2025-09-10T06:58:47,017 Created temporary directory: /tmp/pip-build-tracker-unpziwj0 2025-09-10T06:58:47,018 Initialized build tracking at /tmp/pip-build-tracker-unpziwj0 2025-09-10T06:58:47,018 Created build tracker: /tmp/pip-build-tracker-unpziwj0 2025-09-10T06:58:47,019 Entered build tracker: /tmp/pip-build-tracker-unpziwj0 2025-09-10T06:58:47,019 Created temporary directory: /tmp/pip-wheel-pm_eh0ny 2025-09-10T06:58:47,022 Created temporary directory: /tmp/pip-ephem-wheel-cache-ubyi3dlw 2025-09-10T06:58:47,080 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T06:58:47,082 2 location(s) to search for versions of pyvcf3: 2025-09-10T06:58:47,082 * https://pypi.org/simple/pyvcf3/ 2025-09-10T06:58:47,082 * https://www.piwheels.org/simple/pyvcf3/ 2025-09-10T06:58:47,083 Fetching project page and analyzing links: https://pypi.org/simple/pyvcf3/ 2025-09-10T06:58:47,083 Getting page https://pypi.org/simple/pyvcf3/ 2025-09-10T06:58:47,084 Found index url https://pypi.org/simple/ 2025-09-10T06:58:47,234 Fetched page https://pypi.org/simple/pyvcf3/ as application/vnd.pypi.simple.v1+json 2025-09-10T06:58:47,237 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/28/e4/1444bd99ba308b117583dc2424ad29fbc59e3f48b283f34ee0b525f81355/PyVCF3-1.0.0-py3.10-linux-x86_64.egg (from https://pypi.org/simple/pyvcf3/) 2025-09-10T06:58:47,237 Found link https://files.pythonhosted.org/packages/af/3a/d3c816c29dc176177067160069ac049a4bbd3c0feb96a41380b6d0e9d4bf/PyVCF3-1.0.0.tar.gz (from https://pypi.org/simple/pyvcf3/), version: 1.0.0 2025-09-10T06:58:47,238 Found link https://files.pythonhosted.org/packages/9b/f3/79dd49b0c14edb1e6845fcfcbaebc059970466deadfced075037d1862147/PyVCF3-1.0.1.tar.gz (from https://pypi.org/simple/pyvcf3/), version: 1.0.1 2025-09-10T06:58:47,238 Found link https://files.pythonhosted.org/packages/6a/0d/6d79c6ac40df1e24a8dc2df551e2f1bf93bc5defa815750910787a1f1ead/PyVCF3-1.0.2.tar.gz (from https://pypi.org/simple/pyvcf3/), version: 1.0.2 2025-09-10T06:58:47,239 Found link https://files.pythonhosted.org/packages/28/ee/5d0b0bd20762f1126b34cb15dce973fe4dbd1baf17d7ee621b18e336c0e5/PyVCF3-1.0.3.tar.gz (from https://pypi.org/simple/pyvcf3/), version: 1.0.3 2025-09-10T06:58:47,239 Skipping link: No binaries permitted for pyvcf3: https://files.pythonhosted.org/packages/67/52/e4c3d6656b94bddaf41bacffbe3e3e0e4ba1262854dde40e0d884fb2b40b/pyvcf3-1.0.4-py3-none-any.whl (from https://pypi.org/simple/pyvcf3/) 2025-09-10T06:58:47,240 Found link https://files.pythonhosted.org/packages/54/25/11d689a4c8eb8e0fe863310cccb3785ab79746896d342683e493b1308bd8/pyvcf3-1.0.4.tar.gz (from https://pypi.org/simple/pyvcf3/), version: 1.0.4 2025-09-10T06:58:47,241 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyvcf3/ 2025-09-10T06:58:47,241 Getting page https://www.piwheels.org/simple/pyvcf3/ 2025-09-10T06:58:47,243 Found index url https://www.piwheels.org/simple/ 2025-09-10T06:58:47,347 Fetched page https://www.piwheels.org/simple/pyvcf3/ as text/html 2025-09-10T06:58:47,361 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/pyvcf3-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=ee39875519ab622a90403b09c1af29fc8cbf9f58e3f78c97095b5df541683645 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,361 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/pyvcf3-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=ee39875519ab622a90403b09c1af29fc8cbf9f58e3f78c97095b5df541683645 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,362 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp35-cp35m-linux_armv6l.whl#sha256=c2bc58d6ef4d1585e4cf018a09ebb2bbcb970d5e9a7057bd8cf8428f59b7a2a3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,362 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp35-cp35m-linux_armv7l.whl#sha256=c2bc58d6ef4d1585e4cf018a09ebb2bbcb970d5e9a7057bd8cf8428f59b7a2a3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,362 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=2b277f1dd4672377c2f0742abf937ea512150ca34fcd48b232bf12ccbd00351e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,362 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=2b277f1dd4672377c2f0742abf937ea512150ca34fcd48b232bf12ccbd00351e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,363 