2025-09-09T09:57:29,061 Created temporary directory: /tmp/pip-build-tracker-cq23p_pw 2025-09-09T09:57:29,062 Initialized build tracking at /tmp/pip-build-tracker-cq23p_pw 2025-09-09T09:57:29,062 Created build tracker: /tmp/pip-build-tracker-cq23p_pw 2025-09-09T09:57:29,062 Entered build tracker: /tmp/pip-build-tracker-cq23p_pw 2025-09-09T09:57:29,062 Created temporary directory: /tmp/pip-wheel-9whe7l66 2025-09-09T09:57:29,065 Created temporary directory: /tmp/pip-ephem-wheel-cache-2wzhe7qx 2025-09-09T09:57:29,126 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T09:57:29,128 2 location(s) to search for versions of python-javabridge: 2025-09-09T09:57:29,128 * https://pypi.org/simple/python-javabridge/ 2025-09-09T09:57:29,128 * https://www.piwheels.org/simple/python-javabridge/ 2025-09-09T09:57:29,128 Fetching project page and analyzing links: https://pypi.org/simple/python-javabridge/ 2025-09-09T09:57:29,129 Getting page https://pypi.org/simple/python-javabridge/ 2025-09-09T09:57:29,130 Found index url https://pypi.org/simple/ 2025-09-09T09:57:29,199 Fetched page https://pypi.org/simple/python-javabridge/ as application/vnd.pypi.simple.v1+json 2025-09-09T09:57:29,201 Found link https://files.pythonhosted.org/packages/58/5c/bfcc52002c9dfe5fe3bd067783243ab0130f59f757b0517f62f1ba7e88ea/python-javabridge-4.0.0.tar.gz (from https://pypi.org/simple/python-javabridge/), version: 4.0.0 2025-09-09T09:57:29,201 Skipping link: No binaries permitted for python-javabridge: https://files.pythonhosted.org/packages/21/52/7d9737c905264061f45e81ce57f6532c9e46462f0093beed4d4d72928600/python_javabridge-4.0.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/python-javabridge/) 2025-09-09T09:57:29,201 Found link https://files.pythonhosted.org/packages/0e/52/b444f826f4148cc741755a6b6adbd1707c01864e45359b8fdf3f67c71ebc/python-javabridge-4.0.1.tar.gz (from https://pypi.org/simple/python-javabridge/), version: 4.0.1 2025-09-09T09:57:29,201 Found link https://files.pythonhosted.org/packages/8c/c1/e553ceb6e71e0112d125d5a451390dc7df42962c1f67147a4c1d5b1938f9/python-javabridge-4.0.2.tar.gz (from https://pypi.org/simple/python-javabridge/), version: 4.0.2 2025-09-09T09:57:29,202 Found link https://files.pythonhosted.org/packages/5e/d5/78f75ee0a6beb51a606c50cc17d8f99782653f04dce6d5e12feaef089692/python-javabridge-4.0.3.tar.gz (from https://pypi.org/simple/python-javabridge/), version: 4.0.3 2025-09-09T09:57:29,202 Skipping link: No binaries permitted for python-javabridge: https://files.pythonhosted.org/packages/63/e1/ec42c900455f9c7f076aca2cbc9a8171b337d9a301e64e858b7878721dd0/python_javabridge-4.0.3-cp39-cp39-macosx_10_19_x86_64.whl (from https://pypi.org/simple/python-javabridge/) 2025-09-09T09:57:29,202 Skipping link: No binaries permitted for python-javabridge: https://files.pythonhosted.org/packages/f3/02/95ac8d771b4b607d6e2dd65c12cbb8dd627ae8e9aba0668ac4d34da0bed4/python_javabridge-4.0.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-javabridge/) 2025-09-09T09:57:29,202 Found link https://files.pythonhosted.org/packages/5b/e2/3bf9afe20d16ea603c67de9d1af1be2eafeaf15c9c11e65770fd17ccd28e/python_javabridge-4.0.4.tar.gz (from https://pypi.org/simple/python-javabridge/), version: 4.0.4 2025-09-09T09:57:29,203 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-javabridge/ 2025-09-09T09:57:29,203 Getting page https://www.piwheels.org/simple/python-javabridge/ 2025-09-09T09:57:29,204 Found index url https://www.piwheels.org/simple/ 2025-09-09T09:57:29,301 Fetched page https://www.piwheels.org/simple/python-javabridge/ as text/html 2025-09-09T09:57:29,302 Skipping link: not a file: https://www.piwheels.org/simple/python-javabridge/ 2025-09-09T09:57:29,302 Skipping link: not a file: https://pypi.org/simple/python-javabridge/ 2025-09-09T09:57:29,327 Given no hashes to check 1 links for project 'python-javabridge': discarding no candidates 2025-09-09T09:57:29,328 Collecting python-javabridge==4.0.1 2025-09-09T09:57:29,330 Created temporary directory: /tmp/pip-unpack-f2bhfj8j 2025-09-09T09:57:29,495 Downloading python-javabridge-4.0.1.tar.gz (1.3 MB) 2025-09-09T09:57:29,755 Added python-javabridge==4.0.1 from https://files.pythonhosted.org/packages/0e/52/b444f826f4148cc741755a6b6adbd1707c01864e45359b8fdf3f67c71ebc/python-javabridge-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-cq23p_pw' 