2025-09-10T03:33:42,278 Created temporary directory: /tmp/pip-build-tracker-dzzdrfw6 2025-09-10T03:33:42,280 Initialized build tracking at /tmp/pip-build-tracker-dzzdrfw6 2025-09-10T03:33:42,280 Created build tracker: /tmp/pip-build-tracker-dzzdrfw6 2025-09-10T03:33:42,280 Entered build tracker: /tmp/pip-build-tracker-dzzdrfw6 2025-09-10T03:33:42,281 Created temporary directory: /tmp/pip-wheel-gvvhl7rc 2025-09-10T03:33:42,285 Created temporary directory: /tmp/pip-ephem-wheel-cache-c7i4cw74 2025-09-10T03:33:42,331 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T03:33:42,334 2 location(s) to search for versions of pyhmmsearch: 2025-09-10T03:33:42,334 * https://pypi.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,334 * https://www.piwheels.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,334 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,335 Getting page https://pypi.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,337 Found index url https://pypi.org/simple/ 2025-09-10T03:33:42,559 Fetched page https://pypi.org/simple/pyhmmsearch/ as application/vnd.pypi.simple.v1+json 2025-09-10T03:33:42,561 Found link https://files.pythonhosted.org/packages/7c/cd/98e7487244f17f47d7a59a6a51cb8cb802bc528f21fbb62eb7ed2dda2452/pyhmmsearch-2024.4.25.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.4.25 2025-09-10T03:33:42,561 Found link https://files.pythonhosted.org/packages/34/bf/bc47f02347063541a81bd46209fb17b6875ab825d8cf68b9c816b8cf3cef/pyhmmsearch-2024.6.6.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.6 2025-09-10T03:33:42,562 Found link https://files.pythonhosted.org/packages/c6/d7/463abf0dfa0f0a9b16ac48c227f3d01f1f508a5c2c4585e7a646e61674bf/pyhmmsearch-2024.6.7.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.7 2025-09-10T03:33:42,563 Found link https://files.pythonhosted.org/packages/57/74/322d4c5a5b7be11bef316d94eca10dbda1c119538ad59a9862934d486086/pyhmmsearch-2024.6.8.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.8 2025-09-10T03:33:42,563 Found link https://files.pythonhosted.org/packages/10/73/e68e753b30def427e22ffb413e813263a9e3e633dcbd0492e18a2e2f49ed/pyhmmsearch-2024.7.29.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.7.29 2025-09-10T03:33:42,564 Found link https://files.pythonhosted.org/packages/67/27/6d3da29d36bf24b680b7cfa688908600b2da6b6ed84e924eaa2c274b9078/pyhmmsearch-2024.10.18.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.18 2025-09-10T03:33:42,565 Found link https://files.pythonhosted.org/packages/d6/2e/c500ecf945ff7914e7e7208456b8393295a11ee5588826a3924032a6527a/pyhmmsearch-2024.10.20.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.20 2025-09-10T03:33:42,566 Found link https://files.pythonhosted.org/packages/03/7f/39f2b4c0c2178b3a6cf5a4abfb56bdb94c0cc428bd094f84dfc30b352e61/pyhmmsearch-2025.1.23.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.1.23 2025-09-10T03:33:42,567 Found link https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4 2025-09-10T03:33:42,567 Found link https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4.post1 2025-09-10T03:33:42,568 Found link https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.5 2025-09-10T03:33:42,569 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,569 Getting page https://www.piwheels.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,571 Found index url https://www.piwheels.org/simple/ 2025-09-10T03:33:42,737 Fetched page https://www.piwheels.org/simple/pyhmmsearch/ as text/html 2025-09-10T03:33:42,739 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.1.23-py3-none-any.whl#sha256=01541818335acf1bb63aacd9550b2a0693778ebab01c44a5e38a2f5378cb5efb (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,740 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.20-py3-none-any.whl#sha256=1ab100ddcf36d0e7e36089877fbab9b3aba84aac0bd1ba4592558ef552b014ac (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,741 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.18-py3-none-any.whl#sha256=c137db73e490f6c184a8839f86e0d3e656ef246bfdb33e92e20bfe9d3e2065ea (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,741 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.7.29-py3-none-any.whl#sha256=9d6e4f612bc54c2b8544ba0736d3ecd4077ad1903a240d3a3b21f1109023b5be (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,741 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.8-py3-none-any.whl#sha256=2aa87c32caa940ba9258c008b0068c85476ac26751885c44e8e88dd68d9b9a69 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,742 