2025-09-10T02:38:43,784 Created temporary directory: /tmp/pip-build-tracker-debyp82j 2025-09-10T02:38:43,785 Initialized build tracking at /tmp/pip-build-tracker-debyp82j 2025-09-10T02:38:43,785 Created build tracker: /tmp/pip-build-tracker-debyp82j 2025-09-10T02:38:43,785 Entered build tracker: /tmp/pip-build-tracker-debyp82j 2025-09-10T02:38:43,785 Created temporary directory: /tmp/pip-wheel-wog5nx5c 2025-09-10T02:38:43,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-j_6y8ssy 2025-09-10T02:38:43,845 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T02:38:43,848 2 location(s) to search for versions of lhc-python: 2025-09-10T02:38:43,848 * https://pypi.org/simple/lhc-python/ 2025-09-10T02:38:43,848 * https://www.piwheels.org/simple/lhc-python/ 2025-09-10T02:38:43,848 Fetching project page and analyzing links: https://pypi.org/simple/lhc-python/ 2025-09-10T02:38:43,848 Getting page https://pypi.org/simple/lhc-python/ 2025-09-10T02:38:43,850 Found index url https://pypi.org/simple/ 2025-09-10T02:38:43,997 Fetched page https://pypi.org/simple/lhc-python/ as application/vnd.pypi.simple.v1+json 2025-09-10T02:38:44,009 Found link https://files.pythonhosted.org/packages/20/4d/bcfad057cf7e5ed81328ef0610bc25252402409ca94ba348d5b5752eb976/lhc-python-1.1.1.zip (from https://pypi.org/simple/lhc-python/), version: 1.1.1 2025-09-10T02:38:44,009 Found link https://files.pythonhosted.org/packages/e7/a6/76eb4a8bab55d03b619571bc2116566506cc2e7ce7460f157143b2567850/lhc-python-1.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.2 2025-09-10T02:38:44,010 Found link https://files.pythonhosted.org/packages/03/2c/263a9b1a6156f88c8646c14b4c76dfe68db2acd3969f415360425a4a4c8b/lhc-python-1.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.4 2025-09-10T02:38:44,010 Found link https://files.pythonhosted.org/packages/77/15/0f7890596b67965f3756409e62171d917a41dff58add86e8bc8f0288d795/lhc-python-1.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.5 2025-09-10T02:38:44,011 Found link https://files.pythonhosted.org/packages/c9/54/dba9993c22f589d368dc6ceac40e97950a8c9d17752d56bdfcf4258b7ff3/lhc-python-1.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.6 2025-09-10T02:38:44,011 Found link https://files.pythonhosted.org/packages/3e/3e/3c07514aaed13cb82e26335ce97c335e9fd03c2722da0411a94c199aea2c/lhc-python-1.2.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.1 2025-09-10T02:38:44,012 Found link https://files.pythonhosted.org/packages/d8/5d/9c598e5688faddf029d1a3b937f6ef06a8f4dfaa658f2a02461a8f9bfefb/lhc-python-1.2.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.2 2025-09-10T02:38:44,012 Found link 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https://files.pythonhosted.org/packages/84/46/1e7d026008a62d75f4d1f2472238aaff1f0640b56847cabff90fbeb5be52/lhc-python-2.1.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.3 2025-09-10T02:38:44,020 Found link https://files.pythonhosted.org/packages/22/1b/2b6c832c9daa4415fac59998f62d8550b5b27c7d58eaad7831d892c868c0/lhc-python-2.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.4 2025-09-10T02:38:44,020 Found link https://files.pythonhosted.org/packages/fb/37/c48870f38b0f8ef9e7176578ac19b147d029b4c803a215abba653200bc81/lhc-python-2.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.5 2025-09-10T02:38:44,020 Found link https://files.pythonhosted.org/packages/eb/d8/3643ac239d95d3aa912de2fa42ca9d19ace2c808fd6e3544c59fc3d42f5d/lhc-python-2.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.6 2025-09-10T02:38:44,021 Found link 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https://files.pythonhosted.org/packages/35/65/0c81d0a68bce1ad009b36e2dcea7376b9b075cc3e0078d0c90a3e5b835aa/lhc-python-2.3.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.1 2025-09-10T02:38:44,022 Found link https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.5.0 2025-09-10T02:38:44,022 Found link https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz (from https://pypi.org/simple/lhc-python/) (requires-python:>=3.0), version: 2.5.1 2025-09-10T02:38:44,023 Fetching project page and analyzing links: https://www.piwheels.org/simple/lhc-python/ 2025-09-10T02:38:44,023 Getting page https://www.piwheels.org/simple/lhc-python/ 2025-09-10T02:38:44,024 Found index url https://www.piwheels.org/simple/ 2025-09-10T02:38:44,126 Fetched page 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Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,134 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,134 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,134 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-python-py3-none-any.whl#sha256=deb5c0ee519268ff09ca32fc2b3290795790aadd6a94266e3e4740405ca3860a (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-0.0.0-py3-none-any.whl#sha256=4e6ea2cdd256aff52b5c9f8be9561e908881fc9bd1410aeba0a6de7314943875 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.8-py3-none-any.whl#sha256=f9723dff85a195da072299de362ce59c8d78ad8e6f6ce3c50f0ad86f76dc1191 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.7-py3-none-any.whl#sha256=2e265c9621fce0bbf8256fd10eedc5702068b49cdad1c35ecf5472f636d71b6a (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,135 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.6-py3-none-any.whl#sha256=c9c7368cf2cf8c6bc41386185f20ee192bda870b2a8435396edebd0137a93deb (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.5-py3-none-any.whl#sha256=a7d94751ffac710ba149d64225d9baabe5483de0f2962e7d8e69693747c4d02f (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.4-py3-none-any.whl#sha256=4d6654477c0c4b950069859178d13e0cda55d662710788d85785127f835b56dd (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.3-py3-none-any.whl#sha256=f48dd77f42e9a1bce9b146c899672e708f821dd99a9387bc003ddb7bae7f85f5 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.2-py3-none-any.whl#sha256=35e2ae84128c5e5468e11b45074afffd45cc2cbcf67c85390e7da88c2e7d45fd (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.1-py3-none-any.whl#sha256=81d19c382e5b599d59572d40e693021169e5e1ac75d2a2fc01d121f4730cd0a1 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.3.0-py3-none-any.whl#sha256=5f8d7359e1266989d96923f003d01754bdf0ec69ca33c1090f90a02738891e2e (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,136 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.6-py3-none-any.whl#sha256=d298acc485624c198c5bbc63fde139cb0d68d3a0485689978db8389643b2234f (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.5-py3-none-any.whl#sha256=c2a95400b7accd32f33010761938fb7faa2d56c68a184b45905077eac5539acc (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.4-py3-none-any.whl#sha256=a27467fd63e9d8aa1b8bbafa2afdbeec1fa9ad4de10c42232f39dfdf58140fc1 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.3-py3-none-any.whl#sha256=95fd10f8114946d0853912946df0e975e89f7941f05fe76a536486df5d2eb2df (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.2-py3-none-any.whl#sha256=dcb66868d70a0f2278bc5581da822e48001a6ce2e942597e910a444401169977 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.2.1-py3-none-any.whl#sha256=cce46dbf75b349c6d1a1e07137fcb53d43db81db44cca36018feb51402d1ee63 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,137 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.1.6-py3-none-any.whl#sha256=186631a6f058bcea60cab0617672fbdf0622ca248f93fe4ba0fcd5b99e81e155 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,138 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.1.5-py3-none-any.whl#sha256=edfeded10bbaebc6d2ae8d7f2a884c6d3f5e6f5fecf24464876f924a3d1345f5 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,138 Skipping link: No binaries permitted for lhc-python: https://archive1.piwheels.org/simple/lhc-python/lhc_python-1.1.4-py3-none-any.whl#sha256=d32211a85640f4a17ff83662d611e5f83b67c896923f1375f71b638fa4d3b6d7 (from https://www.piwheels.org/simple/lhc-python/) 2025-09-10T02:38:44,138 Skipping link: not a file: https://www.piwheels.org/simple/lhc-python/ 2025-09-10T02:38:44,138 Skipping link: not a file: https://pypi.org/simple/lhc-python/ 2025-09-10T02:38:44,167 Given no hashes to check 1 links for project 'lhc-python': discarding no candidates 2025-09-10T02:38:44,168 Collecting lhc-python==2.5.0 2025-09-10T02:38:44,169 Created temporary directory: /tmp/pip-unpack-22sqqbj2 2025-09-10T02:38:44,310 Downloading lhc-python-2.5.0.tar.gz (95 kB) 2025-09-10T02:38:44,499 Added lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-debyp82j' 2025-09-10T02:38:44,500 Running setup.py (path:/tmp/pip-wheel-wog5nx5c/lhc-python_4e959b3c234a4a4c8b9609962b700e1e/setup.py) egg_info for package lhc-python 2025-09-10T02:38:44,500 Created temporary directory: /tmp/pip-pip-egg-info-eqz7jo1j 2025-09-10T02:38:44,500 Preparing metadata (setup.py): started 2025-09-10T02:38:44,501 Running command python setup.py egg_info 2025-09-10T02:38:45,445 running egg_info 2025-09-10T02:38:45,522 creating /tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info 2025-09-10T02:38:45,522 writing /tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/PKG-INFO 2025-09-10T02:38:45,524 writing dependency_links to /tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/dependency_links.txt 2025-09-10T02:38:45,524 writing requirements to /tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/requires.txt 2025-09-10T02:38:45,525 writing top-level names to /tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/top_level.txt 2025-09-10T02:38:45,525 writing manifest file '/tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/SOURCES.txt' 2025-09-10T02:38:45,992 reading manifest file '/tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/SOURCES.txt' 2025-09-10T02:38:45,993 reading manifest template 'MANIFEST.in' 2025-09-10T02:38:45,994 warning: no files found matching '*.txt' under directory 'docs' 2025-09-10T02:38:45,995 adding license file 'LICENSE.txt' 2025-09-10T02:38:46,001 writing manifest file '/tmp/pip-pip-egg-info-eqz7jo1j/lhc_python.egg-info/SOURCES.txt' 2025-09-10T02:38:46,111 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T02:38:46,116 Source in /tmp/pip-wheel-wog5nx5c/lhc-python_4e959b3c234a4a4c8b9609962b700e1e has version 2.5.0, which satisfies requirement lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz 2025-09-10T02:38:46,116 Removed lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-debyp82j' 