2025-09-09T05:42:18,026 Created temporary directory: /tmp/pip-build-tracker-t0vw4ewk
2025-09-09T05:42:18,027 Initialized build tracking at /tmp/pip-build-tracker-t0vw4ewk
2025-09-09T05:42:18,027 Created build tracker: /tmp/pip-build-tracker-t0vw4ewk
2025-09-09T05:42:18,027 Entered build tracker: /tmp/pip-build-tracker-t0vw4ewk
2025-09-09T05:42:18,028 Created temporary directory: /tmp/pip-wheel-995i3x1p
2025-09-09T05:42:18,031 Created temporary directory: /tmp/pip-ephem-wheel-cache-r6h32llz
2025-09-09T05:42:18,089 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-09T05:42:18,091 2 location(s) to search for versions of adaptivepele:
2025-09-09T05:42:18,091 * https://pypi.org/simple/adaptivepele/
2025-09-09T05:42:18,091 * https://www.piwheels.org/simple/adaptivepele/
2025-09-09T05:42:18,092 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2025-09-09T05:42:18,092 Getting page https://pypi.org/simple/adaptivepele/
2025-09-09T05:42:18,093 Found index url https://pypi.org/simple/
2025-09-09T05:42:18,298 Fetched page https://pypi.org/simple/adaptivepele/ as application/vnd.pypi.simple.v1+json
2025-09-09T05:42:18,301   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2025-09-09T05:42:18,302   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2025-09-09T05:42:18,302   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6
2025-09-09T05:42:18,303   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2025-09-09T05:42:18,303   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2025-09-09T05:42:18,304   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7
2025-09-09T05:42:18,304   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2025-09-09T05:42:18,305   Found link https://files.pythonhosted.org/packages/d2/2a/993f92a15fee18f51f48793e865e2626d51c441ba7ec4565480fad4391d6/AdaptivePELE-1.7.4.tar.gz (from https://pypi.org/simple/adaptivepele/), version: 1.7.4
2025-09-09T05:42:18,305 Fetching project page and analyzing links: https://www.piwheels.org/simple/adaptivepele/
2025-09-09T05:42:18,306 Getting page https://www.piwheels.org/simple/adaptivepele/
2025-09-09T05:42:18,308 Found index url https://www.piwheels.org/simple/
2025-09-09T05:42:18,402 Fetched page https://www.piwheels.org/simple/adaptivepele/ as text/html
2025-09-09T05:42:18,411   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp311-cp311-linux_armv6l.whl#sha256=8322937309a7efabf90fbc15d3d59ca9db71870cd9bb872bc4fefc2548447801 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,411   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp311-cp311-linux_armv7l.whl#sha256=8322937309a7efabf90fbc15d3d59ca9db71870cd9bb872bc4fefc2548447801 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,411   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp37-cp37m-linux_armv6l.whl#sha256=92d2fd2578aa02d8403fcd8ad2120883c524e2bce2be63df388ea24ad74eefd4 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,411   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp37-cp37m-linux_armv7l.whl#sha256=92d2fd2578aa02d8403fcd8ad2120883c524e2bce2be63df388ea24ad74eefd4 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp39-cp39-linux_armv6l.whl#sha256=6b765ee382a855a7704db9039fae9a5d842fcce59a92087f71b40dc636ca1fe8 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.4-cp39-cp39-linux_armv7l.whl#sha256=6b765ee382a855a7704db9039fae9a5d842fcce59a92087f71b40dc636ca1fe8 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp37-cp37m-linux_armv6l.whl#sha256=3292b60b31353aeff2e1832f504c186c202729cba0948d5ed44a194fab7eb63d (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp37-cp37m-linux_armv7l.whl#sha256=3292b60b31353aeff2e1832f504c186c202729cba0948d5ed44a194fab7eb63d (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp35-cp35m-linux_armv6l.whl#sha256=0208e16fec704fe2c144f233c3bcad9bd699844776c4d69a84cbeea650e527cf (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp35-cp35m-linux_armv7l.whl#sha256=0208e16fec704fe2c144f233c3bcad9bd699844776c4d69a84cbeea650e527cf (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,412   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp39-cp39-linux_armv6l.whl#sha256=8ba47dab67ab6fbd1e1bd022bdee1d4de408ec335fecc88108e7a3d295f378e9 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7.1-cp39-cp39-linux_armv7l.whl#sha256=8ba47dab67ab6fbd1e1bd022bdee1d4de408ec335fecc88108e7a3d295f378e9 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7-cp35-cp35m-linux_armv6l.whl#sha256=68bfb28f19f03bbd0d90143f2e191708ad9d2541088ece0035c08b89001d3f02 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7-cp35-cp35m-linux_armv7l.whl#sha256=68bfb28f19f03bbd0d90143f2e191708ad9d2541088ece0035c08b89001d3f02 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7-cp37-cp37m-linux_armv6l.whl#sha256=9ceafd1bdad9148abd951ec26b53c062af8565c6ed7df8a4833b0a5b1af150b6 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.7-cp37-cp37m-linux_armv7l.whl#sha256=9ceafd1bdad9148abd951ec26b53c062af8565c6ed7df8a4833b0a5b1af150b6 