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.7-py3-none-any.whl#sha256=73b2ec6860fddad0f9486a3b2f37c53deec4318fa9e24e8e359c45258faf6749 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,742 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.6-py3-none-any.whl#sha256=879f7399d9f7a37b49e15a398ec51a93dd4a3685b0767a3d86f62fc23f4e5269 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,743 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.4.25-py3-none-any.whl#sha256=a394d806d600287765c3dd15b625b7f3e7b6c6d78c1155da6441060ceb803f6f (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-09-10T03:33:42,744 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,744 Skipping link: not a file: https://pypi.org/simple/pyhmmsearch/ 2025-09-10T03:33:42,763 Given no hashes to check 1 links for project 'pyhmmsearch': discarding no candidates 2025-09-10T03:33:42,764 Collecting pyhmmsearch==2025.9.4 2025-09-10T03:33:42,767 Created temporary directory: /tmp/pip-unpack-zinsagn2 2025-09-10T03:33:42,986 Downloading pyhmmsearch-2025.9.4.tar.gz (9.6 kB) 2025-09-10T03:33:43,023 Added pyhmmsearch==2025.9.4 from https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz to build tracker '/tmp/pip-build-tracker-dzzdrfw6' 2025-09-10T03:33:43,024 Running setup.py (path:/tmp/pip-wheel-gvvhl7rc/pyhmmsearch_07b8af657f4a44ee8143a1eca593498c/setup.py) egg_info for package pyhmmsearch 2025-09-10T03:33:43,025 Created temporary directory: /tmp/pip-pip-egg-info-rc7gemlt 2025-09-10T03:33:43,026 Preparing metadata (setup.py): started 2025-09-10T03:33:43,027 Running command python setup.py egg_info 2025-09-10T03:33:43,886 running egg_info 2025-09-10T03:33:43,913 creating /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info 2025-09-10T03:33:43,914 writing /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/PKG-INFO 2025-09-10T03:33:43,917 writing dependency_links to /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/dependency_links.txt 2025-09-10T03:33:43,919 writing entry points to /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/entry_points.txt 2025-09-10T03:33:43,920 writing requirements to /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/requires.txt 2025-09-10T03:33:43,921 writing top-level names to /tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/top_level.txt 2025-09-10T03:33:43,923 writing manifest file '/tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/SOURCES.txt' 2025-09-10T03:33:44,009 reading manifest file '/tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/SOURCES.txt' 2025-09-10T03:33:44,011 reading manifest template 'MANIFEST.in' 2025-09-10T03:33:44,013 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-10T03:33:44,014 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-10T03:33:44,014 warning: no previously-included files matching '*~' found anywhere in distribution 2025-09-10T03:33:44,015 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-09-10T03:33:44,015 adding license file 'LICENSE' 2025-09-10T03:33:44,018 writing manifest file '/tmp/pip-pip-egg-info-rc7gemlt/pyhmmsearch.egg-info/SOURCES.txt' 2025-09-10T03:33:44,122 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T03:33:44,126 Source in /tmp/pip-wheel-gvvhl7rc/pyhmmsearch_07b8af657f4a44ee8143a1eca593498c has version 2025.9.4, which satisfies requirement pyhmmsearch==2025.9.4 from https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz 2025-09-10T03:33:44,127 Removed pyhmmsearch==2025.9.4 from https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz from build tracker '/tmp/pip-build-tracker-dzzdrfw6' 2025-09-10T03:33:44,132 Created temporary directory: /tmp/pip-unpack-f7pqwrkc 2025-09-10T03:33:44,133 Created temporary directory: /tmp/pip-unpack-myetc_fq 2025-09-10T03:33:44,134 Building wheels for collected packages: pyhmmsearch 2025-09-10T03:33:44,138 Created temporary directory: /tmp/pip-wheel-0qgrn6i7 2025-09-10T03:33:44,139 DEPRECATION: Building 'pyhmmsearch' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyhmmsearch'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T03:33:44,140 Building wheel for pyhmmsearch (setup.py): started 2025-09-10T03:33:44,141 Destination directory: /tmp/pip-wheel-0qgrn6i7 2025-09-10T03:33:44,141 Running command python setup.py bdist_wheel 2025-09-10T03:33:44,950 running bdist_wheel 2025-09-10T03:33:45,080 running build 2025-09-10T03:33:45,081 running build_py 2025-09-10T03:33:45,111 creating build/lib/pyhmmsearch 2025-09-10T03:33:45,113 copying pyhmmsearch/serialize_hmm_models.py -> build/lib/pyhmmsearch 2025-09-10T03:33:45,116 copying pyhmmsearch/__init__.py -> build/lib/pyhmmsearch 2025-09-10T03:33:45,118 copying pyhmmsearch/reformat_pyhmmsearch.py -> build/lib/pyhmmsearch 2025-09-10T03:33:45,120 copying pyhmmsearch/pyhmmsearch.py -> build/lib/pyhmmsearch 2025-09-10T03:33:45,151 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T03:33:45,151 !! 