2025-09-09T22:40:20,385 Created temporary directory: /tmp/pip-build-tracker-flgcloi_ 2025-09-09T22:40:20,386 Initialized build tracking at /tmp/pip-build-tracker-flgcloi_ 2025-09-09T22:40:20,386 Created build tracker: /tmp/pip-build-tracker-flgcloi_ 2025-09-09T22:40:20,386 Entered build tracker: /tmp/pip-build-tracker-flgcloi_ 2025-09-09T22:40:20,386 Created temporary directory: /tmp/pip-wheel-zolhid9c 2025-09-09T22:40:20,389 Created temporary directory: /tmp/pip-ephem-wheel-cache-q76duy95 2025-09-09T22:40:20,450 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-09T22:40:20,452 2 location(s) to search for versions of peptides: 2025-09-09T22:40:20,452 * https://pypi.org/simple/peptides/ 2025-09-09T22:40:20,452 * https://www.piwheels.org/simple/peptides/ 2025-09-09T22:40:20,452 Fetching project page and analyzing links: https://pypi.org/simple/peptides/ 2025-09-09T22:40:20,453 Getting page https://pypi.org/simple/peptides/ 2025-09-09T22:40:20,454 Found index url https://pypi.org/simple/ 2025-09-09T22:40:20,524 Fetched page https://pypi.org/simple/peptides/ as application/vnd.pypi.simple.v1+json 2025-09-09T22:40:20,527 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/a6/0e/4dd0d71f5fd5ea7809ff2049da23958e941d7f76ae36864daec85124d2d9/peptides-0.1.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,527 Found link https://files.pythonhosted.org/packages/80/df/c741791a1174f6a8ce392b124f20d3387ab7550dd7dd2910bc91dea02043/peptides-0.1.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.1.0 2025-09-09T22:40:20,528 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/cd/31/ddafd8e7f4b55d732f381ea66663b57dc65c78f44ec43aed057ca2c2dc76/peptides-0.2.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,528 Found link https://files.pythonhosted.org/packages/7b/60/de964d499d99c0b9eb5b688a149491bfb51b75c16a5acbe9faedb58fe456/peptides-0.2.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.2.0 2025-09-09T22:40:20,528 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/f4/c8/0c7ca572c0462178fce957b5913abf119419bc5dc8f28ef39109cda3f1e4/peptides-0.2.1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,528 Found link https://files.pythonhosted.org/packages/db/c9/f8043fac66d031b723c257d0c8b10bca56535a9beb9972f07e096c181a27/peptides-0.2.1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.2.1 2025-09-09T22:40:20,528 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/91/63/8226ff18604dce95ff7a3ec749deba12f8555ca46169923577b7fe78c201/peptides-0.3.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,529 Found link https://files.pythonhosted.org/packages/d7/2d/8e6450016e9bbc1f433c054857b22513521f7d1e6a84af66c9a5df7123f6/peptides-0.3.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.0 2025-09-09T22:40:20,529 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/8a/a8/23262e1e39dc4c3624b04bcebb3ba4bb40f818ae32438048167dc7aa0bb6/peptides-0.3.1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,529 Found link https://files.pythonhosted.org/packages/dd/04/f67d53cdd071ea25a13bf0bb9638ca4033b4bbbf8e1e30fe4e7652da12d1/peptides-0.3.1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.1 2025-09-09T22:40:20,529 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/47/fa/3edf188b285dde06e0aea3d8c175e8dd4f7e302a5a39d65fd9195c48363f/peptides-0.3.2-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,529 Found link https://files.pythonhosted.org/packages/3c/0d/cc978e1a9129b235bc0282da0809c388c34f7ee9b3d7a419b90db6f3a224/peptides-0.3.2.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.2 2025-09-09T22:40:20,529 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/e1/03/9abefd8bdadcca5ca1aa1785d9b15c9e8d5f0ad9d78bb81043920501c384/peptides-0.3.3-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,530 Found link https://files.pythonhosted.org/packages/22/73/b8eede2ad2e6cb14db4c07de708091bf3911a4c4bca01a5fb1f2422e2c6f/peptides-0.3.3.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.3 2025-09-09T22:40:20,530 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/82/d6/c9bc4f19cee59eff0e8e8a3a10192f4d2ae44500b78a4d2f58e32a9c2f39/peptides-0.3.3.post1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,530 Found link https://files.pythonhosted.org/packages/db/6e/11df5f10241d2b7d4b6981a126c35a8ed269f5d5008ec4e04255acd5eea7/peptides-0.3.3.post1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.3.post1 2025-09-09T22:40:20,530 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/c4/ce/a4526cf3029462cd79ba87220bbd5ad3aba0927321a4d978a0e30f19032f/peptides-0.3.4-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,530 Found link https://files.pythonhosted.org/packages/c2/5a/871e514852764db28796d4b83bf327cfeab1211e400b2cdfa57cc5ee63d6/peptides-0.3.4.