2025-09-10T04:25:04,258 Created temporary directory: /tmp/pip-build-tracker-xrse_aev
2025-09-10T04:25:04,258 Initialized build tracking at /tmp/pip-build-tracker-xrse_aev
2025-09-10T04:25:04,259 Created build tracker: /tmp/pip-build-tracker-xrse_aev
2025-09-10T04:25:04,259 Entered build tracker: /tmp/pip-build-tracker-xrse_aev
2025-09-10T04:25:04,259 Created temporary directory: /tmp/pip-wheel-mxc80zxu
2025-09-10T04:25:04,262 Created temporary directory: /tmp/pip-ephem-wheel-cache-gm2oonor
2025-09-10T04:25:04,320 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-10T04:25:04,322 2 location(s) to search for versions of scipion-em-xlmtools:
2025-09-10T04:25:04,322 * https://pypi.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,322 * https://www.piwheels.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,322 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,323 Getting page https://pypi.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,324 Found index url https://pypi.org/simple/
2025-09-10T04:25:04,470 Fetched page https://pypi.org/simple/scipion-em-xlmtools/ as application/vnd.pypi.simple.v1+json
2025-09-10T04:25:04,472   Found link https://files.pythonhosted.org/packages/5a/e2/895468ea8f490576697d1ae330bf3fcf330299d7df19b8eebf3f40820953/scipion-em-xlmtools-1.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xlmtools/), version: 1.0.0
2025-09-10T04:25:04,472   Skipping link: No binaries permitted for scipion-em-xlmtools: https://files.pythonhosted.org/packages/83/ec/4b6e1ff8f35f0669155f9987cc1b8dd4687e9b3004db81513a8f628631ff/scipion_em_xlmtools-1.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xlmtools/)
2025-09-10T04:25:04,473 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,473 Getting page https://www.piwheels.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,475 Found index url https://www.piwheels.org/simple/
2025-09-10T04:25:04,578 Fetched page https://www.piwheels.org/simple/scipion-em-xlmtools/ as text/html
2025-09-10T04:25:04,578 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,579 Skipping link: not a file: https://pypi.org/simple/scipion-em-xlmtools/
2025-09-10T04:25:04,603 Given no hashes to check 1 links for project 'scipion-em-xlmtools': discarding no candidates
2025-09-10T04:25:04,605 Collecting scipion-em-xlmtools==1.0.0
2025-09-10T04:25:04,606   Created temporary directory: /tmp/pip-unpack-a5_u8lp6
2025-09-10T04:25:04,761   Downloading scipion-em-xlmtools-1.0.0.tar.gz (265 kB)
2025-09-10T04:25:04,833   Added scipion-em-xlmtools==1.0.0 from https://files.pythonhosted.org/packages/5a/e2/895468ea8f490576697d1ae330bf3fcf330299d7df19b8eebf3f40820953/scipion-em-xlmtools-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-xrse_aev'
2025-09-10T04:25:04,834   Running setup.py (path:/tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/setup.py) egg_info for package scipion-em-xlmtools
2025-09-10T04:25:04,835   Created temporary directory: /tmp/pip-pip-egg-info-uz7xox9x
2025-09-10T04:25:04,835   Preparing metadata (setup.py): started
2025-09-10T04:25:04,836   Running command python setup.py egg_info
2025-09-10T04:25:05,362   Traceback (most recent call last):
2025-09-10T04:25:05,364     File "<string>", line 2, in <module>
2025-09-10T04:25:05,364       exec(compile('''
2025-09-10T04:25:05,364       ~~~~^^^^^^^^^^^^
2025-09-10T04:25:05,364       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-10T04:25:05,364       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,365       ...<32 lines>...
