2025-09-09T14:29:06,861 Created temporary directory: /tmp/pip-build-tracker-vblq6a5o 2025-09-09T14:29:06,861 Initialized build tracking at /tmp/pip-build-tracker-vblq6a5o 2025-09-09T14:29:06,861 Created build tracker: /tmp/pip-build-tracker-vblq6a5o 2025-09-09T14:29:06,862 Entered build tracker: /tmp/pip-build-tracker-vblq6a5o 2025-09-09T14:29:06,862 Created temporary directory: /tmp/pip-wheel-n3t821i3 2025-09-09T14:29:06,865 Created temporary directory: /tmp/pip-ephem-wheel-cache-6bmvy730 2025-09-09T14:29:06,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T14:29:06,925 2 location(s) to search for versions of rcsb-utils-chem: 2025-09-09T14:29:06,925 * https://pypi.org/simple/rcsb-utils-chem/ 2025-09-09T14:29:06,925 * https://www.piwheels.org/simple/rcsb-utils-chem/ 2025-09-09T14:29:06,925 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-chem/ 2025-09-09T14:29:06,925 Getting page 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https://pypi.org/simple/rcsb-utils-chem/ 2025-09-09T14:29:07,264 Given no hashes to check 1 links for project 'rcsb-utils-chem': discarding no candidates 2025-09-09T14:29:07,265 Collecting rcsb-utils-chem==0.72 2025-09-09T14:29:07,267 Created temporary directory: /tmp/pip-unpack-2_23ptl8 2025-09-09T14:29:07,403 Downloading rcsb.utils.chem-0.72.tar.gz (82 kB) 2025-09-09T14:29:07,477 Added rcsb-utils-chem==0.72 from https://files.pythonhosted.org/packages/a4/14/9e176c78ae88c56d6b7b6addc0d3cb9fcef34d48fc9b47d0f3224297fe0e/rcsb.utils.chem-0.72.tar.gz to build tracker '/tmp/pip-build-tracker-vblq6a5o' 2025-09-09T14:29:07,478 Running setup.py (path:/tmp/pip-wheel-n3t821i3/rcsb-utils-chem_e6ad6a21fc6a47b8b41af920976f3bed/setup.py) egg_info for package rcsb-utils-chem 2025-09-09T14:29:07,478 Created temporary directory: /tmp/pip-pip-egg-info-sckwgtes 2025-09-09T14:29:07,478 Preparing metadata (setup.py): started 2025-09-09T14:29:07,479 Running command python setup.py egg_info 2025-09-09T14:29:08,015 Traceback (most recent call last): 2025-09-09T14:29:08,016 File "", line 2, in 2025-09-09T14:29:08,017 exec(compile(''' 2025-09-09T14:29:08,017 ~~~~^^^^^^^^^^^^ 2025-09-09T14:29:08,017 # This is -- a caller that pip uses to run setup.py 2025-09-09T14:29:08,017 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,017 ...<32 lines>... 2025-09-09T14:29:08,017 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T14:29:08,017 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,017 ''' % ('/tmp/pip-wheel-n3t821i3/rcsb-utils-chem_e6ad6a21fc6a47b8b41af920976f3bed/setup.py',), "", "exec")) 2025-09-09T14:29:08,017 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,018 File "", line 35, in 2025-09-09T14:29:08,018 File "/tmp/pip-wheel-n3t821i3/rcsb-utils-chem_e6ad6a21fc6a47b8b41af920976f3bed/setup.py", line 20, in 2025-09-09T14:29:08,018 with open("requirements.txt", "r") as ifh: 2025-09-09T14:29:08,018 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,018 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2025-09-09T14:29:08,103 ERROR: python setup.py egg_info exited with 1 2025-09-09T14:29:08,115 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-09T14:29:08,115 exec(compile('"'"''"'"''"'"' 2025-09-09T14:29:08,115 # This is -- a caller that pip uses to run setup.py 2025-09-09T14:29:08,115 # 2025-09-09T14:29:08,115 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T14:29:08,115 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T14:29:08,115 # - It provides a clear error message when setuptools is not installed. 2025-09-09T14:29:08,115 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T14:29:08,115 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T14:29:08,115 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T14:29:08,115 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T14:29:08,115 import os, sys, tokenize, traceback 2025-09-09T14:29:08,115 2025-09-09T14:29:08,115 try: 2025-09-09T14:29:08,115 import setuptools 2025-09-09T14:29:08,115 except ImportError: 2025-09-09T14:29:08,115 print( 2025-09-09T14:29:08,115 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T14:29:08,115 "the build environment with exception:", 2025-09-09T14:29:08,115 file=sys.stderr, 2025-09-09T14:29:08,115 ) 2025-09-09T14:29:08,115 traceback.print_exc() 2025-09-09T14:29:08,115 sys.exit(1) 2025-09-09T14:29:08,115 2025-09-09T14:29:08,115 __file__ = %r 2025-09-09T14:29:08,115 sys.argv[0] = __file__ 2025-09-09T14:29:08,115 2025-09-09T14:29:08,115 if os.path.exists(__file__): 2025-09-09T14:29:08,115 filename = __file__ 2025-09-09T14:29:08,115 with tokenize.open(__file__) as f: 2025-09-09T14:29:08,115 setup_py_code = f.read() 2025-09-09T14:29:08,115 else: 2025-09-09T14:29:08,115 filename = "" 2025-09-09T14:29:08,115 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T14:29:08,115 2025-09-09T14:29:08,115 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T14:29:08,115 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-n3t821i3/rcsb-utils-chem_e6ad6a21fc6a47b8b41af920976f3bed/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-sckwgtes[/] 2025-09-09T14:29:08,116 [bold magenta]cwd[/]: /tmp/pip-wheel-n3t821i3/rcsb-utils-chem_e6ad6a21fc6a47b8b41af920976f3bed/ 2025-09-09T14:29:08,116 Preparing metadata (setup.py): finished with status 'error' 2025-09-09T14:29:08,117 ERROR: metadata generation failed 2025-09-09T14:29:08,123 Exception information: 2025-09-09T14:29:08,123 Traceback (most recent call last): 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-09T14:29:08,123 call_subprocess( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 args, 2025-09-09T14:29:08,123 ^^^^^ 2025-09-09T14:29:08,123 ...