2025-09-09T07:00:09,736 Created temporary directory: /tmp/pip-build-tracker-0gjfjbb2 2025-09-09T07:00:09,737 Initialized build tracking at /tmp/pip-build-tracker-0gjfjbb2 2025-09-09T07:00:09,737 Created build tracker: /tmp/pip-build-tracker-0gjfjbb2 2025-09-09T07:00:09,737 Entered build tracker: /tmp/pip-build-tracker-0gjfjbb2 2025-09-09T07:00:09,737 Created temporary directory: /tmp/pip-wheel-0g39lj4r 2025-09-09T07:00:09,741 Created temporary directory: /tmp/pip-ephem-wheel-cache-1o35jrsj 2025-09-09T07:00:09,798 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T07:00:09,801 2 location(s) to search for versions of wwpdb-utils-align: 2025-09-09T07:00:09,801 * https://pypi.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,801 * https://www.piwheels.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,801 Fetching project page and analyzing links: https://pypi.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,801 Getting page https://pypi.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,802 Found index url https://pypi.org/simple/ 2025-09-09T07:00:09,872 Fetched page https://pypi.org/simple/wwpdb-utils-align/ as application/vnd.pypi.simple.v1+json 2025-09-09T07:00:09,879 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/1d/a8/d3ad903296b72c5f03757660b34de9d74cad8a12250d69ccd6bf84c041db/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,879 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/b9/a5/c318a98f0700364ef2a8b8555676e1a8eda80a0d58296c7e6de6c873e1f0/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,879 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/7f/d7/ae5e2f0cbd80c442e6af6451e4d680d248088c3a623f733bbfeef1e31ae0/wwpdb.utils.align-0.10-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,880 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/49/0d/795e27fb08a7c7f8a34672da6b4a8164ad8d62956d920bf758f45dd9f41e/wwpdb.utils.align-0.10-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,880 Found link https://files.pythonhosted.org/packages/25/52/f224d04f128b12c37559d523f5e11dc561b28d4c1fec7853c94cd4377bb2/wwpdb.utils.align-0.10.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.10 2025-09-09T07:00:09,880 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3a/ae/32a9cd447324404c88c9207e4b62f224bb7840267cfced51493ae0b3d59b/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,880 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/84/79/cab96cf67ab9c0d3d8ce96d53478dca7b2bbe55540ff19c08861b2a6b6c4/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,880 Found link https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11 2025-09-09T07:00:09,880 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/6c/d1/b93a4246b5a1f02fb222bfe5813b0a82f43527255ccd23cfd1081dba83bb/wwpdb.utils.align-0.11.1-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,881 Found link https://files.pythonhosted.org/packages/78/be/2a83166158e9100dffabf3da0bb67f0ddc3b480497ce96a11b1f02686a0d/wwpdb.utils.align-0.11.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.1 2025-09-09T07:00:09,881 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/93/65/44b1fd0ecae22a993f50d031d9d6a8a0d7118ebfd7967a4f5d2f40bad6b6/wwpdb.utils.align-0.11.2-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,881 Found link https://files.pythonhosted.org/packages/f3/35/58b7f11238cba57e152e5c536f770d29799cfed22a601b9a422d5d2fa296/wwpdb.utils.align-0.11.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.2 2025-09-09T07:00:09,881 Found link https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.3 2025-09-09T07:00:09,881 Found link https://files.pythonhosted.org/packages/72/f1/dbf1d3d7ce579ebfe697e9bf39915fdad652cfef8f577ab473bbb18638a9/wwpdb.utils.align-0.11.4.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.4 2025-09-09T07:00:09,882 Found link https://files.pythonhosted.org/packages/9d/36/1f149c592a06771cbbc5d4771652c846779fcf24505a368eb515e95a80d3/wwpdb.utils.align-0.11.5.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.5 2025-09-09T07:00:09,882 Found link https://files.pythonhosted.org/packages/49/df/5765e4b24261ffc979047cf35455c4d0ef530282f3a213e3ec8cf7c3c040/wwpdb.utils.align-0.11.6.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.6 2025-09-09T07:00:09,882 Found link https://files.pythonhosted.org/packages/5f/08/24b0c37005525ec0e373dc7da32712f8f04ab3a46d56d5a19d49a7ba53bb/wwpdb.utils.align-0.11.7.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.7 2025-09-09T07:00:09,882 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/29/ce/1e05c87b10315ea2d64b4fcfb33810c85db2b490ed3d41cb0d6c528f9eeb/wwpdb.utils.align-0.11.8-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,882 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/82/e4/0bfb8df5fd05815c05105d32f2e3cccc89de175f380613481d355975accc/wwpdb.utils.align-0.11.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/19/7f/9534a6e81c9d1480ac2caac70afe4fbaf02309f787da7226f250aeb58ac0/wwpdb.utils.align-0.11.8-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3e/c3/22dde386ec10cadad932e7bd871000f393809c40e68bfe66c41c6f605bf3/wwpdb.utils.align-0.11.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/97/e2/f8b0023559eec8a84ff34b603a4be0129f34beef665a332133ef75ea54c0/wwpdb.utils.align-0.11.8-cp36-cp36m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/fd/ed/7cc363e7f708d2ae64445e285761e6926d379fc582a8be9f2f8bcfe74221/wwpdb.utils.align-0.11.8-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/e6/2c/188184a061b28454fa8d0d1009f0e3981bdc9308c7f6a73276a6a09e85fb/wwpdb.utils.align-0.11.8-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/96/99/78e9359cef7626e90a6c575eb16e173e3162b60e2e351d57c7c424ddc6f5/wwpdb.utils.align-0.11.8-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,883 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3b/5a/f0c50de7e1f13c582c2b7661c19c041480925e2cf5576981845221a2acf1/wwpdb.utils.align-0.11.8-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,884 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/46/f6/06a416b00274f272397f3473a626abc2bbf63dc9d3a3ce66e9c948c7efa1/wwpdb.utils.align-0.11.8-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,884 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/2f/05/4659523618f28a5067f8d3c029c7fc253af729ca1b98456bdef0ae79b8f0/wwpdb.utils.align-0.11.8-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,884 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/0f/f0/4c765cd6c29d25d14be4e26ee7a35bd5216715458211a3db761877fe50ba/wwpdb.utils.align-0.11.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,884 Found link https://files.pythonhosted.org/packages/95/4a/55d94a324b64b84557b1107cf9f307932886ce0bf7844702eaa4288dcb97/wwpdb.utils.align-0.11.8.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.6), version: 0.11.8 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/41/5f/97842028f09f8574c515679a745d7174446d9f73ac2967a6a21d610505c7/wwpdb_utils_align-0.12.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/c0/b6/36135f96e0de38a4643ee594dee9223a99586307ef5bb7c859a43a8c3aa1/wwpdb_utils_align-0.12.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/7c/23/abd42b185df8b0b260f7f89e2cafd0c7645df6fbb140f92f2ac06489bd80/wwpdb_utils_align-0.12.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/b3/13/a21b88f3450467ea3ffc74427a1b6dc9086f0bcf7d6aa06321608b3da13a/wwpdb_utils_align-0.