2025-09-10T08:15:26,430 Created temporary directory: /tmp/pip-build-tracker-_ckk5xrs 2025-09-10T08:15:26,431 Initialized build tracking at /tmp/pip-build-tracker-_ckk5xrs 2025-09-10T08:15:26,431 Created build tracker: /tmp/pip-build-tracker-_ckk5xrs 2025-09-10T08:15:26,431 Entered build tracker: /tmp/pip-build-tracker-_ckk5xrs 2025-09-10T08:15:26,432 Created temporary directory: /tmp/pip-wheel-9i8nv5ar 2025-09-10T08:15:26,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-ddu3rsl_ 2025-09-10T08:15:26,494 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T08:15:26,496 2 location(s) to search for versions of hic-straw: 2025-09-10T08:15:26,496 * https://pypi.org/simple/hic-straw/ 2025-09-10T08:15:26,496 * https://www.piwheels.org/simple/hic-straw/ 2025-09-10T08:15:26,496 Fetching project page and analyzing links: https://pypi.org/simple/hic-straw/ 2025-09-10T08:15:26,497 Getting page https://pypi.org/simple/hic-straw/ 2025-09-10T08:15:26,498 Found index url https://pypi.org/simple/ 2025-09-10T08:15:26,567 Fetched page https://pypi.org/simple/hic-straw/ as application/vnd.pypi.simple.v1+json 2025-09-10T08:15:26,570 Found link https://files.pythonhosted.org/packages/58/12/da9e47221a82011797d19832a2dbc8843b0a96c483874f17010b4921c993/hic-straw-0.0.6.tar.gz (from https://pypi.org/simple/hic-straw/), version: 0.0.6 2025-09-10T08:15:26,570 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/a4/89/1fc2a4e6d9b5379ac4ea0add62658d519095d22a8fef6feb32d1f6d04341/hic_straw-0.0.6-py3-none-any.whl (from https://pypi.org/simple/hic-straw/) 2025-09-10T08:15:26,571 Found link https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.0 2025-09-10T08:15:26,571 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/f4/64/b77b8acee62ce4088fde83fea0b45b61ac273f676453fc551a1e2402f1df/hic_straw-1.0.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,571 Found link https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.1 2025-09-10T08:15:26,572 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/0f/27/74d140215ca8b246971566707e35c6865dd2076d59a1dcba4b21d20aed7f/hic_straw-1.0.0.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,572 Found link https://files.pythonhosted.org/packages/4e/98/5e25a075010114b063044296dcca74be78b27c94deb282b661c2c55f667e/hic-straw-1.1.0.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.1.0 2025-09-10T08:15:26,572 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/ed/b6/9dd021f8ae8744255035c5eddcd68478db957480d3674ceb00abe95bc28d/hic_straw-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,572 Found link https://files.pythonhosted.org/packages/10/91/7678a69e8b1b3ff5a0aa603d3d81794a095db4aeb089574acc0ec78e768a/hic-straw-1.1.2.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.1.2 2025-09-10T08:15:26,572 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/06/95/4601e73dfae01c423e39139874f8ac02a767d75b7e9dfb271d8e53abaa78/hic_straw-1.1.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,572 Found link https://files.pythonhosted.org/packages/a3/f1/19bb1d40f659e5daa98ba6a2d845c1203ec45661c1b855958643ccc37c66/hic-straw-1.1.3.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.1.3 2025-09-10T08:15:26,573 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/75/c1/65991d0759ac4631dfd929121d30889d79b9937ada5197a0e77dcf4d5b4c/hic_straw-1.1.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,573 Found link https://files.pythonhosted.org/packages/90/c0/c8eb0d0ff42bc42a3d0858773bfe498eee073c873035440150c78b291b02/hic-straw-1.2.0.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.2.0 2025-09-10T08:15:26,573 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/aa/9c/28b4a0dca05ef063fc28842e3dda8c5bbb6b048921f29e2462b7202324aa/hic_straw-1.2.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,573 Found link https://files.pythonhosted.org/packages/c5/59/79ef668fcb7ad3815ff1afd767c9421300ac4705f8f37d276a4053b97bbc/hic-straw-1.2.1.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.2.1 2025-09-10T08:15:26,573 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/58/cf/b8be42b2c62d6296eb8951ac8867468dd4c516eca9b0fa62b0efe31ac4a9/hic_straw-1.2.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,574 Found link https://files.pythonhosted.org/packages/88/5d/e3ee3ae11156bae3729bba14c0670dc0e309653010d9280ae7fce980f4a5/hic-straw-1.3.0.