2025-09-10T08:31:43,835 Created temporary directory: /tmp/pip-build-tracker-3gwtf519 2025-09-10T08:31:43,835 Initialized build tracking at /tmp/pip-build-tracker-3gwtf519 2025-09-10T08:31:43,835 Created build tracker: /tmp/pip-build-tracker-3gwtf519 2025-09-10T08:31:43,835 Entered build tracker: /tmp/pip-build-tracker-3gwtf519 2025-09-10T08:31:43,836 Created temporary directory: /tmp/pip-wheel-nio_jur4 2025-09-10T08:31:43,839 Created temporary directory: /tmp/pip-ephem-wheel-cache-j0cjuvqd 2025-09-10T08:31:43,897 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T08:31:43,899 2 location(s) to search for versions of repair-seq: 2025-09-10T08:31:43,899 * https://pypi.org/simple/repair-seq/ 2025-09-10T08:31:43,899 * https://www.piwheels.org/simple/repair-seq/ 2025-09-10T08:31:43,899 Fetching project page and analyzing links: https://pypi.org/simple/repair-seq/ 2025-09-10T08:31:43,899 Getting page https://pypi.org/simple/repair-seq/ 2025-09-10T08:31:43,901 Found index url https://pypi.org/simple/ 2025-09-10T08:31:43,971 Fetched page https://pypi.org/simple/repair-seq/ as application/vnd.pypi.simple.v1+json 2025-09-10T08:31:43,972 Found link https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.6), version: 1.0.2 2025-09-10T08:31:43,973 Found link https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.7), version: 1.0.3 2025-09-10T08:31:43,973 Fetching project page and analyzing links: https://www.piwheels.org/simple/repair-seq/ 2025-09-10T08:31:43,973 Getting page https://www.piwheels.org/simple/repair-seq/ 2025-09-10T08:31:43,974 Found index url https://www.piwheels.org/simple/ 2025-09-10T08:31:44,079 Fetched page https://www.piwheels.org/simple/repair-seq/ as text/html 2025-09-10T08:31:44,082 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=137466bd1946aa68c800c7f1e2ee0c6c5eb2f172e64628e3369f7e887934eaab (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,082 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=137466bd1946aa68c800c7f1e2ee0c6c5eb2f172e64628e3369f7e887934eaab (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=92ee99fae5831b1cbf0488ecf1a8c56e0e99518c95e27d34863ad531d7cdc6a6 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=92ee99fae5831b1cbf0488ecf1a8c56e0e99518c95e27d34863ad531d7cdc6a6 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=2ddc1b3b90d10422dd6d63b7ae21a386b66ef4f1829bc6fa2aa2e7c609e4197b (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=2ddc1b3b90d10422dd6d63b7ae21a386b66ef4f1829bc6fa2aa2e7c609e4197b (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=03c64f1ef45924c2b649ff9b952e56aa42df6a1263672db1e9f80bf99f7d02b1 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=03c64f1ef45924c2b649ff9b952e56aa42df6a1263672db1e9f80bf99f7d02b1 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,083 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,084 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,084 Skipping link: No binaries permitted for repair-seq: https://archive1.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,084 Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp313-cp313-linux_armv6l.whl#sha256=1c6236083bb0b3750f5db5aced40ca91cff9f0566e19edd2c24f22b514f1e8fa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,084 Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp313-cp313-linux_armv7l.whl#sha256=1c6236083bb0b3750f5db5aced40ca91cff9f0566e19edd2c24f22b514f1e8fa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6) 2025-09-10T08:31:44,084 Skipping link: not a file: https://www.piwheels.org/simple/repair-seq/ 2025-09-10T08:31:44,084 Skipping link: not a file: https://pypi.org/simple/repair-seq/ 2025-09-10T08:31:44,110 Given no hashes to check 1 links for project 'repair-seq': discarding no candidates 2025-09-10T08:31:44,111 Collecting repair-seq==1.0.3 2025-09-10T08:31:44,113 Created temporary directory: /tmp/pip-unpack-8w2rs_ux 2025-09-10T08:31:44,270 Downloading repair_seq-1.0.3.tar.gz (1.4 MB) 2025-09-10T08:31:44,664 Added repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-3gwtf519' 2025-09-10T08:31:44,665 Running setup.py (path:/tmp/pip-wheel-nio_jur4/repair-seq_cc9723dee37949fb82a33cac621f1ab4/setup.py) egg_info for package repair-seq 2025-09-10T08:31:44,665 Created temporary directory: /tmp/pip-pip-egg-info-jfkmfkzm 2025-09-10T08:31:44,665 Preparing metadata (setup.py): started 2025-09-10T08:31:44,666 Running command python setup.py egg_info 2025-09-10T08:31:45,320 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T08:31:45,320 !! 2025-09-10T08:31:45,320 ******************************************************************************** 2025-09-10T08:31:45,320 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T08:31:45,320 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T08:31:45,320 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:31:45,321 or your builds will no longer be supported. 2025-09-10T08:31:45,321 ******************************************************************************** 2025-09-10T08:31:45,321 !! 2025-09-10T08:31:45,321 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T08:31:45,860 running egg_info 2025-09-10T08:31:45,935 creating /tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info 2025-09-10T08:31:45,935 writing /tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/PKG-INFO 2025-09-10T08:31:45,936 writing dependency_links to /tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/dependency_links.txt 2025-09-10T08:31:45,937 writing requirements to /tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/requires.txt 2025-09-10T08:31:45,937 writing top-level names to /tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/top_level.txt 2025-09-10T08:31:45,938 writing manifest file '/tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/SOURCES.txt' 2025-09-10T08:31:46,306 reading manifest file '/tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/SOURCES.txt' 2025-09-10T08:31:46,309 writing manifest