10:12,956 ******************************************************************************** 2025-09-09T05:10:12,956 ############################ 2025-09-09T05:10:12,957 # Package would be ignored # 2025-09-09T05:10:12,957 ############################ 2025-09-09T05:10:12,957 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.init' as an importable package[^1], 2025-09-09T05:10:12,957 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,957 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,957 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.init' is explicitly added 2025-09-09T05:10:12,957 to the `packages` configuration field. 2025-09-09T05:10:12,957 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,957 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,957 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,958 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,958 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.init' to be distributed and are 2025-09-09T05:10:12,958 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.init' via 2025-09-09T05:10:12,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,958 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,958 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,958 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,959 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,959 even if it does not contain any `.py` files. 2025-09-09T05:10:12,959 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,959 directory, all directories are treated like packages. 2025-09-09T05:10:12,959 ******************************************************************************** 2025-09-09T05:10:12,959 !! 2025-09-09T05:10:12,959 check.warn(importable) 2025-09-09T05:10:12,959 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:12,960 !! 2025-09-09T05:10:12,960 ******************************************************************************** 2025-09-09T05:10:12,960 ############################ 2025-09-09T05:10:12,960 # Package would be ignored # 2025-09-09T05:10:12,960 ############################ 2025-09-09T05:10:12,960 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:12,960 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,960 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,960 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' is explicitly added 2025-09-09T05:10:12,960 to the `packages` configuration field. 2025-09-09T05:10:12,961 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,961 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,961 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,961 If you don't want 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' to be distributed and are 2025-09-09T05:10:12,961 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire2_short.swarm_0' via 2025-09-09T05:10:12,962 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,962 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,962 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,962 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,962 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,962 even if it does not contain any `.py` files. 2025-09-09T05:10:12,962 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,963 directory, all directories are treated like packages. 2025-09-09T05:10:12,963 ******************************************************************************** 2025-09-09T05:10:12,963 !! 2025-09-09T05:10:12,963 check.warn(importable) 2025-09-09T05:10:12,963 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long' is absent from the `packages` configuration. 2025-09-09T05:10:12,963 !! 2025-09-09T05:10:12,963 ******************************************************************************** 2025-09-09T05:10:12,963 ############################ 2025-09-09T05:10:12,963 # Package would be ignored # 2025-09-09T05:10:12,964 ############################ 2025-09-09T05:10:12,964 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long' as an importable package[^1], 2025-09-09T05:10:12,964 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,964 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,964 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long' is explicitly added 2025-09-09T05:10:12,964 to the `packages` configuration field. 2025-09-09T05:10:12,964 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,964 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,965 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,965 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,965 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long' to be distributed and are 2025-09-09T05:10:12,965 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long' via 2025-09-09T05:10:12,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,965 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,965 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,965 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,966 even if it does not contain any `.py` files. 2025-09-09T05:10:12,966 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,966 directory, all directories are treated like packages. 2025-09-09T05:10:12,966 ******************************************************************************** 2025-09-09T05:10:12,966 !! 2025-09-09T05:10:12,966 check.warn(importable) 2025-09-09T05:10:12,966 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:12,966 !! 2025-09-09T05:10:12,967 ******************************************************************************** 2025-09-09T05:10:12,967 ############################ 2025-09-09T05:10:12,967 # Package would be ignored # 2025-09-09T05:10:12,967 ############################ 2025-09-09T05:10:12,967 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.init' as an importable package[^1], 2025-09-09T05:10:12,967 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,967 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,967 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.init' is explicitly added 2025-09-09T05:10:12,967 to the `packages` configuration field. 2025-09-09T05:10:12,968 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,968 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,968 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,968 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,968 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.init' to be distributed and are 2025-09-09T05:10:12,968 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.init' via 2025-09-09T05:10:12,968 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,968 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,969 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,969 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,969 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,969 even if it does not contain any `.py` files. 2025-09-09T05:10:12,969 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,969 directory, all directories are treated like packages. 2025-09-09T05:10:12,969 ******************************************************************************** 2025-09-09T05:10:12,970 !! 2025-09-09T05:10:12,970 check.warn(importable) 2025-09-09T05:10:12,970 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:12,970 !! 2025-09-09T05:10:12,970 ******************************************************************************** 2025-09-09T05:10:12,970 ############################ 2025-09-09T05:10:12,970 # Package would be ignored # 2025-09-09T05:10:12,970 ############################ 2025-09-09T05:10:12,970 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:12,970 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,971 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,971 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' is explicitly added 2025-09-09T05:10:12,971 to the `packages` configuration field. 2025-09-09T05:10:12,971 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,971 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,971 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,971 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,972 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' to be distributed and are 2025-09-09T05:10:12,972 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_0' via 2025-09-09T05:10:12,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,972 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,972 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,973 even if it does not contain any `.py` files. 2025-09-09T05:10:12,973 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,973 directory, all directories are treated like packages. 2025-09-09T05:10:12,973 ******************************************************************************** 2025-09-09T05:10:12,973 !! 2025-09-09T05:10:12,973 check.warn(importable) 2025-09-09T05:10:12,973 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T05:10:12,973 !! 2025-09-09T05:10:12,973 ******************************************************************************** 2025-09-09T05:10:12,973 ############################ 2025-09-09T05:10:12,973 # Package would be ignored # 2025-09-09T05:10:12,974 ############################ 2025-09-09T05:10:12,974 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' as an importable package[^1], 2025-09-09T05:10:12,974 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,974 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,974 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' is explicitly added 2025-09-09T05:10:12,974 to the `packages` configuration field. 2025-09-09T05:10:12,974 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,974 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,975 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,975 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' to be distributed and are 2025-09-09T05:10:12,975 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_1' via 2025-09-09T05:10:12,975 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,975 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,975 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,975 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,976 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,976 even if it does not contain any `.py` files. 2025-09-09T05:10:12,976 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,976 directory, all directories are treated like packages. 2025-09-09T05:10:12,976 ******************************************************************************** 2025-09-09T05:10:12,976 !! 2025-09-09T05:10:12,976 check.warn(importable) 2025-09-09T05:10:12,977 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T05:10:12,977 !! 2025-09-09T05:10:12,977 ******************************************************************************** 2025-09-09T05:10:12,977 ############################ 2025-09-09T05:10:12,977 # Package would be ignored # 2025-09-09T05:10:12,977 ############################ 2025-09-09T05:10:12,977 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' as an importable package[^1], 2025-09-09T05:10:12,977 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,977 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,977 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' is explicitly added 2025-09-09T05:10:12,978 to the `packages` configuration field. 2025-09-09T05:10:12,978 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,978 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,978 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,978 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' to be distributed and are 2025-09-09T05:10:12,978 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_2' via 2025-09-09T05:10:12,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,979 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,979 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,979 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,979 even if it does not contain any `.py` files. 2025-09-09T05:10:12,979 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,979 directory, all directories are treated like packages. 2025-09-09T05:10:12,980 ******************************************************************************** 2025-09-09T05:10:12,980 !! 2025-09-09T05:10:12,980 check.warn(importable) 2025-09-09T05:10:12,980 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T05:10:12,980 !! 2025-09-09T05:10:12,980 ******************************************************************************** 2025-09-09T05:10:12,980 ############################ 2025-09-09T05:10:12,980 # Package would be ignored # 2025-09-09T05:10:12,980 ############################ 2025-09-09T05:10:12,980 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' as an importable package[^1], 2025-09-09T05:10:12,981 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,981 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,981 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' is explicitly added 2025-09-09T05:10:12,981 to the `packages` configuration field. 2025-09-09T05:10:12,981 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,981 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,981 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,982 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' to be distributed and are 2025-09-09T05:10:12,982 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_3' via 2025-09-09T05:10:12,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,982 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,982 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,982 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,983 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,983 even if it does not contain any `.py` files. 2025-09-09T05:10:12,983 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,983 directory, all directories are treated like packages. 2025-09-09T05:10:12,983 ******************************************************************************** 2025-09-09T05:10:12,983 !! 2025-09-09T05:10:12,983 check.warn(importable) 2025-09-09T05:10:12,983 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T05:10:12,983 !! 2025-09-09T05:10:12,983 ******************************************************************************** 2025-09-09T05:10:12,983 ############################ 2025-09-09T05:10:12,984 # Package would be ignored # 2025-09-09T05:10:12,984 ############################ 2025-09-09T05:10:12,984 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' as an importable package[^1], 2025-09-09T05:10:12,984 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,984 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,984 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' is explicitly added 2025-09-09T05:10:12,984 to the `packages` configuration field. 2025-09-09T05:10:12,984 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,984 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,984 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,985 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,985 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' to be distributed and are 2025-09-09T05:10:12,985 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_long.swarm_4' via 2025-09-09T05:10:12,985 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,985 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,985 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,986 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,986 even if it does not contain any `.py` files. 2025-09-09T05:10:12,986 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,986 directory, all directories are treated like packages. 2025-09-09T05:10:12,986 ******************************************************************************** 2025-09-09T05:10:12,986 !! 2025-09-09T05:10:12,986 check.warn(importable) 2025-09-09T05:10:12,987 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short' is absent from the `packages` configuration. 2025-09-09T05:10:12,987 !! 2025-09-09T05:10:12,987 ******************************************************************************** 2025-09-09T05:10:12,987 ############################ 2025-09-09T05:10:12,987 # Package would be ignored # 2025-09-09T05:10:12,987 ############################ 2025-09-09T05:10:12,987 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short' as an importable package[^1], 2025-09-09T05:10:12,987 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,987 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,987 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short' is explicitly added 2025-09-09T05:10:12,988 to the `packages` configuration field. 2025-09-09T05:10:12,988 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,988 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,988 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,988 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short' to be distributed and are 2025-09-09T05:10:12,988 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short' via 2025-09-09T05:10:12,989 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,989 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,989 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,989 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,989 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,989 even if it does not contain any `.py` files. 2025-09-09T05:10:12,989 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,990 directory, all directories are treated like packages. 2025-09-09T05:10:12,990 ******************************************************************************** 2025-09-09T05:10:12,990 !! 2025-09-09T05:10:12,990 check.warn(importable) 2025-09-09T05:10:12,990 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:12,990 !! 2025-09-09T05:10:12,990 ******************************************************************************** 2025-09-09T05:10:12,990 ############################ 2025-09-09T05:10:12,990 # Package would be ignored # 2025-09-09T05:10:12,990 ############################ 2025-09-09T05:10:12,991 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.init' as an importable package[^1], 2025-09-09T05:10:12,991 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,991 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,991 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.init' is explicitly added 2025-09-09T05:10:12,991 to the `packages` configuration field. 2025-09-09T05:10:12,991 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,991 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,991 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,991 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,992 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.init' to be distributed and are 2025-09-09T05:10:12,992 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.init' via 2025-09-09T05:10:12,992 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,992 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,992 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,992 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,992 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,993 even if it does not contain any `.py` files. 2025-09-09T05:10:12,993 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,993 directory, all directories are treated like packages. 2025-09-09T05:10:12,993 ******************************************************************************** 2025-09-09T05:10:12,993 !! 2025-09-09T05:10:12,993 check.warn(importable) 2025-09-09T05:10:12,993 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:12,993 !! 2025-09-09T05:10:12,994 ******************************************************************************** 2025-09-09T05:10:12,994 ############################ 2025-09-09T05:10:12,994 # Package would be ignored # 2025-09-09T05:10:12,994 ############################ 2025-09-09T05:10:12,994 Python recognizes 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:12,994 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,994 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,994 package, please make sure that 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' is explicitly added 2025-09-09T05:10:12,994 to the `packages` configuration field. 2025-09-09T05:10:12,994 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,995 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,995 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,995 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,995 If you don't want 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' to be distributed and are 2025-09-09T05:10:12,995 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dfire_short.swarm_0' via 2025-09-09T05:10:12,995 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,995 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,995 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,996 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,996 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,996 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:12,996 even if it does not contain any `.py` files. 2025-09-09T05:10:12,996 On the other hand, currently there is no concept of package data 2025-09-09T05:10:12,996 directory, all directories are treated like packages. 2025-09-09T05:10:12,996 ******************************************************************************** 2025-09-09T05:10:12,996 !! 2025-09-09T05:10:12,997 check.warn(importable) 2025-09-09T05:10:12,997 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:12,997 !! 2025-09-09T05:10:12,997 ******************************************************************************** 2025-09-09T05:10:12,997 ############################ 2025-09-09T05:10:12,997 # Package would be ignored # 2025-09-09T05:10:12,997 ############################ 2025-09-09T05:10:12,997 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints' as an importable package[^1], 2025-09-09T05:10:12,997 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:12,997 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:12,998 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints' is explicitly added 2025-09-09T05:10:12,998 to the `packages` configuration field. 2025-09-09T05:10:12,998 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:12,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:12,998 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:12,998 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:12,998 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:12,999 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints' to be distributed and are 2025-09-09T05:10:12,999 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints' via 2025-09-09T05:10:12,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:12,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:12,999 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:12,999 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:12,999 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:12,999 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,000 even if it does not contain any `.py` files. 2025-09-09T05:10:13,000 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,000 directory, all directories are treated like packages. 2025-09-09T05:10:13,000 ******************************************************************************** 2025-09-09T05:10:13,000 !! 2025-09-09T05:10:13,000 check.warn(importable) 2025-09-09T05:10:13,000 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,000 !! 2025-09-09T05:10:13,000 ******************************************************************************** 2025-09-09T05:10:13,001 ############################ 2025-09-09T05:10:13,001 # Package would be ignored # 2025-09-09T05:10:13,001 ############################ 2025-09-09T05:10:13,001 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,001 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,001 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,001 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.init' is explicitly added 2025-09-09T05:10:13,001 to the `packages` configuration field. 2025-09-09T05:10:13,001 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,001 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,002 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,002 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,002 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.init' to be distributed and are 2025-09-09T05:10:13,002 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.init' via 2025-09-09T05:10:13,002 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,002 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,003 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,003 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,003 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,003 even if it does not contain any `.py` files. 2025-09-09T05:10:13,003 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,003 directory, all directories are treated like packages. 2025-09-09T05:10:13,003 ******************************************************************************** 2025-09-09T05:10:13,003 !! 2025-09-09T05:10:13,004 check.warn(importable) 2025-09-09T05:10:13,004 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,004 !! 2025-09-09T05:10:13,004 ******************************************************************************** 2025-09-09T05:10:13,004 ############################ 2025-09-09T05:10:13,004 # Package would be ignored # 2025-09-09T05:10:13,004 ############################ 2025-09-09T05:10:13,004 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,004 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,004 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,004 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,005 to the `packages` configuration field. 2025-09-09T05:10:13,005 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,005 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,005 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,005 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,005 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,005 If you don't want 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,005 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_restraints.swarm_0' via 2025-09-09T05:10:13,006 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,006 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,006 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,006 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,006 even if it does not contain any `.py` files. 2025-09-09T05:10:13,006 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,007 directory, all directories are treated like packages. 2025-09-09T05:10:13,007 ******************************************************************************** 2025-09-09T05:10:13,007 !! 2025-09-09T05:10:13,007 check.warn(importable) 2025-09-09T05:10:13,007 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,007 !! 2025-09-09T05:10:13,007 ******************************************************************************** 2025-09-09T05:10:13,007 ############################ 2025-09-09T05:10:13,007 # Package would be ignored # 2025-09-09T05:10:13,007 ############################ 2025-09-09T05:10:13,007 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short' as an importable package[^1], 2025-09-09T05:10:13,008 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,008 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,008 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short' is explicitly added 2025-09-09T05:10:13,008 to the `packages` configuration field. 2025-09-09T05:10:13,008 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,008 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,008 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,009 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short' to be distributed and are 2025-09-09T05:10:13,009 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short' via 2025-09-09T05:10:13,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,009 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,009 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,010 even if it does not contain any `.py` files. 2025-09-09T05:10:13,010 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,010 directory, all directories are treated like packages. 2025-09-09T05:10:13,010 ******************************************************************************** 2025-09-09T05:10:13,010 !! 2025-09-09T05:10:13,010 check.warn(importable) 2025-09-09T05:10:13,010 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,010 !! 2025-09-09T05:10:13,010 ******************************************************************************** 2025-09-09T05:10:13,011 ############################ 2025-09-09T05:10:13,011 # Package would be ignored # 2025-09-09T05:10:13,011 ############################ 2025-09-09T05:10:13,011 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.init' as an importable package[^1], 2025-09-09T05:10:13,011 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,011 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,011 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.init' is explicitly added 2025-09-09T05:10:13,011 to the `packages` configuration field. 2025-09-09T05:10:13,012 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,012 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,012 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,012 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,012 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.init' to be distributed and are 2025-09-09T05:10:13,012 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.init' via 2025-09-09T05:10:13,012 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,012 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,013 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,013 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,013 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,013 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,013 even if it does not contain any `.py` files. 2025-09-09T05:10:13,013 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,013 directory, all directories are treated like packages. 2025-09-09T05:10:13,013 ******************************************************************************** 2025-09-09T05:10:13,014 !! 2025-09-09T05:10:13,014 check.warn(importable) 2025-09-09T05:10:13,014 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,014 !! 2025-09-09T05:10:13,014 ******************************************************************************** 2025-09-09T05:10:13,014 ############################ 2025-09-09T05:10:13,014 # Package would be ignored # 2025-09-09T05:10:13,014 ############################ 2025-09-09T05:10:13,014 Python recognizes 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,014 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,015 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,015 package, please make sure that 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' is explicitly added 2025-09-09T05:10:13,015 to the `packages` configuration field. 2025-09-09T05:10:13,015 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,015 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,015 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,016 If you don't want 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,016 already explicitly excluding 'lightdock.test.bin.golden_data.regression_dna_short.swarm_0' via 2025-09-09T05:10:13,016 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,016 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,016 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,016 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,016 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,016 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,016 even if it does not contain any `.py` files. 2025-09-09T05:10:13,017 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,017 directory, all directories are treated like packages. 2025-09-09T05:10:13,017 ******************************************************************************** 2025-09-09T05:10:13,017 !! 2025-09-09T05:10:13,017 check.warn(importable) 2025-09-09T05:10:13,017 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long' is absent from the `packages` configuration. 2025-09-09T05:10:13,017 !! 2025-09-09T05:10:13,017 ******************************************************************************** 2025-09-09T05:10:13,017 ############################ 2025-09-09T05:10:13,017 # Package would be ignored # 2025-09-09T05:10:13,018 ############################ 2025-09-09T05:10:13,018 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long' as an importable package[^1], 2025-09-09T05:10:13,018 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,018 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,018 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long' is explicitly added 2025-09-09T05:10:13,018 to the `packages` configuration field. 2025-09-09T05:10:13,018 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,018 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,019 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,019 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long' to be distributed and are 2025-09-09T05:10:13,019 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long' via 2025-09-09T05:10:13,019 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,019 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,019 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,019 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,020 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,020 even if it does not contain any `.py` files. 2025-09-09T05:10:13,020 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,020 directory, all directories are treated like packages. 2025-09-09T05:10:13,020 ******************************************************************************** 2025-09-09T05:10:13,020 !! 2025-09-09T05:10:13,020 check.warn(importable) 2025-09-09T05:10:13,020 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,021 !! 2025-09-09T05:10:13,021 ******************************************************************************** 2025-09-09T05:10:13,021 ############################ 2025-09-09T05:10:13,021 # Package would be ignored # 2025-09-09T05:10:13,021 ############################ 2025-09-09T05:10:13,021 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' as an importable package[^1], 2025-09-09T05:10:13,021 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,021 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,021 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' is explicitly added 2025-09-09T05:10:13,021 to the `packages` configuration field. 2025-09-09T05:10:13,022 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,022 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,022 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,022 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,022 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' to be distributed and are 2025-09-09T05:10:13,022 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.init' via 2025-09-09T05:10:13,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,023 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,023 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,023 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,023 even if it does not contain any `.py` files. 2025-09-09T05:10:13,023 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,023 directory, all directories are treated like packages. 