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/76/7d/1d4bd5ace524648f4843ddd693eea8a2cac8537927a4fcd89cbbdb545b67/wwpdb_utils_align-0.12.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,885 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/d4/1b/31affe9e44af2cc120ec5777a538e511d9298f6a2a39032acd9fdb82cf6a/wwpdb_utils_align-0.12.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3c/37/bcd1491a242c8f6536198230801c7632acda0642b18ad839f857bded43b7/wwpdb_utils_align-0.12.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/ce/45/422506af947a64e1a01b6294075112aa27157ee7a368b7b8676d3fbfe294/wwpdb_utils_align-0.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/91/a2/ec04c58c542b46feb24a87d98229022a527d39364fda33890c7b4118e5a3/wwpdb_utils_align-0.12.0-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/af/a6/6a01c0572078dda7e5b4f2858f1c3437f92f6ecdda9f19264784ca4f2f61/wwpdb_utils_align-0.12.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/24/06/a7369429c5c421e574a4eca343dca034d9395a84369dfc188e641a33809e/wwpdb_utils_align-0.12.0-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/5a/d1/0aa1406e69fbb80fbd56c3a48ef5febcb4e781d67f319a44b43446c92e5b/wwpdb_utils_align-0.12.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,886 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/28/0e/9b539e2bbd47d2401bc631703c6275110ec431935dbf4bb2d47a472df093/wwpdb_utils_align-0.12.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/a9/c4/7887028d8f8c84cec3c9c387321ea87a93fe7d64c6ab19fa4f4a17a5dc7c/wwpdb_utils_align-0.12.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/de/4c/d79fe9c9f07270dfe27086f44ad4d9012db1f8043486885d84e0982aac1e/wwpdb_utils_align-0.12.0-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/da/1e/adcb7f8fa5610816c8cb8a64bca041810251ba27c976dad0ce434d61d9fc/wwpdb_utils_align-0.12.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/82/47/3499f7b34613164ea04d251cd3a7585bb90b8e10992d5286cba6212d5ef0/wwpdb_utils_align-0.12.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/e0/61/dc57428cc9efabaec80fe6785b61ba1070cdf8b622be0ac32ee1d2e87c66/wwpdb_utils_align-0.12.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/f2/8e/dd63a82fffdb19e44d658bb3db9a3f5a64fb49b36ffd2c0a61f81f03a8cd/wwpdb_utils_align-0.12.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/a0/36/f5e9c37d027c3a00577e3da233ca9c914b2d21fd8d87b0ae75e820287562/wwpdb_utils_align-0.12.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,887 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/ae/c7/863246bab293f3a63997b8e21fcb0f802fce73f72c1aa98e6c741225fd0f/wwpdb_utils_align-0.12.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,888 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/6c/e5/a62d9571e229f82867d534b11e216cbf98a713754a2f82fac7c8899668de/wwpdb_utils_align-0.12.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,888 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/d9/08/0ced2b87c63f9de50db297f5f08c496e69e84292b79f0e071dd00cd0dfb5/wwpdb_utils_align-0.12.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,888 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/11/b1/918bdcd7b72076bfb10ebd397ea0e74331b76ca46843849c9f22e66ce168/wwpdb_utils_align-0.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,888 Found link https://files.pythonhosted.org/packages/80/2d/34f040d635d0a6701f3f483816d1da05b8218ccbdf84fc6799e00526dadd/wwpdb_utils_align-0.12.0.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/) (requires-python:>=3.8), version: 0.12.0 2025-09-09T07:00:09,889 Fetching project page and analyzing links: https://www.piwheels.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,889 Getting page https://www.piwheels.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:09,890 Found index url https://www.piwheels.org/simple/ 2025-09-09T07:00:09,982 Fetched page https://www.piwheels.org/simple/wwpdb-utils-align/ as text/html 2025-09-09T07:00:09,993 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb_utils_align-0.12.0-cp311-cp311-linux_armv6l.whl#sha256=080bc5e2404f1a8a996797dbd0150e91912fe9bb01ec2e615a85503d3486d27e (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb_utils_align-0.12.0-cp311-cp311-linux_armv7l.whl#sha256=080bc5e2404f1a8a996797dbd0150e91912fe9bb01ec2e615a85503d3486d27e (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.8) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp37-cp37m-linux_armv6l.whl#sha256=9a845869706dfb8e896e46208b90f35a729d1bbac8d8bd3cefd3cca15f6bf7e5 (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp37-cp37m-linux_armv7l.whl#sha256=9a845869706dfb8e896e46208b90f35a729d1bbac8d8bd3cefd3cca15f6bf7e5 (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp39-cp39-linux_armv6l.whl#sha256=b03bb410617da5bc05ef0b392c2ca62a75649ed950d91a085b06317aa2db6e9d (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp39-cp39-linux_armv7l.whl#sha256=b03bb410617da5bc05ef0b392c2ca62a75649ed950d91a085b06317aa2db6e9d (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp311-cp311-linux_armv6l.whl#sha256=a29c752d501ffbe2c30a210253a14d25ec5a31fa48aaafb76c74f16bdd38b330 (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,994 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.8-cp311-cp311-linux_armv7l.whl#sha256=a29c752d501ffbe2c30a210253a14d25ec5a31fa48aaafb76c74f16bdd38b330 (from https://www.piwheels.org/simple/wwpdb-utils-align/) (requires-python:>=3.6) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.7-cp37-cp37m-linux_armv6l.whl#sha256=6fc6150ff64b7b61655dab61e4c2ef19cea4d10a434a41af41bc84fbc08e1018 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.7-cp37-cp37m-linux_armv7l.whl#sha256=6fc6150ff64b7b61655dab61e4c2ef19cea4d10a434a41af41bc84fbc08e1018 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.7-cp39-cp39-linux_armv6l.whl#sha256=276a9e54c166c98ed5c74014b9e65f38466772dbc148a7b30912530546837d31 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.7-cp39-cp39-linux_armv7l.whl#sha256=276a9e54c166c98ed5c74014b9e65f38466772dbc148a7b30912530546837d31 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.6-cp37-cp37m-linux_armv6l.whl#sha256=5ad2e9da6bab9dfd2fb75d9007fb24efd4b8ccf8ae48605ec00972a8dbe94637 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.6-cp37-cp37m-linux_armv7l.whl#sha256=5ad2e9da6bab9dfd2fb75d9007fb24efd4b8ccf8ae48605ec00972a8dbe94637 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.6-cp39-cp39-linux_armv6l.whl#sha256=3aed18426a75c7f4f2795c6d07a4be17cef1ff912e1b5e5331e25149792bd0ce (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,995 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.6-cp39-cp39-linux_armv7l.whl#sha256=3aed18426a75c7f4f2795c6d07a4be17cef1ff912e1b5e5331e25149792bd0ce (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.5-cp39-cp39-linux_armv6l.whl#sha256=3c47ac5eb38b81d8bc9fe64715450e0ec51d5c149e7c14e05a30d6d1b6b997af (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.5-cp39-cp39-linux_armv7l.whl#sha256=3c47ac5eb38b81d8bc9fe64715450e0ec51d5c149e7c14e05a30d6d1b6b997af (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.5-cp37-cp37m-linux_armv6l.whl#sha256=18fe5f9a1baff3d091a2e69a5fc07eb9d0bb9c041decdf4b4c29764c67d936c1 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.5-cp37-cp37m-linux_armv7l.whl#sha256=18fe5f9a1baff3d091a2e69a5fc07eb9d0bb9c041decdf4b4c29764c67d936c1 