2025-09-10T04:25:05,365       exec(compile(setup_py_code, filename, "exec"))
2025-09-10T04:25:05,365       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,365       ''' % ('/tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-10T04:25:05,365       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,365     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-10T04:25:05,365     File "/tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/setup.py", line 38, in <module>
2025-09-10T04:25:05,366       from xlmtools import __version__
2025-09-10T04:25:05,366     File "/tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/xlmtools/__init__.py", line 29, in <module>
2025-09-10T04:25:05,366       import pwem
2025-09-10T04:25:05,366   ModuleNotFoundError: No module named 'pwem'
2025-09-10T04:25:05,449   ERROR: python setup.py egg_info exited with 1
2025-09-10T04:25:05,461   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2025-09-10T04:25:05,461   exec(compile('"'"''"'"''"'"'
2025-09-10T04:25:05,461   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-10T04:25:05,461   #
2025-09-10T04:25:05,461   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-10T04:25:05,461   #   import from `distutils.core` to work with newer packaging standards.
2025-09-10T04:25:05,461   # - It provides a clear error message when setuptools is not installed.
2025-09-10T04:25:05,461   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-10T04:25:05,461   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-10T04:25:05,461   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-10T04:25:05,461   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-10T04:25:05,461   import os, sys, tokenize, traceback
2025-09-10T04:25:05,461   
2025-09-10T04:25:05,461   try:
2025-09-10T04:25:05,461       import setuptools
2025-09-10T04:25:05,461   except ImportError:
2025-09-10T04:25:05,461       print(
2025-09-10T04:25:05,461           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-10T04:25:05,461           "the build environment with exception:",
2025-09-10T04:25:05,461           file=sys.stderr,
2025-09-10T04:25:05,461       )
2025-09-10T04:25:05,461       traceback.print_exc()
2025-09-10T04:25:05,461       sys.exit(1)
2025-09-10T04:25:05,461   
2025-09-10T04:25:05,461   __file__ = %r
2025-09-10T04:25:05,461   sys.argv[0] = __file__
2025-09-10T04:25:05,461   
2025-09-10T04:25:05,461   if os.path.exists(__file__):
2025-09-10T04:25:05,461       filename = __file__
2025-09-10T04:25:05,461       with tokenize.open(__file__) as f:
2025-09-10T04:25:05,461           setup_py_code = f.read()
2025-09-10T04:25:05,461   else:
2025-09-10T04:25:05,461       filename = "<auto-generated setuptools caller>"
2025-09-10T04:25:05,461       setup_py_code = "from setuptools import setup; setup()"
2025-09-10T04:25:05,461   
2025-09-10T04:25:05,461   exec(compile(setup_py_code, filename, "exec"))
2025-09-10T04:25:05,461   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-uz7xox9x[/]
2025-09-10T04:25:05,461   [bold magenta]cwd[/]: /tmp/pip-wheel-mxc80zxu/scipion-em-xlmtools_c4c6ad6f6c674496b2d2bb2eb74e8b4f/
2025-09-10T04:25:05,461   Preparing metadata (setup.py): finished with status 'error'
2025-09-10T04:25:05,462 ERROR: metadata generation failed
2025-09-10T04:25:05,467 Exception information:
2025-09-10T04:25:05,467 Traceback (most recent call last):
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata
2025-09-10T04:25:05,467     call_subprocess(
2025-09-10T04:25:05,467     ~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         args,
2025-09-10T04:25:05,467         ^^^^^
2025-09-10T04:25:05,467     ...<2 lines>...