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.4 2025-09-09T22:40:20,531 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/58/79/f36b3f1c640286d772bbbfedcc67837c59f401095d0eb78825d82ab488a8/peptides-0.4.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,531 Found link https://files.pythonhosted.org/packages/9c/c8/7c84541a01c38016a93eeea110cfdd7ab50c0dfcd42ac89ec63ca0b75f37/peptides-0.4.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.4.0 2025-09-09T22:40:20,531 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/df/8a/a8657f7dd2a401718d81b815c6783fe7bdef34bb4b2013be6568bf2b5041/peptides-0.5.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,531 Found link https://files.pythonhosted.org/packages/ee/db/27818c8a7917bb44c0f91df86ee95d9741502653da1c0fb68e260de8bc18/peptides-0.5.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.5.0 2025-09-09T22:40:20,531 Fetching project page and analyzing links: https://www.piwheels.org/simple/peptides/ 2025-09-09T22:40:20,532 Getting page https://www.piwheels.org/simple/peptides/ 2025-09-09T22:40:20,532 Found index url https://www.piwheels.org/simple/ 2025-09-09T22:40:20,618 Fetched page https://www.piwheels.org/simple/peptides/ as text/html 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://www.piwheels.org/simple/peptides/peptides-0.5.0-py3-none-any.whl#sha256=f37a5c0f1e1b4667e6f31483dc7252bcfd1b510cd7b87c2bdaf3b5ffbcc1c088 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.4.0-py3-none-any.whl#sha256=0c9d24313ff40b67305b6e95dab499b7623d963bfbbc5a21afe44405fbd30ef4 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.4-py3-none-any.whl#sha256=2e92c80cbd3d89cf62d453968167c3ca312c5558c6dd24abcc46e99c39f6e3de (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.3.post1-py3-none-any.whl#sha256=cd231addd5891755b3f96f8a13e33d6d9836c24eb7161777dedd78fb8021264b (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.3-py3-none-any.whl#sha256=424e14b396d0e3869b469fc91f4c0205cfb80d5aa8bdb3da1e1d47ee497f2bf7 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,621 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.2-py3-none-any.whl#sha256=ea5c5fd052e7f29442e1f6599b5521e6bc8de30d34ca4e30f5e3fce0b5a1e171 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,622 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.1-py3-none-any.whl#sha256=1f1da817bd95d574fe5a400ba6c60855b1604d1d6b03472a501950db468863b5 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-09T22:40:20,622 Skipping link: not a file: https://www.piwheels.org/simple/peptides/ 2025-09-09T22:40:20,622 Skipping link: not a file: https://pypi.org/simple/peptides/ 2025-09-09T22:40:20,647 Given no hashes to check 1 links for project 'peptides': discarding no candidates 2025-09-09T22:40:20,648 Collecting peptides==0.2.0 2025-09-09T22:40:20,650 Created temporary directory: /tmp/pip-unpack-zx516dfk 2025-09-09T22:40:20,791 Downloading peptides-0.2.0.tar.gz (63 kB) 2025-09-09T22:40:20,928 Added peptides==0.2.0 from https://files.pythonhosted.org/packages/7b/60/de964d499d99c0b9eb5b688a149491bfb51b75c16a5acbe9faedb58fe456/peptides-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-flgcloi_' 2025-09-09T22:40:20,929 Running setup.py (path:/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py) egg_info for package peptides 2025-09-09T22:40:20,930 Created temporary directory: /tmp/pip-pip-egg-info-585x5xfr 2025-09-09T22:40:20,930 Preparing metadata (setup.py): started 2025-09-09T22:40:20,931 Running command python setup.py egg_info 2025-09-09T22:40:21,595 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T22:40:21,595 !! 2025-09-09T22:40:21,595 ******************************************************************************** 2025-09-09T22:40:21,595 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T22:40:21,596 License :: OSI Approved :: MIT License 2025-09-09T22:40:21,596 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T22:40:21,596 ******************************************************************************** 2025-09-09T22:40:21,596 !! 2025-09-09T22:40:21,596 self._finalize_license_expression() 2025-09-09T22:40:21,611 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T22:40:21,612 !! 