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.4-cp37-cp37m-linux_armv6l.whl#sha256=35a954472d1a7ec2f30f9b64721dc9b6b389027ccbc80af32b651c01fd90b97a (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.4-cp37-cp37m-linux_armv7l.whl#sha256=35a954472d1a7ec2f30f9b64721dc9b6b389027ccbc80af32b651c01fd90b97a (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.4-cp39-cp39-linux_armv6l.whl#sha256=25e135007724f9563beaf8173241e61cd933eeacc39383e006ef07d8241c52d5 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,996 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.4-cp39-cp39-linux_armv7l.whl#sha256=25e135007724f9563beaf8173241e61cd933eeacc39383e006ef07d8241c52d5 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp37-cp37m-linux_armv6l.whl#sha256=cc0551c7fb1c3a128a2be475aec04407863f9f02ebe18ee237788f371b9a8e74 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp37-cp37m-linux_armv7l.whl#sha256=cc0551c7fb1c3a128a2be475aec04407863f9f02ebe18ee237788f371b9a8e74 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp39-cp39-linux_armv6l.whl#sha256=196d19cb25493a2aa18c302a46622255482c399dcc770f60ac81957881c46861 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp39-cp39-linux_armv7l.whl#sha256=196d19cb25493a2aa18c302a46622255482c399dcc770f60ac81957881c46861 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=a5fd0224e75b80df017d726e9ecfb930abaa3c40a738bc6a0deae086ddc2edd6 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=a5fd0224e75b80df017d726e9ecfb930abaa3c40a738bc6a0deae086ddc2edd6 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp39-cp39-linux_armv6l.whl#sha256=360a99b82a482a51a2658578fdd61f9fc5910cc5c4184b09a66ad2b5de1d7d36 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,997 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp39-cp39-linux_armv7l.whl#sha256=360a99b82a482a51a2658578fdd61f9fc5910cc5c4184b09a66ad2b5de1d7d36 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp37-cp37m-linux_armv6l.whl#sha256=72597662f3a66db03dbebf58cb5b0f53c7f4d4c2da1728c8d5548872a0bc3cc8 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp37-cp37m-linux_armv7l.whl#sha256=72597662f3a66db03dbebf58cb5b0f53c7f4d4c2da1728c8d5548872a0bc3cc8 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=77bd3f0063344c49a9dcb813f6fdac1aee511eecabe1050f2265a427b80ad1a1 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=77bd3f0063344c49a9dcb813f6fdac1aee511eecabe1050f2265a427b80ad1a1 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp37-cp37m-linux_armv6l.whl#sha256=6a018587422b026c6df0820a3128b564ccd17e5c1ca822a6ad8f1c55bb3eeacd (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp37-cp37m-linux_armv7l.whl#sha256=6a018587422b026c6df0820a3128b564ccd17e5c1ca822a6ad8f1c55bb3eeacd (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,998 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp39-cp39-linux_armv6l.whl#sha256=2e9ed7a1f8b30d3a773ceeca8e58b0ca665ac1c7248c7a6de9e5b3d9edd31d19 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.1-cp39-cp39-linux_armv7l.whl#sha256=2e9ed7a1f8b30d3a773ceeca8e58b0ca665ac1c7248c7a6de9e5b3d9edd31d19 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp35-cp35m-linux_armv6l.whl#sha256=3f2630f5ebf7f5d9862778e0fa1e5042b96a0a2a06adbc84d8d6beb6968088c9 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp35-cp35m-linux_armv7l.whl#sha256=3f2630f5ebf7f5d9862778e0fa1e5042b96a0a2a06adbc84d8d6beb6968088c9 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp37-cp37m-linux_armv6l.whl#sha256=e65ad4a6ad82d1e4905c284608c9732a727fcab01c38466a346e7c12dbc918d8 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp37-cp37m-linux_armv7l.whl#sha256=e65ad4a6ad82d1e4905c284608c9732a727fcab01c38466a346e7c12dbc918d8 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:09,999 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp39-cp39-linux_armv6l.whl#sha256=f7ddeb0afcfb089397aec18e9140691d3e575467e2a29f5e49bf1946143ea414 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11-cp39-cp39-linux_armv7l.whl#sha256=f7ddeb0afcfb089397aec18e9140691d3e575467e2a29f5e49bf1946143ea414 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp39-cp39-linux_armv6l.whl#sha256=81c22f07ee157ac44dcbc45396a046cfe4bee4e9b83fe896db81a44207ac3652 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp39-cp39-linux_armv7l.whl#sha256=81c22f07ee157ac44dcbc45396a046cfe4bee4e9b83fe896db81a44207ac3652 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp34-cp34m-linux_armv7l.whl#sha256=187aa2cc62cb9fc33666664df45110a8a9ea22bbb45ae35aa7dab2c181846c3e (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp34-cp34m-linux_armv6l.whl#sha256=187aa2cc62cb9fc33666664df45110a8a9ea22bbb45ae35aa7dab2c181846c3e (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp35-cp35m-linux_armv6l.whl#sha256=f1b32225cb7d430e9fea4c6247fbe4fecf95a881104e4b4039b6ff343b28269c (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,000 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp35-cp35m-linux_armv7l.whl#sha256=f1b32225cb7d430e9fea4c6247fbe4fecf95a881104e4b4039b6ff343b28269c (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,001 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv6l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,001 Skipping link: No binaries permitted for wwpdb-utils-align: https://archive1.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv7l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2025-09-09T07:00:10,001 Skipping link: not a file: https://www.piwheels.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:10,001 Skipping link: not a file: https://pypi.org/simple/wwpdb-utils-align/ 2025-09-09T07:00:10,027 Given no hashes to check 1 links for project 'wwpdb-utils-align': discarding no candidates 2025-09-09T07:00:10,028 Collecting wwpdb-utils-align==0.11 2025-09-09T07:00:10,029 Created temporary directory: /tmp/pip-unpack-qtxznsby 2025-09-09T07:00:10,171 Downloading wwpdb.utils.align-0.11.tar.gz (602 kB) 2025-09-09T07:00:10,408 Added wwpdb-utils-align==0.11 from https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz to build tracker '/tmp/pip-build-tracker-0gjfjbb2' 2025-09-09T07:00:10,409 Running setup.py (path:/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py) egg_info for package wwpdb-utils-align 2025-09-09T07:00:10,409 Created temporary directory: /tmp/pip-pip-egg-info-tr2i0ivn 2025-09-09T07:00:10,409 Preparing metadata (setup.py): started 2025-09-09T07:00:10,410 Running command python setup.py egg_info 2025-09-09T07:00:11,270 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-09T07:00:11,271 warnings.warn(msg) 2025-09-09T07:00:11,271 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-09T07:00:11,271 warnings.warn(msg) 2025-09-09T07:00:11,472 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T07:00:11,472 !! 2025-09-09T07:00:11,472 ******************************************************************************** 2025-09-09T07:00:11,472 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T07:00:11,472 License :: OSI Approved :: Apache Software License 2025-09-09T07:00:11,472 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T07:00:11,472 ******************************************************************************** 2025-09-09T07:00:11,473 !! 