2025-09-10T02:38:46,120 Created temporary directory: /tmp/pip-unpack-marb4y7f 2025-09-10T02:38:46,121 Created temporary directory: /tmp/pip-unpack-0_8og776 2025-09-10T02:38:46,121 Building wheels for collected packages: lhc-python 2025-09-10T02:38:46,122 Created temporary directory: /tmp/pip-wheel-pr3yib32 2025-09-10T02:38:46,123 DEPRECATION: Building 'lhc-python' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'lhc-python'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T02:38:46,124 Building wheel for lhc-python (setup.py): started 2025-09-10T02:38:46,124 Destination directory: /tmp/pip-wheel-pr3yib32 2025-09-10T02:38:46,124 Running command python setup.py bdist_wheel 2025-09-10T02:38:46,962 running bdist_wheel 2025-09-10T02:38:47,480 running build 2025-09-10T02:38:47,480 running build_py 2025-09-10T02:38:47,550 creating build/lib.linux-armv7l-cpython-313/lhc 2025-09-10T02:38:47,550 copying lhc/order.py -> build/lib.linux-armv7l-cpython-313/lhc 2025-09-10T02:38:47,551 copying lhc/math.py -> build/lib.linux-armv7l-cpython-313/lhc 2025-09-10T02:38:47,551 copying lhc/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc 2025-09-10T02:38:47,552 creating build/lib.linux-armv7l-cpython-313/lhc/tools 2025-09-10T02:38:47,552 copying lhc/tools/tokeniser.py -> build/lib.linux-armv7l-cpython-313/lhc/tools 2025-09-10T02:38:47,553 copying lhc/tools/sorter.py -> build/lib.linux-armv7l-cpython-313/lhc/tools 2025-09-10T02:38:47,553 copying lhc/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/tools 2025-09-10T02:38:47,554 creating build/lib.linux-armv7l-cpython-313/lhc/random 2025-09-10T02:38:47,554 copying lhc/random/reservoir.py -> build/lib.linux-armv7l-cpython-313/lhc/random 2025-09-10T02:38:47,555 copying lhc/random/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/random 2025-09-10T02:38:47,556 creating build/lib.linux-armv7l-cpython-313/lhc/misc 2025-09-10T02:38:47,556 copying lhc/misc/tools.py -> build/lib.linux-armv7l-cpython-313/lhc/misc 2025-09-10T02:38:47,556 copying lhc/misc/string.py -> build/lib.linux-armv7l-cpython-313/lhc/misc 2025-09-10T02:38:47,557 copying lhc/misc/performance_measures.py -> build/lib.linux-armv7l-cpython-313/lhc/misc 2025-09-10T02:38:47,557 copying lhc/misc/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/misc 2025-09-10T02:38:47,558 creating build/lib.linux-armv7l-cpython-313/lhc/itertools 2025-09-10T02:38:47,558 copying lhc/itertools/sorted_iterator_merger.py -> build/lib.linux-armv7l-cpython-313/lhc/itertools 2025-09-10T02:38:47,559 copying lhc/itertools/merge_sorted.py -> build/lib.linux-armv7l-cpython-313/lhc/itertools 2025-09-10T02:38:47,559 copying lhc/itertools/chunked_iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/itertools 2025-09-10T02:38:47,560 copying lhc/itertools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/itertools 2025-09-10T02:38:47,561 creating build/lib.linux-armv7l-cpython-313/lhc/io 2025-09-10T02:38:47,561 copying lhc/io/file.py -> build/lib.linux-armv7l-cpython-313/lhc/io 2025-09-10T02:38:47,561 copying lhc/io/cut.py -> build/lib.linux-armv7l-cpython-313/lhc/io 2025-09-10T02:38:47,562 copying lhc/io/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io 2025-09-10T02:38:47,563 creating build/lib.linux-armv7l-cpython-313/lhc/intervaltools 2025-09-10T02:38:47,563 copying lhc/intervaltools/set.py -> build/lib.linux-armv7l-cpython-313/lhc/intervaltools 2025-09-10T02:38:47,563 copying lhc/intervaltools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/intervaltools 2025-09-10T02:38:47,564 creating build/lib.linux-armv7l-cpython-313/lhc/interval 2025-09-10T02:38:47,564 copying lhc/interval/interval.py -> build/lib.linux-armv7l-cpython-313/lhc/interval 2025-09-10T02:38:47,565 copying lhc/interval/binner.py -> build/lib.linux-armv7l-cpython-313/lhc/interval 2025-09-10T02:38:47,566 copying lhc/interval/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/interval 2025-09-10T02:38:47,566 creating build/lib.linux-armv7l-cpython-313/lhc/indices 2025-09-10T02:38:47,567 copying lhc/indices/tracked_index.py -> build/lib.linux-armv7l-cpython-313/lhc/indices 2025-09-10T02:38:47,567 copying lhc/indices/tbi.py -> build/lib.linux-armv7l-cpython-313/lhc/indices 2025-09-10T02:38:47,568 copying lhc/indices/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/indices 2025-09-10T02:38:47,568 creating build/lib.linux-armv7l-cpython-313/lhc/graph 2025-09-10T02:38:47,569 copying lhc/graph/n_partite_graph.py -> build/lib.linux-armv7l-cpython-313/lhc/graph 2025-09-10T02:38:47,569 copying lhc/graph/hyper_graph.py -> build/lib.linux-armv7l-cpython-313/lhc/graph 2025-09-10T02:38:47,570 copying lhc/graph/graph.py -> build/lib.linux-armv7l-cpython-313/lhc/graph 2025-09-10T02:38:47,570 copying lhc/graph/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/graph 2025-09-10T02:38:47,571 creating build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,571 copying lhc/filetools/shared_filepool.py -> build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,572 copying lhc/filetools/shared_file.py -> build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,572 copying lhc/filetools/shared_connection.py -> build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,573 copying lhc/filetools/filepool.py -> build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,573 copying lhc/filetools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/filetools 2025-09-10T02:38:47,574 creating build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,574 copying lhc/collections/tracked_set.