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=d18221cbaa400e8c4bf62c3b3d48934d3bee2050b19d99ccc11631c8e83e5fd3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,363 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=d18221cbaa400e8c4bf62c3b3d48934d3bee2050b19d99ccc11631c8e83e5fd3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,363 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=0276e152466806c751bdd8a977fc08c25a39e7213d0be00e75e5950058d1da52 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,363 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=0276e152466806c751bdd8a977fc08c25a39e7213d0be00e75e5950058d1da52 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,364 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=b82181179fa7837fd8947bbeed0983199e20de7d0873355849d21e04bff7ee91 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,364 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=b82181179fa7837fd8947bbeed0983199e20de7d0873355849d21e04bff7ee91 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,364 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=14b855223b3226e36ef32d87963a489a07254e6d22b74024ba612b703f671b7e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,364 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=14b855223b3226e36ef32d87963a489a07254e6d22b74024ba612b703f671b7e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,365 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=3a4fb334c31a538e67ad8c658cfab21b34169a5456600073530e5e7302fe6337 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,365 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=3a4fb334c31a538e67ad8c658cfab21b34169a5456600073530e5e7302fe6337 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,365 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp35-cp35m-linux_armv6l.whl#sha256=da4f2b44f5cfe68ddb4d162669bb5364e47cc53c2ced18ebf73636987add62f3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,365 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.2-cp35-cp35m-linux_armv7l.whl#sha256=da4f2b44f5cfe68ddb4d162669bb5364e47cc53c2ced18ebf73636987add62f3 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,366 Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/pyvcf3-1.0.2-cp313-cp313-linux_armv6l.whl#sha256=6ce3fa2f27a4d61e503abb1c203a1e697c28a4950af40bfb15f8a338fb63f6af (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,366 Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/pyvcf3-1.0.2-cp313-cp313-linux_armv7l.whl#sha256=6ce3fa2f27a4d61e503abb1c203a1e697c28a4950af40bfb15f8a338fb63f6af (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,366 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-py3-none-any.whl#sha256=e8bf3e88ac7b88b6eccd3c91b52606b3c182cdaa49ac4d683f5c60817a46cd96 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,366 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp35-cp35m-linux_armv6l.whl#sha256=0883d937a95f4c19a9ada081207e8b991e1234ed0d3fd8f5f0b274ad91020033 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,367 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp35-cp35m-linux_armv7l.whl#sha256=0883d937a95f4c19a9ada081207e8b991e1234ed0d3fd8f5f0b274ad91020033 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,367 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=b5c8fed57dd1f35872b4b6dbf824f7c9795cf7e0345ed0c7fa9014e6fb9b9b9e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,367 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=b5c8fed57dd1f35872b4b6dbf824f7c9795cf7e0345ed0c7fa9014e6fb9b9b9e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,367 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=3308b8a1fa5bd25c337d9f6234df79b445c27005a610251d0d43ee16c417e00e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,368 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=3308b8a1fa5bd25c337d9f6234df79b445c27005a610251d0d43ee16c417e00e (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,368 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=834bc9b76b225a2870d3d35222774265acd67d1ce3822617fc45e84eb8509631 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,368 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=834bc9b76b225a2870d3d35222774265acd67d1ce3822617fc45e84eb8509631 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,368 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=804e89f835d7937364092d5d747f44095a51364a56661627f699c8a406722cfb (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,369 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=804e89f835d7937364092d5d747f44095a51364a56661627f699c8a406722cfb (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,369 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=c288b5b3f724d0924a6d4977216943aee43c7bf5c08cbf71303013c1b55b1cb0 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,369 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=c288b5b3f724d0924a6d4977216943aee43c7bf5c08cbf71303013c1b55b1cb0 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,370 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=197b00635133c0013e911b217a7bb40ea409deab499ca14890971576de63ecfe (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,370 Skipping link: No binaries permitted for pyvcf3: https://archive1.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=197b00635133c0013e911b217a7bb40ea409deab499ca14890971576de63ecfe (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,370 Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/pyvcf3-1.0.0-cp313-cp313-linux_armv6l.whl#sha256=1b51514f52da54d204e61ac906f4065ac3c0a79d5f4e011edc0c55d19185cc81 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,370 Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/pyvcf3-1.0.0-cp313-cp313-linux_armv7l.whl#sha256=1b51514f52da54d204e61ac906f4065ac3c0a79d5f4e011edc0c55d19185cc81 (from https://www.piwheels.org/simple/pyvcf3/) 2025-09-10T06:58:47,371 Skipping link: not a file: https://www.piwheels.org/simple/pyvcf3/ 2025-09-10T06:58:47,371 Skipping link: not a file: https://pypi.org/simple/pyvcf3/ 2025-09-10T06:58:47,393 Given no hashes to check 1 links for project 'pyvcf3': discarding no candidates 2025-09-10T06:58:47,394 Collecting pyvcf3==1.0.3 2025-09-10T06:58:47,395 Created temporary directory: /tmp/pip-unpack-2yjorlht 2025-09-10T06:58:47,561 Downloading PyVCF3-1.0.3.tar.gz (977 kB) 2025-09-10T06:58:47,728 Added pyvcf3==1.0.3 from https://files.pythonhosted.org/packages/28/ee/5d0b0bd20762f1126b34cb15dce973fe4dbd1baf17d7ee621b18e336c0e5/PyVCF3-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-unpziwj0' 2025-09-10T06:58:47,729 Running setup.py (path:/tmp/pip-wheel-pm_eh0ny/pyvcf3_aaa38a491109437b99472970a7108b38/setup.py) egg_info for package pyvcf3 2025-09-10T06:58:47,730 Created temporary directory: /tmp/pip-pip-egg-info-zue7ir2q 2025-09-10T06:58:47,730 Preparing metadata (setup.py): started 2025-09-10T06:58:47,731 Running command python setup.py egg_info 2025-09-10T06:58:48,438 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-10T06:58:48,438 warnings.warn(msg) 2025-09-10T06:58:48,814 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-10T06:58:48,814 !! 2025-09-10T06:58:48,814 ******************************************************************************** 2025-09-10T06:58:48,814 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-10T06:58:48,814 License :: OSI Approved :: BSD License 2025-09-10T06:58:48,814 License :: OSI Approved :: MIT License 2025-09-10T06:58:48,815 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-10T06:58:48,815 ******************************************************************************** 2025-09-10T06:58:48,815 !! 2025-09-10T06:58:48,815 self._finalize_license_expression() 2025-09-10T06:58:48,889 running egg_info 2025-09-10T06:58:48,964 creating /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info 2025-09-10T06:58:48,964 writing /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/PKG-INFO 2025-09-10T06:58:48,965 writing dependency_links to /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/dependency_links.txt 2025-09-10T06:58:48,966 writing entry points to /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/entry_points.txt 2025-09-10T06:58:48,966 writing requirements to /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/requires.txt 2025-09-10T06:58:48,966 writing top-level names to /tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/top_level.txt 2025-09-10T06:58:48,967 writing manifest file '/tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/SOURCES.txt' 2025-09-10T06:58:49,274 reading manifest file '/tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/SOURCES.txt' 2025-09-10T06:58:49,274 reading manifest template 'MANIFEST.in' 