2025-09-09T07:00:11,473 self._finalize_license_expression() 2025-09-09T07:00:11,545 running egg_info 2025-09-09T07:00:11,619 creating /tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info 2025-09-09T07:00:11,619 writing /tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/PKG-INFO 2025-09-09T07:00:11,621 writing dependency_links to /tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/dependency_links.txt 2025-09-09T07:00:11,622 writing requirements to /tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/requires.txt 2025-09-09T07:00:11,623 writing top-level names to /tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/top_level.txt 2025-09-09T07:00:11,623 writing manifest file '/tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/SOURCES.txt' 2025-09-09T07:00:11,849 reading manifest file '/tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/SOURCES.txt' 2025-09-09T07:00:11,850 reading manifest template 'MANIFEST.in' 2025-09-09T07:00:11,864 writing manifest file '/tmp/pip-pip-egg-info-tr2i0ivn/wwpdb.utils.align.egg-info/SOURCES.txt' 2025-09-09T07:00:11,980 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T07:00:11,984 Source in /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7 has version 0.11, which satisfies requirement wwpdb-utils-align==0.11 from https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz 2025-09-09T07:00:11,984 Removed wwpdb-utils-align==0.11 from https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz from build tracker '/tmp/pip-build-tracker-0gjfjbb2' 2025-09-09T07:00:11,989 Created temporary directory: /tmp/pip-unpack-iis4rngu 2025-09-09T07:00:11,989 Created temporary directory: /tmp/pip-unpack-n5t64jg8 2025-09-09T07:00:11,989 Building wheels for collected packages: wwpdb-utils-align 2025-09-09T07:00:11,991 Created temporary directory: /tmp/pip-wheel-ve3uo3iw 2025-09-09T07:00:11,991 DEPRECATION: Building 'wwpdb-utils-align' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'wwpdb-utils-align'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T07:00:11,992 Building wheel for wwpdb-utils-align (setup.py): started 2025-09-09T07:00:11,993 Destination directory: /tmp/pip-wheel-ve3uo3iw 2025-09-09T07:00:11,993 Running command python setup.py bdist_wheel 2025-09-09T07:00:12,869 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-09T07:00:12,869 warnings.warn(msg) 2025-09-09T07:00:12,869 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-09T07:00:12,870 warnings.warn(msg) 2025-09-09T07:00:13,077 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T07:00:13,077 !! 2025-09-09T07:00:13,077 ******************************************************************************** 2025-09-09T07:00:13,077 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T07:00:13,077 License :: OSI Approved :: Apache Software License 2025-09-09T07:00:13,078 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T07:00:13,078 ******************************************************************************** 2025-09-09T07:00:13,078 !! 2025-09-09T07:00:13,078 self._finalize_license_expression() 2025-09-09T07:00:13,078 running bdist_wheel 2025-09-09T07:00:13,609 running build 2025-09-09T07:00:13,609 running build_py 2025-09-09T07:00:13,907 creating build/lib.linux-armv7l-cpython-313/wwpdb 2025-09-09T07:00:13,908 copying wwpdb/__init__.py -> build/lib.linux-armv7l-cpython-313/wwpdb 2025-09-09T07:00:13,910 creating build/lib.linux-armv7l-cpython-313/wwpdb/utils 2025-09-09T07:00:13,911 copying wwpdb/utils/__init__.py -> build/lib.linux-armv7l-cpython-313/wwpdb/utils 2025-09-09T07:00:13,912 creating build/lib.linux-armv7l-cpython-313/wwpdb/utils/align 2025-09-09T07:00:13,913 copying wwpdb/utils/align/SequenceExamples.py -> build/lib.linux-armv7l-cpython-313/wwpdb/utils/align 2025-09-09T07:00:13,915 copying wwpdb/utils/align/SequenceReferenceData.py -> build/lib.linux-armv7l-cpython-313/wwpdb/utils/align 2025-09-09T07:00:13,916 copying wwpdb/utils/align/__init__.py -> build/lib.linux-armv7l-cpython-313/wwpdb/utils/align 2025-09-09T07:00:13,925 running build_ext 2025-09-09T07:00:13,979 ------ WARNING could not locate python library 2025-09-09T07:00:13,981 ------------- setup.py ----------------- 2025-09-09T07:00:13,981 Extension source path /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7 2025-09-09T07:00:13,981 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/build/lib.linux-armv7l-cpython-313/wwpdb/utils/align', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DPYTHON_INCLUDE_DIR=/usr/include/python3.13', '-DCMAKE_BUILD_TYPE=Release'] 2025-09-09T07:00:13,981 self.build_temp build/temp.linux-armv7l-cpython-313 2025-09-09T07:00:13,981 extdir /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/build/lib.linux-armv7l-cpython-313/wwpdb/utils/align 2025-09-09T07:00:13,981 ext.name wwpdb.utils.align.alignlib 2025-09-09T07:00:13,981 sys.executable /usr/bin/python3 2025-09-09T07:00:13,982 sys.exec_prefix /usr 2025-09-09T07:00:13,982 CXXFLAGS -DVERSION_INFO=\"0.11\" 2025-09-09T07:00:14,028 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 2025-09-09T07:00:14,028 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-09T07:00:14,028 CMake. 2025-09-09T07:00:14,029 Update the VERSION argument value. Or, use the ... syntax 2025-09-09T07:00:14,029 to tell CMake that the project requires at least but has been updated 2025-09-09T07:00:14,029 to work with policies introduced by or earlier. 2025-09-09T07:00:14,314 -- The C compiler identification is GNU 14.2.0 2025-09-09T07:00:14,681 -- The CXX compiler identification is GNU 14.2.0 2025-09-09T07:00:14,729 -- Detecting C compiler ABI info 2025-09-09T07:00:15,151 -- Detecting C compiler ABI info - done 2025-09-09T07:00:15,227 -- Check for working C compiler: /usr/bin/cc - skipped 2025-09-09T07:00:15,229 -- Detecting C compile features 2025-09-09T07:00:15,231 -- Detecting C compile features - done 2025-09-09T07:00:15,306 -- Detecting CXX compiler ABI info 2025-09-09T07:00:15,787 -- Detecting CXX compiler ABI info - done 2025-09-09T07:00:15,866 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-09-09T07:00:15,867 -- Detecting CXX compile features 2025-09-09T07:00:15,871 -- Detecting CXX compile features - done 2025-09-09T07:00:15,907 CMake Warning (dev) at CMakeLists.txt:17 (find_package): 2025-09-09T07:00:15,907 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-09T07:00:15,907 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-09T07:00:15,907 the cmake_policy command to set the policy and suppress this warning. 2025-09-09T07:00:15,908 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-09T07:00:15,976 -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5") 2025-09-09T07:00:15,977 CMake Warning (dev) at CMakeLists.txt:18 (find_package): 2025-09-09T07:00:15,977 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-09T07:00:15,977 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-09T07:00:15,978 the cmake_policy command to set the policy and suppress this warning. 2025-09-09T07:00:15,978 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-09T07:00:16,000 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so (found version "3.13.5") 2025-09-09T07:00:16,000 -- Python include path set to /usr/include/python3.13 2025-09-09T07:00:16,002 CMake Deprecation Warning at modules/pybind11/CMakeLists.txt:8 (cmake_minimum_required): 2025-09-09T07:00:16,003 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-09T07:00:16,003 CMake. 