2025-09-10T04:43:52,711 Created temporary directory: /tmp/pip-build-tracker-vkyq6m7i
2025-09-10T04:43:52,712 Initialized build tracking at /tmp/pip-build-tracker-vkyq6m7i
2025-09-10T04:43:52,713 Created build tracker: /tmp/pip-build-tracker-vkyq6m7i
2025-09-10T04:43:52,713 Entered build tracker: /tmp/pip-build-tracker-vkyq6m7i
2025-09-10T04:43:52,714 Created temporary directory: /tmp/pip-wheel-h6e_wrxt
2025-09-10T04:43:52,718 Created temporary directory: /tmp/pip-ephem-wheel-cache-qb03q7gt
2025-09-10T04:43:52,765 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-10T04:43:52,768 2 location(s) to search for versions of pyhmmsearch:
2025-09-10T04:43:52,768 * https://pypi.org/simple/pyhmmsearch/
2025-09-10T04:43:52,768 * https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T04:43:52,768 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmsearch/
2025-09-10T04:43:52,769 Getting page https://pypi.org/simple/pyhmmsearch/
2025-09-10T04:43:52,771 Found index url https://pypi.org/simple/
2025-09-10T04:43:52,916 Fetched page https://pypi.org/simple/pyhmmsearch/ as application/vnd.pypi.simple.v1+json
2025-09-10T04:43:52,918   Found link https://files.pythonhosted.org/packages/7c/cd/98e7487244f17f47d7a59a6a51cb8cb802bc528f21fbb62eb7ed2dda2452/pyhmmsearch-2024.4.25.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.4.25
2025-09-10T04:43:52,919   Found link https://files.pythonhosted.org/packages/34/bf/bc47f02347063541a81bd46209fb17b6875ab825d8cf68b9c816b8cf3cef/pyhmmsearch-2024.6.6.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.6
2025-09-10T04:43:52,919   Found link https://files.pythonhosted.org/packages/c6/d7/463abf0dfa0f0a9b16ac48c227f3d01f1f508a5c2c4585e7a646e61674bf/pyhmmsearch-2024.6.7.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.7
2025-09-10T04:43:52,920   Found link https://files.pythonhosted.org/packages/57/74/322d4c5a5b7be11bef316d94eca10dbda1c119538ad59a9862934d486086/pyhmmsearch-2024.6.8.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.8
2025-09-10T04:43:52,921   Found link https://files.pythonhosted.org/packages/10/73/e68e753b30def427e22ffb413e813263a9e3e633dcbd0492e18a2e2f49ed/pyhmmsearch-2024.7.29.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.7.29
2025-09-10T04:43:52,921   Found link https://files.pythonhosted.org/packages/67/27/6d3da29d36bf24b680b7cfa688908600b2da6b6ed84e924eaa2c274b9078/pyhmmsearch-2024.10.18.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.18
2025-09-10T04:43:52,922   Found link https://files.pythonhosted.org/packages/d6/2e/c500ecf945ff7914e7e7208456b8393295a11ee5588826a3924032a6527a/pyhmmsearch-2024.10.20.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.20
2025-09-10T04:43:52,923   Found link https://files.pythonhosted.org/packages/03/7f/39f2b4c0c2178b3a6cf5a4abfb56bdb94c0cc428bd094f84dfc30b352e61/pyhmmsearch-2025.1.23.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.1.23
2025-09-10T04:43:52,924   Found link https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4
2025-09-10T04:43:52,924   Found link https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4.post1
2025-09-10T04:43:52,925   Found link https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.5
2025-09-10T04:43:52,926 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T04:43:52,926 Getting page https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T04:43:52,928 Found index url https://www.piwheels.org/simple/
2025-09-10T04:43:53,092 Fetched page https://www.piwheels.org/simple/pyhmmsearch/ as text/html
2025-09-10T04:43:53,095   Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.4-py3-none-any.whl#sha256=5490d9457e1bd198733c098879e8e5be680705ac5fae57864c58683bb925f0f3 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,097   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.1.23-py3-none-any.whl#sha256=01541818335acf1bb63aacd9550b2a0693778ebab01c44a5e38a2f5378cb5efb (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,097   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.20-py3-none-any.whl#sha256=1ab100ddcf36d0e7e36089877fbab9b3aba84aac0bd1ba4592558ef552b014ac (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,097   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.18-py3-none-any.whl#sha256=c137db73e490f6c184a8839f86e0d3e656ef246bfdb33e92e20bfe9d3e2065ea (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,098   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.7.29-py3-none-any.whl#sha256=9d6e4f612bc54c2b8544ba0736d3ecd4077ad1903a240d3a3b21f1109023b5be (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,098   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.8-py3-none-any.whl#sha256=2aa87c32caa940ba9258c008b0068c85476ac26751885c44e8e88dd68d9b9a69 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,099   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.7-py3-none-any.whl#sha256=73b2ec6860fddad0f9486a3b2f37c53deec4318fa9e24e8e359c45258faf6749 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,099   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.6-py3-none-any.whl#sha256=879f7399d9f7a37b49e15a398ec51a93dd4a3685b0767a3d86f62fc23f4e5269 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,100   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.4.25-py3-none-any.whl#sha256=a394d806d600287765c3dd15b625b7f3e7b6c6d78c1155da6441060ceb803f6f (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T04:43:53,101 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T04:43:53,101 Skipping link: not a file: https://pypi.org/simple/pyhmmsearch/