2025-09-09T09:57:29,757 Running setup.py (path:/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/setup.py) egg_info for package python-javabridge 2025-09-09T09:57:29,757 Created temporary directory: /tmp/pip-pip-egg-info-wb6vckzy 2025-09-09T09:57:29,757 Preparing metadata (setup.py): started 2025-09-09T09:57:29,758 Running command python setup.py egg_info 2025-09-09T09:57:30,528 Traceback (most recent call last): 2025-09-09T09:57:30,531 File "", line 2, in 2025-09-09T09:57:30,531 exec(compile(''' 2025-09-09T09:57:30,531 ~~~~^^^^^^^^^^^^ 2025-09-09T09:57:30,531 # This is -- a caller that pip uses to run setup.py 2025-09-09T09:57:30,531 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,531 ...<32 lines>... 2025-09-09T09:57:30,531 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T09:57:30,532 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,532 ''' % ('/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/setup.py',), "", "exec")) 2025-09-09T09:57:30,532 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,532 File "", line 35, in 2025-09-09T09:57:30,532 File "/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/setup.py", line 412, in 2025-09-09T09:57:30,532 ext_modules=ext_modules(), 2025-09-09T09:57:30,532 ~~~~~~~~~~~^^ 2025-09-09T09:57:30,532 File "/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/setup.py", line 96, in ext_modules 2025-09-09T09:57:30,533 java_home = find_javahome() 2025-09-09T09:57:30,533 File "/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/javabridge/locate.py", line 132, in find_javahome 2025-09-09T09:57:30,533 java_bin = get_out(["bash", "-c", "type -p java"]) 2025-09-09T09:57:30,533 File "/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/javabridge/locate.py", line 129, in get_out 2025-09-09T09:57:30,533 raise Exception("Error finding javahome on linux: %s" % cmd) 2025-09-09T09:57:30,533 Exception: Error finding javahome on linux: ['bash', '-c', 'type -p java'] 2025-09-09T09:57:30,637 ERROR: python setup.py egg_info exited with 1 2025-09-09T09:57:30,649 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-09T09:57:30,649 exec(compile('"'"''"'"''"'"' 2025-09-09T09:57:30,649 # This is -- a caller that pip uses to run setup.py 2025-09-09T09:57:30,649 # 2025-09-09T09:57:30,649 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T09:57:30,649 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T09:57:30,649 # - It provides a clear error message when setuptools is not installed. 2025-09-09T09:57:30,649 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T09:57:30,649 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T09:57:30,649 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T09:57:30,649 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T09:57:30,649 import os, sys, tokenize, traceback 2025-09-09T09:57:30,649 2025-09-09T09:57:30,649 try: 2025-09-09T09:57:30,649 import setuptools 2025-09-09T09:57:30,649 except ImportError: 2025-09-09T09:57:30,649 print( 2025-09-09T09:57:30,649 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T09:57:30,649 "the build environment with exception:", 2025-09-09T09:57:30,649 file=sys.stderr, 2025-09-09T09:57:30,649 ) 2025-09-09T09:57:30,649 traceback.print_exc() 2025-09-09T09:57:30,649 sys.exit(1) 2025-09-09T09:57:30,649 2025-09-09T09:57:30,649 __file__ = %r 2025-09-09T09:57:30,649 sys.argv[0] = __file__ 2025-09-09T09:57:30,649 2025-09-09T09:57:30,649 if os.path.exists(__file__): 2025-09-09T09:57:30,649 filename = __file__ 2025-09-09T09:57:30,649 with tokenize.open(__file__) as f: 2025-09-09T09:57:30,649 setup_py_code = f.read() 2025-09-09T09:57:30,649 else: 2025-09-09T09:57:30,649 filename = "" 2025-09-09T09:57:30,649 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T09:57:30,649 2025-09-09T09:57:30,649 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T09:57:30,649 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-wb6vckzy[/] 2025-09-09T09:57:30,649 [bold magenta]cwd[/]: /tmp/pip-wheel-9whe7l66/python-javabridge_7b32db77d49849aaa7123ca42c3639cf/ 2025-09-09T09:57:30,649 Preparing metadata (setup.py): finished with status 'error' 2025-09-09T09:57:30,650 ERROR: metadata generation failed 2025-09-09T09:57:30,655 Exception information: 2025-09-09T09:57:30,655 Traceback (most recent call last): 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-09T09:57:30,655 call_subprocess( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 args, 2025-09-09T09:57:30,655 ^^^^^ 2025-09-09T09:57:30,655 ...