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp37-cp37m-linux_armv6l.whl#sha256=fc72f5016a0826fbe3b3a251f574c128cfffc1e1080f6ef21d32ae9134214087 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,413   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp37-cp37m-linux_armv7l.whl#sha256=fc72f5016a0826fbe3b3a251f574c128cfffc1e1080f6ef21d32ae9134214087 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp35-cp35m-linux_armv6l.whl#sha256=843a4ba6b03c34f08d3926f9c672ffecbe27f2d3a031f4e04cfba5ab92bf081b (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.3-cp35-cp35m-linux_armv7l.whl#sha256=843a4ba6b03c34f08d3926f9c672ffecbe27f2d3a031f4e04cfba5ab92bf081b (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp34-cp34m-linux_armv7l.whl#sha256=4f4aaf9237f2698965935feac86131663c03ebcf1f93aec451b35f8ce80d4c09 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp34-cp34m-linux_armv6l.whl#sha256=4f4aaf9237f2698965935feac86131663c03ebcf1f93aec451b35f8ce80d4c09 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp35-cp35m-linux_armv7l.whl#sha256=36de6189a08732016ffd1c173924fa40f32b8ff581b3fe9ef9593c21a09c2a1e (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,414   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp35-cp35m-linux_armv6l.whl#sha256=36de6189a08732016ffd1c173924fa40f32b8ff581b3fe9ef9593c21a09c2a1e (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp37-cp37m-linux_armv7l.whl#sha256=a444a2d3065cfad76489b3dff07638244e394ee86317ad4f9f738963ae9412e1 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6.2-cp37-cp37m-linux_armv6l.whl#sha256=a444a2d3065cfad76489b3dff07638244e394ee86317ad4f9f738963ae9412e1 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6-cp34-cp34m-linux_armv7l.whl#sha256=bb8b9f8f462d1c73c4a799c01c4e9913f7f3047d5b536180b305caaaa283e0d8 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6-cp34-cp34m-linux_armv6l.whl#sha256=bb8b9f8f462d1c73c4a799c01c4e9913f7f3047d5b536180b305caaaa283e0d8 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6-cp35-cp35m-linux_armv7l.whl#sha256=be4d1c98b4b7053819231567db9e10f930245d5dbcd03c764cfedc72479568ae (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.6-cp35-cp35m-linux_armv6l.whl#sha256=be4d1c98b4b7053819231567db9e10f930245d5dbcd03c764cfedc72479568ae (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,415   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.2-cp34-cp34m-linux_armv7l.whl#sha256=803d5b49a0992dd6aab76657a4fd7da709ba29ae19ef407b3c263abcfa9cef71 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.2-cp34-cp34m-linux_armv6l.whl#sha256=803d5b49a0992dd6aab76657a4fd7da709ba29ae19ef407b3c263abcfa9cef71 (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.2-cp35-cp35m-linux_armv6l.whl#sha256=7bee2048d0a5a4bf74907584a5db700ec2fe7aa35a7682a87c05ad5e92d00c5f (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.2-cp35-cp35m-linux_armv7l.whl#sha256=7bee2048d0a5a4bf74907584a5db700ec2fe7aa35a7682a87c05ad5e92d00c5f (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp35-cp35m-linux_armv7l.whl#sha256=11454cd28dbb1fac72eedb48155487d4e6a36fe5bf4ba70d1df2f81984690f5f (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp35-cp35m-linux_armv6l.whl#sha256=11454cd28dbb1fac72eedb48155487d4e6a36fe5bf4ba70d1df2f81984690f5f (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp34-cp34m-linux_armv6l.whl#sha256=ae482fbe798dddf382cbba7468496c022b12752804d218c198b78c1183e5342a (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,416   Skipping link: No binaries permitted for adaptivepele: https://archive1.piwheels.org/simple/adaptivepele/AdaptivePELE-1.5.1-cp34-cp34m-linux_armv7l.whl#sha256=ae482fbe798dddf382cbba7468496c022b12752804d218c198b78c1183e5342a (from https://www.piwheels.org/simple/adaptivepele/)
2025-09-09T05:42:18,417 Skipping link: not a file: https://www.piwheels.org/simple/adaptivepele/
2025-09-09T05:42:18,417 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2025-09-09T05:42:18,441 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2025-09-09T05:42:18,442 Collecting adaptivepele==1.6.3
2025-09-09T05:42:18,444   Created temporary directory: /tmp/pip-unpack-1xdokfl9
2025-09-09T05:42:18,592   Downloading AdaptivePELE-1.6.3.tar.gz (7.3 MB)
2025-09-09T05:42:20,231   Added adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-t0vw4ewk'
2025-09-09T05:42:20,232   Running setup.py (path:/tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00/setup.py) egg_info for package adaptivepele
2025-09-09T05:42:20,232   Created temporary directory: /tmp/pip-pip-egg-info-k0dv2oxr
2025-09-09T05:42:20,233   Preparing metadata (setup.py): started
2025-09-09T05:42:20,233   Running command python setup.py egg_info
2025-09-09T05:42:21,328   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-09T05:42:21,534   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T05:42:21,534   !!