2025-09-09T05:10:13,024 ******************************************************************************** 2025-09-09T05:10:13,024 !! 2025-09-09T05:10:13,024 check.warn(importable) 2025-09-09T05:10:13,024 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,024 !! 2025-09-09T05:10:13,024 ******************************************************************************** 2025-09-09T05:10:13,024 ############################ 2025-09-09T05:10:13,024 # Package would be ignored # 2025-09-09T05:10:13,024 ############################ 2025-09-09T05:10:13,024 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,025 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,025 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,025 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' is explicitly added 2025-09-09T05:10:13,025 to the `packages` configuration field. 2025-09-09T05:10:13,025 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,025 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,025 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,025 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,026 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,026 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' to be distributed and are 2025-09-09T05:10:13,026 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_0' via 2025-09-09T05:10:13,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,026 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,026 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,026 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,027 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,027 even if it does not contain any `.py` files. 2025-09-09T05:10:13,027 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,027 directory, all directories are treated like packages. 2025-09-09T05:10:13,027 ******************************************************************************** 2025-09-09T05:10:13,027 !! 2025-09-09T05:10:13,027 check.warn(importable) 2025-09-09T05:10:13,027 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is absent from the `packages` configuration. 2025-09-09T05:10:13,027 !! 2025-09-09T05:10:13,027 ******************************************************************************** 2025-09-09T05:10:13,028 ############################ 2025-09-09T05:10:13,028 # Package would be ignored # 2025-09-09T05:10:13,028 ############################ 2025-09-09T05:10:13,028 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' as an importable package[^1], 2025-09-09T05:10:13,028 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,028 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,028 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' is explicitly added 2025-09-09T05:10:13,028 to the `packages` configuration field. 2025-09-09T05:10:13,028 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,029 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,029 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,029 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,029 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' to be distributed and are 2025-09-09T05:10:13,029 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_1' via 2025-09-09T05:10:13,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,029 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,030 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,030 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,030 even if it does not contain any `.py` files. 2025-09-09T05:10:13,030 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,030 directory, all directories are treated like packages. 2025-09-09T05:10:13,030 ******************************************************************************** 2025-09-09T05:10:13,030 !! 2025-09-09T05:10:13,031 check.warn(importable) 2025-09-09T05:10:13,031 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is absent from the `packages` configuration. 2025-09-09T05:10:13,031 !! 2025-09-09T05:10:13,031 ******************************************************************************** 2025-09-09T05:10:13,031 ############################ 2025-09-09T05:10:13,031 # Package would be ignored # 2025-09-09T05:10:13,031 ############################ 2025-09-09T05:10:13,031 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' as an importable package[^1], 2025-09-09T05:10:13,031 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,031 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,031 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' is explicitly added 2025-09-09T05:10:13,032 to the `packages` configuration field. 2025-09-09T05:10:13,032 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,032 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,032 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,032 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,032 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,032 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' to be distributed and are 2025-09-09T05:10:13,032 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_2' via 2025-09-09T05:10:13,033 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,033 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,033 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,033 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,033 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,033 even if it does not contain any `.py` files. 2025-09-09T05:10:13,033 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,034 directory, all directories are treated like packages. 2025-09-09T05:10:13,034 ******************************************************************************** 2025-09-09T05:10:13,034 !! 2025-09-09T05:10:13,034 check.warn(importable) 2025-09-09T05:10:13,034 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is absent from the `packages` configuration. 2025-09-09T05:10:13,034 !! 2025-09-09T05:10:13,034 ******************************************************************************** 2025-09-09T05:10:13,034 ############################ 2025-09-09T05:10:13,034 # Package would be ignored # 2025-09-09T05:10:13,034 ############################ 2025-09-09T05:10:13,035 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' as an importable package[^1], 2025-09-09T05:10:13,035 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,035 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,035 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' is explicitly added 2025-09-09T05:10:13,035 to the `packages` configuration field. 2025-09-09T05:10:13,035 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,035 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,035 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,036 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,036 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,036 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' to be distributed and are 2025-09-09T05:10:13,036 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_3' via 2025-09-09T05:10:13,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,036 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,036 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,037 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,037 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,037 even if it does not contain any `.py` files. 2025-09-09T05:10:13,037 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,037 directory, all directories are treated like packages. 2025-09-09T05:10:13,037 ******************************************************************************** 2025-09-09T05:10:13,037 !! 2025-09-09T05:10:13,037 check.warn(importable) 2025-09-09T05:10:13,037 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is absent from the `packages` configuration. 2025-09-09T05:10:13,038 !! 2025-09-09T05:10:13,038 ******************************************************************************** 2025-09-09T05:10:13,038 ############################ 2025-09-09T05:10:13,038 # Package would be ignored # 2025-09-09T05:10:13,038 ############################ 2025-09-09T05:10:13,038 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' as an importable package[^1], 2025-09-09T05:10:13,038 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,038 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,038 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' is explicitly added 2025-09-09T05:10:13,038 to the `packages` configuration field. 2025-09-09T05:10:13,039 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,039 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,039 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,039 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,039 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' to be distributed and are 2025-09-09T05:10:13,039 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_long.swarm_4' via 2025-09-09T05:10:13,039 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,040 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,040 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,040 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,040 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,040 even if it does not contain any `.py` files. 2025-09-09T05:10:13,040 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,040 directory, all directories are treated like packages. 2025-09-09T05:10:13,041 ******************************************************************************** 2025-09-09T05:10:13,041 !! 2025-09-09T05:10:13,041 check.warn(importable) 2025-09-09T05:10:13,041 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,041 !! 2025-09-09T05:10:13,041 ******************************************************************************** 2025-09-09T05:10:13,041 ############################ 2025-09-09T05:10:13,041 # Package would be ignored # 2025-09-09T05:10:13,041 ############################ 2025-09-09T05:10:13,041 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' as an importable package[^1], 2025-09-09T05:10:13,041 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,042 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,042 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' is explicitly added 2025-09-09T05:10:13,042 to the `packages` configuration field. 2025-09-09T05:10:13,042 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,042 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,042 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,043 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' to be distributed and are 2025-09-09T05:10:13,043 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints' via 2025-09-09T05:10:13,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,043 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,043 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,044 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,044 even if it does not contain any `.py` files. 2025-09-09T05:10:13,044 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,044 directory, all directories are treated like packages. 2025-09-09T05:10:13,044 ******************************************************************************** 2025-09-09T05:10:13,044 !! 2025-09-09T05:10:13,044 check.warn(importable) 2025-09-09T05:10:13,044 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,044 !! 2025-09-09T05:10:13,044 ******************************************************************************** 2025-09-09T05:10:13,044 ############################ 2025-09-09T05:10:13,045 # Package would be ignored # 2025-09-09T05:10:13,045 ############################ 2025-09-09T05:10:13,045 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,045 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,045 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,045 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' is explicitly added 2025-09-09T05:10:13,045 to the `packages` configuration field. 2025-09-09T05:10:13,045 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,045 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,045 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,046 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,046 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' to be distributed and are 2025-09-09T05:10:13,046 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.init' via 2025-09-09T05:10:13,046 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,046 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,046 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,047 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,047 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,047 even if it does not contain any `.py` files. 2025-09-09T05:10:13,047 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,047 directory, all directories are treated like packages. 2025-09-09T05:10:13,047 ******************************************************************************** 2025-09-09T05:10:13,047 !! 2025-09-09T05:10:13,047 check.warn(importable) 2025-09-09T05:10:13,048 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,048 !! 2025-09-09T05:10:13,048 ******************************************************************************** 2025-09-09T05:10:13,048 ############################ 2025-09-09T05:10:13,048 # Package would be ignored # 2025-09-09T05:10:13,048 ############################ 2025-09-09T05:10:13,048 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,048 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,048 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,049 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,049 to the `packages` configuration field. 2025-09-09T05:10:13,049 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,049 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,049 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,049 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,049 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,050 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_restraints.swarm_0' via 2025-09-09T05:10:13,050 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,050 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,050 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,050 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,050 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,050 even if it does not contain any `.py` files. 2025-09-09T05:10:13,051 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,051 directory, all directories are treated like packages. 2025-09-09T05:10:13,051 ******************************************************************************** 2025-09-09T05:10:13,051 !! 2025-09-09T05:10:13,051 check.warn(importable) 2025-09-09T05:10:13,051 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,051 !! 2025-09-09T05:10:13,051 ******************************************************************************** 2025-09-09T05:10:13,051 ############################ 2025-09-09T05:10:13,051 # Package would be ignored # 2025-09-09T05:10:13,052 ############################ 2025-09-09T05:10:13,052 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short' as an importable package[^1], 2025-09-09T05:10:13,052 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,052 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,052 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short' is explicitly added 2025-09-09T05:10:13,052 to the `packages` configuration field. 2025-09-09T05:10:13,052 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,052 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,052 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,052 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,053 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,053 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short' to be distributed and are 2025-09-09T05:10:13,053 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short' via 2025-09-09T05:10:13,053 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,053 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,053 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,053 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,053 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,054 even if it does not contain any `.py` files. 2025-09-09T05:10:13,054 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,054 directory, all directories are treated like packages. 2025-09-09T05:10:13,054 ******************************************************************************** 2025-09-09T05:10:13,054 !! 2025-09-09T05:10:13,054 check.warn(importable) 2025-09-09T05:10:13,054 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,054 !! 2025-09-09T05:10:13,055 ******************************************************************************** 2025-09-09T05:10:13,055 ############################ 2025-09-09T05:10:13,055 # Package would be ignored # 2025-09-09T05:10:13,055 ############################ 2025-09-09T05:10:13,055 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' as an importable package[^1], 2025-09-09T05:10:13,055 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,055 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,055 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' is explicitly added 2025-09-09T05:10:13,055 to the `packages` configuration field. 2025-09-09T05:10:13,055 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,056 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,056 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,056 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,056 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' to be distributed and are 2025-09-09T05:10:13,056 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.init' via 2025-09-09T05:10:13,056 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,056 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,056 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,057 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,057 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,057 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,057 even if it does not contain any `.py` files. 2025-09-09T05:10:13,057 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,057 directory, all directories are treated like packages. 2025-09-09T05:10:13,057 ******************************************************************************** 2025-09-09T05:10:13,058 !! 2025-09-09T05:10:13,058 check.warn(importable) 2025-09-09T05:10:13,058 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,058 !! 2025-09-09T05:10:13,058 ******************************************************************************** 2025-09-09T05:10:13,058 ############################ 2025-09-09T05:10:13,058 # Package would be ignored # 2025-09-09T05:10:13,058 ############################ 2025-09-09T05:10:13,058 Python recognizes 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,058 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,058 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,059 package, please make sure that 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' is explicitly added 2025-09-09T05:10:13,059 to the `packages` configuration field. 2025-09-09T05:10:13,059 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,059 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,059 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,059 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,059 If you don't want 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,060 already explicitly excluding 'lightdock.test.bin.golden_data.regression_fastdfire_short.swarm_0' via 2025-09-09T05:10:13,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,060 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,060 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,061 even if it does not contain any `.py` files. 2025-09-09T05:10:13,061 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,061 directory, all directories are treated like packages. 2025-09-09T05:10:13,061 ******************************************************************************** 2025-09-09T05:10:13,061 !! 2025-09-09T05:10:13,061 check.warn(importable) 2025-09-09T05:10:13,061 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long' is absent from the `packages` configuration. 2025-09-09T05:10:13,061 !! 2025-09-09T05:10:13,061 ******************************************************************************** 2025-09-09T05:10:13,062 ############################ 2025-09-09T05:10:13,062 # Package would be ignored # 2025-09-09T05:10:13,062 ############################ 2025-09-09T05:10:13,062 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long' as an importable package[^1], 2025-09-09T05:10:13,062 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,062 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,062 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long' is explicitly added 2025-09-09T05:10:13,062 to the `packages` configuration field. 2025-09-09T05:10:13,062 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,062 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,063 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,063 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long' to be distributed and are 2025-09-09T05:10:13,063 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long' via 2025-09-09T05:10:13,063 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,063 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,063 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,063 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,064 even if it does not contain any `.py` files. 2025-09-09T05:10:13,064 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,064 directory, all directories are treated like packages. 2025-09-09T05:10:13,064 ******************************************************************************** 2025-09-09T05:10:13,064 !! 2025-09-09T05:10:13,064 check.warn(importable) 2025-09-09T05:10:13,064 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,065 !! 2025-09-09T05:10:13,065 ******************************************************************************** 2025-09-09T05:10:13,065 ############################ 2025-09-09T05:10:13,065 # Package would be ignored # 2025-09-09T05:10:13,065 ############################ 2025-09-09T05:10:13,065 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.init' as an importable package[^1], 2025-09-09T05:10:13,065 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,065 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,065 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.init' is explicitly added 2025-09-09T05:10:13,065 to the `packages` configuration field. 2025-09-09T05:10:13,066 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,066 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,066 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,066 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.init' to be distributed and are 2025-09-09T05:10:13,066 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.init' via 2025-09-09T05:10:13,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,067 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,067 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,067 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,067 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,067 even if it does not contain any `.py` files. 2025-09-09T05:10:13,067 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,067 directory, all directories are treated like packages. 2025-09-09T05:10:13,067 ******************************************************************************** 2025-09-09T05:10:13,068 !! 2025-09-09T05:10:13,068 check.warn(importable) 2025-09-09T05:10:13,068 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,068 !! 2025-09-09T05:10:13,068 ******************************************************************************** 2025-09-09T05:10:13,068 ############################ 2025-09-09T05:10:13,068 # Package would be ignored # 2025-09-09T05:10:13,068 ############################ 2025-09-09T05:10:13,068 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,068 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,069 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,069 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' is explicitly added 2025-09-09T05:10:13,069 to the `packages` configuration field. 2025-09-09T05:10:13,069 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,069 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,069 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,069 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,070 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' to be distributed and are 2025-09-09T05:10:13,070 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_long.swarm_0' via 2025-09-09T05:10:13,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,070 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,070 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,070 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,071 even if it does not contain any `.py` files. 2025-09-09T05:10:13,071 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,071 directory, all directories are treated like packages. 2025-09-09T05:10:13,071 ******************************************************************************** 2025-09-09T05:10:13,071 !! 2025-09-09T05:10:13,071 check.warn(importable) 2025-09-09T05:10:13,071 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,071 !! 2025-09-09T05:10:13,071 ******************************************************************************** 2025-09-09T05:10:13,072 ############################ 2025-09-09T05:10:13,072 # Package would be ignored # 2025-09-09T05:10:13,072 ############################ 2025-09-09T05:10:13,072 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short' as an importable package[^1], 2025-09-09T05:10:13,072 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,072 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,072 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short' is explicitly added 2025-09-09T05:10:13,072 to the `packages` configuration field. 2025-09-09T05:10:13,072 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,073 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,073 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,073 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short' to be distributed and are 2025-09-09T05:10:13,073 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short' via 2025-09-09T05:10:13,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,073 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,073 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,074 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,074 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,074 even if it does not contain any `.py` files. 2025-09-09T05:10:13,074 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,074 directory, all directories are treated like packages. 2025-09-09T05:10:13,074 ******************************************************************************** 2025-09-09T05:10:13,074 !! 2025-09-09T05:10:13,075 check.warn(importable) 2025-09-09T05:10:13,075 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,075 !! 2025-09-09T05:10:13,075 ******************************************************************************** 2025-09-09T05:10:13,075 ############################ 2025-09-09T05:10:13,075 # Package would be ignored # 2025-09-09T05:10:13,075 ############################ 2025-09-09T05:10:13,075 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.init' as an importable package[^1], 2025-09-09T05:10:13,075 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,075 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,076 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.init' is explicitly added 2025-09-09T05:10:13,076 to the `packages` configuration field. 2025-09-09T05:10:13,076 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,076 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,076 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,076 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.init' to be distributed and are 2025-09-09T05:10:13,077 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.init' via 2025-09-09T05:10:13,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,077 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,077 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,077 even if it does not contain any `.py` files. 2025-09-09T05:10:13,077 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,078 directory, all directories are treated like packages. 2025-09-09T05:10:13,078 ******************************************************************************** 2025-09-09T05:10:13,078 !! 2025-09-09T05:10:13,078 check.warn(importable) 2025-09-09T05:10:13,078 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,078 !! 2025-09-09T05:10:13,078 ******************************************************************************** 2025-09-09T05:10:13,078 ############################ 2025-09-09T05:10:13,078 # Package would be ignored # 2025-09-09T05:10:13,078 ############################ 2025-09-09T05:10:13,079 Python recognizes 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,079 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,079 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,079 package, please make sure that 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' is explicitly added 2025-09-09T05:10:13,079 to the `packages` configuration field. 2025-09-09T05:10:13,079 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,079 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,079 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,080 If you don't want 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,080 already explicitly excluding 'lightdock.test.bin.golden_data.regression_mj3h_short.swarm_0' via 2025-09-09T05:10:13,080 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,080 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,080 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,080 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,081 even if it does not contain any `.py` files. 2025-09-09T05:10:13,081 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,081 directory, all directories are treated like packages. 2025-09-09T05:10:13,081 ******************************************************************************** 2025-09-09T05:10:13,081 !! 2025-09-09T05:10:13,081 check.warn(importable) 2025-09-09T05:10:13,081 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long' is absent from the `packages` configuration. 2025-09-09T05:10:13,081 !! 2025-09-09T05:10:13,082 ******************************************************************************** 2025-09-09T05:10:13,082 ############################ 2025-09-09T05:10:13,082 # Package would be ignored # 2025-09-09T05:10:13,082 ############################ 2025-09-09T05:10:13,082 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long' as an importable package[^1], 2025-09-09T05:10:13,082 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,082 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,082 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long' is explicitly added 2025-09-09T05:10:13,082 to the `packages` configuration field. 2025-09-09T05:10:13,082 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,083 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,083 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,083 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,083 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long' to be distributed and are 2025-09-09T05:10:13,083 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long' via 2025-09-09T05:10:13,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,083 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,084 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,084 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,084 even if it does not contain any `.py` files. 2025-09-09T05:10:13,084 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,084 directory, all directories are treated like packages. 2025-09-09T05:10:13,084 ******************************************************************************** 2025-09-09T05:10:13,085 !! 2025-09-09T05:10:13,085 check.warn(importable) 2025-09-09T05:10:13,085 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,085 !! 2025-09-09T05:10:13,085 ******************************************************************************** 2025-09-09T05:10:13,085 ############################ 2025-09-09T05:10:13,085 # Package would be ignored # 2025-09-09T05:10:13,085 ############################ 2025-09-09T05:10:13,085 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.init' as an importable package[^1], 2025-09-09T05:10:13,085 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,086 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,086 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.init' is explicitly added 2025-09-09T05:10:13,086 to the `packages` configuration field. 2025-09-09T05:10:13,086 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,086 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,086 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,087 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.init' to be distributed and are 2025-09-09T05:10:13,087 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.init' via 2025-09-09T05:10:13,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,087 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,087 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,087 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,088 even if it does not contain any `.py` files. 2025-09-09T05:10:13,088 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,088 directory, all directories are treated like packages. 2025-09-09T05:10:13,088 ******************************************************************************** 2025-09-09T05:10:13,088 !! 2025-09-09T05:10:13,088 check.warn(importable) 2025-09-09T05:10:13,088 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,088 !! 2025-09-09T05:10:13,088 ******************************************************************************** 2025-09-09T05:10:13,088 ############################ 2025-09-09T05:10:13,089 # Package would be ignored # 2025-09-09T05:10:13,089 ############################ 2025-09-09T05:10:13,089 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,089 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,089 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,089 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' is explicitly added 2025-09-09T05:10:13,089 to the `packages` configuration field. 2025-09-09T05:10:13,089 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,089 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,090 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,090 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' to be distributed and are 2025-09-09T05:10:13,090 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_long.swarm_0' via 2025-09-09T05:10:13,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,090 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,090 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,091 even if it does not contain any `.py` files. 2025-09-09T05:10:13,091 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,091 directory, all directories are treated like packages. 