2025-09-09T22:40:21,612 ******************************************************************************** 2025-09-09T22:40:21,612 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T22:40:21,612 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T22:40:21,612 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T22:40:21,612 or your builds will no longer be supported. 2025-09-09T22:40:21,612 ******************************************************************************** 2025-09-09T22:40:21,613 !! 2025-09-09T22:40:21,613 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T22:40:24,879 running egg_info 2025-09-09T22:40:24,955 creating /tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info 2025-09-09T22:40:24,955 writing /tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/PKG-INFO 2025-09-09T22:40:24,956 writing dependency_links to /tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/dependency_links.txt 2025-09-09T22:40:24,957 writing top-level names to /tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/top_level.txt 2025-09-09T22:40:24,957 writing manifest file '/tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/SOURCES.txt' 2025-09-09T22:40:25,107 reading manifest file '/tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/SOURCES.txt' 2025-09-09T22:40:25,108 reading manifest template 'MANIFEST.in' 2025-09-09T22:40:25,109 warning: no files found matching 'pyproject.toml' 2025-09-09T22:40:25,120 warning: no previously-included files found matching 'peptides/tables/__init__.py' 2025-09-09T22:40:25,121 warning: no previously-included files found matching 'peptides/datasets/__init__.py' 2025-09-09T22:40:25,121 no previously-included directories found matching 'tests' 2025-09-09T22:40:25,122 adding license file 'COPYING' 2025-09-09T22:40:25,127 writing manifest file '/tmp/pip-pip-egg-info-585x5xfr/peptides.egg-info/SOURCES.txt' 2025-09-09T22:40:25,243 Preparing metadata (setup.py): finished with status 'done' 2025-09-09T22:40:25,248 Source in /tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7 has version 0.2.0, which satisfies requirement peptides==0.2.0 from https://files.pythonhosted.org/packages/7b/60/de964d499d99c0b9eb5b688a149491bfb51b75c16a5acbe9faedb58fe456/peptides-0.2.0.tar.gz 2025-09-09T22:40:25,248 Removed peptides==0.2.0 from https://files.pythonhosted.org/packages/7b/60/de964d499d99c0b9eb5b688a149491bfb51b75c16a5acbe9faedb58fe456/peptides-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-flgcloi_' 2025-09-09T22:40:25,254 Created temporary directory: /tmp/pip-unpack-volh89d2 2025-09-09T22:40:25,255 Created temporary directory: /tmp/pip-unpack-utoa0egj 2025-09-09T22:40:25,255 Building wheels for collected packages: peptides 2025-09-09T22:40:25,256 Created temporary directory: /tmp/pip-wheel-waayyqui 2025-09-09T22:40:25,257 DEPRECATION: Building 'peptides' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'peptides'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-09T22:40:25,258 Building wheel for peptides (setup.py): started 2025-09-09T22:40:25,259 Destination directory: /tmp/pip-wheel-waayyqui 2025-09-09T22:40:25,259 Running command python setup.py bdist_wheel 2025-09-09T22:40:25,937 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T22:40:25,937 !! 2025-09-09T22:40:25,937 ******************************************************************************** 2025-09-09T22:40:25,938 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T22:40:25,938 License :: OSI Approved :: MIT License 2025-09-09T22:40:25,938 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T22:40:25,938 ******************************************************************************** 2025-09-09T22:40:25,938 !! 2025-09-09T22:40:25,938 self._finalize_license_expression() 2025-09-09T22:40:25,953 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T22:40:25,954 !! 2025-09-09T22:40:25,954 ******************************************************************************** 2025-09-09T22:40:25,954 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T22:40:25,954 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T22:40:25,954 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T22:40:25,954 or your builds will no longer be supported. 2025-09-09T22:40:25,954 ******************************************************************************** 2025-09-09T22:40:25,955 !! 