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.3.0 2025-09-10T08:15:26,574 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/69/32/41853a2ade089836f3049c828058a9cb66980f7bfa7d990d1b9790bdf64b/hic_straw-1.3.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,574 Found link https://files.pythonhosted.org/packages/8e/ec/431c76970f8973ea5937a9b5f2d1689a641b3fe6475246a32451274fa2dd/hic-straw-1.3.1.tar.gz (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.3.1 2025-09-10T08:15:26,574 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/09/90/fa240ee10625db3d81901a1ce60f5302d43c81422db901d0f9931902d7d4/hic_straw-1.3.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,574 Fetching project page and analyzing links: https://www.piwheels.org/simple/hic-straw/ 2025-09-10T08:15:26,575 Getting page https://www.piwheels.org/simple/hic-straw/ 2025-09-10T08:15:26,576 Found index url https://www.piwheels.org/simple/ 2025-09-10T08:15:26,673 Fetched page https://www.piwheels.org/simple/hic-straw/ as text/html 2025-09-10T08:15:26,690 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp35-cp35m-linux_armv6l.whl#sha256=df13fa64d86a3f34d39f47d024145d2d52fe028bfd0ffe67d7dac97911b4508b (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,690 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp35-cp35m-linux_armv7l.whl#sha256=df13fa64d86a3f34d39f47d024145d2d52fe028bfd0ffe67d7dac97911b4508b (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,690 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp37-cp37m-linux_armv6l.whl#sha256=de78ccc4e40d042078c2bd084948fb806bc8ff9274bedf5baedee013ceac97e0 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,690 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp37-cp37m-linux_armv7l.whl#sha256=de78ccc4e40d042078c2bd084948fb806bc8ff9274bedf5baedee013ceac97e0 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,690 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp39-cp39-linux_armv6l.whl#sha256=15b954af8aed9705e991d4e51a2cacf7e65a4702fd4bb09c41205fec7ef6a26c (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp39-cp39-linux_armv7l.whl#sha256=15b954af8aed9705e991d4e51a2cacf7e65a4702fd4bb09c41205fec7ef6a26c (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp311-cp311-linux_armv6l.whl#sha256=5a17e420ecf338de1dbee854895d5f764a4cfd3cecb045cd0579565044828514 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.1-cp311-cp311-linux_armv7l.whl#sha256=5a17e420ecf338de1dbee854895d5f764a4cfd3cecb045cd0579565044828514 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp35-cp35m-linux_armv6l.whl#sha256=152dff3c09781f277d13095abd00d0447dbd94f19945778df8bd5719b9840d22 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp35-cp35m-linux_armv7l.whl#sha256=152dff3c09781f277d13095abd00d0447dbd94f19945778df8bd5719b9840d22 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=ca0c0edbe75c3caed5b5925f077f7789e924e057ba74039318575c6c21cbce07 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=ca0c0edbe75c3caed5b5925f077f7789e924e057ba74039318575c6c21cbce07 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,691 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=2a8a3fb3af81b6cf1f3bbc9a71fdf7d4765d313851b29fdcc0bb5bfe62efe9b4 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=2a8a3fb3af81b6cf1f3bbc9a71fdf7d4765d313851b29fdcc0bb5bfe62efe9b4 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp311-cp311-linux_armv6l.whl#sha256=7db6fcb72462e78c342fb319ec35c66ce7f5bab0817ea9cfa0bee8d8da65023d (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.3.0-cp311-cp311-linux_armv7l.whl#sha256=7db6fcb72462e78c342fb319ec35c66ce7f5bab0817ea9cfa0bee8d8da65023d (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=39f533f627b292a1dd1790ef951418bf80feb7cb19dc3d915eea04fabf2e2102 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=39f533f627b292a1dd1790ef951418bf80feb7cb19dc3d915eea04fabf2e2102 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=0aa787f65d29deea4a8c6030d66d04136b8c9f3cf0aba72fef3654396293736a (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=0aa787f65d29deea4a8c6030d66d04136b8c9f3cf0aba72fef3654396293736a (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp39-cp39-linux_armv6l.whl#sha256=b274d66f1ff272331ace048c42cf474d408194f2849ba2d6c6dfb86d601faada (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,692 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp39-cp39-linux_armv7l.whl#sha256=b274d66f1ff272331ace048c42cf474d408194f2849ba2d6c6dfb86d601faada (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=a3546918dd047f25475631af9ff26dd18cf25c13661faecb394538083d5533da (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=a3546918dd047f25475631af9ff26dd18cf25c13661faecb394538083d5533da (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp35-cp35m-linux_armv6l.whl#sha256=d3e5e74b6e51394bc13a534a5d82d6c040ded74788a655e9f51b5f861a51002e (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp35-cp35m-linux_armv7l.whl#sha256=d3e5e74b6e51394bc13a534a5d82d6c040ded74788a655e9f51b5f861a51002e (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=8d63b43aebdfe87c4d283495b5534f746c4b2cd74fa9435a336d4efe1ce8e2b3 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=8d63b43aebdfe87c4d283495b5534f746c4b2cd74fa9435a336d4efe1ce8e2b3 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,693 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=f2d4728c16e640bbdedca2cc0357f68fb5d3004adb6bf9d55ea74303666dd117 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,694 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=f2d4728c16e640bbdedca2cc0357f68fb5d3004adb6bf9d55ea74303666dd117 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,694 Skipping link: No binaries permitted for hic-straw: 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https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv6l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv7l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp313-cp313-linux_armv6l.whl#sha256=66dd8885aba618c79128089c515c37fb34921b96c0322ca1ba49549956a80d12 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp313-cp313-linux_armv7l.whl#sha256=66dd8885aba618c79128089c515c37fb34921b96c0322ca1ba49549956a80d12 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2025-09-10T08:15:26,701 Skipping link: No binaries permitted for hic-straw: https://archive1.piwheels.org/simple/hic-straw/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://www.piwheels.org/simple/hic-straw/) 2025-09-10T08:15:26,702 Skipping link: not a file: https://www.piwheels.org/simple/hic-straw/ 2025-09-10T08:15:26,702 Skipping link: not a file: https://pypi.org/simple/hic-straw/ 2025-09-10T08:15:26,726 Given no hashes to check 1 links for project 'hic-straw': discarding no candidates 2025-09-10T08:15:26,727 Collecting hic-straw==1.2.1 2025-09-10T08:15:26,728 Created temporary directory: /tmp/pip-unpack-9m8fs68g 2025-09-10T08:15:26,872 Downloading hic-straw-1.2.1.tar.gz (17 kB) 2025-09-10T08:15:26,901 Added hic-straw==1.2.1 from https://files.pythonhosted.org/packages/c5/59/79ef668fcb7ad3815ff1afd767c9421300ac4705f8f37d276a4053b97bbc/hic-straw-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-_ckk5xrs' 2025-09-10T08:15:26,902 Running setup.py (path:/tmp/pip-wheel-9i8nv5ar/hic-straw_c8dfe1442a0644d58b2d27b1dcde2455/setup.py) egg_info for package hic-straw 2025-09-10T08:15:26,902 Created temporary directory: /tmp/pip-pip-egg-info-rd02brzo 2025-09-10T08:15:26,902 Preparing metadata (setup.py): started 2025-09-10T08:15:26,903 Running command python setup.py egg_info 2025-09-10T08:15:27,730 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T08:15:27,730 !! 2025-09-10T08:15:27,730 ******************************************************************************** 2025-09-10T08:15:27,730 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T08:15:27,730 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T08:15:27,731 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:15:27,731 or your builds will no longer be supported. 2025-09-10T08:15:27,731 ******************************************************************************** 2025-09-10T08:15:27,731 !! 