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,575 copying lhc/collections/tracked_map.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,575 copying lhc/collections/multi_dimension_map.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,576 copying lhc/collections/interval_set.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,576 copying lhc/collections/interval_map.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,577 copying lhc/collections/inorder_access_set.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,577 copying lhc/collections/inorder_access_interval_set.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,578 copying lhc/collections/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/collections 2025-09-10T02:38:47,579 creating build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,579 copying lhc/binf/skew.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,579 copying lhc/binf/kmer.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,580 copying lhc/binf/iupac.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,580 copying lhc/binf/identifier.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,581 copying lhc/binf/genetic_code.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,581 copying lhc/binf/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf 2025-09-10T02:38:47,582 creating build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,582 copying lhc/io/vcf/set_.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,583 copying lhc/io/vcf/merger.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,583 copying lhc/io/vcf/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,584 copying lhc/io/vcf/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,585 copying lhc/io/vcf/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,585 copying lhc/io/vcf/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf 2025-09-10T02:38:47,586 creating build/lib.linux-armv7l-cpython-313/lhc/io/variant 2025-09-10T02:38:47,586 copying lhc/io/variant/vcf.py -> build/lib.linux-armv7l-cpython-313/lhc/io/variant 2025-09-10T02:38:47,587 copying lhc/io/variant/variant_file.py -> build/lib.linux-armv7l-cpython-313/lhc/io/variant 2025-09-10T02:38:47,587 copying lhc/io/variant/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/variant 2025-09-10T02:38:47,588 creating build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,588 copying lhc/io/txt/set_.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,589 copying lhc/io/txt/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,589 copying lhc/io/txt/indexed_set.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,590 copying lhc/io/txt/formatters.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,590 copying lhc/io/txt/format_parser.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,591 copying lhc/io/txt/filter.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,591 copying lhc/io/txt/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,592 copying lhc/io/txt/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt 2025-09-10T02:38:47,592 creating build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,593 copying lhc/io/sequence/sequence_file.py -> build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,593 copying lhc/io/sequence/fastq.py -> build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,594 copying lhc/io/sequence/fasta.py -> build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,594 copying lhc/io/sequence/embl.py -> build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,595 copying lhc/io/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/sequence 2025-09-10T02:38:47,596 creating build/lib.linux-armv7l-cpython-313/lhc/io/methpat 2025-09-10T02:38:47,596 copying lhc/io/methpat/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/methpat 2025-09-10T02:38:47,596 copying lhc/io/methpat/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/methpat 2025-09-10T02:38:47,597 creating build/lib.linux-armv7l-cpython-313/lhc/io/maf 2025-09-10T02:38:47,597 copying lhc/io/maf/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/maf 2025-09-10T02:38:47,598 copying lhc/io/maf/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/maf 2025-09-10T02:38:47,598 copying lhc/io/maf/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/maf 2025-09-10T02:38:47,599 copying lhc/io/maf/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/maf 2025-09-10T02:38:47,600 creating build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,600 copying lhc/io/locus/sam.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,601 copying lhc/io/locus/repeat_masker.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,601 copying lhc/io/locus/region.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,602 copying lhc/io/locus/paf.