file '/tmp/pip-pip-egg-info-jfkmfkzm/repair_seq.egg-info/SOURCES.txt' 2025-09-10T08:31:46,424 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T08:31:46,429 Source in /tmp/pip-wheel-nio_jur4/repair-seq_cc9723dee37949fb82a33cac621f1ab4 has version 1.0.3, which satisfies requirement repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz 2025-09-10T08:31:46,429 Removed repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-3gwtf519' 2025-09-10T08:31:46,435 Created temporary directory: /tmp/pip-unpack-mviet85y 2025-09-10T08:31:46,435 Created temporary directory: /tmp/pip-unpack-gr219djc 2025-09-10T08:31:46,435 Building wheels for collected packages: repair-seq 2025-09-10T08:31:46,437 Created temporary directory: /tmp/pip-wheel-swg5k3tk 2025-09-10T08:31:46,437 DEPRECATION: Building 'repair-seq' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'repair-seq'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T08:31:46,439 Building wheel for repair-seq (setup.py): started 2025-09-10T08:31:46,439 Destination directory: /tmp/pip-wheel-swg5k3tk 2025-09-10T08:31:46,440 Running command python setup.py bdist_wheel 2025-09-10T08:31:47,072 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T08:31:47,072 !! 2025-09-10T08:31:47,072 ******************************************************************************** 2025-09-10T08:31:47,072 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T08:31:47,072 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T08:31:47,073 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:31:47,073 or your builds will no longer be supported. 2025-09-10T08:31:47,073 ******************************************************************************** 2025-09-10T08:31:47,073 !! 2025-09-10T08:31:47,073 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T08:31:47,535 running bdist_wheel 2025-09-10T08:31:47,894 running build 2025-09-10T08:31:47,894 running build_py 2025-09-10T08:31:47,971 creating build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,971 copying repair_seq/twin_prime_layout.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,972 copying repair_seq/statistics.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,972 copying repair_seq/single_end_experiment.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,973 copying repair_seq/replicates.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,974 copying repair_seq/quantiles.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,974 copying repair_seq/prime_editing_layout.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,975 copying repair_seq/prime_editing_experiment.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,976 copying repair_seq/pooled_screen.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,977 copying repair_seq/pooled_layout.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,978 copying repair_seq/perturb_seq.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,978 copying repair_seq/paired_end_experiment.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,979 copying repair_seq/guide_library.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,979 copying repair_seq/experiment_group.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,980 copying repair_seq/demux_gDNA.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,980 copying repair_seq/demux_for_SRA.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,981 copying repair_seq/demux_arrayed_experiments.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,981 copying repair_seq/demux.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,982 copying repair_seq/convert_outcomes.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,982 copying repair_seq/common_sequences.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,983 copying repair_seq/collapse.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,983 copying repair_seq/coherence.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,984 copying repair_seq/cluster.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,985 copying repair_seq/build_guide_specific_targets.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,985 copying repair_seq/bootstrapper.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,986 copying repair_seq/beta_binomial.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,986 copying repair_seq/base_editor.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,987 copying repair_seq/arrayed_experiment_group.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,987 copying repair_seq/__init__.py -> build/lib.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:47,988 creating build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,989 copying repair_seq/visualize/volcano.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,989 copying repair_seq/visualize/templated_insertions.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,990 copying repair_seq/visualize/scratch.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,990 copying repair_seq/visualize/scatter.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,991 copying repair_seq/visualize/outcome_diagrams.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,992 copying repair_seq/visualize/heatmap.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,993 copying repair_seq/visualize/gene_significance.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,993 copying repair_seq/visualize/conversion_tracts.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,994 copying repair_seq/visualize/clustermap.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,994 copying repair_seq/visualize/__init__.py -> build/lib.linux-armv7l-cpython-313/repair_seq/visualize 2025-09-10T08:31:47,995 creating build/lib.linux-armv7l-cpython-313/repair_seq/test 2025-09-10T08:31:47,996 copying repair_seq/test/test_read_sets.py -> build/lib.linux-armv7l-cpython-313/repair_seq/test 2025-09-10T08:31:47,996 copying repair_seq/test/test_pegRNAs.py -> build/lib.linux-armv7l-cpython-313/repair_seq/test 2025-09-10T08:31:47,997 copying repair_seq/test/build_read_sets.py -> build/lib.linux-armv7l-cpython-313/repair_seq/test 2025-09-10T08:31:48,000 running build_ext 2025-09-10T08:31:48,342 Compiling repair_seq/collapse_cython.pyx because it changed. 