2025-09-10T04:25:05,467         spinner=spinner,
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess
2025-09-10T04:25:05,467     raise error
2025-09-10T04:25:05,467 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2025-09-10T04:25:05,467 
2025-09-10T04:25:05,467 The above exception was the direct cause of the following exception:
2025-09-10T04:25:05,467 
2025-09-10T04:25:05,467 Traceback (most recent call last):
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-10T04:25:05,467     status = _inner_run()
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-10T04:25:05,467     return self.run(options, args)
2025-09-10T04:25:05,467            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-10T04:25:05,467     return func(self, options, args)
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2025-09-10T04:25:05,467     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve
2025-09-10T04:25:05,467     result = self._result = resolver.resolve(
2025-09-10T04:25:05,467                             ~~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         collected.requirements, max_rounds=limit_how_complex_resolution_can_be
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve
2025-09-10T04:25:05,467     state = resolution.resolve(requirements, max_rounds=max_rounds)
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve
2025-09-10T04:25:05,467     self._add_to_criteria(self.state.criteria, r, parent=None)
2025-09-10T04:25:05,467     ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria
2025-09-10T04:25:05,467     if not criterion.candidates:
2025-09-10T04:25:05,467            ^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__
2025-09-10T04:25:05,467     return bool(self._sequence)
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__
2025-09-10T04:25:05,467     self._bool = any(self)
2025-09-10T04:25:05,467                  ~~~^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in <genexpr>
2025-09-10T04:25:05,467     return (c for c in iterator if id(c) not in self._incompatible_ids)
2025-09-10T04:25:05,467                        ^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built
2025-09-10T04:25:05,467     candidate = func()
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
2025-09-10T04:25:05,467     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2025-09-10T04:25:05,467                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         link, template, name, version
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
2025-09-10T04:25:05,467     self._link_candidate_cache[link] = LinkCandidate(
2025-09-10T04:25:05,467                                        ~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         link,
2025-09-10T04:25:05,467         ^^^^^
2025-09-10T04:25:05,467     ...<3 lines>...
2025-09-10T04:25:05,467         version=version,
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__
2025-09-10T04:25:05,467     super().__init__(
2025-09-10T04:25:05,467     ~~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         link=link,
2025-09-10T04:25:05,467         ^^^^^^^^^^
2025-09-10T04:25:05,467     ...<4 lines>...
2025-09-10T04:25:05,467         version=version,
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
2025-09-10T04:25:05,467     self.dist = self._prepare()
2025-09-10T04:25:05,467                 ~~~~~~~~~~~~~^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
2025-09-10T04:25:05,467     dist = self._prepare_distribution()
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution
2025-09-10T04:25:05,467     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2025-09-10T04:25:05,467            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement
2025-09-10T04:25:05,467     return self._prepare_linked_requirement(req, parallel_builds)
2025-09-10T04:25:05,467            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement
2025-09-10T04:25:05,467     dist = _get_prepared_distribution(
2025-09-10T04:25:05,467         req,
2025-09-10T04:25:05,467     ...<3 lines>...
2025-09-10T04:25:05,467         self.check_build_deps,
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
2025-09-10T04:25:05,467     abstract_dist.prepare_distribution_metadata(
2025-09-10T04:25:05,467     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         finder, build_isolation, check_build_deps
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata
2025-09-10T04:25:05,467     self.req.prepare_metadata()
2025-09-10T04:25:05,467     ~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata
2025-09-10T04:25:05,467     self.metadata_directory = generate_metadata_legacy(
2025-09-10T04:25:05,467                               ~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-10T04:25:05,467         build_env=self.build_env,
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     ...<3 lines>...
2025-09-10T04:25:05,467         details=details,
2025-09-10T04:25:05,467         ^^^^^^^^^^^^^^^^
2025-09-10T04:25:05,467     )
2025-09-10T04:25:05,467     ^
2025-09-10T04:25:05,467   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata
2025-09-10T04:25:05,467     raise MetadataGenerationFailed(package_details=details) from error
2025-09-10T04:25:05,467 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2025-09-10T04:25:05,488 Removed scipion-em-xlmtools==1.0.0 from https://files.pythonhosted.org/packages/5a/e2/895468ea8f490576697d1ae330bf3fcf330299d7df19b8eebf3f40820953/scipion-em-xlmtools-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-xrse_aev'
2025-09-10T04:25:05,488 Removed build tracker: '/tmp/pip-build-tracker-xrse_aev'