<2 lines>... 2025-09-09T14:29:08,123 spinner=spinner, 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-09T14:29:08,123 raise error 2025-09-09T14:29:08,123 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-09T14:29:08,123 2025-09-09T14:29:08,123 The above exception was the direct cause of the following exception: 2025-09-09T14:29:08,123 2025-09-09T14:29:08,123 Traceback (most recent call last): 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T14:29:08,123 status = _inner_run() 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T14:29:08,123 return self.run(options, args) 2025-09-09T14:29:08,123 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T14:29:08,123 return func(self, options, args) 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-09T14:29:08,123 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-09T14:29:08,123 result = self._result = resolver.resolve( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-09T14:29:08,123 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-09T14:29:08,123 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-09T14:29:08,123 if not criterion.candidates: 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-09T14:29:08,123 return bool(self._sequence) 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-09T14:29:08,123 self._bool = any(self) 2025-09-09T14:29:08,123 ~~~^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-09T14:29:08,123 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-09T14:29:08,123 ^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-09T14:29:08,123 candidate = func() 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-09T14:29:08,123 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 link, template, name, version 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-09T14:29:08,123 self._link_candidate_cache[link] = LinkCandidate( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 link, 2025-09-09T14:29:08,123 ^^^^^ 2025-09-09T14:29:08,123 ...<3 lines>... 2025-09-09T14:29:08,123 version=version, 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-09T14:29:08,123 super().__init__( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 link=link, 2025-09-09T14:29:08,123 ^^^^^^^^^^ 2025-09-09T14:29:08,123 ...<4 lines>... 2025-09-09T14:29:08,123 version=version, 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-09T14:29:08,123 self.dist = self._prepare() 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-09T14:29:08,123 dist = self._prepare_distribution() 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-09T14:29:08,123 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-09T14:29:08,123 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-09T14:29:08,123 dist = _get_prepared_distribution( 2025-09-09T14:29:08,123 req, 2025-09-09T14:29:08,123 ...<3 lines>... 2025-09-09T14:29:08,123 self.check_build_deps, 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-09T14:29:08,123 abstract_dist.prepare_distribution_metadata( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 finder, build_isolation, check_build_deps 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-09T14:29:08,123 self.req.prepare_metadata() 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-09T14:29:08,123 self.metadata_directory = generate_metadata_legacy( 2025-09-09T14:29:08,123 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-09T14:29:08,123 build_env=self.build_env, 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ...<3 lines>... 2025-09-09T14:29:08,123 details=details, 2025-09-09T14:29:08,123 ^^^^^^^^^^^^^^^^ 2025-09-09T14:29:08,123 ) 2025-09-09T14:29:08,123 ^ 2025-09-09T14:29:08,123 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-09T14:29:08,123 raise MetadataGenerationFailed(package_details=details) from error 2025-09-09T14:29:08,123 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-09T14:29:08,148 Removed rcsb-utils-chem==0.72 from https://files.pythonhosted.org/packages/a4/14/9e176c78ae88c56d6b7b6addc0d3cb9fcef34d48fc9b47d0f3224297fe0e/rcsb.utils.chem-0.72.tar.gz from build tracker '/tmp/pip-build-tracker-vblq6a5o' 2025-09-09T14:29:08,148 Removed build tracker: '/tmp/pip-build-tracker-vblq6a5o'