2025-09-09T07:00:16,003 Update the VERSION argument value. Or, use the ... syntax 2025-09-09T07:00:16,003 to tell CMake that the project requires at least but has been updated 2025-09-09T07:00:16,003 to work with policies introduced by or earlier. 2025-09-09T07:00:16,004 CMake Deprecation Warning at modules/pybind11/tools/pybind11Tools.cmake:8 (cmake_minimum_required): 2025-09-09T07:00:16,005 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-09T07:00:16,005 CMake. 2025-09-09T07:00:16,005 Update the VERSION argument value. Or, use the ... syntax 2025-09-09T07:00:16,005 to tell CMake that the project requires at least but has been updated 2025-09-09T07:00:16,005 to work with policies introduced by or earlier. 2025-09-09T07:00:16,005 Call Stack (most recent call first): 2025-09-09T07:00:16,005 modules/pybind11/CMakeLists.txt:33 (include) 2025-09-09T07:00:16,006 CMake Warning (dev) at modules/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package): 2025-09-09T07:00:16,006 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-09T07:00:16,006 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-09T07:00:16,006 the cmake_policy command to set the policy and suppress this warning. 2025-09-09T07:00:16,007 Call Stack (most recent call first): 2025-09-09T07:00:16,007 modules/pybind11/tools/pybind11Tools.cmake:16 (find_package) 2025-09-09T07:00:16,007 modules/pybind11/CMakeLists.txt:33 (include) 2025-09-09T07:00:16,007 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-09T07:00:16,673 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so 2025-09-09T07:00:16,683 -- Performing Test HAS_CPP14_FLAG 2025-09-09T07:00:17,157 -- Performing Test HAS_CPP14_FLAG - Success 2025-09-09T07:00:17,180 -- pybind11 v2.3.dev0 2025-09-09T07:00:17,181 -- Compiler flags -Wall -Wno-unused-variable -Wno-unused-value -Wno-unused-but-set-variable -Wno-deprecated-declarations -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto 2025-09-09T07:00:17,182 -- ---CMAKE MODULE PATH - 2025-09-09T07:00:17,182 -- ---CMAKE SOURCE DIR - /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7 2025-09-09T07:00:17,182 -- ---CMAKE PROJECT DIR - /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7 2025-09-09T07:00:17,191 -- Performing Test HAS_FLTO 2025-09-09T07:00:17,843 -- Performing Test HAS_FLTO - Success 2025-09-09T07:00:17,843 -- LTO enabled 2025-09-09T07:00:17,844 STATUS,---ALL DONE WITH CMAKE 2025-09-09T07:00:17,845 -- Configuring done (3.8s) 2025-09-09T07:00:17,880 -- Generating done (0.0s) 2025-09-09T07:00:17,881 -- Build files have been written to: /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/build/temp.linux-armv7l-cpython-313 2025-09-09T07:00:18,160 [ 16%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/AlignUtil.C.o 2025-09-09T07:00:18,160 [ 16%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PairwiseAlign.C.o 2025-09-09T07:00:19,379 [ 25%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PseudoMultiAlign.C.o 2025-09-09T07:00:22,898 [ 25%] Built target align 2025-09-09T07:00:23,014 [ 33%] Linking CXX static library lib/libalign-all.a 2025-09-09T07:00:23,188 [ 33%] Built target align-all 2025-09-09T07:00:23,304 [ 50%] Building CXX object CMakeFiles/align_test_2.dir/modules/PairwiseAlign/test/testPairwiseAlignZF.C.o 2025-09-09T07:00:23,304 [ 50%] Building CXX object CMakeFiles/align_test_1.dir/modules/PairwiseAlign/test/testPairwiseAlign.C.o 2025-09-09T07:00:25,557 [ 58%] Linking CXX executable bin/align_test_2 2025-09-09T07:00:25,727 [ 66%] Linking CXX executable bin/align_test_1 2025-09-09T07:00:30,697 [ 66%] Built target align_test_2 2025-09-09T07:00:30,806 [ 75%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPairwiseAlign.cpp.o 2025-09-09T07:00:33,225 [ 75%] Built target align_test_1 2025-09-09T07:00:33,274 [ 83%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPseudoMultiAlign.cpp.o 2025-09-09T07:00:33,446 In file included from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:13, 2025-09-09T07:00:33,446 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:43, 2025-09-09T07:00:33,446 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/cpp-alignlib-wrapper/src/wrapPairwiseAlign.cpp:5: 2025-09-09T07:00:33,446 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h: In function ‘std::string pybind11::detail::error_string()’: 2025-09-09T07:00:33,446 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:36: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,446 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:33,447 | ^~ 2025-09-09T07:00:33,447 In file included from /usr/include/python3.13/Python.h:67, 2025-09-09T07:00:33,447 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/detail/common.h:112, 2025-09-09T07:00:33,447 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pytypes.h:12, 2025-09-09T07:00:33,447 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:13: 2025-09-09T07:00:33,447 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,447 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,447 | ^~~~~~ 2025-09-09T07:00:33,447 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:75: error: expected primary-expression before ‘>’ token 2025-09-09T07:00:33,448 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:33,448 | ^ 2025-09-09T07:00:33,448 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:77: error: expected primary-expression before ‘)’ token 2025-09-09T07:00:33,448 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:33,448 | ^ 2025-09-09T07:00:33,448 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:29: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,448 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:33,448 | ^~ 2025-09-09T07:00:33,448 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,449 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,449 | ^~~~~~ 2025-09-09T07:00:33,449 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:64: error: expected primary-expression before ‘>’ token 2025-09-09T07:00:33,449 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:33,449 | ^ 2025-09-09T07:00:33,449 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:66: error: expected primary-expression before ‘)’ token 2025-09-09T07:00:33,449 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:33,449 | ^ 2025-09-09T07:00:33,450 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:445:26: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,450 445 | frame = frame->f_back; 2025-09-09T07:00:33,450 | ^~ 2025-09-09T07:00:33,450 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,450 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,450 | ^~~~~~ 2025-09-09T07:00:33,619 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h: At global scope: 2025-09-09T07:00:33,619 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:185:10: error: ‘uint16_t’ in namespace ‘std’ does not name a type; did you mean ‘wint_t’? 