2025-09-09T05:42:21,534           ********************************************************************************
2025-09-09T05:42:21,534           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T05:42:21,535           License :: OSI Approved :: MIT License

2025-09-09T05:42:21,535           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T05:42:21,535           ********************************************************************************

2025-09-09T05:42:21,535   !!
2025-09-09T05:42:21,535     self._finalize_license_expression()
2025-09-09T05:42:21,609   running egg_info
2025-09-09T05:42:21,683   creating /tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info
2025-09-09T05:42:21,683   writing /tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/PKG-INFO
2025-09-09T05:42:21,685   writing dependency_links to /tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/dependency_links.txt
2025-09-09T05:42:21,685   writing requirements to /tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/requires.txt
2025-09-09T05:42:21,686   writing top-level names to /tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/top_level.txt
2025-09-09T05:42:21,686   writing manifest file '/tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/SOURCES.txt'
2025-09-09T05:42:21,975   reading manifest file '/tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/SOURCES.txt'
2025-09-09T05:42:21,975   reading manifest template 'MANIFEST.in'
2025-09-09T05:42:21,989   writing manifest file '/tmp/pip-pip-egg-info-k0dv2oxr/AdaptivePELE.egg-info/SOURCES.txt'
2025-09-09T05:42:22,128   Preparing metadata (setup.py): finished with status 'done'
2025-09-09T05:42:22,133   Source in /tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00 has version 1.6.3, which satisfies requirement adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz
2025-09-09T05:42:22,133   Removed adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-t0vw4ewk'
2025-09-09T05:42:22,137 Created temporary directory: /tmp/pip-unpack-k2qgb8x5
2025-09-09T05:42:22,138 Created temporary directory: /tmp/pip-unpack-pz5ztk5y
2025-09-09T05:42:22,138 Building wheels for collected packages: adaptivepele
2025-09-09T05:42:22,139   Created temporary directory: /tmp/pip-wheel-kbwu3xu3
2025-09-09T05:42:22,139   DEPRECATION: Building 'adaptivepele' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'adaptivepele'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-09T05:42:22,140   Building wheel for adaptivepele (setup.py): started
2025-09-09T05:42:22,141   Destination directory: /tmp/pip-wheel-kbwu3xu3
2025-09-09T05:42:22,141   Running command python setup.py bdist_wheel
2025-09-09T05:42:23,215   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-09T05:42:23,429   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T05:42:23,429   !!