2025-09-09T22:40:25,955 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T22:40:26,866 running bdist_wheel 2025-09-09T22:40:27,240 running build 2025-09-09T22:40:27,240 running build_py 2025-09-09T22:40:27,246 Traceback (most recent call last): 2025-09-09T22:40:27,246 File "/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py", line 16, in 2025-09-09T22:40:27,246 import astor 2025-09-09T22:40:27,246 ModuleNotFoundError: No module named 'astor' 2025-09-09T22:40:27,246 The above exception was the direct cause of the following exception: 2025-09-09T22:40:27,247 Traceback (most recent call last): 2025-09-09T22:40:27,252 File "", line 2, in 2025-09-09T22:40:27,252 exec(compile(''' 2025-09-09T22:40:27,252 ~~~~^^^^^^^^^^^^ 2025-09-09T22:40:27,252 # This is -- a caller that pip uses to run setup.py 2025-09-09T22:40:27,252 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T22:40:27,252 ...<32 lines>... 2025-09-09T22:40:27,252 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T22:40:27,252 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T22:40:27,253 ''' % ('/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py',), "", "exec")) 2025-09-09T22:40:27,253 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T22:40:27,253 File "", line 35, in 2025-09-09T22:40:27,253 File "/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py", line 202, in 2025-09-09T22:40:27,253 setuptools.setup(cmdclass=dict(build_py=build_py, codegen=codegen)) 2025-09-09T22:40:27,253 ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-09T22:40:27,253 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-09T22:40:27,253 return distutils.core.setup(**attrs) 2025-09-09T22:40:27,254 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,254 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-09T22:40:27,254 return run_commands(dist) 2025-09-09T22:40:27,254 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-09T22:40:27,254 dist.run_commands() 2025-09-09T22:40:27,254 ~~~~~~~~~~~~~~~~~^^ 2025-09-09T22:40:27,254 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-09T22:40:27,254 self.run_command(cmd) 2025-09-09T22:40:27,254 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-09T22:40:27,255 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T22:40:27,255 super().run_command(command) 2025-09-09T22:40:27,255 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,255 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T22:40:27,255 cmd_obj.run() 2025-09-09T22:40:27,255 ~~~~~~~~~~~^^ 2025-09-09T22:40:27,255 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-09T22:40:27,255 self.run_command("build") 2025-09-09T22:40:27,255 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,256 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-09T22:40:27,256 self.distribution.run_command(command) 2025-09-09T22:40:27,256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,256 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T22:40:27,256 super().run_command(command) 2025-09-09T22:40:27,256 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,256 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T22:40:27,256 cmd_obj.run() 2025-09-09T22:40:27,257 ~~~~~~~~~~~^^ 2025-09-09T22:40:27,257 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-09T22:40:27,257 self.run_command(cmd_name) 2025-09-09T22:40:27,257 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-09T22:40:27,257 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-09T22:40:27,257 self.distribution.run_command(command) 2025-09-09T22:40:27,257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,257 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-09T22:40:27,257 super().run_command(command) 2025-09-09T22:40:27,257 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-09T22:40:27,258 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-09T22:40:27,258 cmd_obj.run() 2025-09-09T22:40:27,258 ~~~~~~~~~~~^^ 2025-09-09T22:40:27,258 File "/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py", line 196, in run 2025-09-09T22:40:27,258 _codegen.run() 2025-09-09T22:40:27,258 ~~~~~~~~~~~~^^ 2025-09-09T22:40:27,258 File "/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py", line 170, in run 2025-09-09T22:40:27,258 raise RuntimeError("`astor` package is required for the `codegen` command") from astor 2025-09-09T22:40:27,259 RuntimeError: `astor` package is required for the `codegen` command 2025-09-09T22:40:27,370 ERROR: python setup.py bdist_wheel exited with 1 2025-09-09T22:40:27,383 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-09T22:40:27,383 exec(compile('"'"''"'"''"'"' 2025-09-09T22:40:27,383 # This is -- a caller that pip uses to run setup.py 2025-09-09T22:40:27,383 # 2025-09-09T22:40:27,383 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-09T22:40:27,383 # import from `distutils.core` to work with newer packaging standards. 