2025-09-10T04:43:53,120 Given no hashes to check 1 links for project 'pyhmmsearch': discarding no candidates
2025-09-10T04:43:53,122 Collecting pyhmmsearch==2025.9.4.post1
2025-09-10T04:43:53,124   Created temporary directory: /tmp/pip-unpack-9loqfqzl
2025-09-10T04:43:53,343   Downloading pyhmmsearch-2025.9.4.post1.tar.gz (9.6 kB)
2025-09-10T04:43:53,382   Added pyhmmsearch==2025.9.4.post1 from https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz to build tracker '/tmp/pip-build-tracker-vkyq6m7i'
2025-09-10T04:43:53,384   Running setup.py (path:/tmp/pip-wheel-h6e_wrxt/pyhmmsearch_43ae6573f7734127af71c3e8b5a0f7c2/setup.py) egg_info for package pyhmmsearch
2025-09-10T04:43:53,385   Created temporary directory: /tmp/pip-pip-egg-info-9vwvlmtb
2025-09-10T04:43:53,386   Preparing metadata (setup.py): started
2025-09-10T04:43:53,387   Running command python setup.py egg_info
2025-09-10T04:43:54,277   running egg_info
2025-09-10T04:43:54,305   creating /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info
2025-09-10T04:43:54,306   writing /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/PKG-INFO
2025-09-10T04:43:54,309   writing dependency_links to /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/dependency_links.txt
2025-09-10T04:43:54,311   writing entry points to /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/entry_points.txt
2025-09-10T04:43:54,312   writing requirements to /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/requires.txt
2025-09-10T04:43:54,313   writing top-level names to /tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/top_level.txt
2025-09-10T04:43:54,315   writing manifest file '/tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T04:43:54,400   reading manifest file '/tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T04:43:54,402   reading manifest template 'MANIFEST.in'
2025-09-10T04:43:54,404   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-09-10T04:43:54,405   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-09-10T04:43:54,406   warning: no previously-included files matching '*~' found anywhere in distribution
2025-09-10T04:43:54,406   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-10T04:43:54,407   adding license file 'LICENSE'
2025-09-10T04:43:54,409   writing manifest file '/tmp/pip-pip-egg-info-9vwvlmtb/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T04:43:54,513   Preparing metadata (setup.py): finished with status 'done'
2025-09-10T04:43:54,517   Source in /tmp/pip-wheel-h6e_wrxt/pyhmmsearch_43ae6573f7734127af71c3e8b5a0f7c2 has version 2025.9.4.post1, which satisfies requirement pyhmmsearch==2025.9.4.post1 from https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz
2025-09-10T04:43:54,518   Removed pyhmmsearch==2025.9.4.post1 from https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz from build tracker '/tmp/pip-build-tracker-vkyq6m7i'
2025-09-10T04:43:54,524 Created temporary directory: /tmp/pip-unpack-nu57_f97
2025-09-10T04:43:54,525 Created temporary directory: /tmp/pip-unpack-p4i_0xn7
2025-09-10T04:43:54,526 Building wheels for collected packages: pyhmmsearch
2025-09-10T04:43:54,530   Created temporary directory: /tmp/pip-wheel-pcg9w14_
2025-09-10T04:43:54,531   DEPRECATION: Building 'pyhmmsearch' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyhmmsearch'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-10T04:43:54,533   Building wheel for pyhmmsearch (setup.py): started
2025-09-10T04:43:54,534   Destination directory: /tmp/pip-wheel-pcg9w14_
2025-09-10T04:43:54,535   Running command python setup.py bdist_wheel
2025-09-10T04:43:55,354   running bdist_wheel
2025-09-10T04:43:55,485   running build
2025-09-10T04:43:55,486   running build_py
2025-09-10T04:43:55,516   creating build/lib/pyhmmsearch
2025-09-10T04:43:55,518   copying pyhmmsearch/serialize_hmm_models.py -> build/lib/pyhmmsearch
2025-09-10T04:43:55,521   copying pyhmmsearch/__init__.py -> build/lib/pyhmmsearch
2025-09-10T04:43:55,523   copying pyhmmsearch/reformat_pyhmmsearch.py -> build/lib/pyhmmsearch
2025-09-10T04:43:55,525   copying pyhmmsearch/pyhmmsearch.py -> build/lib/pyhmmsearch
2025-09-10T04:43:55,556   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-10T04:43:55,557   !!