2025-09-10T08:15:27,731 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T08:15:30,771 running egg_info 2025-09-10T08:15:30,849 creating /tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info 2025-09-10T08:15:30,849 writing /tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/PKG-INFO 2025-09-10T08:15:30,850 writing dependency_links to /tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/dependency_links.txt 2025-09-10T08:15:30,851 writing requirements to /tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/requires.txt 2025-09-10T08:15:30,851 writing top-level names to /tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/top_level.txt 2025-09-10T08:15:30,851 writing manifest file '/tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/SOURCES.txt' 2025-09-10T08:15:31,007 reading manifest file '/tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/SOURCES.txt' 2025-09-10T08:15:31,008 reading manifest template 'MANIFEST.in' 2025-09-10T08:15:31,011 writing manifest file '/tmp/pip-pip-egg-info-rd02brzo/hic_straw.egg-info/SOURCES.txt' 2025-09-10T08:15:31,125 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T08:15:31,129 Source in /tmp/pip-wheel-9i8nv5ar/hic-straw_c8dfe1442a0644d58b2d27b1dcde2455 has version 1.2.1, which satisfies requirement hic-straw==1.2.1 from https://files.pythonhosted.org/packages/c5/59/79ef668fcb7ad3815ff1afd767c9421300ac4705f8f37d276a4053b97bbc/hic-straw-1.2.1.tar.gz 2025-09-10T08:15:31,130 Removed hic-straw==1.2.1 from https://files.pythonhosted.org/packages/c5/59/79ef668fcb7ad3815ff1afd767c9421300ac4705f8f37d276a4053b97bbc/hic-straw-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-_ckk5xrs' 2025-09-10T08:15:31,134 Created temporary directory: /tmp/pip-unpack-w9f716mg 2025-09-10T08:15:31,135 Created temporary directory: /tmp/pip-unpack-onhahn7s 2025-09-10T08:15:31,135 Building wheels for collected packages: hic-straw 2025-09-10T08:15:31,136 Created temporary directory: /tmp/pip-wheel-1270cxle 2025-09-10T08:15:31,136 DEPRECATION: Building 'hic-straw' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hic-straw'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T08:15:31,138 Building wheel for hic-straw (setup.py): started 2025-09-10T08:15:31,138 Destination directory: /tmp/pip-wheel-1270cxle 2025-09-10T08:15:31,138 Running command python setup.py bdist_wheel 2025-09-10T08:15:31,955 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T08:15:31,955 !! 2025-09-10T08:15:31,955 ******************************************************************************** 2025-09-10T08:15:31,955 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T08:15:31,955 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T08:15:31,955 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:15:31,955 or your builds will no longer be supported. 2025-09-10T08:15:31,956 ******************************************************************************** 2025-09-10T08:15:31,956 !! 2025-09-10T08:15:31,956 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T08:15:32,626 running bdist_wheel 2025-09-10T08:15:32,927 running build 2025-09-10T08:15:32,927 running build_ext 2025-09-10T08:15:32,935 creating tmp 2025-09-10T08:15:32,935 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmp9upqm2ts.cpp -o tmp/tmp9upqm2ts.o -std=c++14 2025-09-10T08:15:32,997 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmpwf4el9zq.cpp -o tmp/tmpwf4el9zq.o -fvisibility=hidden 2025-09-10T08:15:33,392 building 'hicstraw' extension 2025-09-10T08:15:33,397 creating build/temp.linux-armv7l-cpython-313/src 2025-09-10T08:15:33,398 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/tmp/pip-wheel-9i8nv5ar/hic-straw_c8dfe1442a0644d58b2d27b1dcde2455/.eggs/pybind11-3.0.1-py3.13.egg/pybind11/include -I/tmp/pip-wheel-9i8nv5ar/hic-straw_c8dfe1442a0644d58b2d27b1dcde2455/.eggs/pybind11-3.0.1-py3.13.egg/pybind11/include -I/usr/include/python3.13 -c src/straw.cpp -o build/temp.linux-armv7l-cpython-313/src/straw.o -DVERSION_INFO=\"1.2.1\" -std=c++14 -fvisibility=hidden 2025-09-10T08:15:39,280 src/straw.cpp: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const std::string&, const std::string&, const std::string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2025-09-10T08:15:39,280 src/straw.cpp:388:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2025-09-10T08:15:39,280 388 | int64_t nBytes = readInt64FromFile(fin); 2025-09-10T08:15:39,281 | ^~~~~~ 2025-09-10T08:15:39,281 