2025-09-09T07:00:33,620 185 | std::uint16_t nargs; 2025-09-09T07:00:33,620 | ^~~~~~~~ 2025-09-09T07:00:33,620 | wint_t 2025-09-09T07:00:33,633 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h: In constructor ‘pybind11::detail::function_call::function_call(const pybind11::detail::function_record&, pybind11::handle)’: 2025-09-09T07:00:33,633 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:283:20: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:33,633 283 | args.reserve(f.nargs); 2025-09-09T07:00:33,633 | ^~~~~ 2025-09-09T07:00:33,633 | args 2025-09-09T07:00:33,633 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:284:28: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:33,634 284 | args_convert.reserve(f.nargs); 2025-09-09T07:00:33,634 | ^~~~~ 2025-09-09T07:00:33,634 | args 2025-09-09T07:00:33,723 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In member function ‘void pybind11::cpp_function::initialize_generic(pybind11::detail::function_record*, const char*, const std::type_info* const*, pybind11::size_t)’: 2025-09-09T07:00:33,723 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:283:14: error: ‘struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:33,723 283 | rec->nargs = (std::uint16_t) args; 2025-09-09T07:00:33,723 | ^~~~~ 2025-09-09T07:00:33,724 | args 2025-09-09T07:00:33,725 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:283:28: error: ‘uint16_t’ is not a member of ‘std’; did you mean ‘wint_t’? 2025-09-09T07:00:33,725 283 | rec->nargs = (std::uint16_t) args; 2025-09-09T07:00:33,725 | ^~~~~~~~ 2025-09-09T07:00:33,725 | wint_t 2025-09-09T07:00:33,748 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In static member function ‘static PyObject* pybind11::cpp_function::dispatcher(PyObject*, PyObject*, PyObject*)’: 2025-09-09T07:00:33,748 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:481:40: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:33,748 481 | size_t pos_args = func.nargs; // Number of positional arguments that we need 2025-09-09T07:00:33,748 | ^~~~~ 2025-09-09T07:00:33,749 | args 2025-09-09T07:00:33,756 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:612:53: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:33,756 612 | second_pass_convert.resize(func.nargs, false); 2025-09-09T07:00:33,756 | ^~~~~ 2025-09-09T07:00:33,756 | args 2025-09-09T07:00:33,962 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::function pybind11::get_type_overload(const void*, const detail::type_info*, const char*)’: 2025-09-09T07:00:33,963 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1994:49: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’ 2025-09-09T07:00:33,963 1994 | PyFrameObject *frame = PyThreadState_Get()->frame; 2025-09-09T07:00:33,963 | ^~~~~ 2025-09-09T07:00:33,963 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1995:41: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,963 1995 | if (frame && (std::string) str(frame->f_code->co_name) == name && 2025-09-09T07:00:33,964 | ^~ 2025-09-09T07:00:33,964 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,964 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,964 | ^~~~~~ 2025-09-09T07:00:33,964 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1996:14: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,964 1996 | frame->f_code->co_argcount > 0) { 2025-09-09T07:00:33,964 | ^~ 2025-09-09T07:00:33,964 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,964 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,965 | ^~~~~~ 2025-09-09T07:00:33,965 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:18: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,965 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:33,965 | ^~ 2025-09-09T07:00:33,965 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,965 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,965 | ^~~~~~ 2025-09-09T07:00:33,965 In file included from /usr/include/python3.13/Python.h:63: 2025-09-09T07:00:33,966 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:52: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,966 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:33,966 | ^~ 2025-09-09T07:00:33,966 /usr/include/python3.13/pyport.h:19:38: note: in definition of macro ‘_Py_CAST’ 2025-09-09T07:00:33,966 19 | #define _Py_CAST(type, expr) ((type)(expr)) 2025-09-09T07:00:33,966 | ^~~~ 2025-09-09T07:00:33,966 /usr/include/python3.13/cpython/tupleobject.h:27:38: note: in expansion of macro ‘_PyTuple_CAST’ 2025-09-09T07:00:33,967 27 | #define PyTuple_GET_ITEM(op, index) (_PyTuple_CAST(op)->ob_item[(index)]) 2025-09-09T07:00:33,967 | ^~~~~~~~~~~~~ 2025-09-09T07:00:33,967 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:30: note: in expansion of macro ‘PyTuple_GET_ITEM’ 2025-09-09T07:00:33,967 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:33,967 | ^~~~~~~~~~~~~~~~ 2025-09-09T07:00:33,967 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:33,967 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:33,967 | ^~~~~~ 2025-09-09T07:00:35,814 In file included from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:13, 2025-09-09T07:00:35,815 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:43, 2025-09-09T07:00:35,815 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/cpp-alignlib-wrapper/src/wrapPseudoMultiAlign.cpp:5: 2025-09-09T07:00:35,815 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h: In function ‘std::string pybind11::detail::error_string()’: 2025-09-09T07:00:35,815 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:36: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,815 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:35,816 | ^~ 2025-09-09T07:00:35,816 In file included from /usr/include/python3.13/Python.h:67, 2025-09-09T07:00:35,816 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/detail/common.h:112, 2025-09-09T07:00:35,816 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pytypes.h:12, 2025-09-09T07:00:35,816 from /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:13: 2025-09-09T07:00:35,816 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,816 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:35,817 | ^~~~~~ 2025-09-09T07:00:35,817 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:75: error: expected primary-expression before ‘>’ token 2025-09-09T07:00:35,817 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:35,817 | ^ 2025-09-09T07:00:35,817 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:442:77: error: expected primary-expression before ‘)’ token 2025-09-09T07:00:35,817 442 | " " + handle(frame->f_code->co_filename).cast() + 2025-09-09T07:00:35,817 | ^ 2025-09-09T07:00:35,818 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:29: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,818 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:35,818 | ^~ 2025-09-09T07:00:35,818 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,818 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:35,818 | ^~~~~~ 2025-09-09T07:00:35,818 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:64: error: expected primary-expression before ‘>’ token 2025-09-09T07:00:35,819 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:35,819 | ^ 2025-09-09T07:00:35,819 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:444:66: error: expected primary-expression before ‘)’ token 2025-09-09T07:00:35,819 444 | handle(frame->f_code->co_name).cast() + "\n"; 2025-09-09T07:00:35,819 | ^ 2025-09-09T07:00:35,819 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/cast.h:445:26: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,819 445 | frame = frame->f_back; 2025-09-09T07:00:35,820 | ^~ 2025-09-09T07:00:35,820 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:35,820 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:35,820 | ^~~~~~ 2025-09-09T07:00:35,983 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h: At global scope: 2025-09-09T07:00:35,983 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:185:10: error: ‘uint16_t’ in namespace ‘std’ does not name a type; did you mean ‘wint_t’? 