2025-09-10T06:15:23,081 Created temporary directory: /tmp/pip-build-tracker-290qty0a 2025-09-10T06:15:23,082 Initialized build tracking at /tmp/pip-build-tracker-290qty0a 2025-09-10T06:15:23,082 Created build tracker: /tmp/pip-build-tracker-290qty0a 2025-09-10T06:15:23,082 Entered build tracker: /tmp/pip-build-tracker-290qty0a 2025-09-10T06:15:23,082 Created temporary directory: /tmp/pip-wheel-hjme0u7p 2025-09-10T06:15:23,085 Created temporary directory: /tmp/pip-ephem-wheel-cache-ia4a4601 2025-09-10T06:15:23,144 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T06:15:23,146 2 location(s) to search for versions of peptides: 2025-09-10T06:15:23,146 * https://pypi.org/simple/peptides/ 2025-09-10T06:15:23,146 * https://www.piwheels.org/simple/peptides/ 2025-09-10T06:15:23,147 Fetching project page and analyzing links: https://pypi.org/simple/peptides/ 2025-09-10T06:15:23,147 Getting page https://pypi.org/simple/peptides/ 2025-09-10T06:15:23,148 Found index url https://pypi.org/simple/ 2025-09-10T06:15:23,296 Fetched page https://pypi.org/simple/peptides/ as application/vnd.pypi.simple.v1+json 2025-09-10T06:15:23,303 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/a6/0e/4dd0d71f5fd5ea7809ff2049da23958e941d7f76ae36864daec85124d2d9/peptides-0.1.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,305 Found link https://files.pythonhosted.org/packages/80/df/c741791a1174f6a8ce392b124f20d3387ab7550dd7dd2910bc91dea02043/peptides-0.1.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.1.0 2025-09-10T06:15:23,305 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/cd/31/ddafd8e7f4b55d732f381ea66663b57dc65c78f44ec43aed057ca2c2dc76/peptides-0.2.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,305 Found link https://files.pythonhosted.org/packages/7b/60/de964d499d99c0b9eb5b688a149491bfb51b75c16a5acbe9faedb58fe456/peptides-0.2.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.2.0 2025-09-10T06:15:23,306 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/f4/c8/0c7ca572c0462178fce957b5913abf119419bc5dc8f28ef39109cda3f1e4/peptides-0.2.1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,306 Found link https://files.pythonhosted.org/packages/db/c9/f8043fac66d031b723c257d0c8b10bca56535a9beb9972f07e096c181a27/peptides-0.2.1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.2.1 2025-09-10T06:15:23,306 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/91/63/8226ff18604dce95ff7a3ec749deba12f8555ca46169923577b7fe78c201/peptides-0.3.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,306 Found link https://files.pythonhosted.org/packages/d7/2d/8e6450016e9bbc1f433c054857b22513521f7d1e6a84af66c9a5df7123f6/peptides-0.3.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.0 2025-09-10T06:15:23,307 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/8a/a8/23262e1e39dc4c3624b04bcebb3ba4bb40f818ae32438048167dc7aa0bb6/peptides-0.3.1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,307 Found link https://files.pythonhosted.org/packages/dd/04/f67d53cdd071ea25a13bf0bb9638ca4033b4bbbf8e1e30fe4e7652da12d1/peptides-0.3.1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.1 2025-09-10T06:15:23,307 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/47/fa/3edf188b285dde06e0aea3d8c175e8dd4f7e302a5a39d65fd9195c48363f/peptides-0.3.2-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,308 Found link https://files.pythonhosted.org/packages/3c/0d/cc978e1a9129b235bc0282da0809c388c34f7ee9b3d7a419b90db6f3a224/peptides-0.3.2.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.2 2025-09-10T06:15:23,308 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/e1/03/9abefd8bdadcca5ca1aa1785d9b15c9e8d5f0ad9d78bb81043920501c384/peptides-0.3.3-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,308 Found link https://files.pythonhosted.org/packages/22/73/b8eede2ad2e6cb14db4c07de708091bf3911a4c4bca01a5fb1f2422e2c6f/peptides-0.3.3.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.3 2025-09-10T06:15:23,308 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/82/d6/c9bc4f19cee59eff0e8e8a3a10192f4d2ae44500b78a4d2f58e32a9c2f39/peptides-0.3.3.post1-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,309 Found link https://files.pythonhosted.org/packages/db/6e/11df5f10241d2b7d4b6981a126c35a8ed269f5d5008ec4e04255acd5eea7/peptides-0.3.3.post1.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.3.post1 2025-09-10T06:15:23,309 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/c4/ce/a4526cf3029462cd79ba87220bbd5ad3aba0927321a4d978a0e30f19032f/peptides-0.3.4-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,309 Found link https://files.pythonhosted.org/packages/c2/5a/871e514852764db28796d4b83bf327cfeab1211e400b2cdfa57cc5ee63d6/peptides-0.3.4.