src/straw.cpp:390:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2025-09-10T08:15:39,281 390 | int32_t nBytes = readInt32FromFile(fin); 2025-09-10T08:15:39,281 | ^~~~~~ 2025-09-10T08:15:39,283 src/straw.cpp:403:17: warning: unused variable ‘sizeinbytes’ [-Wunused-variable] 2025-09-10T08:15:39,284 403 | int32_t sizeinbytes = readInt32FromFile(fin); 2025-09-10T08:15:39,284 | ^~~~~~~~~~~ 2025-09-10T08:15:39,337 src/straw.cpp: In function ‘std::map readMatrixHttp(CURL*, int64_t, const std::string&, int32_t, float&, int32_t&, int32_t&)’: 2025-09-10T08:15:39,338 src/straw.cpp:606:13: warning: unused variable ‘c1’ [-Wunused-variable] 2025-09-10T08:15:39,338 606 | int32_t c1 = readInt32FromFile(bufin); 2025-09-10T08:15:39,338 | ^~ 2025-09-10T08:15:39,338 src/straw.cpp:607:13: warning: unused variable ‘c2’ [-Wunused-variable] 2025-09-10T08:15:39,338 607 | int32_t c2 = readInt32FromFile(bufin); 2025-09-10T08:15:39,338 | ^~ 2025-09-10T08:15:39,340 src/straw.cpp: In function ‘std::map readMatrix(std::istream&, int64_t, const std::string&, int32_t, float&, int32_t&, int32_t&)’: 2025-09-10T08:15:39,340 src/straw.cpp:634:13: warning: unused variable ‘c1’ [-Wunused-variable] 2025-09-10T08:15:39,340 634 | int32_t c1 = readInt32FromFile(fin); 2025-09-10T08:15:39,340 | ^~ 2025-09-10T08:15:39,340 src/straw.cpp:635:13: warning: unused variable ‘c2’ [-Wunused-variable] 2025-09-10T08:15:39,340 635 | int32_t c2 = readInt32FromFile(fin); 2025-09-10T08:15:39,340 | ^~ 2025-09-10T08:15:39,463 src/straw.cpp: In member function ‘std::vector HiCFile::getChromosomes()’: 2025-09-10T08:15:39,463 src/straw.cpp:1265:30: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘std::map, chromosome>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T08:15:39,463 1265 | for(int32_t i = 0; i < chromosomeMap.size(); i++){ 2025-09-10T08:15:39,463 | ~~^~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:39,474 src/straw.cpp: In function ‘int64_t getNumRecordsForFile(const std::string&, int32_t, bool)’: 2025-09-10T08:15:39,474 src/straw.cpp:1335:26: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T08:15:39,474 1335 | for(int32_t i = 0; i < chromosomes.size(); i++){ 2025-09-10T08:15:39,474 | ~~^~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:39,474 src/straw.cpp:1337:44: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T08:15:39,475 1337 | for(int32_t j = i + indexOffset; j < chromosomes.size(); j++){ 2025-09-10T08:15:39,475 | ~~^~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:53,085 In file included from /usr/include/c++/14/bits/stl_algo.h:61, 2025-09-10T08:15:53,085 from /usr/include/c++/14/algorithm:61, 2025-09-10T08:15:53,085 from src/straw.cpp:36: 2025-09-10T08:15:53,085 /usr/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2025-09-10T08:15:53,085 /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-09-10T08:15:53,085 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2025-09-10T08:15:53,085 | ^~~~~~~~~~~~~ 2025-09-10T08:15:53,245 In file included from /usr/include/c++/14/map:62, 2025-09-10T08:15:53,245 from src/straw.cpp:28: 2025-09-10T08:15:53,245 /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: 2025-09-10T08:15:53,245 /usr/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:53,245 2456 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-09-10T08:15:53,246 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:54,806 /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2025-09-10T08:15:54,806 /usr/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:56,122 In file included from /usr/include/c++/14/map:63: 2025-09-10T08:15:56,123 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:15:56,123 inlined from ‘std::map, chromosome> readHeader(std::istream&, int64_t&, std::string&, int32_t&, int32_t&, int64_t&, int64_t&)’ at src/straw.cpp:259:27: 2025-09-10T08:15:56,123 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:56,123 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:15:56,123 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:56,123 514 | std::tuple(__k), 2025-09-10T08:15:56,123 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:56,123 515 | std::tuple<>()); 2025-09-10T08:15:56,124 | ~~~~~~~~~~~~~~~ 2025-09-10T08:15:56,465 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = indexEntry; _Compare = std::less; _Alloc = std::allocator >]’, 2025-09-10T08:15:56,465 inlined from ‘void populateBlockMap(std::istream&, int32_t, std::map&)’ at src/straw.cpp:543:29: 2025-09-10T08:15:56,465 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:56,465 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:15:56,465 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:56,465 514 | std::tuple(__k), 2025-09-10T08:15:56,465 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:56,465 515 | std::tuple<>()); 2025-09-10T08:15:56,465 | ~~~~~~~~~~~~~~~ 2025-09-10T08:15:57,797 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:15:57,797 inlined from ‘void parsePositions(const std::string&, std::string&, int64_t&, int64_t&, std::map, chromosome>)’ at src/straw.cpp:1296:25: 2025-09-10T08:15:57,797 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:57,797 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:15:57,798 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:57,798 514 | std::tuple(__k), 2025-09-10T08:15:57,798 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:57,798 515 | std::tuple<>()); 2025-09-10T08:15:57,798 | ~~~~~~~~~~~~~~~ 2025-09-10T08:15:58,446 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = indexEntry; _Compare = std::less; _Alloc = std::allocator >]’, 2025-09-10T08:15:58,446 inlined from ‘std::vector MatrixZoomData::getRecords(int64_t, int64_t, int64_t, int64_t)’ at src/straw.cpp:1064:89: 2025-09-10T08:15:58,446 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:15:58,446 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:15:58,447 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:58,447 514 | std::tuple(__k), 2025-09-10T08:15:58,447 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:15:58,447 515 | std::tuple<>()); 2025-09-10T08:15:58,447 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,073 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:16:01,073 inlined from ‘MatrixZoomData* HiCFile::getMatrixZoomData(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, int32_t)’ at src/straw.cpp:1273:47: 2025-09-10T08:16:01,073 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:16:01,073 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:16:01,073 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,073 514 | std::tuple(__k), 2025-09-10T08:16:01,074 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,074 515 | std::tuple<>()); 2025-09-10T08:16:01,074 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,074 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:16:01,074 inlined from ‘MatrixZoomData* HiCFile::getMatrixZoomData(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, int32_t)’ at src/straw.cpp:1274:47: 2025-09-10T08:16:01,074 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:16:01,074 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:16:01,074 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,074 514 | std::tuple(__k), 2025-09-10T08:16:01,075 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,075 515 | std::tuple<>()); 2025-09-10T08:16:01,075 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,235 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:16:01,235 inlined from ‘std::vector straw(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, int32_t)’ at src/straw.cpp:1316:36: 2025-09-10T08:16:01,235 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:16:01,235 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:16:01,235 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,235 514 | std::tuple(__k), 2025-09-10T08:16:01,236 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,236 515 | std::tuple<>()); 2025-09-10T08:16:01,236 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,236 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’, 2025-09-10T08:16:01,236 inlined from ‘std::vector straw(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, int32_t)’ at src/straw.cpp:1316:73: 2025-09-10T08:16:01,236 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:16:01,236 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:16:01,236 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,236 514 | std::tuple(__k), 2025-09-10T08:16:01,237 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,237 