2025-09-10T06:58:49,277 adding license file 'LICENSE' 2025-09-10T06:58:49,281 writing manifest file '/tmp/pip-pip-egg-info-zue7ir2q/PyVCF3.egg-info/SOURCES.txt' 2025-09-10T06:58:49,393 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T06:58:49,398 Source in /tmp/pip-wheel-pm_eh0ny/pyvcf3_aaa38a491109437b99472970a7108b38 has version 1.0.3, which satisfies requirement pyvcf3==1.0.3 from https://files.pythonhosted.org/packages/28/ee/5d0b0bd20762f1126b34cb15dce973fe4dbd1baf17d7ee621b18e336c0e5/PyVCF3-1.0.3.tar.gz 2025-09-10T06:58:49,398 Removed pyvcf3==1.0.3 from https://files.pythonhosted.org/packages/28/ee/5d0b0bd20762f1126b34cb15dce973fe4dbd1baf17d7ee621b18e336c0e5/PyVCF3-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-unpziwj0' 2025-09-10T06:58:49,401 Created temporary directory: /tmp/pip-unpack-xr7qnk69 2025-09-10T06:58:49,402 Created temporary directory: /tmp/pip-unpack-jp766s1c 2025-09-10T06:58:49,402 Building wheels for collected packages: pyvcf3 2025-09-10T06:58:49,403 Created temporary directory: /tmp/pip-wheel-3n5mru25 2025-09-10T06:58:49,404 DEPRECATION: Building 'pyvcf3' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyvcf3'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T06:58:49,405 Building wheel for pyvcf3 (setup.py): started 2025-09-10T06:58:49,405 Destination directory: /tmp/pip-wheel-3n5mru25 2025-09-10T06:58:49,405 Running command python setup.py bdist_wheel 2025-09-10T06:58:50,104 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-10T06:58:50,105 warnings.warn(msg) 2025-09-10T06:58:50,474 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-10T06:58:50,475 !! 2025-09-10T06:58:50,475 ******************************************************************************** 2025-09-10T06:58:50,475 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-10T06:58:50,475 License :: OSI Approved :: BSD License 2025-09-10T06:58:50,475 License :: OSI Approved :: MIT License 2025-09-10T06:58:50,475 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-10T06:58:50,475 ******************************************************************************** 2025-09-10T06:58:50,476 !! 2025-09-10T06:58:50,476 self._finalize_license_expression() 2025-09-10T06:58:50,476 running bdist_wheel 2025-09-10T06:58:50,764 running build 2025-09-10T06:58:50,764 running build_py 2025-09-10T06:58:50,840 creating build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,841 copying vcf/utils.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,841 copying vcf/sample_filter.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,842 copying vcf/parser.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,842 copying vcf/model.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,843 copying vcf/filters.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,843 copying vcf/bgzf.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,844 copying vcf/__init__.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:50,845 creating build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:50,845 copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:50,846 copying vcf/test/prof.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:50,847 copying vcf/test/__init__.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:50,847 running egg_info 2025-09-10T06:58:50,917 writing PyVCF3.egg-info/PKG-INFO 2025-09-10T06:58:50,919 writing dependency_links to PyVCF3.egg-info/dependency_links.txt 2025-09-10T06:58:50,919 writing entry points to PyVCF3.egg-info/entry_points.txt 2025-09-10T06:58:50,920 writing requirements to PyVCF3.egg-info/requires.txt 2025-09-10T06:58:50,920 writing top-level names to PyVCF3.egg-info/top_level.txt 2025-09-10T06:58:51,001 reading manifest file 'PyVCF3.egg-info/SOURCES.txt' 2025-09-10T06:58:51,005 reading manifest template 'MANIFEST.in' 2025-09-10T06:58:51,008 adding license file 'LICENSE' 2025-09-10T06:58:51,012 writing manifest file 'PyVCF3.egg-info/SOURCES.txt' 2025-09-10T06:58:51,017 copying vcf/cparse.pyx -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:51,017 copying vcf/test/1kg.sites.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,018 copying vcf/test/1kg.vcf.gz -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,022 copying vcf/test/FT.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,022 copying vcf/test/bad-info-character.