2025-09-09T05:10:13,091 ******************************************************************************** 2025-09-09T05:10:13,091 !! 2025-09-09T05:10:13,091 check.warn(importable) 2025-09-09T05:10:13,091 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,092 !! 2025-09-09T05:10:13,092 ******************************************************************************** 2025-09-09T05:10:13,092 ############################ 2025-09-09T05:10:13,092 # Package would be ignored # 2025-09-09T05:10:13,092 ############################ 2025-09-09T05:10:13,092 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints' as an importable package[^1], 2025-09-09T05:10:13,092 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,092 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,092 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints' is explicitly added 2025-09-09T05:10:13,092 to the `packages` configuration field. 2025-09-09T05:10:13,093 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,093 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,093 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,093 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,093 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints' to be distributed and are 2025-09-09T05:10:13,093 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints' via 2025-09-09T05:10:13,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,093 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,094 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,094 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,094 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,094 even if it does not contain any `.py` files. 2025-09-09T05:10:13,094 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,094 directory, all directories are treated like packages. 2025-09-09T05:10:13,094 ******************************************************************************** 2025-09-09T05:10:13,095 !! 2025-09-09T05:10:13,095 check.warn(importable) 2025-09-09T05:10:13,095 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,095 !! 2025-09-09T05:10:13,095 ******************************************************************************** 2025-09-09T05:10:13,095 ############################ 2025-09-09T05:10:13,095 # Package would be ignored # 2025-09-09T05:10:13,095 ############################ 2025-09-09T05:10:13,095 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,095 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,096 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,096 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' is explicitly added 2025-09-09T05:10:13,096 to the `packages` configuration field. 2025-09-09T05:10:13,096 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,096 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,096 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,097 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' to be distributed and are 2025-09-09T05:10:13,097 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.init' via 2025-09-09T05:10:13,097 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,097 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,097 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,098 even if it does not contain any `.py` files. 2025-09-09T05:10:13,098 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,098 directory, all directories are treated like packages. 2025-09-09T05:10:13,098 ******************************************************************************** 2025-09-09T05:10:13,098 !! 2025-09-09T05:10:13,098 check.warn(importable) 2025-09-09T05:10:13,098 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,098 !! 2025-09-09T05:10:13,099 ******************************************************************************** 2025-09-09T05:10:13,099 ############################ 2025-09-09T05:10:13,099 # Package would be ignored # 2025-09-09T05:10:13,099 ############################ 2025-09-09T05:10:13,099 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,099 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,099 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,099 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,099 to the `packages` configuration field. 2025-09-09T05:10:13,099 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,100 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,100 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,100 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,100 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_restraints.swarm_0' via 2025-09-09T05:10:13,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,101 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,101 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,101 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,101 even if it does not contain any `.py` files. 2025-09-09T05:10:13,101 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,101 directory, all directories are treated like packages. 2025-09-09T05:10:13,101 ******************************************************************************** 2025-09-09T05:10:13,102 !! 2025-09-09T05:10:13,102 check.warn(importable) 2025-09-09T05:10:13,102 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,102 !! 2025-09-09T05:10:13,102 ******************************************************************************** 2025-09-09T05:10:13,102 ############################ 2025-09-09T05:10:13,102 # Package would be ignored # 2025-09-09T05:10:13,102 ############################ 2025-09-09T05:10:13,102 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short' as an importable package[^1], 2025-09-09T05:10:13,102 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,103 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,103 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short' is explicitly added 2025-09-09T05:10:13,103 to the `packages` configuration field. 2025-09-09T05:10:13,103 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,103 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,103 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,104 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short' to be distributed and are 2025-09-09T05:10:13,104 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short' via 2025-09-09T05:10:13,104 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,104 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,104 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,104 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,104 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,105 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,105 even if it does not contain any `.py` files. 2025-09-09T05:10:13,105 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,105 directory, all directories are treated like packages. 2025-09-09T05:10:13,105 ******************************************************************************** 2025-09-09T05:10:13,105 !! 2025-09-09T05:10:13,105 check.warn(importable) 2025-09-09T05:10:13,105 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,105 !! 2025-09-09T05:10:13,105 ******************************************************************************** 2025-09-09T05:10:13,106 ############################ 2025-09-09T05:10:13,106 # Package would be ignored # 2025-09-09T05:10:13,106 ############################ 2025-09-09T05:10:13,106 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.init' as an importable package[^1], 2025-09-09T05:10:13,106 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,106 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,106 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.init' is explicitly added 2025-09-09T05:10:13,106 to the `packages` configuration field. 2025-09-09T05:10:13,106 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,106 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,107 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,107 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.init' to be distributed and are 2025-09-09T05:10:13,107 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.init' via 2025-09-09T05:10:13,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,107 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,107 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,107 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,108 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,108 even if it does not contain any `.py` files. 2025-09-09T05:10:13,108 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,108 directory, all directories are treated like packages. 2025-09-09T05:10:13,108 ******************************************************************************** 2025-09-09T05:10:13,108 !! 2025-09-09T05:10:13,108 check.warn(importable) 2025-09-09T05:10:13,109 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,109 !! 2025-09-09T05:10:13,109 ******************************************************************************** 2025-09-09T05:10:13,109 ############################ 2025-09-09T05:10:13,109 # Package would be ignored # 2025-09-09T05:10:13,109 ############################ 2025-09-09T05:10:13,109 Python recognizes 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,109 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,109 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,110 package, please make sure that 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' is explicitly added 2025-09-09T05:10:13,110 to the `packages` configuration field. 2025-09-09T05:10:13,110 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,110 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,110 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,110 If you don't want 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,111 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pisa_short.swarm_0' via 2025-09-09T05:10:13,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,111 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,111 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,111 even if it does not contain any `.py` files. 2025-09-09T05:10:13,112 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,112 directory, all directories are treated like packages. 2025-09-09T05:10:13,112 ******************************************************************************** 2025-09-09T05:10:13,112 !! 2025-09-09T05:10:13,112 check.warn(importable) 2025-09-09T05:10:13,112 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long' is absent from the `packages` configuration. 2025-09-09T05:10:13,112 !! 2025-09-09T05:10:13,112 ******************************************************************************** 2025-09-09T05:10:13,112 ############################ 2025-09-09T05:10:13,112 # Package would be ignored # 2025-09-09T05:10:13,113 ############################ 2025-09-09T05:10:13,113 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long' as an importable package[^1], 2025-09-09T05:10:13,113 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,113 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,113 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long' is explicitly added 2025-09-09T05:10:13,113 to the `packages` configuration field. 2025-09-09T05:10:13,113 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,113 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,113 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,114 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,114 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long' to be distributed and are 2025-09-09T05:10:13,114 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long' via 2025-09-09T05:10:13,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,114 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,114 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,114 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,115 even if it does not contain any `.py` files. 2025-09-09T05:10:13,115 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,115 directory, all directories are treated like packages. 2025-09-09T05:10:13,115 ******************************************************************************** 2025-09-09T05:10:13,115 !! 2025-09-09T05:10:13,115 check.warn(importable) 2025-09-09T05:10:13,115 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,115 !! 2025-09-09T05:10:13,116 ******************************************************************************** 2025-09-09T05:10:13,116 ############################ 2025-09-09T05:10:13,116 # Package would be ignored # 2025-09-09T05:10:13,116 ############################ 2025-09-09T05:10:13,116 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.init' as an importable package[^1], 2025-09-09T05:10:13,116 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,116 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,116 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.init' is explicitly added 2025-09-09T05:10:13,116 to the `packages` configuration field. 2025-09-09T05:10:13,116 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,117 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,117 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,117 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,117 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.init' to be distributed and are 2025-09-09T05:10:13,117 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.init' via 2025-09-09T05:10:13,117 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,117 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,118 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,118 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,118 even if it does not contain any `.py` files. 2025-09-09T05:10:13,118 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,118 directory, all directories are treated like packages. 2025-09-09T05:10:13,118 ******************************************************************************** 2025-09-09T05:10:13,118 !! 2025-09-09T05:10:13,119 check.warn(importable) 2025-09-09T05:10:13,119 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,119 !! 2025-09-09T05:10:13,119 ******************************************************************************** 2025-09-09T05:10:13,119 ############################ 2025-09-09T05:10:13,119 # Package would be ignored # 2025-09-09T05:10:13,119 ############################ 2025-09-09T05:10:13,119 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,119 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,119 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,120 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' is explicitly added 2025-09-09T05:10:13,120 to the `packages` configuration field. 2025-09-09T05:10:13,120 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,120 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,120 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,120 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,120 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' to be distributed and are 2025-09-09T05:10:13,121 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_long.swarm_0' via 2025-09-09T05:10:13,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,121 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,121 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,121 even if it does not contain any `.py` files. 2025-09-09T05:10:13,122 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,122 directory, all directories are treated like packages. 2025-09-09T05:10:13,122 ******************************************************************************** 2025-09-09T05:10:13,122 !! 2025-09-09T05:10:13,122 check.warn(importable) 2025-09-09T05:10:13,122 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,122 !! 2025-09-09T05:10:13,122 ******************************************************************************** 2025-09-09T05:10:13,122 ############################ 2025-09-09T05:10:13,122 # Package would be ignored # 2025-09-09T05:10:13,123 ############################ 2025-09-09T05:10:13,123 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints' as an importable package[^1], 2025-09-09T05:10:13,123 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,123 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,123 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints' is explicitly added 2025-09-09T05:10:13,123 to the `packages` configuration field. 2025-09-09T05:10:13,123 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,123 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,124 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,124 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,124 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints' to be distributed and are 2025-09-09T05:10:13,124 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints' via 2025-09-09T05:10:13,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,124 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,124 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,125 even if it does not contain any `.py` files. 2025-09-09T05:10:13,125 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,125 directory, all directories are treated like packages. 2025-09-09T05:10:13,125 ******************************************************************************** 2025-09-09T05:10:13,125 !! 2025-09-09T05:10:13,125 check.warn(importable) 2025-09-09T05:10:13,125 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,126 !! 2025-09-09T05:10:13,126 ******************************************************************************** 2025-09-09T05:10:13,126 ############################ 2025-09-09T05:10:13,126 # Package would be ignored # 2025-09-09T05:10:13,126 ############################ 2025-09-09T05:10:13,126 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,126 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,126 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,126 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' is explicitly added 2025-09-09T05:10:13,126 to the `packages` configuration field. 2025-09-09T05:10:13,127 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,127 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,127 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,127 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' to be distributed and are 2025-09-09T05:10:13,127 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.init' via 2025-09-09T05:10:13,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,127 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,128 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,128 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,128 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,128 even if it does not contain any `.py` files. 2025-09-09T05:10:13,128 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,128 directory, all directories are treated like packages. 2025-09-09T05:10:13,128 ******************************************************************************** 2025-09-09T05:10:13,129 !! 2025-09-09T05:10:13,129 check.warn(importable) 2025-09-09T05:10:13,129 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,129 !! 2025-09-09T05:10:13,129 ******************************************************************************** 2025-09-09T05:10:13,129 ############################ 2025-09-09T05:10:13,129 # Package would be ignored # 2025-09-09T05:10:13,129 ############################ 2025-09-09T05:10:13,129 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,129 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,130 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,130 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,130 to the `packages` configuration field. 2025-09-09T05:10:13,130 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,130 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,130 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,131 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,131 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_restraints.swarm_0' via 2025-09-09T05:10:13,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,131 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,131 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,131 even if it does not contain any `.py` files. 2025-09-09T05:10:13,132 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,132 directory, all directories are treated like packages. 2025-09-09T05:10:13,132 ******************************************************************************** 2025-09-09T05:10:13,132 !! 2025-09-09T05:10:13,132 check.warn(importable) 2025-09-09T05:10:13,132 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,132 !! 2025-09-09T05:10:13,132 ******************************************************************************** 2025-09-09T05:10:13,132 ############################ 2025-09-09T05:10:13,132 # Package would be ignored # 2025-09-09T05:10:13,133 ############################ 2025-09-09T05:10:13,133 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short' as an importable package[^1], 2025-09-09T05:10:13,133 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,133 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,133 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short' is explicitly added 2025-09-09T05:10:13,133 to the `packages` configuration field. 2025-09-09T05:10:13,133 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,133 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,133 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,134 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,134 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short' to be distributed and are 2025-09-09T05:10:13,134 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short' via 2025-09-09T05:10:13,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,134 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,134 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,135 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,135 even if it does not contain any `.py` files. 2025-09-09T05:10:13,135 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,135 directory, all directories are treated like packages. 2025-09-09T05:10:13,135 ******************************************************************************** 2025-09-09T05:10:13,135 !! 2025-09-09T05:10:13,135 check.warn(importable) 2025-09-09T05:10:13,136 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,136 !! 2025-09-09T05:10:13,136 ******************************************************************************** 2025-09-09T05:10:13,136 ############################ 2025-09-09T05:10:13,136 # Package would be ignored # 2025-09-09T05:10:13,136 ############################ 2025-09-09T05:10:13,136 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.init' as an importable package[^1], 2025-09-09T05:10:13,136 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,136 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,136 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.init' is explicitly added 2025-09-09T05:10:13,137 to the `packages` configuration field. 2025-09-09T05:10:13,137 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,137 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,137 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,137 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,137 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.init' to be distributed and are 2025-09-09T05:10:13,137 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.init' via 2025-09-09T05:10:13,137 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,138 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,138 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,138 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,138 even if it does not contain any `.py` files. 2025-09-09T05:10:13,138 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,138 directory, all directories are treated like packages. 2025-09-09T05:10:13,139 ******************************************************************************** 2025-09-09T05:10:13,139 !! 2025-09-09T05:10:13,139 check.warn(importable) 2025-09-09T05:10:13,139 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,139 !! 2025-09-09T05:10:13,139 ******************************************************************************** 2025-09-09T05:10:13,139 ############################ 2025-09-09T05:10:13,139 # Package would be ignored # 2025-09-09T05:10:13,139 ############################ 2025-09-09T05:10:13,139 Python recognizes 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,140 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,140 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,140 package, please make sure that 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' is explicitly added 2025-09-09T05:10:13,140 to the `packages` configuration field. 2025-09-09T05:10:13,140 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,140 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,140 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,141 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,141 If you don't want 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,141 already explicitly excluding 'lightdock.test.bin.golden_data.regression_pydock_short.swarm_0' via 2025-09-09T05:10:13,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,141 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,141 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,142 even if it does not contain any `.py` files. 2025-09-09T05:10:13,142 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,142 directory, all directories are treated like packages. 2025-09-09T05:10:13,142 ******************************************************************************** 2025-09-09T05:10:13,142 !! 2025-09-09T05:10:13,142 check.warn(importable) 2025-09-09T05:10:13,142 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup' is absent from the `packages` configuration. 2025-09-09T05:10:13,142 !! 2025-09-09T05:10:13,142 ******************************************************************************** 2025-09-09T05:10:13,143 ############################ 2025-09-09T05:10:13,143 # Package would be ignored # 2025-09-09T05:10:13,143 ############################ 2025-09-09T05:10:13,143 Python recognizes 'lightdock.test.bin.golden_data.regression_setup' as an importable package[^1], 2025-09-09T05:10:13,143 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,143 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,143 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup' is explicitly added 2025-09-09T05:10:13,143 to the `packages` configuration field. 2025-09-09T05:10:13,143 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,144 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,144 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,144 If you don't want 'lightdock.test.bin.golden_data.regression_setup' to be distributed and are 2025-09-09T05:10:13,144 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup' via 2025-09-09T05:10:13,144 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,144 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,144 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,144 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,145 even if it does not contain any `.py` files. 2025-09-09T05:10:13,145 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,145 directory, all directories are treated like packages. 2025-09-09T05:10:13,145 ******************************************************************************** 2025-09-09T05:10:13,145 !! 2025-09-09T05:10:13,145 check.warn(importable) 2025-09-09T05:10:13,146 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,146 !! 2025-09-09T05:10:13,146 ******************************************************************************** 2025-09-09T05:10:13,146 ############################ 2025-09-09T05:10:13,146 # Package would be ignored # 2025-09-09T05:10:13,146 ############################ 2025-09-09T05:10:13,146 Python recognizes 'lightdock.test.bin.golden_data.regression_setup.init' as an importable package[^1], 2025-09-09T05:10:13,146 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,146 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,147 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup.init' is explicitly added 2025-09-09T05:10:13,147 to the `packages` configuration field. 2025-09-09T05:10:13,147 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,147 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,147 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,147 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,147 If you don't want 'lightdock.test.bin.golden_data.regression_setup.init' to be distributed and are 2025-09-09T05:10:13,148 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup.init' via 2025-09-09T05:10:13,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,148 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,148 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,148 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,148 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,148 even if it does not contain any `.py` files. 2025-09-09T05:10:13,149 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,149 directory, all directories are treated like packages. 2025-09-09T05:10:13,149 ******************************************************************************** 2025-09-09T05:10:13,149 !! 2025-09-09T05:10:13,149 check.warn(importable) 2025-09-09T05:10:13,149 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane' is absent from the `packages` configuration. 2025-09-09T05:10:13,149 !! 2025-09-09T05:10:13,149 ******************************************************************************** 2025-09-09T05:10:13,149 ############################ 2025-09-09T05:10:13,149 # Package would be ignored # 2025-09-09T05:10:13,150 ############################ 2025-09-09T05:10:13,150 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane' as an importable package[^1], 2025-09-09T05:10:13,150 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,150 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,150 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane' is explicitly added 2025-09-09T05:10:13,150 to the `packages` configuration field. 2025-09-09T05:10:13,150 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,150 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,150 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,151 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,151 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane' to be distributed and are 2025-09-09T05:10:13,151 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane' via 2025-09-09T05:10:13,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,151 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,151 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,152 even if it does not contain any `.py` files. 2025-09-09T05:10:13,152 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,152 directory, all directories are treated like packages. 2025-09-09T05:10:13,152 ******************************************************************************** 2025-09-09T05:10:13,152 !! 2025-09-09T05:10:13,152 check.warn(importable) 2025-09-09T05:10:13,152 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,153 !! 2025-09-09T05:10:13,153 ******************************************************************************** 2025-09-09T05:10:13,153 ############################ 2025-09-09T05:10:13,153 # Package would be ignored # 2025-09-09T05:10:13,153 ############################ 2025-09-09T05:10:13,153 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane.init' as an importable package[^1], 2025-09-09T05:10:13,153 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,153 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,153 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane.init' is explicitly added 2025-09-09T05:10:13,153 to the `packages` configuration field. 2025-09-09T05:10:13,154 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,154 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,154 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,154 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane.init' to be distributed and are 2025-09-09T05:10:13,154 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane.init' via 2025-09-09T05:10:13,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,155 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,155 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,155 even if it does not contain any `.py` files. 2025-09-09T05:10:13,155 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,155 directory, all directories are treated like packages. 2025-09-09T05:10:13,155 ******************************************************************************** 2025-09-09T05:10:13,156 !! 2025-09-09T05:10:13,156 check.warn(importable) 2025-09-09T05:10:13,156 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,156 !! 2025-09-09T05:10:13,156 ******************************************************************************** 2025-09-09T05:10:13,156 ############################ 2025-09-09T05:10:13,156 # Package would be ignored # 2025-09-09T05:10:13,156 ############################ 2025-09-09T05:10:13,156 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' as an importable package[^1], 2025-09-09T05:10:13,156 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,157 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,157 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' is explicitly added 2025-09-09T05:10:13,157 to the `packages` configuration field. 2025-09-09T05:10:13,157 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,157 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,157 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,157 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,157 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,158 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' to be distributed and are 2025-09-09T05:10:13,158 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints' via 2025-09-09T05:10:13,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,158 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,158 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,158 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,158 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,159 even if it does not contain any `.py` files. 2025-09-09T05:10:13,159 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,159 directory, all directories are treated like packages. 2025-09-09T05:10:13,159 ******************************************************************************** 2025-09-09T05:10:13,159 !! 2025-09-09T05:10:13,159 check.warn(importable) 2025-09-09T05:10:13,159 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,159 !! 2025-09-09T05:10:13,159 ******************************************************************************** 2025-09-09T05:10:13,160 ############################ 2025-09-09T05:10:13,160 # Package would be ignored # 2025-09-09T05:10:13,160 ############################ 2025-09-09T05:10:13,160 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,160 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,160 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,160 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' is explicitly added 2025-09-09T05:10:13,160 to the `packages` configuration field. 