515 | std::tuple<>()); 2025-09-10T08:16:01,237 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,840 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = indexEntry; _Compare = std::less; _Alloc = std::allocator >]’, 2025-09-10T08:16:01,840 inlined from ‘int64_t MatrixZoomData::getNumberOfTotalRecords()’ at src/straw.cpp:1170:73, 2025-09-10T08:16:01,840 inlined from ‘int64_t getNumRecordsForFile(const std::string&, int32_t, bool)’ at src/straw.cpp:1345:60: 2025-09-10T08:16:01,840 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2025-09-10T08:16:01,840 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-09-10T08:16:01,840 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,840 514 | std::tuple(__k), 2025-09-10T08:16:01,841 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T08:16:01,841 515 | std::tuple<>()); 2025-09-10T08:16:01,841 | ~~~~~~~~~~~~~~~ 2025-09-10T08:16:25,928 creating build/lib.linux-armv7l-cpython-313 2025-09-10T08:16:25,928 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/src/straw.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/hicstraw.cpython-313-arm-linux-gnueabihf.so -lcurl -lz 2025-09-10T08:16:26,554 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T08:16:26,554 !! 2025-09-10T08:16:26,554 ******************************************************************************** 2025-09-10T08:16:26,554 Please avoid running ``setup.py`` directly. 2025-09-10T08:16:26,554 Instead, use pypa/build, pypa/installer or other 2025-09-10T08:16:26,554 standards-based tools. 2025-09-10T08:16:26,555 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:16:26,555 or your builds will no longer be supported. 2025-09-10T08:16:26,555 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T08:16:26,555 ******************************************************************************** 2025-09-10T08:16:26,555 !! 2025-09-10T08:16:26,555 self.initialize_options() 2025-09-10T08:16:26,632 installing to build/bdist.linux-armv7l/wheel 2025-09-10T08:16:26,632 running install 2025-09-10T08:16:26,654 running install_lib 2025-09-10T08:16:26,730 creating build/bdist.linux-armv7l/wheel 2025-09-10T08:16:26,731 copying build/lib.linux-armv7l-cpython-313/hicstraw.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-10T08:16:26,750 running install_egg_info 2025-09-10T08:16:26,829 running egg_info 2025-09-10T08:16:26,906 writing hic_straw.egg-info/PKG-INFO 2025-09-10T08:16:26,907 writing dependency_links to hic_straw.egg-info/dependency_links.txt 2025-09-10T08:16:26,908 writing requirements to hic_straw.egg-info/requires.txt 2025-09-10T08:16:26,908 writing top-level names to hic_straw.egg-info/top_level.txt 2025-09-10T08:16:26,985 reading manifest file 'hic_straw.egg-info/SOURCES.txt' 2025-09-10T08:16:26,987 reading manifest template 'MANIFEST.in' 2025-09-10T08:16:26,990 writing manifest file 'hic_straw.egg-info/SOURCES.txt' 2025-09-10T08:16:26,991 Copying hic_straw.egg-info to build/bdist.linux-armv7l/wheel/./hic_straw-1.2.1-py3.13.egg-info 2025-09-10T08:16:26,993 running install_scripts 2025-09-10T08:16:27,045 creating build/bdist.linux-armv7l/wheel/hic_straw-1.2.1.dist-info/WHEEL 2025-09-10T08:16:27,046 creating '/tmp/pip-wheel-1270cxle/hic_straw-1.2.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T08:16:27,851 adding 'hicstraw.cpython-313-arm-linux-gnueabihf.so' 2025-09-10T08:16:27,885 adding 'hic_straw-1.2.1.dist-info/METADATA' 2025-09-10T08:16:27,886 adding 'hic_straw-1.2.1.dist-info/WHEEL' 2025-09-10T08:16:27,886 adding 'hic_straw-1.2.1.dist-info/top_level.txt' 2025-09-10T08:16:27,887 adding 'hic_straw-1.2.1.dist-info/RECORD' 2025-09-10T08:16:27,887 removing build/bdist.linux-armv7l/wheel 2025-09-10T08:16:28,034 Building wheel for hic-straw (setup.py): finished with status 'done' 2025-09-10T08:16:28,052 Created wheel for hic-straw: filename=hic_straw-1.2.1-cp313-cp313-linux_armv7l.whl size=1740898 sha256=d10012db7d10726043d56a61622b48df4b884c214d3fe8dd9a798ea9240e513c 2025-09-10T08:16:28,053 Stored in directory: /tmp/pip-ephem-wheel-cache-ddu3rsl_/wheels/ab/b8/70/d5870ad688fad87580545f1f864d3a9fa7f1a6bb26a5753669 2025-09-10T08:16:28,061 Successfully built hic-straw 2025-09-10T08:16:28,066 Removed build tracker: '/tmp/pip-build-tracker-_ckk5xrs'