2025-09-09T05:42:23,429           ********************************************************************************
2025-09-09T05:42:23,429           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T05:42:23,430           License :: OSI Approved :: MIT License

2025-09-09T05:42:23,430           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T05:42:23,430           ********************************************************************************

2025-09-09T05:42:23,430   !!
2025-09-09T05:42:23,430     self._finalize_license_expression()
2025-09-09T05:42:23,430   running bdist_wheel
2025-09-09T05:42:23,725   running build
2025-09-09T05:42:23,725   running build_py
2025-09-09T05:42:23,802   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,803   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,803   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,804   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,804   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,805   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE
2025-09-09T05:42:23,806   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator
2025-09-09T05:42:23,806   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator
2025-09-09T05:42:23,807   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator
2025-09-09T05:42:23,807   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/validator
2025-09-09T05:42:23,808   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,808   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,809   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,810   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,810   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,811   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,811   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,812   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/utilities
2025-09-09T05:42:23,813   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,813   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,813   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,814   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,814   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,815   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,815   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,816   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,816   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,817   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,818   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/tests
2025-09-09T05:42:23,819   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,819   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,819   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,820   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,821   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,821   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/spawning
2025-09-09T05:42:23,822   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation
2025-09-09T05:42:23,822   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation
2025-09-09T05:42:23,823   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation
2025-09-09T05:42:23,823   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation
2025-09-09T05:42:23,824   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/simulation
2025-09-09T05:42:23,825   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,825   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,826   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,826   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,827   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,827   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,828   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,828   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,829   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,830   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,830   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,831   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,831   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,832   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,832   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,833   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,833   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,834   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,834   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/freeEnergies
2025-09-09T05:42:23,835   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants
2025-09-09T05:42:23,835   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants
2025-09-09T05:42:23,836   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants
2025-09-09T05:42:23,836   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants
2025-09-09T05:42:23,837   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/constants
2025-09-09T05:42:23,837   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,838   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,838   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,839   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,839   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,840   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/clustering
2025-09-09T05:42:23,841   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset
2025-09-09T05:42:23,841   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset
2025-09-09T05:42:23,842   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/atomset
2025-09-09T05:42:23,843   creating build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,843   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,844   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,844   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,845   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,845   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,846   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,846   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,847   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,847   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,848   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,848   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,849   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,849   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,850   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,851   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,851   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,852   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,852   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,853   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,853   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,854   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,854   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,855   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,855   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,856   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,856   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,857   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,857   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,858   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,858   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,859   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,859   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,859   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,860   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,860   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,861   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,862   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,862   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,863   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,863   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,864   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,864   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,865   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,865   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,866   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,866   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/AdaptivePELE/analysis
2025-09-09T05:42:23,875   running build_ext
2025-09-09T05:42:24,375   Compiling AdaptivePELE/atomset/atomset.pyx because it changed.
2025-09-09T05:42:24,375   [1/1] Cythonizing AdaptivePELE/atomset/atomset.pyx

2025-09-09T05:42:25,341   Error compiling Cython file:
2025-09-09T05:42:25,341   ------------------------------------------------------------
2025-09-09T05:42:25,341   ...

2025-09-09T05:42:25,341       def printAtom(self):
2025-09-09T05:42:25,341           """
2025-09-09T05:42:25,341               Print Atom information
2025-09-09T05:42:25,341           """
2025-09-09T05:42:25,341           print self.atomSerial, self.name, self.resname, self.resChain, self.resnum, self.x, self.y, self.z, self.type, self.mass
2025-09-09T05:42:25,341                 ^
2025-09-09T05:42:25,342   ------------------------------------------------------------