2025-09-09T05:10:13,160 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,161 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,161 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,161 If you don't want 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' to be distributed and are 2025-09-09T05:10:13,161 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_membrane_restraints.init' via 2025-09-09T05:10:13,161 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,161 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,161 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,162 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,162 even if it does not contain any `.py` files. 2025-09-09T05:10:13,162 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,162 directory, all directories are treated like packages. 2025-09-09T05:10:13,162 ******************************************************************************** 2025-09-09T05:10:13,163 !! 2025-09-09T05:10:13,163 check.warn(importable) 2025-09-09T05:10:13,163 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst' is absent from the `packages` configuration. 2025-09-09T05:10:13,163 !! 2025-09-09T05:10:13,163 ******************************************************************************** 2025-09-09T05:10:13,163 ############################ 2025-09-09T05:10:13,163 # Package would be ignored # 2025-09-09T05:10:13,163 ############################ 2025-09-09T05:10:13,163 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst' as an importable package[^1], 2025-09-09T05:10:13,163 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,164 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,164 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst' is explicitly added 2025-09-09T05:10:13,164 to the `packages` configuration field. 2025-09-09T05:10:13,164 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,164 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,164 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,164 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,165 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst' to be distributed and are 2025-09-09T05:10:13,165 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst' via 2025-09-09T05:10:13,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,165 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,165 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,166 even if it does not contain any `.py` files. 2025-09-09T05:10:13,166 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,166 directory, all directories are treated like packages. 2025-09-09T05:10:13,166 ******************************************************************************** 2025-09-09T05:10:13,166 !! 2025-09-09T05:10:13,166 check.warn(importable) 2025-09-09T05:10:13,166 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_setup_rst.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,166 !! 2025-09-09T05:10:13,166 ******************************************************************************** 2025-09-09T05:10:13,166 ############################ 2025-09-09T05:10:13,167 # Package would be ignored # 2025-09-09T05:10:13,167 ############################ 2025-09-09T05:10:13,167 Python recognizes 'lightdock.test.bin.golden_data.regression_setup_rst.init' as an importable package[^1], 2025-09-09T05:10:13,167 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,167 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,167 package, please make sure that 'lightdock.test.bin.golden_data.regression_setup_rst.init' is explicitly added 2025-09-09T05:10:13,167 to the `packages` configuration field. 2025-09-09T05:10:13,167 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,167 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,168 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,168 If you don't want 'lightdock.test.bin.golden_data.regression_setup_rst.init' to be distributed and are 2025-09-09T05:10:13,168 already explicitly excluding 'lightdock.test.bin.golden_data.regression_setup_rst.init' via 2025-09-09T05:10:13,168 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,168 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,168 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,169 even if it does not contain any `.py` files. 2025-09-09T05:10:13,169 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,169 directory, all directories are treated like packages. 2025-09-09T05:10:13,169 ******************************************************************************** 2025-09-09T05:10:13,169 !! 2025-09-09T05:10:13,169 check.warn(importable) 2025-09-09T05:10:13,169 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long' is absent from the `packages` configuration. 2025-09-09T05:10:13,170 !! 2025-09-09T05:10:13,170 ******************************************************************************** 2025-09-09T05:10:13,170 ############################ 2025-09-09T05:10:13,170 # Package would be ignored # 2025-09-09T05:10:13,170 ############################ 2025-09-09T05:10:13,170 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long' as an importable package[^1], 2025-09-09T05:10:13,170 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,170 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,170 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long' is explicitly added 2025-09-09T05:10:13,170 to the `packages` configuration field. 2025-09-09T05:10:13,171 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,171 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,171 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,171 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long' to be distributed and are 2025-09-09T05:10:13,171 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long' via 2025-09-09T05:10:13,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,172 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,172 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,172 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,172 even if it does not contain any `.py` files. 2025-09-09T05:10:13,172 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,173 directory, all directories are treated like packages. 2025-09-09T05:10:13,173 ******************************************************************************** 2025-09-09T05:10:13,173 !! 2025-09-09T05:10:13,173 check.warn(importable) 2025-09-09T05:10:13,173 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,173 !! 2025-09-09T05:10:13,173 ******************************************************************************** 2025-09-09T05:10:13,173 ############################ 2025-09-09T05:10:13,173 # Package would be ignored # 2025-09-09T05:10:13,173 ############################ 2025-09-09T05:10:13,174 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.init' as an importable package[^1], 2025-09-09T05:10:13,174 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,174 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,174 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.init' is explicitly added 2025-09-09T05:10:13,174 to the `packages` configuration field. 2025-09-09T05:10:13,174 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,174 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,174 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,174 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,175 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,175 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.init' to be distributed and are 2025-09-09T05:10:13,175 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.init' via 2025-09-09T05:10:13,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,175 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,175 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,175 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,176 even if it does not contain any `.py` files. 2025-09-09T05:10:13,176 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,176 directory, all directories are treated like packages. 2025-09-09T05:10:13,176 ******************************************************************************** 2025-09-09T05:10:13,176 !! 2025-09-09T05:10:13,176 check.warn(importable) 2025-09-09T05:10:13,176 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,176 !! 2025-09-09T05:10:13,177 ******************************************************************************** 2025-09-09T05:10:13,177 ############################ 2025-09-09T05:10:13,177 # Package would be ignored # 2025-09-09T05:10:13,177 ############################ 2025-09-09T05:10:13,177 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,177 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,177 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,177 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' is explicitly added 2025-09-09T05:10:13,177 to the `packages` configuration field. 2025-09-09T05:10:13,177 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,178 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,178 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,178 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' to be distributed and are 2025-09-09T05:10:13,178 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_long.swarm_0' via 2025-09-09T05:10:13,178 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,178 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,178 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,179 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,179 even if it does not contain any `.py` files. 2025-09-09T05:10:13,179 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,179 directory, all directories are treated like packages. 2025-09-09T05:10:13,179 ******************************************************************************** 2025-09-09T05:10:13,180 !! 2025-09-09T05:10:13,180 check.warn(importable) 2025-09-09T05:10:13,180 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,180 !! 2025-09-09T05:10:13,180 ******************************************************************************** 2025-09-09T05:10:13,180 ############################ 2025-09-09T05:10:13,180 # Package would be ignored # 2025-09-09T05:10:13,180 ############################ 2025-09-09T05:10:13,180 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints' as an importable package[^1], 2025-09-09T05:10:13,180 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,181 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,181 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints' is explicitly added 2025-09-09T05:10:13,181 to the `packages` configuration field. 2025-09-09T05:10:13,181 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,181 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,181 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,181 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,182 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints' to be distributed and are 2025-09-09T05:10:13,182 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints' via 2025-09-09T05:10:13,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,182 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,182 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,182 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,183 even if it does not contain any `.py` files. 2025-09-09T05:10:13,183 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,183 directory, all directories are treated like packages. 2025-09-09T05:10:13,183 ******************************************************************************** 2025-09-09T05:10:13,183 !! 2025-09-09T05:10:13,183 check.warn(importable) 2025-09-09T05:10:13,183 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,183 !! 2025-09-09T05:10:13,183 ******************************************************************************** 2025-09-09T05:10:13,184 ############################ 2025-09-09T05:10:13,184 # Package would be ignored # 2025-09-09T05:10:13,184 ############################ 2025-09-09T05:10:13,184 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' as an importable package[^1], 2025-09-09T05:10:13,184 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,184 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,184 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' is explicitly added 2025-09-09T05:10:13,184 to the `packages` configuration field. 2025-09-09T05:10:13,184 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,184 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,185 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,185 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,185 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' to be distributed and are 2025-09-09T05:10:13,185 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.init' via 2025-09-09T05:10:13,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,185 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,186 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,186 even if it does not contain any `.py` files. 2025-09-09T05:10:13,186 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,186 directory, all directories are treated like packages. 2025-09-09T05:10:13,186 ******************************************************************************** 2025-09-09T05:10:13,186 !! 2025-09-09T05:10:13,187 check.warn(importable) 2025-09-09T05:10:13,187 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,187 !! 2025-09-09T05:10:13,187 ******************************************************************************** 2025-09-09T05:10:13,187 ############################ 2025-09-09T05:10:13,187 # Package would be ignored # 2025-09-09T05:10:13,187 ############################ 2025-09-09T05:10:13,187 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,187 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,187 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,188 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,188 to the `packages` configuration field. 2025-09-09T05:10:13,188 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,188 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,188 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,188 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,189 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_restraints.swarm_0' via 2025-09-09T05:10:13,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,189 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,189 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,189 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,189 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,189 even if it does not contain any `.py` files. 2025-09-09T05:10:13,190 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,190 directory, all directories are treated like packages. 2025-09-09T05:10:13,190 ******************************************************************************** 2025-09-09T05:10:13,190 !! 2025-09-09T05:10:13,190 check.warn(importable) 2025-09-09T05:10:13,190 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short' is absent from the `packages` configuration. 2025-09-09T05:10:13,190 !! 2025-09-09T05:10:13,190 ******************************************************************************** 2025-09-09T05:10:13,190 ############################ 2025-09-09T05:10:13,190 # Package would be ignored # 2025-09-09T05:10:13,191 ############################ 2025-09-09T05:10:13,191 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short' as an importable package[^1], 2025-09-09T05:10:13,191 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,191 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,191 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short' is explicitly added 2025-09-09T05:10:13,191 to the `packages` configuration field. 2025-09-09T05:10:13,191 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,191 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,191 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,192 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short' to be distributed and are 2025-09-09T05:10:13,192 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short' via 2025-09-09T05:10:13,192 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,192 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,192 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,192 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,193 even if it does not contain any `.py` files. 2025-09-09T05:10:13,193 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,193 directory, all directories are treated like packages. 2025-09-09T05:10:13,193 ******************************************************************************** 2025-09-09T05:10:13,193 !! 2025-09-09T05:10:13,193 check.warn(importable) 2025-09-09T05:10:13,193 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,193 !! 2025-09-09T05:10:13,194 ******************************************************************************** 2025-09-09T05:10:13,194 ############################ 2025-09-09T05:10:13,194 # Package would be ignored # 2025-09-09T05:10:13,194 ############################ 2025-09-09T05:10:13,194 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.init' as an importable package[^1], 2025-09-09T05:10:13,194 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,194 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,194 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.init' is explicitly added 2025-09-09T05:10:13,194 to the `packages` configuration field. 2025-09-09T05:10:13,194 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,195 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,195 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,195 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,195 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.init' to be distributed and are 2025-09-09T05:10:13,195 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.init' via 2025-09-09T05:10:13,195 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,195 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,196 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,196 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,196 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,196 even if it does not contain any `.py` files. 2025-09-09T05:10:13,196 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,196 directory, all directories are treated like packages. 2025-09-09T05:10:13,196 ******************************************************************************** 2025-09-09T05:10:13,197 !! 2025-09-09T05:10:13,197 check.warn(importable) 2025-09-09T05:10:13,197 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,197 !! 2025-09-09T05:10:13,197 ******************************************************************************** 2025-09-09T05:10:13,197 ############################ 2025-09-09T05:10:13,197 # Package would be ignored # 2025-09-09T05:10:13,197 ############################ 2025-09-09T05:10:13,197 Python recognizes 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,197 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,198 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,198 package, please make sure that 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' is explicitly added 2025-09-09T05:10:13,198 to the `packages` configuration field. 2025-09-09T05:10:13,198 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,198 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,198 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,199 If you don't want 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' to be distributed and are 2025-09-09T05:10:13,199 already explicitly excluding 'lightdock.test.bin.golden_data.regression_tobi_short.swarm_0' via 2025-09-09T05:10:13,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,199 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,199 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,199 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,199 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,200 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,200 even if it does not contain any `.py` files. 2025-09-09T05:10:13,200 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,200 directory, all directories are treated like packages. 2025-09-09T05:10:13,200 ******************************************************************************** 2025-09-09T05:10:13,200 !! 2025-09-09T05:10:13,200 check.warn(importable) 2025-09-09T05:10:13,200 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,200 !! 2025-09-09T05:10:13,201 ******************************************************************************** 2025-09-09T05:10:13,201 ############################ 2025-09-09T05:10:13,201 # Package would be ignored # 2025-09-09T05:10:13,201 ############################ 2025-09-09T05:10:13,201 Python recognizes 'lightdock.test.bin.post.golden_data' as an importable package[^1], 2025-09-09T05:10:13,201 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,201 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,201 package, please make sure that 'lightdock.test.bin.post.golden_data' is explicitly added 2025-09-09T05:10:13,201 to the `packages` configuration field. 2025-09-09T05:10:13,201 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,201 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,202 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,202 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,202 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,202 If you don't want 'lightdock.test.bin.post.golden_data' to be distributed and are 2025-09-09T05:10:13,202 already explicitly excluding 'lightdock.test.bin.post.golden_data' via 2025-09-09T05:10:13,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,202 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,203 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,203 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,203 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,203 even if it does not contain any `.py` files. 2025-09-09T05:10:13,203 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,203 directory, all directories are treated like packages. 2025-09-09T05:10:13,203 ******************************************************************************** 2025-09-09T05:10:13,203 !! 2025-09-09T05:10:13,204 check.warn(importable) 2025-09-09T05:10:13,204 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.cluster_bsas' is absent from the `packages` configuration. 2025-09-09T05:10:13,204 !! 2025-09-09T05:10:13,204 ******************************************************************************** 2025-09-09T05:10:13,204 ############################ 2025-09-09T05:10:13,204 # Package would be ignored # 2025-09-09T05:10:13,204 ############################ 2025-09-09T05:10:13,204 Python recognizes 'lightdock.test.bin.post.golden_data.cluster_bsas' as an importable package[^1], 2025-09-09T05:10:13,204 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,204 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,204 package, please make sure that 'lightdock.test.bin.post.golden_data.cluster_bsas' is explicitly added 2025-09-09T05:10:13,205 to the `packages` configuration field. 2025-09-09T05:10:13,205 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,205 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,205 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,205 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,205 If you don't want 'lightdock.test.bin.post.golden_data.cluster_bsas' to be distributed and are 2025-09-09T05:10:13,205 already explicitly excluding 'lightdock.test.bin.post.golden_data.cluster_bsas' via 2025-09-09T05:10:13,206 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,206 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,206 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,206 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,206 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,206 even if it does not contain any `.py` files. 2025-09-09T05:10:13,206 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,207 directory, all directories are treated like packages. 2025-09-09T05:10:13,207 ******************************************************************************** 2025-09-09T05:10:13,207 !! 2025-09-09T05:10:13,207 check.warn(importable) 2025-09-09T05:10:13,207 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.create_membrane' is absent from the `packages` configuration. 2025-09-09T05:10:13,207 !! 2025-09-09T05:10:13,207 ******************************************************************************** 2025-09-09T05:10:13,207 ############################ 2025-09-09T05:10:13,207 # Package would be ignored # 2025-09-09T05:10:13,207 ############################ 2025-09-09T05:10:13,208 Python recognizes 'lightdock.test.bin.post.golden_data.create_membrane' as an importable package[^1], 2025-09-09T05:10:13,208 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,208 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,208 package, please make sure that 'lightdock.test.bin.post.golden_data.create_membrane' is explicitly added 2025-09-09T05:10:13,208 to the `packages` configuration field. 2025-09-09T05:10:13,208 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,208 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,208 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,208 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,209 If you don't want 'lightdock.test.bin.post.golden_data.create_membrane' to be distributed and are 2025-09-09T05:10:13,209 already explicitly excluding 'lightdock.test.bin.post.golden_data.create_membrane' via 2025-09-09T05:10:13,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,209 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,209 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,210 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,210 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,210 even if it does not contain any `.py` files. 2025-09-09T05:10:13,210 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,210 directory, all directories are treated like packages. 2025-09-09T05:10:13,210 ******************************************************************************** 2025-09-09T05:10:13,210 !! 2025-09-09T05:10:13,210 check.warn(importable) 2025-09-09T05:10:13,210 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints' is absent from the `packages` configuration. 2025-09-09T05:10:13,211 !! 2025-09-09T05:10:13,211 ******************************************************************************** 2025-09-09T05:10:13,211 ############################ 2025-09-09T05:10:13,211 # Package would be ignored # 2025-09-09T05:10:13,211 ############################ 2025-09-09T05:10:13,211 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints' as an importable package[^1], 2025-09-09T05:10:13,211 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,211 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,211 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints' is explicitly added 2025-09-09T05:10:13,211 to the `packages` configuration field. 2025-09-09T05:10:13,212 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,212 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,212 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,212 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints' to be distributed and are 2025-09-09T05:10:13,212 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints' via 2025-09-09T05:10:13,212 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,213 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,213 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,213 even if it does not contain any `.py` files. 2025-09-09T05:10:13,213 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,213 directory, all directories are treated like packages. 2025-09-09T05:10:13,213 ******************************************************************************** 2025-09-09T05:10:13,214 !! 2025-09-09T05:10:13,214 check.warn(importable) 2025-09-09T05:10:13,214 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is absent from the `packages` configuration. 2025-09-09T05:10:13,214 !! 2025-09-09T05:10:13,214 ******************************************************************************** 2025-09-09T05:10:13,214 ############################ 2025-09-09T05:10:13,214 # Package would be ignored # 2025-09-09T05:10:13,214 ############################ 2025-09-09T05:10:13,214 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' as an importable package[^1], 2025-09-09T05:10:13,214 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,215 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,215 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' is explicitly added 2025-09-09T05:10:13,215 to the `packages` configuration field. 2025-09-09T05:10:13,215 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,215 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,215 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,215 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,215 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,216 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' to be distributed and are 2025-09-09T05:10:13,216 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.filtered' via 2025-09-09T05:10:13,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,216 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,216 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,216 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,217 even if it does not contain any `.py` files. 2025-09-09T05:10:13,217 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,217 directory, all directories are treated like packages. 2025-09-09T05:10:13,217 ******************************************************************************** 2025-09-09T05:10:13,217 !! 2025-09-09T05:10:13,217 check.warn(importable) 2025-09-09T05:10:13,217 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,217 !! 2025-09-09T05:10:13,217 ******************************************************************************** 2025-09-09T05:10:13,217 ############################ 2025-09-09T05:10:13,217 # Package would be ignored # 2025-09-09T05:10:13,218 ############################ 2025-09-09T05:10:13,218 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,218 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,218 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,218 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' is explicitly added 2025-09-09T05:10:13,218 to the `packages` configuration field. 2025-09-09T05:10:13,218 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,218 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,218 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,219 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,219 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' to be distributed and are 2025-09-09T05:10:13,219 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_0' via 2025-09-09T05:10:13,219 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,219 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,219 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,219 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,220 even if it does not contain any `.py` files. 2025-09-09T05:10:13,220 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,220 directory, all directories are treated like packages. 2025-09-09T05:10:13,220 ******************************************************************************** 2025-09-09T05:10:13,220 !! 2025-09-09T05:10:13,220 check.warn(importable) 2025-09-09T05:10:13,220 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is absent from the `packages` configuration. 2025-09-09T05:10:13,220 !! 2025-09-09T05:10:13,221 ******************************************************************************** 2025-09-09T05:10:13,221 ############################ 2025-09-09T05:10:13,221 # Package would be ignored # 2025-09-09T05:10:13,221 ############################ 2025-09-09T05:10:13,221 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' as an importable package[^1], 2025-09-09T05:10:13,221 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,221 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,221 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' is explicitly added 2025-09-09T05:10:13,221 to the `packages` configuration field. 2025-09-09T05:10:13,222 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,222 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,222 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,222 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,222 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' to be distributed and are 2025-09-09T05:10:13,222 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_1' via 2025-09-09T05:10:13,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,223 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,223 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,223 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,223 even if it does not contain any `.py` files. 2025-09-09T05:10:13,223 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,223 directory, all directories are treated like packages. 2025-09-09T05:10:13,224 ******************************************************************************** 2025-09-09T05:10:13,224 !! 2025-09-09T05:10:13,224 check.warn(importable) 2025-09-09T05:10:13,224 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is absent from the `packages` configuration. 2025-09-09T05:10:13,224 !! 2025-09-09T05:10:13,224 ******************************************************************************** 2025-09-09T05:10:13,224 ############################ 2025-09-09T05:10:13,224 # Package would be ignored # 2025-09-09T05:10:13,224 ############################ 2025-09-09T05:10:13,224 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' as an importable package[^1], 2025-09-09T05:10:13,225 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,225 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,225 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' is explicitly added 2025-09-09T05:10:13,225 to the `packages` configuration field. 2025-09-09T05:10:13,225 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,225 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,225 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,225 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,226 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' to be distributed and are 2025-09-09T05:10:13,226 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_2' via 2025-09-09T05:10:13,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,226 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,226 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,226 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,227 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,227 even if it does not contain any `.py` files. 2025-09-09T05:10:13,227 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,227 directory, all directories are treated like packages. 2025-09-09T05:10:13,227 ******************************************************************************** 2025-09-09T05:10:13,227 !! 2025-09-09T05:10:13,227 check.warn(importable) 2025-09-09T05:10:13,227 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is absent from the `packages` configuration. 2025-09-09T05:10:13,227 !! 