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.3.4 2025-09-10T06:15:23,309 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/58/79/f36b3f1c640286d772bbbfedcc67837c59f401095d0eb78825d82ab488a8/peptides-0.4.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,310 Found link https://files.pythonhosted.org/packages/9c/c8/7c84541a01c38016a93eeea110cfdd7ab50c0dfcd42ac89ec63ca0b75f37/peptides-0.4.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.4.0 2025-09-10T06:15:23,310 Skipping link: No binaries permitted for peptides: https://files.pythonhosted.org/packages/df/8a/a8657f7dd2a401718d81b815c6783fe7bdef34bb4b2013be6568bf2b5041/peptides-0.5.0-py3-none-any.whl (from https://pypi.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,310 Found link https://files.pythonhosted.org/packages/ee/db/27818c8a7917bb44c0f91df86ee95d9741502653da1c0fb68e260de8bc18/peptides-0.5.0.tar.gz (from https://pypi.org/simple/peptides/) (requires-python:>=3.6), version: 0.5.0 2025-09-10T06:15:23,311 Fetching project page and analyzing links: https://www.piwheels.org/simple/peptides/ 2025-09-10T06:15:23,311 Getting page https://www.piwheels.org/simple/peptides/ 2025-09-10T06:15:23,312 Found index url https://www.piwheels.org/simple/ 2025-09-10T06:15:23,397 Fetched page https://www.piwheels.org/simple/peptides/ as text/html 2025-09-10T06:15:23,400 Skipping link: No binaries permitted for peptides: https://www.piwheels.org/simple/peptides/peptides-0.5.0-py3-none-any.whl#sha256=f37a5c0f1e1b4667e6f31483dc7252bcfd1b510cd7b87c2bdaf3b5ffbcc1c088 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,400 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.4.0-py3-none-any.whl#sha256=0c9d24313ff40b67305b6e95dab499b7623d963bfbbc5a21afe44405fbd30ef4 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,400 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.4-py3-none-any.whl#sha256=2e92c80cbd3d89cf62d453968167c3ca312c5558c6dd24abcc46e99c39f6e3de (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,400 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.3.post1-py3-none-any.whl#sha256=cd231addd5891755b3f96f8a13e33d6d9836c24eb7161777dedd78fb8021264b (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,400 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.3-py3-none-any.whl#sha256=424e14b396d0e3869b469fc91f4c0205cfb80d5aa8bdb3da1e1d47ee497f2bf7 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,401 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.2-py3-none-any.whl#sha256=ea5c5fd052e7f29442e1f6599b5521e6bc8de30d34ca4e30f5e3fce0b5a1e171 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,401 Skipping link: No binaries permitted for peptides: https://archive1.piwheels.org/simple/peptides/peptides-0.3.1-py3-none-any.whl#sha256=1f1da817bd95d574fe5a400ba6c60855b1604d1d6b03472a501950db468863b5 (from https://www.piwheels.org/simple/peptides/) (requires-python:>=3.6) 2025-09-10T06:15:23,401 Skipping link: not a file: https://www.piwheels.org/simple/peptides/ 2025-09-10T06:15:23,401 Skipping link: not a file: https://pypi.org/simple/peptides/ 2025-09-10T06:15:23,428 Given no hashes to check 1 links for project 'peptides': discarding no candidates 2025-09-10T06:15:23,429 Collecting peptides==0.2.1 2025-09-10T06:15:23,430 Created temporary directory: /tmp/pip-unpack-wqi9ikfw 2025-09-10T06:15:23,644 Downloading peptides-0.2.1.tar.gz (64 kB) 2025-09-10T06:15:23,780 Added peptides==0.2.1 from https://files.pythonhosted.org/packages/db/c9/f8043fac66d031b723c257d0c8b10bca56535a9beb9972f07e096c181a27/peptides-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-290qty0a' 2025-09-10T06:15:23,781 Running setup.py (path:/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py) egg_info for package peptides 2025-09-10T06:15:23,781 Created temporary directory: /tmp/pip-pip-egg-info-3m91sdyp 2025-09-10T06:15:23,781 Preparing metadata (setup.py): started 2025-09-10T06:15:23,782 Running command python setup.py egg_info 2025-09-10T06:15:24,454 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-10T06:15:24,454 !! 2025-09-10T06:15:24,454 ******************************************************************************** 2025-09-10T06:15:24,454 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-10T06:15:24,455 License :: OSI Approved :: MIT License 2025-09-10T06:15:24,455 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-10T06:15:24,455 ******************************************************************************** 2025-09-10T06:15:24,455 !! 