<2 lines>... 2025-09-09T09:57:30,655 spinner=spinner, 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-09T09:57:30,655 raise error 2025-09-09T09:57:30,655 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-09T09:57:30,655 2025-09-09T09:57:30,655 The above exception was the direct cause of the following exception: 2025-09-09T09:57:30,655 2025-09-09T09:57:30,655 Traceback (most recent call last): 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T09:57:30,655 status = _inner_run() 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T09:57:30,655 return self.run(options, args) 2025-09-09T09:57:30,655 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T09:57:30,655 return func(self, options, args) 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-09T09:57:30,655 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-09T09:57:30,655 result = self._result = resolver.resolve( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-09T09:57:30,655 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-09T09:57:30,655 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-09T09:57:30,655 if not criterion.candidates: 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-09T09:57:30,655 return bool(self._sequence) 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-09T09:57:30,655 self._bool = any(self) 2025-09-09T09:57:30,655 ~~~^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-09T09:57:30,655 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-09T09:57:30,655 ^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-09T09:57:30,655 candidate = func() 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-09T09:57:30,655 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 link, template, name, version 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-09T09:57:30,655 self._link_candidate_cache[link] = LinkCandidate( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 link, 2025-09-09T09:57:30,655 ^^^^^ 2025-09-09T09:57:30,655 ...<3 lines>... 2025-09-09T09:57:30,655 version=version, 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-09T09:57:30,655 super().__init__( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 link=link, 2025-09-09T09:57:30,655 ^^^^^^^^^^ 2025-09-09T09:57:30,655 ...<4 lines>... 2025-09-09T09:57:30,655 version=version, 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-09T09:57:30,655 self.dist = self._prepare() 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-09T09:57:30,655 dist = self._prepare_distribution() 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-09T09:57:30,655 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-09T09:57:30,655 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-09T09:57:30,655 dist = _get_prepared_distribution( 2025-09-09T09:57:30,655 req, 2025-09-09T09:57:30,655 ...<3 lines>... 2025-09-09T09:57:30,655 self.check_build_deps, 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-09T09:57:30,655 abstract_dist.prepare_distribution_metadata( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 finder, build_isolation, check_build_deps 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-09T09:57:30,655 self.req.prepare_metadata() 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-09T09:57:30,655 self.metadata_directory = generate_metadata_legacy( 2025-09-09T09:57:30,655 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T09:57:30,655 build_env=self.build_env, 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ...<3 lines>... 2025-09-09T09:57:30,655 details=details, 2025-09-09T09:57:30,655 ^^^^^^^^^^^^^^^^ 2025-09-09T09:57:30,655 ) 2025-09-09T09:57:30,655 ^ 2025-09-09T09:57:30,655 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-09T09:57:30,655 raise MetadataGenerationFailed(package_details=details) from error 2025-09-09T09:57:30,655 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-09T09:57:30,678 Removed python-javabridge==4.0.1 from https://files.pythonhosted.org/packages/0e/52/b444f826f4148cc741755a6b6adbd1707c01864e45359b8fdf3f67c71ebc/python-javabridge-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-cq23p_pw' 2025-09-09T09:57:30,678 Removed build tracker: '/tmp/pip-build-tracker-cq23p_pw'