2025-09-09T05:10:13,227 ******************************************************************************** 2025-09-09T05:10:13,228 ############################ 2025-09-09T05:10:13,228 # Package would be ignored # 2025-09-09T05:10:13,228 ############################ 2025-09-09T05:10:13,228 Python recognizes 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' as an importable package[^1], 2025-09-09T05:10:13,228 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,228 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,228 package, please make sure that 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' is explicitly added 2025-09-09T05:10:13,228 to the `packages` configuration field. 2025-09-09T05:10:13,228 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,228 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,228 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,229 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,229 If you don't want 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' to be distributed and are 2025-09-09T05:10:13,229 already explicitly excluding 'lightdock.test.bin.post.golden_data.filter_restraints.swarm_3' via 2025-09-09T05:10:13,229 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,229 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,229 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,230 even if it does not contain any `.py` files. 2025-09-09T05:10:13,230 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,230 directory, all directories are treated like packages. 2025-09-09T05:10:13,230 ******************************************************************************** 2025-09-09T05:10:13,230 !! 2025-09-09T05:10:13,230 check.warn(importable) 2025-09-09T05:10:13,231 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_conformations' is absent from the `packages` configuration. 2025-09-09T05:10:13,231 !! 2025-09-09T05:10:13,231 ******************************************************************************** 2025-09-09T05:10:13,231 ############################ 2025-09-09T05:10:13,231 # Package would be ignored # 2025-09-09T05:10:13,231 ############################ 2025-09-09T05:10:13,231 Python recognizes 'lightdock.test.bin.post.golden_data.generate_conformations' as an importable package[^1], 2025-09-09T05:10:13,231 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,231 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,231 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_conformations' is explicitly added 2025-09-09T05:10:13,232 to the `packages` configuration field. 2025-09-09T05:10:13,232 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,232 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,232 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,232 If you don't want 'lightdock.test.bin.post.golden_data.generate_conformations' to be distributed and are 2025-09-09T05:10:13,232 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_conformations' via 2025-09-09T05:10:13,232 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,233 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,233 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,233 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,233 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,233 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,233 even if it does not contain any `.py` files. 2025-09-09T05:10:13,233 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,234 directory, all directories are treated like packages. 2025-09-09T05:10:13,234 ******************************************************************************** 2025-09-09T05:10:13,234 !! 2025-09-09T05:10:13,234 check.warn(importable) 2025-09-09T05:10:13,234 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is absent from the `packages` configuration. 2025-09-09T05:10:13,234 !! 2025-09-09T05:10:13,234 ******************************************************************************** 2025-09-09T05:10:13,234 ############################ 2025-09-09T05:10:13,234 # Package would be ignored # 2025-09-09T05:10:13,234 ############################ 2025-09-09T05:10:13,235 Python recognizes 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' as an importable package[^1], 2025-09-09T05:10:13,235 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,235 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,235 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' is explicitly added 2025-09-09T05:10:13,235 to the `packages` configuration field. 2025-09-09T05:10:13,235 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,235 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,235 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,235 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,236 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,236 If you don't want 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' to be distributed and are 2025-09-09T05:10:13,236 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_glowworm_positions' via 2025-09-09T05:10:13,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,236 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,236 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,237 even if it does not contain any `.py` files. 2025-09-09T05:10:13,237 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,237 directory, all directories are treated like packages. 2025-09-09T05:10:13,237 ******************************************************************************** 2025-09-09T05:10:13,237 !! 2025-09-09T05:10:13,237 check.warn(importable) 2025-09-09T05:10:13,237 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_top' is absent from the `packages` configuration. 2025-09-09T05:10:13,237 !! 2025-09-09T05:10:13,238 ******************************************************************************** 2025-09-09T05:10:13,238 ############################ 2025-09-09T05:10:13,238 # Package would be ignored # 2025-09-09T05:10:13,238 ############################ 2025-09-09T05:10:13,238 Python recognizes 'lightdock.test.bin.post.golden_data.generate_top' as an importable package[^1], 2025-09-09T05:10:13,238 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,238 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,238 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_top' is explicitly added 2025-09-09T05:10:13,238 to the `packages` configuration field. 2025-09-09T05:10:13,238 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,239 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,239 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,239 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,239 If you don't want 'lightdock.test.bin.post.golden_data.generate_top' to be distributed and are 2025-09-09T05:10:13,239 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_top' via 2025-09-09T05:10:13,239 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,239 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,239 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,240 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,240 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,240 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,240 even if it does not contain any `.py` files. 2025-09-09T05:10:13,240 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,240 directory, all directories are treated like packages. 2025-09-09T05:10:13,240 ******************************************************************************** 2025-09-09T05:10:13,241 !! 2025-09-09T05:10:13,241 check.warn(importable) 2025-09-09T05:10:13,241 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory' is absent from the `packages` configuration. 2025-09-09T05:10:13,241 !! 2025-09-09T05:10:13,241 ******************************************************************************** 2025-09-09T05:10:13,241 ############################ 2025-09-09T05:10:13,241 # Package would be ignored # 2025-09-09T05:10:13,241 ############################ 2025-09-09T05:10:13,241 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory' as an importable package[^1], 2025-09-09T05:10:13,241 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,241 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,242 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory' is explicitly added 2025-09-09T05:10:13,242 to the `packages` configuration field. 2025-09-09T05:10:13,242 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,242 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,242 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,242 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,242 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory' to be distributed and are 2025-09-09T05:10:13,243 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory' via 2025-09-09T05:10:13,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,243 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,243 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,243 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,243 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,243 even if it does not contain any `.py` files. 2025-09-09T05:10:13,243 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,244 directory, all directories are treated like packages. 2025-09-09T05:10:13,244 ******************************************************************************** 2025-09-09T05:10:13,244 !! 2025-09-09T05:10:13,244 check.warn(importable) 2025-09-09T05:10:13,244 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,244 !! 2025-09-09T05:10:13,244 ******************************************************************************** 2025-09-09T05:10:13,244 ############################ 2025-09-09T05:10:13,244 # Package would be ignored # 2025-09-09T05:10:13,244 ############################ 2025-09-09T05:10:13,245 Python recognizes 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,245 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,245 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,245 package, please make sure that 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' is explicitly added 2025-09-09T05:10:13,245 to the `packages` configuration field. 2025-09-09T05:10:13,245 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,245 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,245 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,246 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,246 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,246 If you don't want 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' to be distributed and are 2025-09-09T05:10:13,246 already explicitly excluding 'lightdock.test.bin.post.golden_data.generate_trajectory.swarm_0' via 2025-09-09T05:10:13,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,246 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,246 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,246 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,247 even if it does not contain any `.py` files. 2025-09-09T05:10:13,247 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,247 directory, all directories are treated like packages. 2025-09-09T05:10:13,247 ******************************************************************************** 2025-09-09T05:10:13,247 !! 2025-09-09T05:10:13,247 check.warn(importable) 2025-09-09T05:10:13,247 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,248 !! 2025-09-09T05:10:13,248 ******************************************************************************** 2025-09-09T05:10:13,248 ############################ 2025-09-09T05:10:13,248 # Package would be ignored # 2025-09-09T05:10:13,248 ############################ 2025-09-09T05:10:13,248 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' as an importable package[^1], 2025-09-09T05:10:13,248 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,248 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,248 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' is explicitly added 2025-09-09T05:10:13,249 to the `packages` configuration field. 2025-09-09T05:10:13,249 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,249 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,249 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,249 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,249 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,249 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' to be distributed and are 2025-09-09T05:10:13,249 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.new.init' via 2025-09-09T05:10:13,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,250 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,250 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,250 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,250 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,250 even if it does not contain any `.py` files. 2025-09-09T05:10:13,251 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,251 directory, all directories are treated like packages. 2025-09-09T05:10:13,251 ******************************************************************************** 2025-09-09T05:10:13,251 !! 2025-09-09T05:10:13,251 check.warn(importable) 2025-09-09T05:10:13,251 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is absent from the `packages` configuration. 2025-09-09T05:10:13,251 !! 2025-09-09T05:10:13,251 ******************************************************************************** 2025-09-09T05:10:13,251 ############################ 2025-09-09T05:10:13,251 # Package would be ignored # 2025-09-09T05:10:13,252 ############################ 2025-09-09T05:10:13,252 Python recognizes 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' as an importable package[^1], 2025-09-09T05:10:13,252 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,252 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,252 package, please make sure that 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' is explicitly added 2025-09-09T05:10:13,252 to the `packages` configuration field. 2025-09-09T05:10:13,252 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,252 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,252 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,253 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,253 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,253 If you don't want 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' to be distributed and are 2025-09-09T05:10:13,253 already explicitly excluding 'lightdock.test.bin.post.golden_data.prepare_new_simulation.swarm_0' via 2025-09-09T05:10:13,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,253 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,253 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,254 even if it does not contain any `.py` files. 2025-09-09T05:10:13,254 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,254 directory, all directories are treated like packages. 2025-09-09T05:10:13,254 ******************************************************************************** 2025-09-09T05:10:13,254 !! 2025-09-09T05:10:13,254 check.warn(importable) 2025-09-09T05:10:13,254 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.bin.post.golden_data.reference_points' is absent from the `packages` configuration. 2025-09-09T05:10:13,255 !! 2025-09-09T05:10:13,255 ******************************************************************************** 2025-09-09T05:10:13,255 ############################ 2025-09-09T05:10:13,255 # Package would be ignored # 2025-09-09T05:10:13,255 ############################ 2025-09-09T05:10:13,255 Python recognizes 'lightdock.test.bin.post.golden_data.reference_points' as an importable package[^1], 2025-09-09T05:10:13,255 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,255 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,255 package, please make sure that 'lightdock.test.bin.post.golden_data.reference_points' is explicitly added 2025-09-09T05:10:13,255 to the `packages` configuration field. 2025-09-09T05:10:13,256 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,256 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,256 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,256 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,256 If you don't want 'lightdock.test.bin.post.golden_data.reference_points' to be distributed and are 2025-09-09T05:10:13,256 already explicitly excluding 'lightdock.test.bin.post.golden_data.reference_points' via 2025-09-09T05:10:13,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,257 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,257 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,257 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,257 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,257 even if it does not contain any `.py` files. 2025-09-09T05:10:13,257 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,257 directory, all directories are treated like packages. 2025-09-09T05:10:13,258 ******************************************************************************** 2025-09-09T05:10:13,258 !! 2025-09-09T05:10:13,258 check.warn(importable) 2025-09-09T05:10:13,258 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,258 !! 2025-09-09T05:10:13,258 ******************************************************************************** 2025-09-09T05:10:13,258 ############################ 2025-09-09T05:10:13,258 # Package would be ignored # 2025-09-09T05:10:13,258 ############################ 2025-09-09T05:10:13,259 Python recognizes 'lightdock.test.gso.golden_data' as an importable package[^1], 2025-09-09T05:10:13,259 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,259 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,259 package, please make sure that 'lightdock.test.gso.golden_data' is explicitly added 2025-09-09T05:10:13,259 to the `packages` configuration field. 2025-09-09T05:10:13,259 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,259 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,259 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,259 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,260 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,260 If you don't want 'lightdock.test.gso.golden_data' to be distributed and are 2025-09-09T05:10:13,260 already explicitly excluding 'lightdock.test.gso.golden_data' via 2025-09-09T05:10:13,260 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,260 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,260 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,260 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,261 even if it does not contain any `.py` files. 2025-09-09T05:10:13,261 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,261 directory, all directories are treated like packages. 2025-09-09T05:10:13,261 ******************************************************************************** 2025-09-09T05:10:13,261 !! 2025-09-09T05:10:13,261 check.warn(importable) 2025-09-09T05:10:13,261 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.golden_data.parameters' is absent from the `packages` configuration. 2025-09-09T05:10:13,261 !! 2025-09-09T05:10:13,262 ******************************************************************************** 2025-09-09T05:10:13,262 ############################ 2025-09-09T05:10:13,262 # Package would be ignored # 2025-09-09T05:10:13,262 ############################ 2025-09-09T05:10:13,262 Python recognizes 'lightdock.test.gso.golden_data.parameters' as an importable package[^1], 2025-09-09T05:10:13,262 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,262 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,262 package, please make sure that 'lightdock.test.gso.golden_data.parameters' is explicitly added 2025-09-09T05:10:13,262 to the `packages` configuration field. 2025-09-09T05:10:13,263 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,263 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,263 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,263 If you don't want 'lightdock.test.gso.golden_data.parameters' to be distributed and are 2025-09-09T05:10:13,263 already explicitly excluding 'lightdock.test.gso.golden_data.parameters' via 2025-09-09T05:10:13,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,264 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,264 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,264 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,264 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,264 even if it does not contain any `.py` files. 2025-09-09T05:10:13,264 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,264 directory, all directories are treated like packages. 2025-09-09T05:10:13,264 ******************************************************************************** 2025-09-09T05:10:13,265 !! 2025-09-09T05:10:13,265 check.warn(importable) 2025-09-09T05:10:13,265 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.gso.searchspace.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,265 !! 2025-09-09T05:10:13,265 ******************************************************************************** 2025-09-09T05:10:13,265 ############################ 2025-09-09T05:10:13,265 # Package would be ignored # 2025-09-09T05:10:13,265 ############################ 2025-09-09T05:10:13,265 Python recognizes 'lightdock.test.gso.searchspace.golden_data' as an importable package[^1], 2025-09-09T05:10:13,265 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,266 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,266 package, please make sure that 'lightdock.test.gso.searchspace.golden_data' is explicitly added 2025-09-09T05:10:13,266 to the `packages` configuration field. 2025-09-09T05:10:13,266 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,266 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,266 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,266 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,267 If you don't want 'lightdock.test.gso.searchspace.golden_data' to be distributed and are 2025-09-09T05:10:13,267 already explicitly excluding 'lightdock.test.gso.searchspace.golden_data' via 2025-09-09T05:10:13,267 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,267 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,267 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,267 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,267 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,267 even if it does not contain any `.py` files. 2025-09-09T05:10:13,268 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,268 directory, all directories are treated like packages. 2025-09-09T05:10:13,268 ******************************************************************************** 2025-09-09T05:10:13,268 !! 2025-09-09T05:10:13,268 check.warn(importable) 2025-09-09T05:10:13,268 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.mathutil.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,268 !! 2025-09-09T05:10:13,268 ******************************************************************************** 2025-09-09T05:10:13,268 ############################ 2025-09-09T05:10:13,268 # Package would be ignored # 2025-09-09T05:10:13,269 ############################ 2025-09-09T05:10:13,269 Python recognizes 'lightdock.test.mathutil.golden_data' as an importable package[^1], 2025-09-09T05:10:13,269 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,269 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,269 package, please make sure that 'lightdock.test.mathutil.golden_data' is explicitly added 2025-09-09T05:10:13,269 to the `packages` configuration field. 2025-09-09T05:10:13,269 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,269 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,270 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,270 If you don't want 'lightdock.test.mathutil.golden_data' to be distributed and are 2025-09-09T05:10:13,270 already explicitly excluding 'lightdock.test.mathutil.golden_data' via 2025-09-09T05:10:13,270 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,270 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,270 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,270 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,271 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,271 even if it does not contain any `.py` files. 2025-09-09T05:10:13,271 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,271 directory, all directories are treated like packages. 2025-09-09T05:10:13,271 ******************************************************************************** 2025-09-09T05:10:13,271 !! 2025-09-09T05:10:13,271 check.warn(importable) 2025-09-09T05:10:13,272 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.pdbutil.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,272 !! 2025-09-09T05:10:13,272 ******************************************************************************** 2025-09-09T05:10:13,272 ############################ 2025-09-09T05:10:13,272 # Package would be ignored # 2025-09-09T05:10:13,272 ############################ 2025-09-09T05:10:13,272 Python recognizes 'lightdock.test.pdbutil.golden_data' as an importable package[^1], 2025-09-09T05:10:13,272 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,272 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,272 package, please make sure that 'lightdock.test.pdbutil.golden_data' is explicitly added 2025-09-09T05:10:13,273 to the `packages` configuration field. 2025-09-09T05:10:13,273 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,273 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,273 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,273 If you don't want 'lightdock.test.pdbutil.golden_data' to be distributed and are 2025-09-09T05:10:13,274 already explicitly excluding 'lightdock.test.pdbutil.golden_data' via 2025-09-09T05:10:13,274 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,274 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,274 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,274 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,274 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,274 even if it does not contain any `.py` files. 2025-09-09T05:10:13,275 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,275 directory, all directories are treated like packages. 2025-09-09T05:10:13,275 ******************************************************************************** 2025-09-09T05:10:13,275 !! 2025-09-09T05:10:13,275 check.warn(importable) 2025-09-09T05:10:13,275 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,275 !! 2025-09-09T05:10:13,275 ******************************************************************************** 2025-09-09T05:10:13,275 ############################ 2025-09-09T05:10:13,275 # Package would be ignored # 2025-09-09T05:10:13,275 ############################ 2025-09-09T05:10:13,276 Python recognizes 'lightdock.test.prep.golden_data' as an importable package[^1], 2025-09-09T05:10:13,276 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,276 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,276 package, please make sure that 'lightdock.test.prep.golden_data' is explicitly added 2025-09-09T05:10:13,276 to the `packages` configuration field. 2025-09-09T05:10:13,276 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,276 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,276 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,277 If you don't want 'lightdock.test.prep.golden_data' to be distributed and are 2025-09-09T05:10:13,277 already explicitly excluding 'lightdock.test.prep.golden_data' via 2025-09-09T05:10:13,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,277 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,277 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,278 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,278 even if it does not contain any `.py` files. 2025-09-09T05:10:13,278 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,278 directory, all directories are treated like packages. 2025-09-09T05:10:13,278 ******************************************************************************** 2025-09-09T05:10:13,278 !! 2025-09-09T05:10:13,278 check.warn(importable) 2025-09-09T05:10:13,278 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data.create_simulation_info_file' is absent from the `packages` configuration. 2025-09-09T05:10:13,278 !! 2025-09-09T05:10:13,279 ******************************************************************************** 2025-09-09T05:10:13,279 ############################ 2025-09-09T05:10:13,279 # Package would be ignored # 2025-09-09T05:10:13,279 ############################ 2025-09-09T05:10:13,279 Python recognizes 'lightdock.test.prep.golden_data.create_simulation_info_file' as an importable package[^1], 2025-09-09T05:10:13,279 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,279 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,279 package, please make sure that 'lightdock.test.prep.golden_data.create_simulation_info_file' is explicitly added 2025-09-09T05:10:13,279 to the `packages` configuration field. 2025-09-09T05:10:13,280 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,280 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,280 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,280 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,280 If you don't want 'lightdock.test.prep.golden_data.create_simulation_info_file' to be distributed and are 2025-09-09T05:10:13,280 already explicitly excluding 'lightdock.test.prep.golden_data.create_simulation_info_file' via 2025-09-09T05:10:13,280 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,281 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,281 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,281 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,281 even if it does not contain any `.py` files. 2025-09-09T05:10:13,281 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,281 directory, all directories are treated like packages. 2025-09-09T05:10:13,281 ******************************************************************************** 2025-09-09T05:10:13,282 !! 2025-09-09T05:10:13,282 check.warn(importable) 2025-09-09T05:10:13,282 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data.load_starting_positions.ok.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,282 !! 2025-09-09T05:10:13,282 ******************************************************************************** 2025-09-09T05:10:13,282 ############################ 2025-09-09T05:10:13,282 # Package would be ignored # 2025-09-09T05:10:13,282 ############################ 2025-09-09T05:10:13,282 Python recognizes 'lightdock.test.prep.golden_data.load_starting_positions.ok.init' as an importable package[^1], 2025-09-09T05:10:13,282 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,283 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,283 package, please make sure that 'lightdock.test.prep.golden_data.load_starting_positions.ok.init' is explicitly added 2025-09-09T05:10:13,283 to the `packages` configuration field. 2025-09-09T05:10:13,283 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,283 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,283 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,283 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,283 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,284 If you don't want 'lightdock.test.prep.golden_data.load_starting_positions.ok.init' to be distributed and are 2025-09-09T05:10:13,284 already explicitly excluding 'lightdock.test.prep.golden_data.load_starting_positions.ok.init' via 2025-09-09T05:10:13,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,284 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,284 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,285 even if it does not contain any `.py` files. 2025-09-09T05:10:13,285 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,285 directory, all directories are treated like packages. 2025-09-09T05:10:13,285 ******************************************************************************** 2025-09-09T05:10:13,285 !! 2025-09-09T05:10:13,285 check.warn(importable) 2025-09-09T05:10:13,285 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.prep.golden_data.load_starting_positions.wrong_dat.init' is absent from the `packages` configuration. 2025-09-09T05:10:13,285 !! 2025-09-09T05:10:13,286 ******************************************************************************** 2025-09-09T05:10:13,286 ############################ 2025-09-09T05:10:13,286 # Package would be ignored # 2025-09-09T05:10:13,286 ############################ 2025-09-09T05:10:13,286 Python recognizes 'lightdock.test.prep.golden_data.load_starting_positions.wrong_dat.init' as an importable package[^1], 2025-09-09T05:10:13,286 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,286 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,286 package, please make sure that 'lightdock.test.prep.golden_data.load_starting_positions.wrong_dat.init' is explicitly added 2025-09-09T05:10:13,286 to the `packages` configuration field. 2025-09-09T05:10:13,287 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,287 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,287 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,287 If you don't want 'lightdock.test.prep.golden_data.load_starting_positions.wrong_dat.init' to be distributed and are 2025-09-09T05:10:13,287 already explicitly excluding 'lightdock.test.prep.golden_data.load_starting_positions.wrong_dat.init' via 2025-09-09T05:10:13,287 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,288 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,288 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,288 even if it does not contain any `.py` files. 2025-09-09T05:10:13,288 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,288 directory, all directories are treated like packages. 2025-09-09T05:10:13,288 ******************************************************************************** 2025-09-09T05:10:13,289 !! 2025-09-09T05:10:13,289 check.warn(importable) 2025-09-09T05:10:13,289 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.scoring.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,289 !! 2025-09-09T05:10:13,289 ******************************************************************************** 2025-09-09T05:10:13,289 ############################ 2025-09-09T05:10:13,289 # Package would be ignored # 2025-09-09T05:10:13,289 ############################ 2025-09-09T05:10:13,289 Python recognizes 'lightdock.test.scoring.golden_data' as an importable package[^1], 2025-09-09T05:10:13,290 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,290 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,290 package, please make sure that 'lightdock.test.scoring.golden_data' is explicitly added 2025-09-09T05:10:13,290 to the `packages` configuration field. 2025-09-09T05:10:13,290 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,290 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,290 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,291 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,291 If you don't want 'lightdock.test.scoring.golden_data' to be distributed and are 2025-09-09T05:10:13,291 already explicitly excluding 'lightdock.test.scoring.golden_data' via 2025-09-09T05:10:13,291 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,291 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,291 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,291 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,291 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,292 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,292 even if it does not contain any `.py` files. 2025-09-09T05:10:13,292 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,292 directory, all directories are treated like packages. 2025-09-09T05:10:13,292 ******************************************************************************** 2025-09-09T05:10:13,292 !! 