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,602 copying lhc/io/locus/locus_file.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,603 copying lhc/io/locus/gtf.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,603 copying lhc/io/locus/gff.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,604 copying lhc/io/locus/gbk.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,604 copying lhc/io/locus/embl.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,605 copying lhc/io/locus/bed.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,605 copying lhc/io/locus/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/locus 2025-09-10T02:38:47,606 creating build/lib.linux-armv7l-cpython-313/lhc/io/gbk 2025-09-10T02:38:47,606 copying lhc/io/gbk/sequence_set.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk 2025-09-10T02:38:47,607 copying lhc/io/gbk/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk 2025-09-10T02:38:47,607 copying lhc/io/gbk/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk 2025-09-10T02:38:47,608 copying lhc/io/gbk/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk 2025-09-10T02:38:47,609 creating build/lib.linux-armv7l-cpython-313/lhc/io/fastq 2025-09-10T02:38:47,609 copying lhc/io/fastq/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq 2025-09-10T02:38:47,609 copying lhc/io/fastq/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq 2025-09-10T02:38:47,610 copying lhc/io/fastq/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq 2025-09-10T02:38:47,611 creating build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,611 copying lhc/io/fasta/iterator.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,611 copying lhc/io/fasta/inorder_access_set.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,612 copying lhc/io/fasta/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,612 copying lhc/io/fasta/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,613 copying lhc/io/fasta/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta 2025-09-10T02:38:47,614 creating build/lib.linux-armv7l-cpython-313/lhc/io/alignment 2025-09-10T02:38:47,614 copying lhc/io/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/alignment 2025-09-10T02:38:47,615 creating build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,615 copying lhc/io/vcf/tools/trim_alt.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,616 copying lhc/io/vcf/tools/split_alt.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,616 copying lhc/io/vcf/tools/sort.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,617 copying lhc/io/vcf/tools/shift.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,617 copying lhc/io/vcf/tools/sample.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,618 copying lhc/io/vcf/tools/merge.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,618 copying lhc/io/vcf/tools/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,619 copying lhc/io/vcf/tools/filter.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,619 copying lhc/io/vcf/tools/difference.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,620 copying lhc/io/vcf/tools/compare.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,620 copying lhc/io/vcf/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/vcf/tools 2025-09-10T02:38:47,621 creating build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,621 copying lhc/io/txt/tools/sort.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,622 copying lhc/io/txt/tools/join.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,622 copying lhc/io/txt/tools/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,623 copying lhc/io/txt/tools/fetch.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,623 copying lhc/io/txt/tools/decompress.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,624 copying lhc/io/txt/tools/compress.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,624 copying lhc/io/txt/tools/check_format.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,625 copying lhc/io/txt/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/txt/tools 2025-09-10T02:38:47,626 creating build/lib.linux-armv7l-cpython-313/lhc/io/gbk/tools 2025-09-10T02:38:47,626 copying lhc/io/gbk/tools/split.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk/tools 2025-09-10T02:38:47,626 copying lhc/io/gbk/tools/extract.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk/tools 2025-09-10T02:38:47,627 copying lhc/io/gbk/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/gbk/tools 2025-09-10T02:38:47,628 creating build/lib.linux-armv7l-cpython-313/lhc/io/fastq/tools 2025-09-10T02:38:47,628 copying lhc/io/fastq/tools/split.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq/tools 2025-09-10T02:38:47,628 copying lhc/io/fastq/tools/filter.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq/tools 2025-09-10T02:38:47,629 copying lhc/io/fastq/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fastq/tools 2025-09-10T02:38:47,630 creating build/lib.linux-armv7l-cpython-313/lhc/io/fasta/tools 2025-09-10T02:38:47,630 copying lhc/io/fasta/tools/wrap.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta/tools 2025-09-10T02:38:47,630 copying lhc/io/fasta/tools/index.