2025-09-09T22:40:27,383 # - It provides a clear error message when setuptools is not installed. 2025-09-09T22:40:27,383 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-09T22:40:27,383 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-09T22:40:27,383 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-09T22:40:27,383 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-09T22:40:27,383 import os, sys, tokenize, traceback 2025-09-09T22:40:27,383 2025-09-09T22:40:27,383 try: 2025-09-09T22:40:27,383 import setuptools 2025-09-09T22:40:27,383 except ImportError: 2025-09-09T22:40:27,383 print( 2025-09-09T22:40:27,383 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-09T22:40:27,383 "the build environment with exception:", 2025-09-09T22:40:27,383 file=sys.stderr, 2025-09-09T22:40:27,383 ) 2025-09-09T22:40:27,383 traceback.print_exc() 2025-09-09T22:40:27,383 sys.exit(1) 2025-09-09T22:40:27,383 2025-09-09T22:40:27,383 __file__ = %r 2025-09-09T22:40:27,383 sys.argv[0] = __file__ 2025-09-09T22:40:27,383 2025-09-09T22:40:27,383 if os.path.exists(__file__): 2025-09-09T22:40:27,383 filename = __file__ 2025-09-09T22:40:27,383 with tokenize.open(__file__) as f: 2025-09-09T22:40:27,383 setup_py_code = f.read() 2025-09-09T22:40:27,383 else: 2025-09-09T22:40:27,383 filename = "" 2025-09-09T22:40:27,383 setup_py_code = "from setuptools import setup; setup()" 2025-09-09T22:40:27,383 2025-09-09T22:40:27,383 exec(compile(setup_py_code, filename, "exec")) 2025-09-09T22:40:27,383 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-waayyqui[/] 2025-09-09T22:40:27,383 [bold magenta]cwd[/]: /tmp/pip-wheel-zolhid9c/peptides_0229e92658204710841f6bd842b511c7/ 2025-09-09T22:40:27,383 Building wheel for peptides (setup.py): finished with status 'error' 2025-09-09T22:40:27,384 ERROR: Failed building wheel for peptides 2025-09-09T22:40:27,385 Running setup.py clean for peptides 2025-09-09T22:40:27,386 Running command python setup.py clean 2025-09-09T22:40:28,066 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-09T22:40:28,066 !! 2025-09-09T22:40:28,066 ******************************************************************************** 2025-09-09T22:40:28,066 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-09T22:40:28,067 License :: OSI Approved :: MIT License 2025-09-09T22:40:28,067 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-09T22:40:28,067 ******************************************************************************** 2025-09-09T22:40:28,067 !! 2025-09-09T22:40:28,067 self._finalize_license_expression() 2025-09-09T22:40:28,082 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-09T22:40:28,082 !! 2025-09-09T22:40:28,082 ******************************************************************************** 2025-09-09T22:40:28,082 Requirements should be satisfied by a PEP 517 installer. 2025-09-09T22:40:28,083 If you are using pip, you can try `pip install --use-pep517`. 2025-09-09T22:40:28,083 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-09T22:40:28,083 or your builds will no longer be supported. 2025-09-09T22:40:28,083 ******************************************************************************** 2025-09-09T22:40:28,083 !! 2025-09-09T22:40:28,083 dist.fetch_build_eggs(dist.setup_requires) 2025-09-09T22:40:29,067 running clean 2025-09-09T22:40:29,214 'build/lib' does not exist -- can't clean it 2025-09-09T22:40:29,215 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-09T22:40:29,215 'build/scripts-3.13' does not exist -- can't clean it 2025-09-09T22:40:29,329 Failed to build peptides 2025-09-09T22:40:29,330 ERROR: Failed to build one or more wheels 2025-09-09T22:40:29,331 Exception information: 2025-09-09T22:40:29,331 Traceback (most recent call last): 2025-09-09T22:40:29,331 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-09T22:40:29,331 status = _inner_run() 2025-09-09T22:40:29,331 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-09T22:40:29,331 return self.run(options, args) 2025-09-09T22:40:29,331 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-09T22:40:29,331 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-09T22:40:29,331 return func(self, options, args) 2025-09-09T22:40:29,331 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-09T22:40:29,331 raise CommandError("Failed to build one or more wheels") 2025-09-09T22:40:29,331 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-09T22:40:29,335 Removed build tracker: '/tmp/pip-build-tracker-flgcloi_'