2025-09-10T04:43:55,558           ********************************************************************************
2025-09-10T04:43:55,559           Please avoid running ``setup.py`` directly.
2025-09-10T04:43:55,559           Instead, use pypa/build, pypa/installer or other
2025-09-10T04:43:55,560           standards-based tools.

2025-09-10T04:43:55,561           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-10T04:43:55,562           or your builds will no longer be supported.

2025-09-10T04:43:55,563           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-10T04:43:55,563           ********************************************************************************

2025-09-10T04:43:55,564   !!
2025-09-10T04:43:55,565     self.initialize_options()
2025-09-10T04:43:55,584   installing to build/bdist.linux-armv7l/wheel
2025-09-10T04:43:55,585   running install
2025-09-10T04:43:55,608   running install_lib
2025-09-10T04:43:55,634   creating build/bdist.linux-armv7l/wheel
2025-09-10T04:43:55,637   creating build/bdist.linux-armv7l/wheel/pyhmmsearch
2025-09-10T04:43:55,638   copying build/lib/pyhmmsearch/serialize_hmm_models.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T04:43:55,640   copying build/lib/pyhmmsearch/__init__.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T04:43:55,642   copying build/lib/pyhmmsearch/reformat_pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T04:43:55,644   copying build/lib/pyhmmsearch/pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T04:43:55,646   running install_egg_info
2025-09-10T04:43:55,679   running egg_info
2025-09-10T04:43:55,706   writing pyhmmsearch.egg-info/PKG-INFO
2025-09-10T04:43:55,709   writing dependency_links to pyhmmsearch.egg-info/dependency_links.txt
2025-09-10T04:43:55,710   writing entry points to pyhmmsearch.egg-info/entry_points.txt
2025-09-10T04:43:55,712   writing requirements to pyhmmsearch.egg-info/requires.txt
2025-09-10T04:43:55,713   writing top-level names to pyhmmsearch.egg-info/top_level.txt
2025-09-10T04:43:55,742   reading manifest file 'pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T04:43:55,745   reading manifest template 'MANIFEST.in'
2025-09-10T04:43:55,747   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-09-10T04:43:55,748   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-09-10T04:43:55,748   warning: no previously-included files matching '*~' found anywhere in distribution
2025-09-10T04:43:55,749   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-10T04:43:55,750   adding license file 'LICENSE'
2025-09-10T04:43:55,752   writing manifest file 'pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T04:43:55,753   Copying pyhmmsearch.egg-info to build/bdist.linux-armv7l/wheel/./pyhmmsearch-2025.9.4.post1-py3.11.egg-info
2025-09-10T04:43:55,765   running install_scripts
2025-09-10T04:43:55,778   creating build/bdist.linux-armv7l/wheel/pyhmmsearch-2025.9.4.post1.dist-info/WHEEL
2025-09-10T04:43:55,781   creating '/tmp/pip-wheel-pcg9w14_/pyhmmsearch-2025.9.4.post1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-10T04:43:55,783   adding 'pyhmmsearch/__init__.py'
2025-09-10T04:43:55,785   adding 'pyhmmsearch/pyhmmsearch.py'
2025-09-10T04:43:55,786   adding 'pyhmmsearch/reformat_pyhmmsearch.py'
2025-09-10T04:43:55,788   adding 'pyhmmsearch/serialize_hmm_models.py'
2025-09-10T04:43:55,791   adding 'pyhmmsearch-2025.9.4.post1.dist-info/licenses/LICENSE'
2025-09-10T04:43:55,792   adding 'pyhmmsearch-2025.9.4.post1.dist-info/METADATA'
2025-09-10T04:43:55,793   adding 'pyhmmsearch-2025.9.4.post1.dist-info/WHEEL'
2025-09-10T04:43:55,794   adding 'pyhmmsearch-2025.9.4.post1.dist-info/entry_points.txt'
2025-09-10T04:43:55,795   adding 'pyhmmsearch-2025.9.4.post1.dist-info/top_level.txt'
2025-09-10T04:43:55,796   adding 'pyhmmsearch-2025.9.4.post1.dist-info/RECORD'
2025-09-10T04:43:55,797   removing build/bdist.linux-armv7l/wheel
2025-09-10T04:43:55,908   Building wheel for pyhmmsearch (setup.py): finished with status 'done'
2025-09-10T04:43:55,910   Created wheel for pyhmmsearch: filename=pyhmmsearch-2025.9.4.post1-py3-none-any.whl size=8931 sha256=520479c15472c4a30fca0d210d560ea851789edefc609fe90f55f2d479a1fbd6
2025-09-10T04:43:55,912   Stored in directory: /tmp/pip-ephem-wheel-cache-qb03q7gt/wheels/7b/25/98/0aa755e747b2ab6ac81aa59ce9150b1346a92f3ce8d4ef2c01
2025-09-10T04:43:55,922 Successfully built pyhmmsearch
2025-09-10T04:43:55,926 Removed build tracker: '/tmp/pip-build-tracker-vkyq6m7i'