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta/tools 2025-09-10T02:38:47,631 copying lhc/io/fasta/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/io/fasta/tools 2025-09-10T02:38:47,632 creating build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,632 copying lhc/binf/variant/variant_effect.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,632 copying lhc/binf/variant/variant.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,633 copying lhc/binf/variant/codon_variant.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,633 copying lhc/binf/variant/coding_variant.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,634 copying lhc/binf/variant/amino_acid_variant.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,634 copying lhc/binf/variant/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,635 copying lhc/binf/variant/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant 2025-09-10T02:38:47,636 creating build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,636 copying lhc/binf/sequence/sequence_generator.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,637 copying lhc/binf/sequence/reverse_complement.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,637 copying lhc/binf/sequence/dicodonshuffle.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,638 copying lhc/binf/sequence/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,638 copying lhc/binf/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence 2025-09-10T02:38:47,639 creating build/lib.linux-armv7l-cpython-313/lhc/binf/misc 2025-09-10T02:38:47,639 copying lhc/binf/misc/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/misc 2025-09-10T02:38:47,640 copying lhc/binf/misc/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/misc 2025-09-10T02:38:47,640 creating build/lib.linux-armv7l-cpython-313/lhc/binf/loci 2025-09-10T02:38:47,641 copying lhc/binf/loci/make_loci.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci 2025-09-10T02:38:47,641 copying lhc/binf/loci/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci 2025-09-10T02:38:47,642 copying lhc/binf/loci/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci 2025-09-10T02:38:47,642 creating build/lib.linux-armv7l-cpython-313/lhc/binf/genomic_coordinate 2025-09-10T02:38:47,643 copying lhc/binf/genomic_coordinate/nested_genomic_interval.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/genomic_coordinate 2025-09-10T02:38:47,643 copying lhc/binf/genomic_coordinate/genomic_position.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/genomic_coordinate 2025-09-10T02:38:47,644 copying lhc/binf/genomic_coordinate/genomic_interval.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/genomic_coordinate 2025-09-10T02:38:47,644 copying lhc/binf/genomic_coordinate/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/genomic_coordinate 2025-09-10T02:38:47,645 creating build/lib.linux-armv7l-cpython-313/lhc/binf/alignment 2025-09-10T02:38:47,645 copying lhc/binf/alignment/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment 2025-09-10T02:38:47,646 copying lhc/binf/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment 2025-09-10T02:38:47,646 creating build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,647 copying lhc/binf/align/semiglobal_alignment.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,647 copying lhc/binf/align/score.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,648 copying lhc/binf/align/local_alignment.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,648 copying lhc/binf/align/global_alignment.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,649 copying lhc/binf/align/character_map.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,649 copying lhc/binf/align/alignment.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,650 copying lhc/binf/align/aligner.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,650 copying lhc/binf/align/__main__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,651 copying lhc/binf/align/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/align 2025-09-10T02:38:47,651 creating build/lib.linux-armv7l-cpython-313/lhc/binf/variant/tools 2025-09-10T02:38:47,652 copying lhc/binf/variant/tools/annotate.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant/tools 2025-09-10T02:38:47,652 copying lhc/binf/variant/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/variant/tools 2025-09-10T02:38:47,653 creating build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,653 copying lhc/binf/sequence/tools/view.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,654 copying lhc/binf/sequence/tools/unique.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,655 copying lhc/binf/sequence/tools/stat_.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,655 copying lhc/binf/sequence/tools/split.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,656 copying lhc/binf/sequence/tools/filter.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,656 copying lhc/binf/sequence/tools/extract.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,657 copying lhc/binf/sequence/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/tools 2025-09-10T02:38:47,657 creating build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/digen 2025-09-10T02:38:47,658 copying lhc/binf/sequence/digen/setup.