2025-09-10T06:15:24,455 self._finalize_license_expression() 2025-09-10T06:15:24,470 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T06:15:24,471 !! 2025-09-10T06:15:24,471 ******************************************************************************** 2025-09-10T06:15:24,471 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T06:15:24,471 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T06:15:24,471 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T06:15:24,471 or your builds will no longer be supported. 2025-09-10T06:15:24,471 ******************************************************************************** 2025-09-10T06:15:24,471 !! 2025-09-10T06:15:24,472 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T06:15:27,783 running egg_info 2025-09-10T06:15:27,862 creating /tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info 2025-09-10T06:15:27,862 writing /tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/PKG-INFO 2025-09-10T06:15:27,863 writing dependency_links to /tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/dependency_links.txt 2025-09-10T06:15:27,864 writing top-level names to /tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/top_level.txt 2025-09-10T06:15:27,864 writing manifest file '/tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/SOURCES.txt' 2025-09-10T06:15:28,016 reading manifest file '/tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/SOURCES.txt' 2025-09-10T06:15:28,017 reading manifest template 'MANIFEST.in' 2025-09-10T06:15:28,017 warning: no files found matching 'pyproject.toml' 2025-09-10T06:15:28,029 warning: no previously-included files found matching 'peptides/tables/__init__.py' 2025-09-10T06:15:28,029 warning: no previously-included files found matching 'peptides/datasets/__init__.py' 2025-09-10T06:15:28,030 no previously-included directories found matching 'tests' 2025-09-10T06:15:28,030 adding license file 'COPYING' 2025-09-10T06:15:28,036 writing manifest file '/tmp/pip-pip-egg-info-3m91sdyp/peptides.egg-info/SOURCES.txt' 2025-09-10T06:15:28,151 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T06:15:28,156 Source in /tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098 has version 0.2.1, which satisfies requirement peptides==0.2.1 from https://files.pythonhosted.org/packages/db/c9/f8043fac66d031b723c257d0c8b10bca56535a9beb9972f07e096c181a27/peptides-0.2.1.tar.gz 2025-09-10T06:15:28,157 Removed peptides==0.2.1 from https://files.pythonhosted.org/packages/db/c9/f8043fac66d031b723c257d0c8b10bca56535a9beb9972f07e096c181a27/peptides-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-290qty0a' 2025-09-10T06:15:28,162 Created temporary directory: /tmp/pip-unpack-5mgc6g43 2025-09-10T06:15:28,162 Created temporary directory: /tmp/pip-unpack-l4vb41jd 2025-09-10T06:15:28,162 Building wheels for collected packages: peptides 2025-09-10T06:15:28,163 Created temporary directory: /tmp/pip-wheel-a4e3txph 2025-09-10T06:15:28,164 DEPRECATION: Building 'peptides' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'peptides'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T06:15:28,165 Building wheel for peptides (setup.py): started 2025-09-10T06:15:28,166 Destination directory: /tmp/pip-wheel-a4e3txph 2025-09-10T06:15:28,166 Running command python setup.py bdist_wheel 2025-09-10T06:15:28,831 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-10T06:15:28,832 !! 2025-09-10T06:15:28,832 ******************************************************************************** 2025-09-10T06:15:28,832 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-10T06:15:28,832 License :: OSI Approved :: MIT License 2025-09-10T06:15:28,832 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-10T06:15:28,832 ******************************************************************************** 2025-09-10T06:15:28,833 !! 2025-09-10T06:15:28,833 self._finalize_license_expression() 2025-09-10T06:15:28,848 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T06:15:28,848 !! 2025-09-10T06:15:28,849 ******************************************************************************** 2025-09-10T06:15:28,849 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T06:15:28,849 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T06:15:28,849 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T06:15:28,849 or your builds will no longer be supported. 2025-09-10T06:15:28,849 ******************************************************************************** 2025-09-10T06:15:28,849 !! 