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,023 copying vcf/test/bcftools.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,024 copying vcf/test/contig_idonly.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,024 copying vcf/test/example-4.0.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,025 copying vcf/test/example-4.1-bnd.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,025 copying vcf/test/example-4.1-info-multiple-values.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,026 copying vcf/test/example-4.1-ploidy.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,026 copying vcf/test/example-4.1-sv.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,027 copying vcf/test/example-4.1.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,027 copying vcf/test/example-4.2.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,028 copying vcf/test/freebayes.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,029 copying vcf/test/gatk.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,029 copying vcf/test/gatk_26_meta.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,030 copying vcf/test/gonl.chr20.release4.gtc.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,031 copying vcf/test/info-type-character.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,031 copying vcf/test/issue-140-file1.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,032 copying vcf/test/issue-140-file2.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,032 copying vcf/test/issue-140-file3.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,033 copying vcf/test/issue-16.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,033 copying vcf/test/issue-201.vcf.gz -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,034 copying vcf/test/issue-201.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,034 copying vcf/test/issue-214.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,035 copying vcf/test/issue-254.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,035 copying vcf/test/issue_49.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,036 copying vcf/test/metadata-whitespace.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,036 copying vcf/test/mixed-filtering.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,037 copying vcf/test/null_genotype_mono.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,037 copying vcf/test/parse-meta-line.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,038 copying vcf/test/samples-space.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,038 copying vcf/test/samtools.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,039 copying vcf/test/strelka.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,040 copying vcf/test/string_as_flag.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,040 copying vcf/test/tb.vcf.gz -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,041 copying vcf/test/tb.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,041 copying vcf/test/uncalled_genotypes.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,042 copying vcf/test/walk_left.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,042 copying vcf/test/walk_refcall.vcf -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-10T06:58:51,043 running build_ext 2025-09-10T06:58:51,399 Compiling vcf/cparse.pyx because it changed. 2025-09-10T06:58:51,399 [1/1] Cythonizing vcf/cparse.pyx 2025-09-10T06:58:52,636 building 'vcf.cparse' extension 2025-09-10T06:58:52,637 creating build/temp.linux-armv7l-cpython-313/vcf 2025-09-10T06:58:52,637 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-armv7l-cpython-313/vcf/cparse.o 2025-09-10T06:59:07,258 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/vcf/cparse.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/vcf/cparse.cpython-313-arm-linux-gnueabihf.so 2025-09-10T06:59:07,385 running build_scripts 2025-09-10T06:59:07,386 creating build/scripts-3.13 2025-09-10T06:59:07,386 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 2025-09-10T06:59:07,387 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 2025-09-10T06:59:07,387 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 2025-09-10T06:59:07,388 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 2025-09-10T06:59:07,388 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 2025-09-10T06:59:07,388 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 2025-09-10T06:59:07,531 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T06:59:07,531 !! 