2025-09-09T05:10:13,292 check.warn(importable) 2025-09-09T05:10:13,292 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,293 !! 2025-09-09T05:10:13,293 ******************************************************************************** 2025-09-09T05:10:13,293 ############################ 2025-09-09T05:10:13,293 # Package would be ignored # 2025-09-09T05:10:13,293 ############################ 2025-09-09T05:10:13,293 Python recognizes 'lightdock.test.structure.golden_data' as an importable package[^1], 2025-09-09T05:10:13,293 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,293 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,293 package, please make sure that 'lightdock.test.structure.golden_data' is explicitly added 2025-09-09T05:10:13,293 to the `packages` configuration field. 2025-09-09T05:10:13,294 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,294 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,294 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,294 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,294 If you don't want 'lightdock.test.structure.golden_data' to be distributed and are 2025-09-09T05:10:13,294 already explicitly excluding 'lightdock.test.structure.golden_data' via 2025-09-09T05:10:13,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,295 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,295 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,295 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,295 even if it does not contain any `.py` files. 2025-09-09T05:10:13,295 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,295 directory, all directories are treated like packages. 2025-09-09T05:10:13,296 ******************************************************************************** 2025-09-09T05:10:13,296 !! 2025-09-09T05:10:13,296 check.warn(importable) 2025-09-09T05:10:13,296 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_dna' is absent from the `packages` configuration. 2025-09-09T05:10:13,296 !! 2025-09-09T05:10:13,296 ******************************************************************************** 2025-09-09T05:10:13,296 ############################ 2025-09-09T05:10:13,296 # Package would be ignored # 2025-09-09T05:10:13,296 ############################ 2025-09-09T05:10:13,297 Python recognizes 'lightdock.test.structure.golden_data.nm_dna' as an importable package[^1], 2025-09-09T05:10:13,297 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,297 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,297 package, please make sure that 'lightdock.test.structure.golden_data.nm_dna' is explicitly added 2025-09-09T05:10:13,297 to the `packages` configuration field. 2025-09-09T05:10:13,297 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,297 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,297 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,298 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,298 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,298 If you don't want 'lightdock.test.structure.golden_data.nm_dna' to be distributed and are 2025-09-09T05:10:13,298 already explicitly excluding 'lightdock.test.structure.golden_data.nm_dna' via 2025-09-09T05:10:13,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,298 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,298 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,299 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,299 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,299 even if it does not contain any `.py` files. 2025-09-09T05:10:13,299 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,299 directory, all directories are treated like packages. 2025-09-09T05:10:13,299 ******************************************************************************** 2025-09-09T05:10:13,299 !! 2025-09-09T05:10:13,300 check.warn(importable) 2025-09-09T05:10:13,300 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.structure.golden_data.nm_prot' is absent from the `packages` configuration. 2025-09-09T05:10:13,300 !! 2025-09-09T05:10:13,300 ******************************************************************************** 2025-09-09T05:10:13,300 ############################ 2025-09-09T05:10:13,300 # Package would be ignored # 2025-09-09T05:10:13,300 ############################ 2025-09-09T05:10:13,300 Python recognizes 'lightdock.test.structure.golden_data.nm_prot' as an importable package[^1], 2025-09-09T05:10:13,300 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,300 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,301 package, please make sure that 'lightdock.test.structure.golden_data.nm_prot' is explicitly added 2025-09-09T05:10:13,301 to the `packages` configuration field. 2025-09-09T05:10:13,301 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,301 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,301 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,301 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,301 If you don't want 'lightdock.test.structure.golden_data.nm_prot' to be distributed and are 2025-09-09T05:10:13,302 already explicitly excluding 'lightdock.test.structure.golden_data.nm_prot' via 2025-09-09T05:10:13,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,302 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,302 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,302 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,303 even if it does not contain any `.py` files. 2025-09-09T05:10:13,303 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,303 directory, all directories are treated like packages. 2025-09-09T05:10:13,303 ******************************************************************************** 2025-09-09T05:10:13,303 !! 2025-09-09T05:10:13,303 check.warn(importable) 2025-09-09T05:10:13,303 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lightdock.test.util.golden_data' is absent from the `packages` configuration. 2025-09-09T05:10:13,303 !! 2025-09-09T05:10:13,303 ******************************************************************************** 2025-09-09T05:10:13,304 ############################ 2025-09-09T05:10:13,304 # Package would be ignored # 2025-09-09T05:10:13,304 ############################ 2025-09-09T05:10:13,304 Python recognizes 'lightdock.test.util.golden_data' as an importable package[^1], 2025-09-09T05:10:13,304 but it is absent from setuptools' `packages` configuration. 2025-09-09T05:10:13,304 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-09T05:10:13,304 package, please make sure that 'lightdock.test.util.golden_data' is explicitly added 2025-09-09T05:10:13,304 to the `packages` configuration field. 2025-09-09T05:10:13,304 Alternatively, you can also rely on setuptools' discovery methods 2025-09-09T05:10:13,304 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-09T05:10:13,305 instead of `find_packages(...)`/`find:`). 2025-09-09T05:10:13,305 You can read more about "package discovery" on setuptools documentation page: 2025-09-09T05:10:13,305 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-09T05:10:13,305 If you don't want 'lightdock.test.util.golden_data' to be distributed and are 2025-09-09T05:10:13,305 already explicitly excluding 'lightdock.test.util.golden_data' via 2025-09-09T05:10:13,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-09T05:10:13,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-09T05:10:13,305 combination with a more fine grained `package-data` configuration. 2025-09-09T05:10:13,306 You can read more about "package data files" on setuptools documentation page: 2025-09-09T05:10:13,306 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-09T05:10:13,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-09T05:10:13,306 even if it does not contain any `.py` files. 2025-09-09T05:10:13,306 On the other hand, currently there is no concept of package data 2025-09-09T05:10:13,306 directory, all directories are treated like packages. 2025-09-09T05:10:13,306 ******************************************************************************** 2025-09-09T05:10:13,307 !! 2025-09-09T05:10:13,307 check.warn(importable) 2025-09-09T05:10:13,307 creating build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T05:10:13,307 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/etc 2025-09-09T05:10:13,307 creating build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/lightdock_1czy_peptide.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/lightdock_1czy_protein.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/output_debug.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/output_error.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/output_warning.log -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,307 copying lightdock/test/util/golden_data/pdbs.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/util/golden_data 2025-09-09T05:10:13,308 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/two_residues.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/two_residues_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/two_residues_y_90_x_90.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data 2025-09-09T05:10:13,308 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/nm_dna/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/nm_dna/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_dna 2025-09-09T05:10:13,308 creating build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/nm_prot/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/nm_prot/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T05:10:13,308 copying lightdock/test/structure/golden_data/nm_prot/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T05:10:13,309 copying lightdock/test/structure/golden_data/nm_prot/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/structure/golden_data/nm_prot 2025-09-09T05:10:13,309 creating build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,309 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,310 copying lightdock/test/scoring/golden_data/1AY7_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,311 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,312 copying lightdock/test/scoring/golden_data/1AY7_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,313 copying lightdock/test/scoring/golden_data/1AY7lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,314 copying lightdock/test/scoring/golden_data/1AY7rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,315 copying lightdock/test/scoring/golden_data/1EAWlig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,315 copying lightdock/test/scoring/golden_data/1EAWrec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,317 copying lightdock/test/scoring/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,317 copying lightdock/test/scoring/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,318 copying lightdock/test/scoring/golden_data/1azp_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,319 copying lightdock/test/scoring/golden_data/1azp_prot.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,320 copying lightdock/test/scoring/golden_data/3mfk_dna.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,321 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,322 copying lightdock/test/scoring/golden_data/3mfk_homodimer.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/scoring/golden_data 2025-09-09T05:10:13,323 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,324 copying lightdock/test/prep/golden_data/100_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,324 copying lightdock/test/prep/golden_data/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,328 copying lightdock/test/prep/golden_data/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,328 copying lightdock/test/prep/golden_data/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,329 copying lightdock/test/prep/golden_data/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,330 copying lightdock/test/prep/golden_data/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,331 copying lightdock/test/prep/golden_data/pdb_files.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,332 copying lightdock/test/prep/golden_data/rst_1.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,332 copying lightdock/test/prep/golden_data/rst_2.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,333 copying lightdock/test/prep/golden_data/rst_3.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,333 copying lightdock/test/prep/golden_data/rst_4.lst -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,334 copying lightdock/test/prep/golden_data/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,334 copying lightdock/test/prep/golden_data/starting_points.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,335 copying lightdock/test/prep/golden_data/test.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data 2025-09-09T05:10:13,335 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,336 copying lightdock/test/prep/golden_data/3p0g/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,336 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,337 copying lightdock/test/prep/golden_data/3p0g/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,338 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,339 copying lightdock/test/prep/golden_data/3p0g/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,340 copying lightdock/test/prep/golden_data/3p0g/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,341 copying lightdock/test/prep/golden_data/3p0g/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,342 copying lightdock/test/prep/golden_data/3p0g/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g 2025-09-09T05:10:13,342 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,342 copying lightdock/test/prep/golden_data/3p0g/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,343 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,343 copying lightdock/test/prep/golden_data/3p0g/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,344 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,344 copying lightdock/test/prep/golden_data/3p0g/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,345 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,346 copying lightdock/test/prep/golden_data/3p0g/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/3p0g/init 2025-09-09T05:10:13,346 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/create_simulation_info_file 2025-09-09T05:10:13,346 copying lightdock/test/prep/golden_data/create_simulation_info_file/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/create_simulation_info_file 2025-09-09T05:10:13,347 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,347 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,348 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,348 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,349 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,349 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,350 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,351 copying lightdock/test/prep/golden_data/load_starting_positions/ok/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/ok/init 2025-09-09T05:10:13,351 creating build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,352 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,352 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,353 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,353 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,354 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,354 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,355 copying lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/prep/golden_data/load_starting_positions/wrong_dat/init 2025-09-09T05:10:13,355 creating build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,356 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,356 copying lightdock/test/pdbutil/golden_data/1PPE_l_u.pdb.parsed -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,357 copying lightdock/test/pdbutil/golden_data/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,357 copying lightdock/test/pdbutil/golden_data/multi_model.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,358 copying lightdock/test/pdbutil/golden_data/parsed_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/pdbutil/golden_data 2025-09-09T05:10:13,359 creating build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T05:10:13,359 copying lightdock/test/mathutil/golden_data/1PPE_l_u.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T05:10:13,359 copying lightdock/test/mathutil/golden_data/random_numbers.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T05:10:13,360 copying lightdock/test/mathutil/golden_data/wrong_line.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T05:10:13,361 copying lightdock/test/mathutil/golden_data/wrong_seed.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/mathutil/golden_data 2025-09-09T05:10:13,361 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,361 copying lightdock/test/gso/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,362 copying lightdock/test/gso/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,363 copying lightdock/test/gso/golden_data/gso_j3_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,364 copying lightdock/test/gso/golden_data/gso_j4_50.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,364 copying lightdock/test/gso/golden_data/gso_j5_70.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,365 copying lightdock/test/gso/golden_data/initial_population_from_file.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,365 copying lightdock/test/gso/golden_data/initial_population_random.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,366 copying lightdock/test/gso/golden_data/initial_positions.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,366 copying lightdock/test/gso/golden_data/initial_positions_1PPE.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,367 copying lightdock/test/gso/golden_data/initial_positions_empty.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,367 copying lightdock/test/gso/golden_data/initial_positions_redux.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,368 copying lightdock/test/gso/golden_data/initial_positions_with_error.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,368 copying lightdock/test/gso/golden_data/initial_positions_with_wrong_column.txt -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,369 copying lightdock/test/gso/golden_data/report_lightdockbuilder.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data 2025-09-09T05:10:13,369 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T05:10:13,370 copying lightdock/test/gso/golden_data/parameters/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T05:10:13,370 copying lightdock/test/gso/golden_data/parameters/wrong_glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/golden_data/parameters 2025-09-09T05:10:13,371 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,371 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,372 copying lightdock/test/bin/golden_data/regression_dfire2_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,373 copying lightdock/test/bin/golden_data/regression_dfire2_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,373 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,374 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,374 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,375 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,376 copying lightdock/test/bin/golden_data/regression_dfire2_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,377 copying lightdock/test/bin/golden_data/regression_dfire2_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,377 copying lightdock/test/bin/golden_data/regression_dfire2_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long 2025-09-09T05:10:13,378 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,378 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,379 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,379 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,380 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,380 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,381 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,381 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,382 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,383 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,383 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,384 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,384 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,385 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,386 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,386 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,387 copying lightdock/test/bin/golden_data/regression_dfire2_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/init 2025-09-09T05:10:13,387 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T05:10:13,387 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T05:10:13,388 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_0 2025-09-09T05:10:13,389 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T05:10:13,389 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T05:10:13,389 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_1 2025-09-09T05:10:13,390 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T05:10:13,390 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T05:10:13,391 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_2 2025-09-09T05:10:13,391 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T05:10:13,392 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T05:10:13,392 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_3 2025-09-09T05:10:13,393 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T05:10:13,393 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T05:10:13,394 copying lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_long/swarm_4 2025-09-09T05:10:13,394 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,394 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,395 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,396 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,397 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,397 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,398 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,399 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,399 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,400 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints 2025-09-09T05:10:13,401 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T05:10:13,401 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T05:10:13,402 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T05:10:13,402 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T05:10:13,403 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/init 2025-09-09T05:10:13,403 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T05:10:13,403 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T05:10:13,404 copying lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_restraints/swarm_0 2025-09-09T05:10:13,404 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,405 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,405 copying lightdock/test/bin/golden_data/regression_dfire2_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,406 copying lightdock/test/bin/golden_data/regression_dfire2_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,407 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,407 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,408 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,409 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,410 copying lightdock/test/bin/golden_data/regression_dfire2_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,410 copying lightdock/test/bin/golden_data/regression_dfire2_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,411 copying lightdock/test/bin/golden_data/regression_dfire2_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short 2025-09-09T05:10:13,411 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T05:10:13,412 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T05:10:13,412 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T05:10:13,413 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T05:10:13,413 copying lightdock/test/bin/golden_data/regression_dfire2_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/init 2025-09-09T05:10:13,414 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T05:10:13,414 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T05:10:13,415 copying lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire2_short/swarm_0 2025-09-09T05:10:13,415 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,415 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,416 copying lightdock/test/bin/golden_data/regression_dfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,417 copying lightdock/test/bin/golden_data/regression_dfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,418 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,418 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,419 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,419 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,421 copying lightdock/test/bin/golden_data/regression_dfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,421 copying lightdock/test/bin/golden_data/regression_dfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,422 copying lightdock/test/bin/golden_data/regression_dfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long 2025-09-09T05:10:13,422 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,423 copying lightdock/test/bin/golden_data/regression_dfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,423 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,424 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,424 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,425 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,426 copying lightdock/test/bin/golden_data/regression_dfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,426 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,427 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,427 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,428 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,428 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,429 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,430 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,430 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,431 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,431 copying lightdock/test/bin/golden_data/regression_dfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/init 2025-09-09T05:10:13,432 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T05:10:13,432 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T05:10:13,433 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_0 2025-09-09T05:10:13,433 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T05:10:13,433 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T05:10:13,434 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_1 2025-09-09T05:10:13,435 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T05:10:13,435 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T05:10:13,435 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_2 2025-09-09T05:10:13,436 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T05:10:13,436 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T05:10:13,437 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_3 2025-09-09T05:10:13,437 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T05:10:13,437 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T05:10:13,438 copying lightdock/test/bin/golden_data/regression_dfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_long/swarm_4 2025-09-09T05:10:13,439 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,439 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,440 copying lightdock/test/bin/golden_data/regression_dfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,441 copying lightdock/test/bin/golden_data/regression_dfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,441 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,442 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,442 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,443 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,444 copying lightdock/test/bin/golden_data/regression_dfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,445 copying lightdock/test/bin/golden_data/regression_dfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,445 copying lightdock/test/bin/golden_data/regression_dfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short 2025-09-09T05:10:13,446 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T05:10:13,446 copying lightdock/test/bin/golden_data/regression_dfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T05:10:13,446 copying lightdock/test/bin/golden_data/regression_dfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T05:10:13,447 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T05:10:13,447 copying lightdock/test/bin/golden_data/regression_dfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/init 2025-09-09T05:10:13,448 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T05:10:13,448 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T05:10:13,449 copying lightdock/test/bin/golden_data/regression_dfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dfire_short/swarm_0 2025-09-09T05:10:13,449 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,450 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,450 copying lightdock/test/bin/golden_data/regression_dna_restraints/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,452 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,453 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,453 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,454 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,456 copying lightdock/test/bin/golden_data/regression_dna_restraints/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,456 copying lightdock/test/bin/golden_data/regression_dna_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,457 copying lightdock/test/bin/golden_data/regression_dna_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints 2025-09-09T05:10:13,457 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T05:10:13,458 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T05:10:13,458 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T05:10:13,459 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T05:10:13,459 copying lightdock/test/bin/golden_data/regression_dna_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/init 2025-09-09T05:10:13,460 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T05:10:13,460 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T05:10:13,461 copying lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_restraints/swarm_0 2025-09-09T05:10:13,461 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,462 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,462 copying lightdock/test/bin/golden_data/regression_dna_short/1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,464 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,465 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,465 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,466 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,468 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_1DIZ_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,468 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,469 copying lightdock/test/bin/golden_data/regression_dna_short/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,474 copying lightdock/test/bin/golden_data/regression_dna_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short 2025-09-09T05:10:13,474 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T05:10:13,475 copying lightdock/test/bin/golden_data/regression_dna_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T05:10:13,475 copying lightdock/test/bin/golden_data/regression_dna_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T05:10:13,476 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T05:10:13,476 copying lightdock/test/bin/golden_data/regression_dna_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/init 2025-09-09T05:10:13,477 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T05:10:13,477 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T05:10:13,478 copying lightdock/test/bin/golden_data/regression_dna_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_dna_short/swarm_0 2025-09-09T05:10:13,478 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,478 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,479 copying lightdock/test/bin/golden_data/regression_fastdfire_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,480 copying lightdock/test/bin/golden_data/regression_fastdfire_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,481 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,481 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,482 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,483 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,484 copying lightdock/test/bin/golden_data/regression_fastdfire_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,484 copying lightdock/test/bin/golden_data/regression_fastdfire_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,485 copying lightdock/test/bin/golden_data/regression_fastdfire_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long 2025-09-09T05:10:13,485 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,486 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,486 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,487 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,487 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,488 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,488 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,489 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,489 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,490 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,491 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,491 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,492 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,492 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,493 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,493 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,494 copying lightdock/test/bin/golden_data/regression_fastdfire_long/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/init 2025-09-09T05:10:13,494 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T05:10:13,495 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T05:10:13,495 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_0 2025-09-09T05:10:13,496 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T05:10:13,496 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T05:10:13,497 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_1 2025-09-09T05:10:13,497 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T05:10:13,497 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T05:10:13,498 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_2 2025-09-09T05:10:13,499 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T05:10:13,499 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T05:10:13,499 