2025-09-10T03:33:45,152 ******************************************************************************** 2025-09-10T03:33:45,153 Please avoid running ``setup.py`` directly. 2025-09-10T03:33:45,153 Instead, use pypa/build, pypa/installer or other 2025-09-10T03:33:45,154 standards-based tools. 2025-09-10T03:33:45,155 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T03:33:45,156 or your builds will no longer be supported. 2025-09-10T03:33:45,157 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T03:33:45,157 ******************************************************************************** 2025-09-10T03:33:45,159 !! 2025-09-10T03:33:45,159 self.initialize_options() 2025-09-10T03:33:45,180 installing to build/bdist.linux-armv7l/wheel 2025-09-10T03:33:45,180 running install 2025-09-10T03:33:45,204 running install_lib 2025-09-10T03:33:45,231 creating build/bdist.linux-armv7l/wheel 2025-09-10T03:33:45,233 creating build/bdist.linux-armv7l/wheel/pyhmmsearch 2025-09-10T03:33:45,234 copying build/lib/pyhmmsearch/serialize_hmm_models.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-09-10T03:33:45,236 copying build/lib/pyhmmsearch/__init__.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-09-10T03:33:45,238 copying build/lib/pyhmmsearch/reformat_pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-09-10T03:33:45,240 copying build/lib/pyhmmsearch/pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-09-10T03:33:45,242 running install_egg_info 2025-09-10T03:33:45,275 running egg_info 2025-09-10T03:33:45,302 writing pyhmmsearch.egg-info/PKG-INFO 2025-09-10T03:33:45,304 writing dependency_links to pyhmmsearch.egg-info/dependency_links.txt 2025-09-10T03:33:45,306 writing entry points to pyhmmsearch.egg-info/entry_points.txt 2025-09-10T03:33:45,307 writing requirements to pyhmmsearch.egg-info/requires.txt 2025-09-10T03:33:45,309 writing top-level names to pyhmmsearch.egg-info/top_level.txt 2025-09-10T03:33:45,337 reading manifest file 'pyhmmsearch.egg-info/SOURCES.txt' 2025-09-10T03:33:45,339 reading manifest template 'MANIFEST.in' 2025-09-10T03:33:45,341 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-10T03:33:45,342 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-10T03:33:45,343 warning: no previously-included files matching '*~' found anywhere in distribution 2025-09-10T03:33:45,343 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-09-10T03:33:45,344 adding license file 'LICENSE' 2025-09-10T03:33:45,346 writing manifest file 'pyhmmsearch.egg-info/SOURCES.txt' 2025-09-10T03:33:45,348 Copying pyhmmsearch.egg-info to build/bdist.linux-armv7l/wheel/./pyhmmsearch-2025.9.4-py3.11.egg-info 2025-09-10T03:33:45,359 running install_scripts 2025-09-10T03:33:45,372 creating build/bdist.linux-armv7l/wheel/pyhmmsearch-2025.9.4.dist-info/WHEEL 2025-09-10T03:33:45,374 creating '/tmp/pip-wheel-0qgrn6i7/pyhmmsearch-2025.9.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T03:33:45,376 adding 'pyhmmsearch/__init__.py' 2025-09-10T03:33:45,378 adding 'pyhmmsearch/pyhmmsearch.py' 2025-09-10T03:33:45,380 adding 'pyhmmsearch/reformat_pyhmmsearch.py' 2025-09-10T03:33:45,381 adding 'pyhmmsearch/serialize_hmm_models.py' 2025-09-10T03:33:45,384 adding 'pyhmmsearch-2025.9.4.dist-info/licenses/LICENSE' 2025-09-10T03:33:45,386 adding 'pyhmmsearch-2025.9.4.dist-info/METADATA' 2025-09-10T03:33:45,387 adding 'pyhmmsearch-2025.9.4.dist-info/WHEEL' 2025-09-10T03:33:45,388 adding 'pyhmmsearch-2025.9.4.dist-info/entry_points.txt' 2025-09-10T03:33:45,389 adding 'pyhmmsearch-2025.9.4.dist-info/top_level.txt' 2025-09-10T03:33:45,390 adding 'pyhmmsearch-2025.9.4.dist-info/RECORD' 2025-09-10T03:33:45,391 removing build/bdist.linux-armv7l/wheel 2025-09-10T03:33:45,501 Building wheel for pyhmmsearch (setup.py): finished with status 'done' 2025-09-10T03:33:45,504 Created wheel for pyhmmsearch: filename=pyhmmsearch-2025.9.4-py3-none-any.whl size=8937 sha256=5490d9457e1bd198733c098879e8e5be680705ac5fae57864c58683bb925f0f3 2025-09-10T03:33:45,505 Stored in directory: /tmp/pip-ephem-wheel-cache-c7i4cw74/wheels/21/e5/0b/9dc7ffce3d2398a1507051ba1da0149b491722e68fec843fa0 2025-09-10T03:33:45,515 Successfully built pyhmmsearch 2025-09-10T03:33:45,518 Removed build tracker: '/tmp/pip-build-tracker-dzzdrfw6'