2025-09-10T06:59:07,532 ******************************************************************************** 2025-09-10T06:59:07,532 Please avoid running ``setup.py`` directly. 2025-09-10T06:59:07,532 Instead, use pypa/build, pypa/installer or other 2025-09-10T06:59:07,532 standards-based tools. 2025-09-10T06:59:07,532 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T06:59:07,532 or your builds will no longer be supported. 2025-09-10T06:59:07,532 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T06:59:07,533 ******************************************************************************** 2025-09-10T06:59:07,533 !! 2025-09-10T06:59:07,533 self.initialize_options() 2025-09-10T06:59:07,607 installing to build/bdist.linux-armv7l/wheel 2025-09-10T06:59:07,607 running install 2025-09-10T06:59:07,631 running install_lib 2025-09-10T06:59:07,704 creating build/bdist.linux-armv7l/wheel 2025-09-10T06:59:07,704 creating build/bdist.linux-armv7l/wheel/vcf 2025-09-10T06:59:07,704 copying build/lib.linux-armv7l-cpython-313/vcf/cparse.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,707 copying build/lib.linux-armv7l-cpython-313/vcf/cparse.pyx -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,708 creating build/bdist.linux-armv7l/wheel/vcf/test 2025-09-10T06:59:07,708 copying build/lib.linux-armv7l-cpython-313/vcf/test/walk_refcall.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,709 copying build/lib.linux-armv7l-cpython-313/vcf/test/walk_left.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,709 copying build/lib.linux-armv7l-cpython-313/vcf/test/uncalled_genotypes.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,709 copying build/lib.linux-armv7l-cpython-313/vcf/test/tb.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,710 copying build/lib.linux-armv7l-cpython-313/vcf/test/tb.vcf.gz -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,710 copying build/lib.linux-armv7l-cpython-313/vcf/test/string_as_flag.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,711 copying build/lib.linux-armv7l-cpython-313/vcf/test/strelka.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,711 copying build/lib.linux-armv7l-cpython-313/vcf/test/samtools.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,711 copying build/lib.linux-armv7l-cpython-313/vcf/test/samples-space.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,712 copying build/lib.linux-armv7l-cpython-313/vcf/test/parse-meta-line.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,712 copying build/lib.linux-armv7l-cpython-313/vcf/test/null_genotype_mono.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,712 copying build/lib.linux-armv7l-cpython-313/vcf/test/mixed-filtering.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,713 copying build/lib.linux-armv7l-cpython-313/vcf/test/metadata-whitespace.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,713 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue_49.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,714 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-254.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,714 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-214.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,714 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-201.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,715 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-201.vcf.gz -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,715 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-16.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,715 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-140-file3.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,716 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-140-file2.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,716 copying build/lib.linux-armv7l-cpython-313/vcf/test/issue-140-file1.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,716 copying build/lib.linux-armv7l-cpython-313/vcf/test/info-type-character.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,717 copying build/lib.linux-armv7l-cpython-313/vcf/test/gonl.chr20.release4.gtc.