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_3 2025-09-09T05:10:13,500 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T05:10:13,500 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T05:10:13,501 copying lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_long/swarm_4 2025-09-09T05:10:13,501 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,502 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,502 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,503 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,504 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,504 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,505 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,506 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,507 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,507 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,508 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints 2025-09-09T05:10:13,508 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T05:10:13,508 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T05:10:13,509 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T05:10:13,510 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T05:10:13,510 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/init 2025-09-09T05:10:13,511 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T05:10:13,511 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T05:10:13,511 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T05:10:13,512 copying lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_restraints/swarm_0 2025-09-09T05:10:13,513 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,513 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,513 copying lightdock/test/bin/golden_data/regression_fastdfire_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,514 copying lightdock/test/bin/golden_data/regression_fastdfire_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,515 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,515 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,516 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,517 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,518 copying lightdock/test/bin/golden_data/regression_fastdfire_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,518 copying lightdock/test/bin/golden_data/regression_fastdfire_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,519 copying lightdock/test/bin/golden_data/regression_fastdfire_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short 2025-09-09T05:10:13,519 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T05:10:13,520 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T05:10:13,520 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T05:10:13,521 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T05:10:13,521 copying lightdock/test/bin/golden_data/regression_fastdfire_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/init 2025-09-09T05:10:13,522 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T05:10:13,522 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T05:10:13,523 copying lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_fastdfire_short/swarm_0 2025-09-09T05:10:13,523 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,523 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,524 copying lightdock/test/bin/golden_data/regression_mj3h_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,525 copying lightdock/test/bin/golden_data/regression_mj3h_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,526 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,526 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,527 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,527 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,528 copying lightdock/test/bin/golden_data/regression_mj3h_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,529 copying lightdock/test/bin/golden_data/regression_mj3h_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,530 copying lightdock/test/bin/golden_data/regression_mj3h_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long 2025-09-09T05:10:13,530 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T05:10:13,530 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T05:10:13,531 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T05:10:13,531 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T05:10:13,532 copying lightdock/test/bin/golden_data/regression_mj3h_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/init 2025-09-09T05:10:13,533 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T05:10:13,533 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T05:10:13,533 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T05:10:13,534 copying lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_long/swarm_0 2025-09-09T05:10:13,534 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,535 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,535 copying lightdock/test/bin/golden_data/regression_mj3h_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,536 copying lightdock/test/bin/golden_data/regression_mj3h_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,537 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,537 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,538 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,539 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,540 copying lightdock/test/bin/golden_data/regression_mj3h_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,541 copying lightdock/test/bin/golden_data/regression_mj3h_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,541 copying lightdock/test/bin/golden_data/regression_mj3h_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short 2025-09-09T05:10:13,542 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T05:10:13,542 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T05:10:13,542 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T05:10:13,543 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T05:10:13,543 copying lightdock/test/bin/golden_data/regression_mj3h_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/init 2025-09-09T05:10:13,544 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T05:10:13,544 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T05:10:13,545 copying lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_mj3h_short/swarm_0 2025-09-09T05:10:13,545 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,545 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,546 copying lightdock/test/bin/golden_data/regression_pisa_long/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,547 copying lightdock/test/bin/golden_data/regression_pisa_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,548 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,548 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,549 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,549 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,551 copying lightdock/test/bin/golden_data/regression_pisa_long/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,551 copying lightdock/test/bin/golden_data/regression_pisa_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,552 copying lightdock/test/bin/golden_data/regression_pisa_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long 2025-09-09T05:10:13,552 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T05:10:13,552 copying lightdock/test/bin/golden_data/regression_pisa_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T05:10:13,553 copying lightdock/test/bin/golden_data/regression_pisa_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T05:10:13,554 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T05:10:13,554 copying lightdock/test/bin/golden_data/regression_pisa_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/init 2025-09-09T05:10:13,555 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T05:10:13,555 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T05:10:13,555 copying lightdock/test/bin/golden_data/regression_pisa_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_long/swarm_0 2025-09-09T05:10:13,556 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,556 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,557 copying lightdock/test/bin/golden_data/regression_pisa_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,558 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,558 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,559 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,560 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,561 copying lightdock/test/bin/golden_data/regression_pisa_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,561 copying lightdock/test/bin/golden_data/regression_pisa_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,562 copying lightdock/test/bin/golden_data/regression_pisa_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints 2025-09-09T05:10:13,562 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T05:10:13,563 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T05:10:13,563 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T05:10:13,564 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T05:10:13,564 copying lightdock/test/bin/golden_data/regression_pisa_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/init 2025-09-09T05:10:13,565 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T05:10:13,565 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T05:10:13,566 copying lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_restraints/swarm_0 2025-09-09T05:10:13,566 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,566 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,567 copying lightdock/test/bin/golden_data/regression_pisa_short/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,568 copying lightdock/test/bin/golden_data/regression_pisa_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,569 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,569 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,570 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,570 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,571 copying lightdock/test/bin/golden_data/regression_pisa_short/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,572 copying lightdock/test/bin/golden_data/regression_pisa_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,572 copying lightdock/test/bin/golden_data/regression_pisa_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short 2025-09-09T05:10:13,573 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T05:10:13,573 copying lightdock/test/bin/golden_data/regression_pisa_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T05:10:13,574 copying lightdock/test/bin/golden_data/regression_pisa_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T05:10:13,574 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T05:10:13,575 copying lightdock/test/bin/golden_data/regression_pisa_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/init 2025-09-09T05:10:13,575 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T05:10:13,576 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T05:10:13,576 copying lightdock/test/bin/golden_data/regression_pisa_short/swarm_0/gso_5.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pisa_short/swarm_0 2025-09-09T05:10:13,577 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,577 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,578 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,578 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,580 copying lightdock/test/bin/golden_data/regression_pydock_long/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,581 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,582 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,583 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,583 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,585 copying lightdock/test/bin/golden_data/regression_pydock_long/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,585 copying lightdock/test/bin/golden_data/regression_pydock_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,586 copying lightdock/test/bin/golden_data/regression_pydock_long/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long 2025-09-09T05:10:13,586 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T05:10:13,586 copying lightdock/test/bin/golden_data/regression_pydock_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T05:10:13,587 copying lightdock/test/bin/golden_data/regression_pydock_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T05:10:13,588 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T05:10:13,588 copying lightdock/test/bin/golden_data/regression_pydock_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/init 2025-09-09T05:10:13,589 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T05:10:13,589 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T05:10:13,589 copying lightdock/test/bin/golden_data/regression_pydock_long/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_long/swarm_0 2025-09-09T05:10:13,590 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,590 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,591 copying lightdock/test/bin/golden_data/regression_pydock_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,592 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,592 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,593 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,594 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,595 copying lightdock/test/bin/golden_data/regression_pydock_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,595 copying lightdock/test/bin/golden_data/regression_pydock_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,596 copying lightdock/test/bin/golden_data/regression_pydock_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints 2025-09-09T05:10:13,596 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T05:10:13,597 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T05:10:13,597 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T05:10:13,598 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T05:10:13,598 copying lightdock/test/bin/golden_data/regression_pydock_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/init 2025-09-09T05:10:13,599 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T05:10:13,599 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T05:10:13,600 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T05:10:13,600 copying lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0/gso_20.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_restraints/swarm_0 2025-09-09T05:10:13,601 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,601 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,602 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_lig.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,603 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.H -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,604 copying lightdock/test/bin/golden_data/regression_pydock_short/1PPE_rec.pdb.amber -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,605 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,606 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_lig.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,606 copying lightdock/test/bin/golden_data/regression_pydock_short/lightdock_1PPE_rec.pdb.H.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,607 copying lightdock/test/bin/golden_data/regression_pydock_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,607 copying lightdock/test/bin/golden_data/regression_pydock_short/test_lightdock.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short 2025-09-09T05:10:13,608 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T05:10:13,608 copying lightdock/test/bin/golden_data/regression_pydock_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T05:10:13,609 copying lightdock/test/bin/golden_data/regression_pydock_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T05:10:13,609 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T05:10:13,610 copying lightdock/test/bin/golden_data/regression_pydock_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/init 2025-09-09T05:10:13,610 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T05:10:13,611 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T05:10:13,611 copying lightdock/test/bin/golden_data/regression_pydock_short/swarm_0/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_pydock_short/swarm_0 2025-09-09T05:10:13,612 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,612 copying lightdock/test/bin/golden_data/regression_setup/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,613 copying lightdock/test/bin/golden_data/regression_setup/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,614 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,614 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,615 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,616 copying lightdock/test/bin/golden_data/regression_setup/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,616 copying lightdock/test/bin/golden_data/regression_setup/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,617 copying lightdock/test/bin/golden_data/regression_setup/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,619 copying lightdock/test/bin/golden_data/regression_setup/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup 2025-09-09T05:10:13,620 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,620 copying lightdock/test/bin/golden_data/regression_setup/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,621 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,621 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,622 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,622 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,623 copying lightdock/test/bin/golden_data/regression_setup/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,624 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,624 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,625 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,625 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,626 copying lightdock/test/bin/golden_data/regression_setup/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,626 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,627 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,627 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,628 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,628 copying lightdock/test/bin/golden_data/regression_setup/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup/init 2025-09-09T05:10:13,629 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,629 copying lightdock/test/bin/golden_data/regression_setup_membrane/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,632 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,635 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,635 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,637 copying lightdock/test/bin/golden_data/regression_setup_membrane/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,638 copying lightdock/test/bin/golden_data/regression_setup_membrane/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,640 copying lightdock/test/bin/golden_data/regression_setup_membrane/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane 2025-09-09T05:10:13,640 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,640 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,641 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,642 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,642 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,643 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,643 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_12.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,644 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_13.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,644 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,645 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,645 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,646 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,646 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,647 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,647 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,648 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,648 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,649 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,650 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,650 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,651 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_12.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,651 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_13.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,652 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,652 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,653 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,653 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,654 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,655 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,655 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,656 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,656 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,657 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,657 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,658 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,658 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,659 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,659 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,660 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,660 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,661 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,661 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,662 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,662 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,663 copying lightdock/test/bin/golden_data/regression_setup_membrane/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane/init 2025-09-09T05:10:13,664 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,664 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,667 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,669 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_ligand.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,670 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,672 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/lightdock_receptor_membrane.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,673 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/receptor_membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,674 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,675 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints 2025-09-09T05:10:13,676 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,676 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,676 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,677 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,677 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_10.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,678 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_11.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,678 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,679 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,680 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,680 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,681 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,681 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,682 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_8.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,682 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/initial_positions_9.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,683 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,683 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,684 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_10.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,684 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_11.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,685 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,685 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,686 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,687 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,687 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,688 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,688 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_8.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,689 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_poses_9.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,689 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,690 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,690 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,691 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,691 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,692 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,693 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,693 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,694 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,694 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,695 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,695 copying lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init/starting_positions_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_membrane_restraints/init 2025-09-09T05:10:13,696 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,696 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,697 copying lightdock/test/bin/golden_data/regression_setup_rst/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,698 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,698 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,699 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,700 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,700 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,701 copying lightdock/test/bin/golden_data/regression_setup_rst/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,703 copying lightdock/test/bin/golden_data/regression_setup_rst/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,704 copying lightdock/test/bin/golden_data/regression_setup_rst/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst 2025-09-09T05:10:13,704 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,705 copying lightdock/test/bin/golden_data/regression_setup_rst/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,705 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,706 copying lightdock/test/bin/golden_data/regression_setup_rst/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,706 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,707 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,707 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,708 copying lightdock/test/bin/golden_data/regression_setup_rst/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_setup_rst/init 2025-09-09T05:10:13,708 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,709 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,712 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,713 copying lightdock/test/bin/golden_data/regression_tobi_long/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,714 copying lightdock/test/bin/golden_data/regression_tobi_long/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,715 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,715 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,716 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,716 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,717 copying lightdock/test/bin/golden_data/regression_tobi_long/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,718 copying lightdock/test/bin/golden_data/regression_tobi_long/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long 2025-09-09T05:10:13,718 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T05:10:13,719 copying lightdock/test/bin/golden_data/regression_tobi_long/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T05:10:13,719 copying lightdock/test/bin/golden_data/regression_tobi_long/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T05:10:13,720 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T05:10:13,721 copying lightdock/test/bin/golden_data/regression_tobi_long/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/init 2025-09-09T05:10:13,722 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T05:10:13,722 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T05:10:13,722 copying lightdock/test/bin/golden_data/regression_tobi_long/swarm_0/gso_2.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_long/swarm_0 2025-09-09T05:10:13,723 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,723 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,724 copying lightdock/test/bin/golden_data/regression_tobi_restraints/2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,725 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,725 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,726 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,727 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,728 copying lightdock/test/bin/golden_data/regression_tobi_restraints/lightdock_2UUY_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,728 copying lightdock/test/bin/golden_data/regression_tobi_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,729 copying lightdock/test/bin/golden_data/regression_tobi_restraints/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints 2025-09-09T05:10:13,729 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T05:10:13,730 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T05:10:13,730 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T05:10:13,731 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T05:10:13,731 copying lightdock/test/bin/golden_data/regression_tobi_restraints/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/init 2025-09-09T05:10:13,732 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T05:10:13,732 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T05:10:13,733 copying lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_restraints/swarm_0 2025-09-09T05:10:13,733 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,733 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE.ftdock -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,737 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,738 copying lightdock/test/bin/golden_data/regression_tobi_short/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,739 copying lightdock/test/bin/golden_data/regression_tobi_short/glowworm.conf -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,739 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,740 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,741 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_lig.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,741 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,742 copying lightdock/test/bin/golden_data/regression_tobi_short/lightdock_1PPE_rec.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,743 copying lightdock/test/bin/golden_data/regression_tobi_short/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short 2025-09-09T05:10:13,743 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T05:10:13,744 copying lightdock/test/bin/golden_data/regression_tobi_short/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T05:10:13,744 copying lightdock/test/bin/golden_data/regression_tobi_short/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T05:10:13,745 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T05:10:13,746 copying lightdock/test/bin/golden_data/regression_tobi_short/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/init 2025-09-09T05:10:13,746 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T05:10:13,747 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T05:10:13,747 copying lightdock/test/bin/golden_data/regression_tobi_short/swarm_0/gso_4.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/golden_data/regression_tobi_short/swarm_0 2025-09-09T05:10:13,748 creating build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T05:10:13,748 copying lightdock/test/gso/searchspace/golden_data/1PPElig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T05:10:13,749 copying lightdock/test/gso/searchspace/golden_data/1PPElig_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T05:10:13,749 copying lightdock/test/gso/searchspace/golden_data/1PPElig_trans_10_rotated_y_180.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T05:10:13,750 copying lightdock/test/gso/searchspace/golden_data/1PPErec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/gso/searchspace/golden_data 2025-09-09T05:10:13,751 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T05:10:13,751 copying lightdock/test/bin/post/golden_data/1PPE/evaluation.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T05:10:13,769 copying lightdock/test/bin/post/golden_data/1PPE/extra_data -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T05:10:13,789 copying lightdock/test/bin/post/golden_data/1PPE/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE 2025-09-09T05:10:13,792 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T05:10:13,792 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T05:10:13,794 copying lightdock/test/bin/post/golden_data/1PPE/results/clustered/success_rate.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/1PPE/results/clustered 2025-09-09T05:10:13,795 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,795 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,796 copying lightdock/test/bin/post/golden_data/4IZ7/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,797 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock.info -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,798 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,799 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_A_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,800 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,801 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_4IZ7_B_noh.pdb.xyz.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,801 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,802 copying lightdock/test/bin/post/golden_data/4IZ7/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,805 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,806 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_luciferin_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,807 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,807 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_rmsd_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,808 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,809 copying lightdock/test/bin/post/golden_data/4IZ7/rank_by_scoring_noclust.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,810 copying lightdock/test/bin/post/golden_data/4IZ7/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,810 copying lightdock/test/bin/post/golden_data/4IZ7/run.sh -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,811 copying lightdock/test/bin/post/golden_data/4IZ7/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,811 copying lightdock/test/bin/post/golden_data/4IZ7/solutions.