2025-09-09T05:42:25,342   AdaptivePELE/atomset/atomset.pyx:350:14: Syntax error in simple statement list
2025-09-09T05:42:25,354   Traceback (most recent call last):
2025-09-09T05:42:25,362     File "<string>", line 2, in <module>
2025-09-09T05:42:25,362       exec(compile('''
2025-09-09T05:42:25,362       ~~~~^^^^^^^^^^^^
2025-09-09T05:42:25,362       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-09T05:42:25,363       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T05:42:25,363       ...<32 lines>...
2025-09-09T05:42:25,363       exec(compile(setup_py_code, filename, "exec"))
2025-09-09T05:42:25,363       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T05:42:25,363       ''' % ('/tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-09T05:42:25,363       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T05:42:25,363     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-09T05:42:25,363     File "/tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00/setup.py", line 53, in <module>
2025-09-09T05:42:25,364       setup(
2025-09-09T05:42:25,364       ~~~~~^
2025-09-09T05:42:25,364           name="AdaptivePELE",
2025-09-09T05:42:25,364           ^^^^^^^^^^^^^^^^^^^^
2025-09-09T05:42:25,364       ...<24 lines>...
2025-09-09T05:42:25,364       },
2025-09-09T05:42:25,364       ^^
2025-09-09T05:42:25,365       )
2025-09-09T05:42:25,365       ^
2025-09-09T05:42:25,365     File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-09T05:42:25,365       return distutils.core.setup(**attrs)
2025-09-09T05:42:25,365              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,365     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-09T05:42:25,365       return run_commands(dist)
2025-09-09T05:42:25,365     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-09T05:42:25,365       dist.run_commands()
2025-09-09T05:42:25,366       ~~~~~~~~~~~~~~~~~^^
2025-09-09T05:42:25,366     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-09T05:42:25,366       self.run_command(cmd)
2025-09-09T05:42:25,366       ~~~~~~~~~~~~~~~~^^^^^
2025-09-09T05:42:25,366     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T05:42:25,366       super().run_command(command)
2025-09-09T05:42:25,366       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,366     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T05:42:25,366       cmd_obj.run()
2025-09-09T05:42:25,366       ~~~~~~~~~~~^^
2025-09-09T05:42:25,367     File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-09T05:42:25,367       self.run_command("build")
2025-09-09T05:42:25,367       ~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,367     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-09T05:42:25,367       self.distribution.run_command(command)
2025-09-09T05:42:25,368       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,368     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T05:42:25,368       super().run_command(command)
2025-09-09T05:42:25,368       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,368     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T05:42:25,368       cmd_obj.run()
2025-09-09T05:42:25,368       ~~~~~~~~~~~^^
2025-09-09T05:42:25,369     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-09T05:42:25,369       self.run_command(cmd_name)
2025-09-09T05:42:25,369       ~~~~~~~~~~~~~~~~^^^^^^^^^^
2025-09-09T05:42:25,369     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-09T05:42:25,369       self.distribution.run_command(command)
2025-09-09T05:42:25,369       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,369     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-09T05:42:25,370       super().run_command(command)
2025-09-09T05:42:25,370       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-09T05:42:25,370     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-09T05:42:25,370       cmd_obj.run()
2025-09-09T05:42:25,370       ~~~~~~~~~~~^^
2025-09-09T05:42:25,370     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run
2025-09-09T05:42:25,370       self.build_extensions()
2025-09-09T05:42:25,370       ~~~~~~~~~~~~~~~~~~~~~^^
2025-09-09T05:42:25,371     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions
2025-09-09T05:42:25,371       self._build_extensions_serial()
2025-09-09T05:42:25,371       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-09T05:42:25,371     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial
2025-09-09T05:42:25,371       self.build_extension(ext)
2025-09-09T05:42:25,371       ~~~~~~~~~~~~~~~~~~~~^^^^^
2025-09-09T05:42:25,371     File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension
2025-09-09T05:42:25,372       new_ext = cythonize(
2025-09-09T05:42:25,372                 ~~~~~~~~~^
2025-09-09T05:42:25,372           ext,force=self.force, quiet=self.verbose == 0, **options
2025-09-09T05:42:25,372           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-09T05:42:25,372       )[0]
2025-09-09T05:42:25,372       ^
2025-09-09T05:42:25,372     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
2025-09-09T05:42:25,373       cythonize_one(*args)
2025-09-09T05:42:25,373       ~~~~~~~~~~~~~^^^^^^^
2025-09-09T05:42:25,373     File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one
2025-09-09T05:42:25,373       raise CompileError(None, pyx_file)
2025-09-09T05:42:25,373   Cython.Compiler.Errors.CompileError: AdaptivePELE/atomset/atomset.pyx
2025-09-09T05:42:25,644   ERROR: python setup.py bdist_wheel exited with 1
2025-09-09T05:42:25,656   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-09T05:42:25,656   exec(compile('"'"''"'"''"'"'
2025-09-09T05:42:25,656   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-09T05:42:25,656   #
2025-09-09T05:42:25,656   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-09T05:42:25,656   #   import from `distutils.core` to work with newer packaging standards.
2025-09-09T05:42:25,656   # - It provides a clear error message when setuptools is not installed.
2025-09-09T05:42:25,656   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-09T05:42:25,656   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-09T05:42:25,656   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-09T05:42:25,656   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-09T05:42:25,656   import os, sys, tokenize, traceback
2025-09-09T05:42:25,656   
2025-09-09T05:42:25,656   try:
2025-09-09T05:42:25,656       import setuptools
2025-09-09T05:42:25,656   except ImportError:
2025-09-09T05:42:25,656       print(
2025-09-09T05:42:25,656           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-09T05:42:25,656           "the build environment with exception:",
2025-09-09T05:42:25,656           file=sys.stderr,
2025-09-09T05:42:25,656       )
2025-09-09T05:42:25,656       traceback.print_exc()
2025-09-09T05:42:25,656       sys.exit(1)
2025-09-09T05:42:25,656   
2025-09-09T05:42:25,656   __file__ = %r
2025-09-09T05:42:25,656   sys.argv[0] = __file__
2025-09-09T05:42:25,656   
2025-09-09T05:42:25,656   if os.path.exists(__file__):
2025-09-09T05:42:25,656       filename = __file__
2025-09-09T05:42:25,656       with tokenize.open(__file__) as f:
2025-09-09T05:42:25,656           setup_py_code = f.read()
2025-09-09T05:42:25,656   else:
2025-09-09T05:42:25,656       filename = "<auto-generated setuptools caller>"
2025-09-09T05:42:25,656       setup_py_code = "from setuptools import setup; setup()"
2025-09-09T05:42:25,656   
2025-09-09T05:42:25,656   exec(compile(setup_py_code, filename, "exec"))
2025-09-09T05:42:25,656   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-kbwu3xu3[/]
2025-09-09T05:42:25,657   [bold magenta]cwd[/]: /tmp/pip-wheel-995i3x1p/adaptivepele_c018a488a38542e999d4844cd3a25f00/
2025-09-09T05:42:25,657   Building wheel for adaptivepele (setup.py): finished with status 'error'
2025-09-09T05:42:25,658   ERROR: Failed building wheel for adaptivepele
2025-09-09T05:42:25,658   Running setup.py clean for adaptivepele
2025-09-09T05:42:25,659   Running command python setup.py clean
2025-09-09T05:42:26,738   Warning: 'classifiers' should be a list, got type 'tuple'
2025-09-09T05:42:26,944   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-09T05:42:26,944   !!