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/digen 2025-09-10T02:38:47,658 copying lhc/binf/sequence/digen/digen.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/digen 2025-09-10T02:38:47,659 copying lhc/binf/sequence/digen/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/sequence/digen 2025-09-10T02:38:47,659 creating build/lib.linux-armv7l-cpython-313/lhc/binf/misc/tools 2025-09-10T02:38:47,660 copying lhc/binf/misc/tools/cs_to_table.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/misc/tools 2025-09-10T02:38:47,660 copying lhc/binf/misc/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/misc/tools 2025-09-10T02:38:47,661 creating build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,661 copying lhc/binf/loci/tools/view.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,662 copying lhc/binf/loci/tools/stats.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,662 copying lhc/binf/loci/tools/shear.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,663 copying lhc/binf/loci/tools/query.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,663 copying lhc/binf/loci/tools/kmer_filter.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,664 copying lhc/binf/loci/tools/generate.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,664 copying lhc/binf/loci/tools/flank.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,665 copying lhc/binf/loci/tools/filter.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,665 copying lhc/binf/loci/tools/extend.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,666 copying lhc/binf/loci/tools/deduplicate.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,666 copying lhc/binf/loci/tools/closest.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,667 copying lhc/binf/loci/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/loci/tools 2025-09-10T02:38:47,668 creating build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,668 copying lhc/binf/alignment/tools/trim_gaps.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,668 copying lhc/binf/alignment/tools/strand.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,669 copying lhc/binf/alignment/tools/mismatch_filter.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,669 copying lhc/binf/alignment/tools/get_consensus.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,670 copying lhc/binf/alignment/tools/call_variants.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,670 copying lhc/binf/alignment/tools/__init__.py -> build/lib.linux-armv7l-cpython-313/lhc/binf/alignment/tools 2025-09-10T02:38:47,671 running egg_info 2025-09-10T02:38:47,737 writing lhc_python.egg-info/PKG-INFO 2025-09-10T02:38:47,739 writing dependency_links to lhc_python.egg-info/dependency_links.txt 2025-09-10T02:38:47,739 writing requirements to lhc_python.egg-info/requires.txt 2025-09-10T02:38:47,740 writing top-level names to lhc_python.egg-info/top_level.txt 2025-09-10T02:38:47,833 reading manifest file 'lhc_python.egg-info/SOURCES.txt' 2025-09-10T02:38:47,845 reading manifest template 'MANIFEST.in' 2025-09-10T02:38:47,846 warning: no files found matching '*.txt' under directory 'docs' 2025-09-10T02:38:47,847 adding license file 'LICENSE.txt' 2025-09-10T02:38:47,856 writing manifest file 'lhc_python.egg-info/SOURCES.txt' 2025-09-10T02:38:47,858 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'lhc.data' is absent from the `packages` configuration. 2025-09-10T02:38:47,858 !! 2025-09-10T02:38:47,858 ******************************************************************************** 2025-09-10T02:38:47,858 ############################ 2025-09-10T02:38:47,858 # Package would be ignored # 2025-09-10T02:38:47,859 ############################ 2025-09-10T02:38:47,859 Python recognizes 'lhc.data' as an importable package[^1], 2025-09-10T02:38:47,859 but it is absent from setuptools' `packages` configuration. 2025-09-10T02:38:47,859 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-10T02:38:47,859 package, please make sure that 'lhc.data' is explicitly added 2025-09-10T02:38:47,859 to the `packages` configuration field. 2025-09-10T02:38:47,859 Alternatively, you can also rely on setuptools' discovery methods 2025-09-10T02:38:47,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-10T02:38:47,859 instead of `find_packages(...)`/`find:`). 2025-09-10T02:38:47,860 You can read more about "package discovery" on setuptools documentation page: 2025-09-10T02:38:47,860 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-10T02:38:47,860 If you don't want 'lhc.data' to be distributed and are 2025-09-10T02:38:47,860 already explicitly excluding 'lhc.data' via 2025-09-10T02:38:47,860 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-10T02:38:47,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-10T02:38:47,860 combination with a more fine grained `package-data` configuration. 2025-09-10T02:38:47,861 You can read more about "package data files" on setuptools documentation page: 2025-09-10T02:38:47,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-10T02:38:47,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-10T02:38:47,861 even if it does not contain any `.py` files. 