2025-09-09T07:00:35,983 185 | std::uint16_t nargs; 2025-09-09T07:00:35,984 | ^~~~~~~~ 2025-09-09T07:00:35,984 | wint_t 2025-09-09T07:00:35,997 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h: In constructor ‘pybind11::detail::function_call::function_call(const pybind11::detail::function_record&, pybind11::handle)’: 2025-09-09T07:00:35,997 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:283:20: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:35,997 283 | args.reserve(f.nargs); 2025-09-09T07:00:35,998 | ^~~~~ 2025-09-09T07:00:35,998 | args 2025-09-09T07:00:35,998 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/attr.h:284:28: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:35,998 284 | args_convert.reserve(f.nargs); 2025-09-09T07:00:35,998 | ^~~~~ 2025-09-09T07:00:35,998 | args 2025-09-09T07:00:36,086 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In member function ‘void pybind11::cpp_function::initialize_generic(pybind11::detail::function_record*, const char*, const std::type_info* const*, pybind11::size_t)’: 2025-09-09T07:00:36,086 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:283:14: error: ‘struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:36,086 283 | rec->nargs = (std::uint16_t) args; 2025-09-09T07:00:36,086 | ^~~~~ 2025-09-09T07:00:36,086 | args 2025-09-09T07:00:36,088 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:283:28: error: ‘uint16_t’ is not a member of ‘std’; did you mean ‘wint_t’? 2025-09-09T07:00:36,088 283 | rec->nargs = (std::uint16_t) args; 2025-09-09T07:00:36,088 | ^~~~~~~~ 2025-09-09T07:00:36,088 | wint_t 2025-09-09T07:00:36,112 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In static member function ‘static PyObject* pybind11::cpp_function::dispatcher(PyObject*, PyObject*, PyObject*)’: 2025-09-09T07:00:36,112 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:481:40: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:36,112 481 | size_t pos_args = func.nargs; // Number of positional arguments that we need 2025-09-09T07:00:36,112 | ^~~~~ 2025-09-09T07:00:36,112 | args 2025-09-09T07:00:36,119 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:612:53: error: ‘const struct pybind11::detail::function_record’ has no member named ‘nargs’; did you mean ‘args’? 2025-09-09T07:00:36,120 612 | second_pass_convert.resize(func.nargs, false); 2025-09-09T07:00:36,120 | ^~~~~ 2025-09-09T07:00:36,120 | args 2025-09-09T07:00:36,323 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::function pybind11::get_type_overload(const void*, const detail::type_info*, const char*)’: 2025-09-09T07:00:36,323 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1994:49: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’ 2025-09-09T07:00:36,324 1994 | PyFrameObject *frame = PyThreadState_Get()->frame; 2025-09-09T07:00:36,324 | ^~~~~ 2025-09-09T07:00:36,324 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1995:41: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,324 1995 | if (frame && (std::string) str(frame->f_code->co_name) == name && 2025-09-09T07:00:36,325 | ^~ 2025-09-09T07:00:36,325 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,325 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:36,325 | ^~~~~~ 2025-09-09T07:00:36,325 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1996:14: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,325 1996 | frame->f_code->co_argcount > 0) { 2025-09-09T07:00:36,326 | ^~ 2025-09-09T07:00:36,326 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,326 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:36,326 | ^~~~~~ 2025-09-09T07:00:36,326 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:18: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,326 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:36,326 | ^~ 2025-09-09T07:00:36,327 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,327 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:36,327 | ^~~~~~ 2025-09-09T07:00:36,327 In file included from /usr/include/python3.13/Python.h:63: 2025-09-09T07:00:36,327 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:52: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,327 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:36,328 | ^~ 2025-09-09T07:00:36,328 /usr/include/python3.13/pyport.h:19:38: note: in definition of macro ‘_Py_CAST’ 2025-09-09T07:00:36,328 19 | #define _Py_CAST(type, expr) ((type)(expr)) 2025-09-09T07:00:36,328 | ^~~~ 2025-09-09T07:00:36,328 /usr/include/python3.13/cpython/tupleobject.h:27:38: note: in expansion of macro ‘_PyTuple_CAST’ 2025-09-09T07:00:36,328 27 | #define PyTuple_GET_ITEM(op, index) (_PyTuple_CAST(op)->ob_item[(index)]) 2025-09-09T07:00:36,328 | ^~~~~~~~~~~~~ 2025-09-09T07:00:36,329 /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/modules/pybind11/include/pybind11/pybind11.h:1999:30: note: in expansion of macro ‘PyTuple_GET_ITEM’ 2025-09-09T07:00:36,329 1999 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2025-09-09T07:00:36,329 | ^~~~~~~~~~~~~~~~ 2025-09-09T07:00:36,329 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-09T07:00:36,330 22 | typedef struct _frame PyFrameObject; 2025-09-09T07:00:36,330 | ^~~~~~ 2025-09-09T07:00:37,706 gmake[2]: *** [CMakeFiles/alignlib.dir/build.make:79: CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPairwiseAlign.cpp.o] Error 1 2025-09-09T07:00:37,706 gmake[2]: *** Waiting for unfinished jobs.... 2025-09-09T07:00:39,532 gmake[2]: *** [CMakeFiles/alignlib.dir/build.make:93: CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPseudoMultiAlign.cpp.o] Error 1 2025-09-09T07:00:39,533 gmake[1]: *** [CMakeFiles/Makefile2:249: CMakeFiles/alignlib.dir/all] Error 2 2025-09-09T07:00:39,533 gmake: *** [Makefile:136: all] Error 2 2025-09-09T07:00:39,545 Traceback (most recent call last): 2025-09-09T07:00:39,554 File "", line 2, in 2025-09-09T07:00:39,554 exec(compile(''' 2025-09-09T07:00:39,554 ~~~~^^^^^^^^^^^^ 2025-09-09T07:00:39,554 # This is -- a caller that pip uses to run setup.py 2025-09-09T07:00:39,554 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,555 ...<32 lines>... 2025-09-09T07:00:39,555 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T07:00:39,555 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,555 ''' % ('/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py',), "", "exec")) 2025-09-09T07:00:39,555 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,555 File "", line 35, in 2025-09-09T07:00:39,556 File "/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py", line 125, in 2025-09-09T07:00:39,556 setup( 2025-09-09T07:00:39,556 ~~~~~^ 2025-09-09T07:00:39,556 name=thisPackage, 2025-09-09T07:00:39,556 ^^^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,556 ...<47 lines>... 