2025-09-09T05:42:26,944           ********************************************************************************
2025-09-09T05:42:26,945           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-09T05:42:26,945           License :: OSI Approved :: MIT License

2025-09-09T05:42:26,945           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-09T05:42:26,945           ********************************************************************************

2025-09-09T05:42:26,945   !!
2025-09-09T05:42:26,945     self._finalize_license_expression()
2025-09-09T05:42:27,019   running clean
2025-09-09T05:42:27,162   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-09T05:42:27,167   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-09T05:42:27,167   'build/scripts-3.13' does not exist -- can't clean it
2025-09-09T05:42:27,167   removing 'build'
2025-09-09T05:42:27,305 Failed to build adaptivepele
2025-09-09T05:42:27,306 ERROR: Failed to build one or more wheels
2025-09-09T05:42:27,307 Exception information:
2025-09-09T05:42:27,307 Traceback (most recent call last):
2025-09-09T05:42:27,307   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-09T05:42:27,307     status = _inner_run()
2025-09-09T05:42:27,307   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-09T05:42:27,307     return self.run(options, args)
2025-09-09T05:42:27,307            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-09T05:42:27,307   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-09T05:42:27,307     return func(self, options, args)
2025-09-09T05:42:27,307   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-09T05:42:27,307     raise CommandError("Failed to build one or more wheels")
2025-09-09T05:42:27,307 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-09T05:42:27,311 Removed build tracker: '/tmp/pip-build-tracker-t0vw4ewk'