2025-09-10T02:38:47,861 On the other hand, currently there is no concept of package data 2025-09-10T02:38:47,861 directory, all directories are treated like packages. 2025-09-10T02:38:47,861 ******************************************************************************** 2025-09-10T02:38:47,861 !! 2025-09-10T02:38:47,862 check.warn(importable) 2025-09-10T02:38:47,875 creating build/lib.linux-armv7l-cpython-313/lhc/data 2025-09-10T02:38:47,875 copying lhc/data/gc.prt -> build/lib.linux-armv7l-cpython-313/lhc/data 2025-09-10T02:38:47,885 running build_ext 2025-09-10T02:38:48,218 building 'lhc.misc.bitap' extension 2025-09-10T02:38:48,219 creating build/temp.linux-armv7l-cpython-313/lib/bitap 2025-09-10T02:38:48,219 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ilib/bitap -I/usr/include/python3.13 -c lib/bitap/bitap.cpp -o build/temp.linux-armv7l-cpython-313/lib/bitap/bitap.o 2025-09-10T02:38:48,274 lib/bitap/bitap.cpp:1:10: fatal error: bitap.h: No such file or directory 2025-09-10T02:38:48,275 1 | #include "bitap.h" 2025-09-10T02:38:48,275 | ^~~~~~~~~ 2025-09-10T02:38:48,275 compilation terminated. 2025-09-10T02:38:48,278 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2025-09-10T02:38:48,425 ERROR: python setup.py bdist_wheel exited with 1 2025-09-10T02:38:48,438 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-10T02:38:48,438 exec(compile('"'"''"'"''"'"' 2025-09-10T02:38:48,438 # This is -- a caller that pip uses to run setup.py 2025-09-10T02:38:48,438 # 2025-09-10T02:38:48,438 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-10T02:38:48,438 # import from `distutils.core` to work with newer packaging standards. 2025-09-10T02:38:48,438 # - It provides a clear error message when setuptools is not installed. 2025-09-10T02:38:48,438 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-10T02:38:48,438 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-10T02:38:48,438 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-10T02:38:48,438 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-10T02:38:48,438 import os, sys, tokenize, traceback 2025-09-10T02:38:48,438 2025-09-10T02:38:48,438 try: 2025-09-10T02:38:48,438 import setuptools 2025-09-10T02:38:48,438 except ImportError: 2025-09-10T02:38:48,438 print( 2025-09-10T02:38:48,438 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-10T02:38:48,438 "the build environment with exception:", 2025-09-10T02:38:48,438 file=sys.stderr, 2025-09-10T02:38:48,438 ) 2025-09-10T02:38:48,438 traceback.print_exc() 2025-09-10T02:38:48,438 sys.exit(1) 2025-09-10T02:38:48,438 2025-09-10T02:38:48,438 __file__ = %r 2025-09-10T02:38:48,438 sys.argv[0] = __file__ 2025-09-10T02:38:48,438 2025-09-10T02:38:48,438 if os.path.exists(__file__): 2025-09-10T02:38:48,438 filename = __file__ 2025-09-10T02:38:48,438 with tokenize.open(__file__) as f: 2025-09-10T02:38:48,438 setup_py_code = f.read() 2025-09-10T02:38:48,438 else: 2025-09-10T02:38:48,438 filename = "" 2025-09-10T02:38:48,438 setup_py_code = "from setuptools import setup; setup()" 2025-09-10T02:38:48,438 2025-09-10T02:38:48,438 exec(compile(setup_py_code, filename, "exec")) 2025-09-10T02:38:48,438 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wog5nx5c/lhc-python_4e959b3c234a4a4c8b9609962b700e1e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-pr3yib32[/] 2025-09-10T02:38:48,438 [bold magenta]cwd[/]: /tmp/pip-wheel-wog5nx5c/lhc-python_4e959b3c234a4a4c8b9609962b700e1e/ 2025-09-10T02:38:48,438 Building wheel for lhc-python (setup.py): finished with status 'error' 2025-09-10T02:38:48,439 ERROR: Failed building wheel for lhc-python 2025-09-10T02:38:48,440 Running setup.py clean for lhc-python 2025-09-10T02:38:48,441 Running command python setup.py clean 2025-09-10T02:38:49,321 running clean 2025-09-10T02:38:49,459 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-10T02:38:49,459 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-10T02:38:49,467 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-10T02:38:49,467 'build/scripts-3.13' does not exist -- can't clean it 2025-09-10T02:38:49,467 removing 'build' 2025-09-10T02:38:49,558 Failed to build lhc-python 2025-09-10T02:38:49,558 ERROR: Failed to build one or more wheels 2025-09-10T02:38:49,559 Exception information: 2025-09-10T02:38:49,559 Traceback (most recent call last): 2025-09-10T02:38:49,559 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-10T02:38:49,559 status = _inner_run() 2025-09-10T02:38:49,559 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-10T02:38:49,559 return self.run(options, args) 2025-09-10T02:38:49,559 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-10T02:38:49,559 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-10T02:38:49,559 return func(self, options, args) 2025-09-10T02:38:49,559 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-10T02:38:49,559 raise CommandError("Failed to build one or more wheels") 2025-09-10T02:38:49,559 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-10T02:38:49,563 Removed build tracker: '/tmp/pip-build-tracker-debyp82j'