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7 2025-09-09T05:10:13,812 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T05:10:13,812 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T05:10:13,813 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T05:10:13,814 copying lightdock/test/bin/post/golden_data/4IZ7/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/filtered 2025-09-09T05:10:13,816 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,816 copying lightdock/test/bin/post/golden_data/4IZ7/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,817 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,818 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,818 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,819 copying lightdock/test/bin/post/golden_data/4IZ7/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,819 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,820 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,821 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,821 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,822 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,822 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,823 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,823 copying lightdock/test/bin/post/golden_data/4IZ7/init/starting_positions_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/init 2025-09-09T05:10:13,824 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T05:10:13,824 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T05:10:13,825 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T05:10:13,825 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_0 2025-09-09T05:10:13,826 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T05:10:13,826 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T05:10:13,827 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T05:10:13,827 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_1 2025-09-09T05:10:13,828 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T05:10:13,828 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T05:10:13,829 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T05:10:13,830 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_2 2025-09-09T05:10:13,830 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T05:10:13,830 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T05:10:13,831 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T05:10:13,832 copying lightdock/test/bin/post/golden_data/4IZ7/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/4IZ7/swarm_3 2025-09-09T05:10:13,832 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,832 copying lightdock/test/bin/post/golden_data/cluster_bsas/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,833 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,833 copying lightdock/test/bin/post/golden_data/cluster_bsas/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,834 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,835 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,836 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,838 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,839 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,840 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,841 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,842 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,844 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,845 copying lightdock/test/bin/post/golden_data/cluster_bsas/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/cluster_bsas 2025-09-09T05:10:13,846 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T05:10:13,846 copying lightdock/test/bin/post/golden_data/create_membrane/membrane.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T05:10:13,847 copying lightdock/test/bin/post/golden_data/create_membrane/receptor.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/create_membrane 2025-09-09T05:10:13,848 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T05:10:13,848 copying lightdock/test/bin/post/golden_data/filter_restraints/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T05:10:13,849 copying lightdock/test/bin/post/golden_data/filter_restraints/restraints.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints 2025-09-09T05:10:13,850 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T05:10:13,850 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/rank_filtered.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T05:10:13,850 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_1_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T05:10:13,852 copying lightdock/test/bin/post/golden_data/filter_restraints/filtered/swarm_2_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/filtered 2025-09-09T05:10:13,854 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,854 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,855 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,855 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,856 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,857 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,859 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,861 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,862 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,864 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,866 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,867 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,869 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,871 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,872 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,874 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,876 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,877 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,879 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,881 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,882 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,884 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,885 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,887 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,889 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,890 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,892 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,894 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,895 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,897 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,899 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,900 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,902 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,904 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,905 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,907 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,909 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,910 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,912 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,913 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,915 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,917 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,918 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,920 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,922 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,923 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,925 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,927 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,928 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,930 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,932 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,933 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,935 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,936 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_0/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_0 2025-09-09T05:10:13,938 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,938 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,939 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,940 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,940 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,942 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,944 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,945 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,947 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,948 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,950 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,952 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,953 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,955 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,957 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,958 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,960 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,962 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,963 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,965 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,967 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,968 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,970 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,972 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,973 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,975 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,977 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,978 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,980 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,982 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,983 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,985 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,987 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,988 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,990 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,992 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,993 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,995 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,997 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:13,998 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,000 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,002 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,003 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,005 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,007 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,008 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,010 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,012 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,013 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,015 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,017 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,018 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,020 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,022 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_1/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_1 2025-09-09T05:10:14,023 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,023 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,024 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,025 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,025 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,027 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,029 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,030 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,032 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,034 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,035 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,037 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,038 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,040 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,042 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,043 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,045 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,047 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,048 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,050 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,052 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,053 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,055 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,056 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,058 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,060 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,062 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,063 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,065 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,066 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,068 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,070 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,071 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,073 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,075 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,076 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,078 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,080 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,081 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,083 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,085 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,086 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,088 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,090 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,091 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,093 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,094 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,096 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,098 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,099 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,101 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,103 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,105 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,106 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_2/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_2 2025-09-09T05:10:14,108 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,108 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,109 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,109 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,110 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,112 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,113 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,115 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_11.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,116 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_12.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,118 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_13.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,120 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_14.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,122 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_15.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,123 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_16.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,125 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_17.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,126 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_18.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,128 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_19.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,130 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,131 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_20.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,133 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_21.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,135 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_22.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,136 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_23.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,138 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_24.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,140 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_25.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,141 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_26.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,143 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_27.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,145 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_28.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,146 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_29.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,148 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,149 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_30.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,151 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_31.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,153 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_32.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,154 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_33.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,156 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_34.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,158 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_35.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,159 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_36.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,161 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_37.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,163 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_38.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,164 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_39.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,166 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,168 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_40.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,169 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_41.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,171 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_42.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,173 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_43.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,174 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_44.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,176 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_45.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,177 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_46.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,179 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_47.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,181 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_48.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,183 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_49.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,184 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,186 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,187 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,189 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,191 copying lightdock/test/bin/post/golden_data/filter_restraints/swarm_3/lightdock_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/filter_restraints/swarm_3 2025-09-09T05:10:14,192 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,193 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,193 copying lightdock/test/bin/post/golden_data/generate_conformations/1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,194 copying lightdock/test/bin/post/golden_data/generate_conformations/gso_1.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,195 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,196 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,197 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_lig.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,198 copying lightdock/test/bin/post/golden_data/generate_conformations/lightdock_1PPE_rec.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_conformations 2025-09-09T05:10:14,199 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T05:10:14,199 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T05:10:14,200 copying lightdock/test/bin/post/golden_data/generate_glowworm_positions/gso_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_glowworm_positions 2025-09-09T05:10:14,200 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,201 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,202 copying lightdock/test/bin/post/golden_data/generate_top/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,203 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,204 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,205 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,206 copying lightdock/test/bin/post/golden_data/generate_top/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,209 copying lightdock/test/bin/post/golden_data/generate_top/rank_by_scoring.list -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,210 copying lightdock/test/bin/post/golden_data/generate_top/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,210 copying lightdock/test/bin/post/golden_data/generate_top/top_1.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,212 copying lightdock/test/bin/post/golden_data/generate_top/top_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,214 copying lightdock/test/bin/post/golden_data/generate_top/top_2.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,215 copying lightdock/test/bin/post/golden_data/generate_top/top_3.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,217 copying lightdock/test/bin/post/golden_data/generate_top/top_4.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,219 copying lightdock/test/bin/post/golden_data/generate_top/top_5.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,220 copying lightdock/test/bin/post/golden_data/generate_top/top_6.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,222 copying lightdock/test/bin/post/golden_data/generate_top/top_7.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,223 copying lightdock/test/bin/post/golden_data/generate_top/top_8.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,225 copying lightdock/test/bin/post/golden_data/generate_top/top_9.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_top 2025-09-09T05:10:14,227 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,227 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_A_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,228 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,229 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_lig.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,230 copying lightdock/test/bin/post/golden_data/generate_trajectory/lightdock_rec.nm.npy -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,233 copying lightdock/test/bin/post/golden_data/generate_trajectory/setup.json -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory 2025-09-09T05:10:14,234 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T05:10:14,234 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_0.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T05:10:14,235 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T05:10:14,236 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_0.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T05:10:14,237 copying lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0/trajectory_4_step_10.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/generate_trajectory/swarm_0 2025-09-09T05:10:14,239 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,239 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/cluster_centers.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,240 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_0.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,241 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,241 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,242 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_3.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,243 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_4.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,243 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_5.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,244 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_6.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,245 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/initial_positions_7.dat -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,246 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_0.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,246 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_1.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,247 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_2.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,248 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_3.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,248 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_4.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,249 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_5.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,250 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_6.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,250 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init/starting_poses_7.bild -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/new/init 2025-09-09T05:10:14,251 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T05:10:14,251 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/cluster.repr -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T05:10:14,252 copying lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0/gso_10.out -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/prepare_new_simulation/swarm_0 2025-09-09T05:10:14,252 creating build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T05:10:14,253 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T05:10:14,254 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T05:10:14,254 copying lightdock/test/bin/post/golden_data/reference_points/4IZ7_B_noh.pdb.vol.pdb -> build/lib.linux-armv7l-cpython-313/lightdock/test/bin/post/golden_data/reference_points 2025-09-09T05:10:14,255 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T05:10:14,255 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T05:10:14,255 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/tobi/data 2025-09-09T05:10:14,256 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T05:10:14,256 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/data 2025-09-09T05:10:14,257 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T05:10:14,257 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/mj3h/data 2025-09-09T05:10:14,258 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T05:10:14,258 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/data 2025-09-09T05:10:14,281 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T05:10:14,282 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T05:10:14,306 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/data 2025-09-09T05:10:14,322 creating build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T05:10:14,322 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/data 2025-09-09T05:10:14,346 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/vdw/energy/c 2025-09-09T05:10:14,346 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sipper/c 2025-09-09T05:10:14,347 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/sd/energy/c 2025-09-09T05:10:14,347 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/pisa/cython 2025-09-09T05:10:14,349 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/fastdfire/c 2025-09-09T05:10:14,349 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dna/energy/c 2025-09-09T05:10:14,350 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire2/c 2025-09-09T05:10:14,351 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/dfire/cython 2025-09-09T05:10:14,352 copying lightdock/scoring/ddna/cython/cddna.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/ddna/cython 2025-09-09T05:10:14,353 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-cpython-313/lightdock/scoring/cpydock/energy/c 2025-09-09T05:10:14,354 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:14,355 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:14,357 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:14,358 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:14,359 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:14,360 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:14,361 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-cpython-313/lightdock/gso/searchspace/cython 2025-09-09T05:10:14,375 running build_ext 2025-09-09T05:10:14,731 building 'lightdock.mathutil.cython.cutil' extension 2025-09-09T05:10:14,732 creating build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython 2025-09-09T05:10:14,732 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-cpython-313/lightdock/mathutil/cython/cutil.o 2025-09-09T05:10:15,088 lightdock/mathutil/cython/cutil.c:196:12: fatal error: longintrepr.h: No such file or directory 2025-09-09T05:10:15,088 196 | #include "longintrepr.h" 2025-09-09T05:10:15,088 | ^~~~~~~~~~~~~~~ 2025-09-09T05:10:15,088 compilation terminated. 2025-09-09T05:10:15,091 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-09T05:10:15,267 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T05:10:15,279 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T05:10:15,279 exec(compile('"'"''"'"''"'"' 2025-09-09T05:10:15,279 # This is -- a caller that pip uses to run setup.py 2025-09-09T05:10:15,279 # 2025-09-09T05:10:15,279 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T05:10:15,279 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T05:10:15,279 # - It provides a clear error message when setuptools is not installed. 2025-09-09T05:10:15,279 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T05:10:15,279 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T05:10:15,279 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T05:10:15,279 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T05:10:15,279 import os, sys, tokenize, traceback 2025-09-09T05:10:15,279 2025-09-09T05:10:15,279 try: 2025-09-09T05:10:15,279 import setuptools 2025-09-09T05:10:15,279 except ImportError: 2025-09-09T05:10:15,279 print( 2025-09-09T05:10:15,279 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T05:10:15,279 "the build environment with exception:", 2025-09-09T05:10:15,279 file=sys.stderr, 2025-09-09T05:10:15,279 ) 2025-09-09T05:10:15,279 traceback.print_exc() 2025-09-09T05:10:15,279 sys.exit(1) 2025-09-09T05:10:15,279 2025-09-09T05:10:15,279 __file__ = %r 2025-09-09T05:10:15,279 sys.argv[0] = __file__ 2025-09-09T05:10:15,279 2025-09-09T05:10:15,279 if os.path.exists(__file__): 2025-09-09T05:10:15,279 filename = __file__ 2025-09-09T05:10:15,279 with tokenize.open(__file__) as f: 2025-09-09T05:10:15,279 setup_py_code = f.read() 2025-09-09T05:10:15,279 else: 2025-09-09T05:10:15,279 filename = "" 2025-09-09T05:10:15,279 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T05:10:15,279 2025-09-09T05:10:15,279 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T05:10:15,279 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ynmwilwt[/] 2025-09-09T05:10:15,279 [bold magenta]cwd[/]: /tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/ 2025-09-09T05:10:15,279 Building wheel for lightdock (setup.py): finished with status 'error' 2025-09-09T05:10:15,280 ERROR: Failed building wheel for lightdock 2025-09-09T05:10:15,281 Running setup.py clean for lightdock 2025-09-09T05:10:15,282 Running command python setup.py clean 2025-09-09T05:10:15,825 /tmp/pip-wheel-8cle7bhc/lightdock_ae02b29d04ae4adb935f33abd95522b0/setup.py:3: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-09-09T05:10:15,826 !! 2025-09-09T05:10:15,826 ******************************************************************************** 2025-09-09T05:10:15,826 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-09-09T05:10:15,826 This deprecation is overdue, please update your project and remove deprecated 2025-09-09T05:10:15,826 calls to avoid build errors in the future. 2025-09-09T05:10:15,826 ******************************************************************************** 2025-09-09T05:10:15,826 !! 2025-09-09T05:10:15,827 from setuptools.command.test import test as TestCommand 2025-09-09T05:10:16,170 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T05:10:16,170 !! 2025-09-09T05:10:16,170 ******************************************************************************** 2025-09-09T05:10:16,170 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T05:10:16,171 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T05:10:16,171 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T05:10:16,171 or your builds will no longer be supported. 2025-09-09T05:10:16,171 ******************************************************************************** 2025-09-09T05:10:16,171 !! 2025-09-09T05:10:16,171 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T05:10:17,023 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T05:10:17,023 !! 2025-09-09T05:10:17,023 ******************************************************************************** 2025-09-09T05:10:17,024 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T05:10:17,024 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-09T05:10:17,024 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T05:10:17,024 ******************************************************************************** 2025-09-09T05:10:17,024 !! 2025-09-09T05:10:17,024 self._finalize_license_expression() 2025-09-09T05:10:17,100 running clean 2025-09-09T05:10:17,250 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T05:10:17,250 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T05:10:17,337 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T05:10:17,337 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T05:10:17,337 removing 'build' 2025-09-09T05:10:17,476 Failed to build lightdock 2025-09-09T05:10:17,477 ERROR: Failed to build one or more wheels 2025-09-09T05:10:17,478 Exception information: 2025-09-09T05:10:17,478 Traceback (most recent call last): 2025-09-09T05:10:17,478 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T05:10:17,478 status = _inner_run() 2025-09-09T05:10:17,478 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T05:10:17,478 return self.run(options, args) 2025-09-09T05:10:17,478 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T05:10:17,478 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T05:10:17,478 return func(self, options, args) 2025-09-09T05:10:17,478 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T05:10:17,478 raise CommandError("Failed to build one or more wheels") 2025-09-09T05:10:17,478 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T05:10:17,482 Removed build tracker: '/tmp/pip-build-tracker-v0pzf1_1'