2025-09-10T06:15:28,850 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T06:15:29,743 running bdist_wheel 2025-09-10T06:15:30,109 running build 2025-09-10T06:15:30,110 running build_py 2025-09-10T06:15:30,115 Traceback (most recent call last): 2025-09-10T06:15:30,116 File "/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py", line 16, in 2025-09-10T06:15:30,116 import astor 2025-09-10T06:15:30,116 ModuleNotFoundError: No module named 'astor' 2025-09-10T06:15:30,116 The above exception was the direct cause of the following exception: 2025-09-10T06:15:30,116 Traceback (most recent call last): 2025-09-10T06:15:30,121 File "", line 2, in 2025-09-10T06:15:30,121 exec(compile(''' 2025-09-10T06:15:30,122 ~~~~^^^^^^^^^^^^ 2025-09-10T06:15:30,122 # This is -- a caller that pip uses to run setup.py 2025-09-10T06:15:30,122 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-10T06:15:30,122 ...<32 lines>... 2025-09-10T06:15:30,122 exec(compile(setup_py_code, filename, "exec")) 2025-09-10T06:15:30,122 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-10T06:15:30,122 ''' % ('/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py',), "", "exec")) 2025-09-10T06:15:30,122 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-10T06:15:30,123 File "", line 35, in 2025-09-10T06:15:30,123 File "/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py", line 202, in 2025-09-10T06:15:30,123 setuptools.setup(cmdclass=dict(build_py=build_py, codegen=codegen)) 2025-09-10T06:15:30,123 ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-10T06:15:30,123 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-10T06:15:30,123 return distutils.core.setup(**attrs) 2025-09-10T06:15:30,123 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,123 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-10T06:15:30,123 return run_commands(dist) 2025-09-10T06:15:30,124 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-10T06:15:30,124 dist.run_commands() 2025-09-10T06:15:30,124 ~~~~~~~~~~~~~~~~~^^ 2025-09-10T06:15:30,124 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-10T06:15:30,124 self.run_command(cmd) 2025-09-10T06:15:30,124 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-10T06:15:30,124 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-10T06:15:30,124 super().run_command(command) 2025-09-10T06:15:30,124 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,125 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-10T06:15:30,125 cmd_obj.run() 2025-09-10T06:15:30,125 ~~~~~~~~~~~^^ 2025-09-10T06:15:30,125 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-10T06:15:30,125 self.run_command("build") 2025-09-10T06:15:30,125 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,125 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-10T06:15:30,125 self.distribution.run_command(command) 2025-09-10T06:15:30,126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,126 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-10T06:15:30,126 super().run_command(command) 2025-09-10T06:15:30,126 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,126 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-10T06:15:30,126 cmd_obj.run() 2025-09-10T06:15:30,126 ~~~~~~~~~~~^^ 2025-09-10T06:15:30,126 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-10T06:15:30,126 self.run_command(cmd_name) 2025-09-10T06:15:30,127 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-10T06:15:30,127 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-10T06:15:30,127 self.distribution.run_command(command) 2025-09-10T06:15:30,127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,127 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-10T06:15:30,127 super().run_command(command) 2025-09-10T06:15:30,127 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-10T06:15:30,127 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-10T06:15:30,128 cmd_obj.run() 2025-09-10T06:15:30,128 ~~~~~~~~~~~^^ 2025-09-10T06:15:30,128 File "/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py", line 196, in run 2025-09-10T06:15:30,128 _codegen.run() 2025-09-10T06:15:30,128 ~~~~~~~~~~~~^^ 2025-09-10T06:15:30,128 File "/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py", line 170, in run 2025-09-10T06:15:30,128 raise RuntimeError("`astor` package is required for the `codegen` command") from astor 2025-09-10T06:15:30,128 RuntimeError: `astor` package is required for the `codegen` command 2025-09-10T06:15:30,238 ERROR: python setup.py bdist_wheel exited with 1 2025-09-10T06:15:30,251 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-10T06:15:30,251 exec(compile('"'"''"'"''"'"' 2025-09-10T06:15:30,251 # This is -- a caller that pip uses to run setup.py 2025-09-10T06:15:30,251 # 2025-09-10T06:15:30,251 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-10T06:15:30,251 # import from `distutils.core` to work with newer packaging standards. 