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,717 copying build/lib.linux-armv7l-cpython-313/vcf/test/gatk_26_meta.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,718 copying build/lib.linux-armv7l-cpython-313/vcf/test/gatk.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,718 copying build/lib.linux-armv7l-cpython-313/vcf/test/freebayes.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,719 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.2.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,719 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.1.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,720 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.1-sv.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,720 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.1-ploidy.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,720 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.1-info-multiple-values.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,721 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.1-bnd.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,721 copying build/lib.linux-armv7l-cpython-313/vcf/test/example-4.0.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,722 copying build/lib.linux-armv7l-cpython-313/vcf/test/contig_idonly.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,722 copying build/lib.linux-armv7l-cpython-313/vcf/test/bcftools.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,723 copying build/lib.linux-armv7l-cpython-313/vcf/test/bad-info-character.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,723 copying build/lib.linux-armv7l-cpython-313/vcf/test/FT.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,723 copying build/lib.linux-armv7l-cpython-313/vcf/test/1kg.vcf.gz -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,727 copying build/lib.linux-armv7l-cpython-313/vcf/test/1kg.sites.vcf -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,727 copying build/lib.linux-armv7l-cpython-313/vcf/test/__init__.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,728 copying build/lib.linux-armv7l-cpython-313/vcf/test/prof.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,728 copying build/lib.linux-armv7l-cpython-313/vcf/test/test_vcf.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-10T06:59:07,729 copying build/lib.linux-armv7l-cpython-313/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,729 copying build/lib.linux-armv7l-cpython-313/vcf/bgzf.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,729 copying build/lib.linux-armv7l-cpython-313/vcf/filters.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,730 copying build/lib.linux-armv7l-cpython-313/vcf/model.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,730 copying build/lib.linux-armv7l-cpython-313/vcf/parser.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,731 copying build/lib.linux-armv7l-cpython-313/vcf/sample_filter.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,731 copying build/lib.linux-armv7l-cpython-313/vcf/utils.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-10T06:59:07,732 running install_egg_info 2025-09-10T06:59:07,809 Copying PyVCF3.egg-info to build/bdist.linux-armv7l/wheel/./PyVCF3-1.0.3-py3.13.egg-info 2025-09-10T06:59:07,811 running install_scripts 2025-09-10T06:59:07,812 creating build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts 2025-09-10T06:59:07,812 copying build/scripts-3.13/vcf_sample_filter.py -> build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts 2025-09-10T06:59:07,813 copying build/scripts-3.13/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts 2025-09-10T06:59:07,813 copying build/scripts-3.13/vcf_melt -> build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts 2025-09-10T06:59:07,813 changing mode of build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts/vcf_sample_filter.py to 755 2025-09-10T06:59:07,813 changing mode of build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts/vcf_filter.py to 755 2025-09-10T06:59:07,814 changing mode of build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.data/scripts/vcf_melt to 755 2025-09-10T06:59:07,863 creating build/bdist.linux-armv7l/wheel/pyvcf3-1.0.3.dist-info/WHEEL 2025-09-10T06:59:07,864 creating '/tmp/pip-wheel-3n5mru25/pyvcf3-1.0.3-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T06:59:07,866 adding 'pyvcf3-1.0.3.data/scripts/vcf_filter.py' 2025-09-10T06:59:07,867 adding 'pyvcf3-1.0.3.data/scripts/vcf_melt' 2025-09-10T06:59:07,867 adding 'pyvcf3-1.0.3.data/scripts/vcf_sample_filter.py' 2025-09-10T06:59:07,868 adding 'pyvcf3-1.0.3.dist-info/licenses/LICENSE' 2025-09-10T06:59:07,869 adding 'vcf/__init__.py' 2025-09-10T06:59:07,873 adding 'vcf/bgzf.py' 2025-09-10T06:59:08,020 adding 'vcf/cparse.cpython-313-arm-linux-gnueabihf.so' 2025-09-10T06:59:08,025 adding 'vcf/cparse.pyx' 2025-09-10T06:59:08,026 adding 'vcf/filters.py' 2025-09-10T06:59:08,029 adding 'vcf/model.py' 2025-09-10T06:59:08,032 adding 'vcf/parser.py' 2025-09-10T06:59:08,033 adding 'vcf/sample_filter.py' 2025-09-10T06:59:08,034 adding 'vcf/utils.py' 2025-09-10T06:59:08,038 adding 'vcf/test/1kg.sites.vcf' 2025-09-10T06:59:08,133 adding 'vcf/test/1kg.vcf.gz' 2025-09-10T06:59:08,140 adding 'vcf/test/FT.vcf' 2025-09-10T06:59:08,141 adding 'vcf/test/__init__.py' 2025-09-10T06:59:08,141 adding 'vcf/test/bad-info-character.vcf' 2025-09-10T06:59:08,148 adding 'vcf/test/bcftools.vcf' 2025-09-10T06:59:08,149 adding 'vcf/test/contig_idonly.vcf' 2025-09-10T06:59:08,149 adding 'vcf/test/example-4.0.vcf' 2025-09-10T06:59:08,150 adding 'vcf/test/example-4.1-bnd.vcf' 2025-09-10T06:59:08,151 adding 'vcf/test/example-4.1-info-multiple-values.vcf' 2025-09-10T06:59:08,151 adding 'vcf/test/example-4.1-ploidy.vcf' 2025-09-10T06:59:08,152 adding 'vcf/test/example-4.1-sv.vcf' 2025-09-10T06:59:08,153 adding 'vcf/test/example-4.1.vcf' 2025-09-10T06:59:08,156 adding 'vcf/test/example-4.2.vcf' 2025-09-10T06:59:08,170 adding 'vcf/test/freebayes.vcf' 2025-09-10T06:59:08,173 adding 'vcf/test/gatk.vcf' 2025-09-10T06:59:08,174 adding 'vcf/test/gatk_26_meta.vcf' 2025-09-10T06:59:08,176 adding 'vcf/test/gonl.chr20.release4.gtc.vcf' 2025-09-10T06:59:08,176 adding 'vcf/test/info-type-character.vcf' 2025-09-10T06:59:08,177 adding 'vcf/test/issue-140-file1.vcf' 2025-09-10T06:59:08,178 adding 'vcf/test/issue-140-file2.vcf' 2025-09-10T06:59:08,179 adding 'vcf/test/issue-140-file3.vcf' 2025-09-10T06:59:08,179 adding 'vcf/test/issue-16.vcf' 2025-09-10T06:59:08,180 adding 'vcf/test/issue-201.vcf.gz' 2025-09-10T06:59:08,181 adding 'vcf/test/issue-201.vcf.gz.tbi' 2025-09-10T06:59:08,182 adding 'vcf/test/issue-214.vcf' 2025-09-10T06:59:08,182 adding 'vcf/test/issue-254.vcf' 2025-09-10T06:59:08,183 adding 'vcf/test/issue_49.vcf' 2025-09-10T06:59:08,186 adding 'vcf/test/metadata-whitespace.vcf' 2025-09-10T06:59:08,187 adding 'vcf/test/mixed-filtering.vcf' 2025-09-10T06:59:08,188 adding 'vcf/test/null_genotype_mono.vcf' 2025-09-10T06:59:08,189 adding 'vcf/test/parse-meta-line.vcf' 2025-09-10T06:59:08,189 adding 'vcf/test/prof.py' 2025-09-10T06:59:08,190 adding 'vcf/test/samples-space.vcf' 2025-09-10T06:59:08,191 adding 'vcf/test/samtools.vcf' 2025-09-10T06:59:08,192 adding 'vcf/test/strelka.vcf' 2025-09-10T06:59:08,192 adding 'vcf/test/string_as_flag.vcf' 2025-09-10T06:59:08,193 adding 'vcf/test/tb.vcf.gz' 2025-09-10T06:59:08,194 adding 'vcf/test/tb.vcf.gz.tbi' 2025-09-10T06:59:08,198 adding 'vcf/test/test_vcf.py' 2025-09-10T06:59:08,199 adding 'vcf/test/uncalled_genotypes.vcf' 2025-09-10T06:59:08,200 adding 'vcf/test/walk_left.vcf' 2025-09-10T06:59:08,200 adding 'vcf/test/walk_refcall.vcf' 2025-09-10T06:59:08,201 adding 'pyvcf3-1.0.3.dist-info/METADATA' 2025-09-10T06:59:08,201 adding 'pyvcf3-1.0.3.dist-info/WHEEL' 2025-09-10T06:59:08,202 adding 'pyvcf3-1.0.3.dist-info/entry_points.txt' 2025-09-10T06:59:08,202 adding 'pyvcf3-1.0.3.dist-info/top_level.txt' 2025-09-10T06:59:08,204 adding 'pyvcf3-1.0.3.dist-info/RECORD' 2025-09-10T06:59:08,204 removing build/bdist.linux-armv7l/wheel 2025-09-10T06:59:08,472 Building wheel for pyvcf3 (setup.py): finished with status 'done' 2025-09-10T06:59:08,486 Created wheel for pyvcf3: filename=pyvcf3-1.0.3-cp313-cp313-linux_armv7l.whl size=1270649 sha256=0076758f23c67c8fd56ed8fbaffe34cb0ef84df12a22081d08d045f05d54ab8e 2025-09-10T06:59:08,487 Stored in directory: /tmp/pip-ephem-wheel-cache-ubyi3dlw/wheels/03/ff/50/8874f6d55b295777eac9060d684a8bc70229a022028e56cd0f 2025-09-10T06:59:08,496 Successfully built pyvcf3 2025-09-10T06:59:08,500 Removed build tracker: '/tmp/pip-build-tracker-unpziwj0'