2025-09-09T07:00:39,556 zip_safe=False, 2025-09-09T07:00:39,556 ^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,557 ) 2025-09-09T07:00:39,557 ^ 2025-09-09T07:00:39,557 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-09T07:00:39,557 return distutils.core.setup(**attrs) 2025-09-09T07:00:39,557 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,557 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-09T07:00:39,557 return run_commands(dist) 2025-09-09T07:00:39,558 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-09T07:00:39,558 dist.run_commands() 2025-09-09T07:00:39,558 ~~~~~~~~~~~~~~~~~^^ 2025-09-09T07:00:39,558 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-09T07:00:39,558 self.run_command(cmd) 2025-09-09T07:00:39,558 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-09T07:00:39,558 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T07:00:39,559 super().run_command(command) 2025-09-09T07:00:39,559 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,559 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T07:00:39,559 cmd_obj.run() 2025-09-09T07:00:39,559 ~~~~~~~~~~~^^ 2025-09-09T07:00:39,559 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-09T07:00:39,559 self.run_command("build") 2025-09-09T07:00:39,560 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,560 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-09T07:00:39,560 self.distribution.run_command(command) 2025-09-09T07:00:39,560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,560 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T07:00:39,560 super().run_command(command) 2025-09-09T07:00:39,561 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,561 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T07:00:39,561 cmd_obj.run() 2025-09-09T07:00:39,561 ~~~~~~~~~~~^^ 2025-09-09T07:00:39,561 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-09T07:00:39,561 self.run_command(cmd_name) 2025-09-09T07:00:39,561 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-09T07:00:39,562 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-09T07:00:39,562 self.distribution.run_command(command) 2025-09-09T07:00:39,562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,562 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T07:00:39,562 super().run_command(command) 2025-09-09T07:00:39,562 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T07:00:39,562 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T07:00:39,562 cmd_obj.run() 2025-09-09T07:00:39,562 ~~~~~~~~~~~^^ 2025-09-09T07:00:39,563 File "/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py", line 38, in run 2025-09-09T07:00:39,563 self.build_extension(ext) 2025-09-09T07:00:39,563 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-09T07:00:39,563 File "/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py", line 111, in build_extension 2025-09-09T07:00:39,563 subprocess.check_call(["cmake", "--build", "."] + buildArgs, cwd=self.build_temp) 2025-09-09T07:00:39,563 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T07:00:39,563 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-09T07:00:39,563 raise CalledProcessError(retcode, cmd) 2025-09-09T07:00:39,564 subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2. 2025-09-09T07:00:39,673 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T07:00:39,685 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T07:00:39,685 exec(compile('"'"''"'"''"'"' 2025-09-09T07:00:39,685 # This is -- a caller that pip uses to run setup.py 2025-09-09T07:00:39,685 # 2025-09-09T07:00:39,685 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T07:00:39,685 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T07:00:39,685 # - It provides a clear error message when setuptools is not installed. 2025-09-09T07:00:39,685 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T07:00:39,685 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T07:00:39,685 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T07:00:39,685 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T07:00:39,685 import os, sys, tokenize, traceback 2025-09-09T07:00:39,685 2025-09-09T07:00:39,685 try: 2025-09-09T07:00:39,685 import setuptools 2025-09-09T07:00:39,685 except ImportError: 2025-09-09T07:00:39,685 print( 2025-09-09T07:00:39,685 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T07:00:39,685 "the build environment with exception:", 2025-09-09T07:00:39,685 file=sys.stderr, 2025-09-09T07:00:39,685 ) 2025-09-09T07:00:39,685 traceback.print_exc() 2025-09-09T07:00:39,685 sys.exit(1) 2025-09-09T07:00:39,685 2025-09-09T07:00:39,685 __file__ = %r 2025-09-09T07:00:39,685 sys.argv[0] = __file__ 2025-09-09T07:00:39,685 2025-09-09T07:00:39,685 if os.path.exists(__file__): 2025-09-09T07:00:39,685 filename = __file__ 2025-09-09T07:00:39,685 with tokenize.open(__file__) as f: 2025-09-09T07:00:39,685 setup_py_code = f.read() 2025-09-09T07:00:39,685 else: 2025-09-09T07:00:39,685 filename = "" 2025-09-09T07:00:39,685 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T07:00:39,685 2025-09-09T07:00:39,685 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T07:00:39,685 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ve3uo3iw[/] 2025-09-09T07:00:39,686 [bold magenta]cwd[/]: /tmp/pip-wheel-0g39lj4r/wwpdb-utils-align_40a10bcdac8a4e87bcafdd87c39810f7/ 2025-09-09T07:00:39,686 Building wheel for wwpdb-utils-align (setup.py): finished with status 'error' 2025-09-09T07:00:39,686 ERROR: Failed building wheel for wwpdb-utils-align 2025-09-09T07:00:39,687 Running setup.py clean for wwpdb-utils-align 2025-09-09T07:00:39,688 Running command python setup.py clean 2025-09-09T07:00:40,569 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-09T07:00:40,569 warnings.warn(msg) 2025-09-09T07:00:40,569 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-09T07:00:40,569 warnings.warn(msg) 2025-09-09T07:00:40,778 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T07:00:40,779 !! 2025-09-09T07:00:40,779 ******************************************************************************** 2025-09-09T07:00:40,779 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T07:00:40,779 License :: OSI Approved :: Apache Software License 2025-09-09T07:00:40,779 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T07:00:40,779 ******************************************************************************** 2025-09-09T07:00:40,780 !! 2025-09-09T07:00:40,780 self._finalize_license_expression() 2025-09-09T07:00:40,854 running clean 2025-09-09T07:00:41,002 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T07:00:41,008 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-09T07:00:41,009 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T07:00:41,009 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T07:00:41,009 removing 'build' 2025-09-09T07:00:41,123 Failed to build wwpdb-utils-align 2025-09-09T07:00:41,124 ERROR: Failed to build one or more wheels 2025-09-09T07:00:41,125 Exception information: 2025-09-09T07:00:41,125 Traceback (most recent call last): 2025-09-09T07:00:41,125 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T07:00:41,125 status = _inner_run() 2025-09-09T07:00:41,125 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T07:00:41,125 return self.run(options, args) 2025-09-09T07:00:41,125 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T07:00:41,125 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T07:00:41,125 return func(self, options, args) 2025-09-09T07:00:41,125 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T07:00:41,125 raise CommandError("Failed to build one or more wheels") 2025-09-09T07:00:41,125 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T07:00:41,129 Removed build tracker: '/tmp/pip-build-tracker-0gjfjbb2'