2025-09-10T06:15:30,251 # - It provides a clear error message when setuptools is not installed. 2025-09-10T06:15:30,251 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-10T06:15:30,251 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-10T06:15:30,251 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-10T06:15:30,251 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-10T06:15:30,251 import os, sys, tokenize, traceback 2025-09-10T06:15:30,251 2025-09-10T06:15:30,251 try: 2025-09-10T06:15:30,251 import setuptools 2025-09-10T06:15:30,251 except ImportError: 2025-09-10T06:15:30,251 print( 2025-09-10T06:15:30,251 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-10T06:15:30,251 "the build environment with exception:", 2025-09-10T06:15:30,251 file=sys.stderr, 2025-09-10T06:15:30,251 ) 2025-09-10T06:15:30,251 traceback.print_exc() 2025-09-10T06:15:30,251 sys.exit(1) 2025-09-10T06:15:30,251 2025-09-10T06:15:30,251 __file__ = %r 2025-09-10T06:15:30,251 sys.argv[0] = __file__ 2025-09-10T06:15:30,251 2025-09-10T06:15:30,251 if os.path.exists(__file__): 2025-09-10T06:15:30,251 filename = __file__ 2025-09-10T06:15:30,251 with tokenize.open(__file__) as f: 2025-09-10T06:15:30,251 setup_py_code = f.read() 2025-09-10T06:15:30,251 else: 2025-09-10T06:15:30,251 filename = "" 2025-09-10T06:15:30,251 setup_py_code = "from setuptools import setup; setup()" 2025-09-10T06:15:30,251 2025-09-10T06:15:30,251 exec(compile(setup_py_code, filename, "exec")) 2025-09-10T06:15:30,251 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-a4e3txph[/] 2025-09-10T06:15:30,251 [bold magenta]cwd[/]: /tmp/pip-wheel-hjme0u7p/peptides_fafb058e07594cf5ba5a7a5cb7f91098/ 2025-09-10T06:15:30,251 Building wheel for peptides (setup.py): finished with status 'error' 2025-09-10T06:15:30,252 ERROR: Failed building wheel for peptides 2025-09-10T06:15:30,253 Running setup.py clean for peptides 2025-09-10T06:15:30,254 Running command python setup.py clean 2025-09-10T06:15:30,942 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-10T06:15:30,943 !! 2025-09-10T06:15:30,943 ******************************************************************************** 2025-09-10T06:15:30,943 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-10T06:15:30,943 License :: OSI Approved :: MIT License 2025-09-10T06:15:30,943 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-10T06:15:30,943 ******************************************************************************** 2025-09-10T06:15:30,944 !! 2025-09-10T06:15:30,944 self._finalize_license_expression() 2025-09-10T06:15:30,958 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T06:15:30,959 !! 2025-09-10T06:15:30,959 ******************************************************************************** 2025-09-10T06:15:30,959 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T06:15:30,959 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T06:15:30,959 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T06:15:30,959 or your builds will no longer be supported. 2025-09-10T06:15:30,959 ******************************************************************************** 2025-09-10T06:15:30,960 !! 2025-09-10T06:15:30,960 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T06:15:31,959 running clean 2025-09-10T06:15:32,108 'build/lib' does not exist -- can't clean it 2025-09-10T06:15:32,108 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-10T06:15:32,109 'build/scripts-3.13' does not exist -- can't clean it 2025-09-10T06:15:32,223 Failed to build peptides 2025-09-10T06:15:32,223 ERROR: Failed to build one or more wheels 2025-09-10T06:15:32,224 Exception information: 2025-09-10T06:15:32,224 Traceback (most recent call last): 2025-09-10T06:15:32,224 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-10T06:15:32,224 status = _inner_run() 2025-09-10T06:15:32,224 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-10T06:15:32,224 return self.run(options, args) 2025-09-10T06:15:32,224 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-10T06:15:32,224 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-10T06:15:32,224 return func(self, options, args) 2025-09-10T06:15:32,224 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-10T06:15:32,224 raise CommandError("Failed to build one or more wheels") 2025-09-10T06:15:32,224 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-10T06:15:32,229 Removed build tracker: '/tmp/pip-build-tracker-290qty0a'