2025-09-10T08:31:48,342 [1/1] Cythonizing repair_seq/collapse_cython.pyx 2025-09-10T08:31:50,933 building 'collapse_cython' extension 2025-09-10T08:31:50,934 creating build/temp.linux-armv7l-cpython-313/repair_seq 2025-09-10T08:31:50,934 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c repair_seq/collapse_cython.c -o build/temp.linux-armv7l-cpython-313/repair_seq/collapse_cython.o 2025-09-10T08:32:11,126 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/repair_seq/collapse_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/repair_seq/collapse_cython.cpython-313-arm-linux-gnueabihf.so 2025-09-10T08:32:11,271 running build_scripts 2025-09-10T08:32:11,271 creating build/scripts-3.13 2025-09-10T08:32:11,272 copying and adjusting repair_seq/repair-seq -> build/scripts-3.13 2025-09-10T08:32:11,272 changing mode of build/scripts-3.13/repair-seq from 644 to 755 2025-09-10T08:32:11,352 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T08:32:11,352 !! 2025-09-10T08:32:11,352 ******************************************************************************** 2025-09-10T08:32:11,352 Please avoid running ``setup.py`` directly. 2025-09-10T08:32:11,352 Instead, use pypa/build, pypa/installer or other 2025-09-10T08:32:11,352 standards-based tools. 2025-09-10T08:32:11,353 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T08:32:11,353 or your builds will no longer be supported. 2025-09-10T08:32:11,353 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T08:32:11,353 ******************************************************************************** 2025-09-10T08:32:11,353 !! 2025-09-10T08:32:11,353 self.initialize_options() 2025-09-10T08:32:11,426 installing to build/bdist.linux-armv7l/wheel 2025-09-10T08:32:11,426 running install 2025-09-10T08:32:11,449 running install_lib 2025-09-10T08:32:11,521 creating build/bdist.linux-armv7l/wheel 2025-09-10T08:32:11,522 creating build/bdist.linux-armv7l/wheel/repair_seq 2025-09-10T08:32:11,522 copying build/lib.linux-armv7l-cpython-313/repair_seq/collapse_cython.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,526 creating build/bdist.linux-armv7l/wheel/repair_seq/test 2025-09-10T08:32:11,526 copying build/lib.linux-armv7l-cpython-313/repair_seq/test/build_read_sets.py -> build/bdist.linux-armv7l/wheel/./repair_seq/test 2025-09-10T08:32:11,527 copying build/lib.linux-armv7l-cpython-313/repair_seq/test/test_pegRNAs.py -> build/bdist.linux-armv7l/wheel/./repair_seq/test 2025-09-10T08:32:11,527 copying build/lib.linux-armv7l-cpython-313/repair_seq/test/test_read_sets.py -> build/bdist.linux-armv7l/wheel/./repair_seq/test 2025-09-10T08:32:11,528 creating build/bdist.linux-armv7l/wheel/repair_seq/visualize 2025-09-10T08:32:11,528 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,528 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/clustermap.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,529 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/conversion_tracts.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,529 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/gene_significance.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,530 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/heatmap.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,531 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/outcome_diagrams.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,531 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/scatter.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,532 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/scratch.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,532 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/templated_insertions.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,533 copying build/lib.linux-armv7l-cpython-313/repair_seq/visualize/volcano.py -> build/bdist.linux-armv7l/wheel/./repair_seq/visualize 2025-09-10T08:32:11,533 copying build/lib.linux-armv7l-cpython-313/repair_seq/__init__.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,533 copying build/lib.linux-armv7l-cpython-313/repair_seq/arrayed_experiment_group.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,534 copying build/lib.linux-armv7l-cpython-313/repair_seq/base_editor.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,534 copying build/lib.linux-armv7l-cpython-313/repair_seq/beta_binomial.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,535 copying build/lib.linux-armv7l-cpython-313/repair_seq/bootstrapper.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,535 copying build/lib.linux-armv7l-cpython-313/repair_seq/build_guide_specific_targets.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,535 copying build/lib.linux-armv7l-cpython-313/repair_seq/cluster.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,536 copying build/lib.linux-armv7l-cpython-313/repair_seq/coherence.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,536 copying build/lib.linux-armv7l-cpython-313/repair_seq/collapse.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,537 copying build/lib.linux-armv7l-cpython-313/repair_seq/common_sequences.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,537 copying build/lib.linux-armv7l-cpython-313/repair_seq/convert_outcomes.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,537 copying build/lib.linux-armv7l-cpython-313/repair_seq/demux.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,538 copying build/lib.linux-armv7l-cpython-313/repair_seq/demux_arrayed_experiments.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,538 copying build/lib.linux-armv7l-cpython-313/repair_seq/demux_for_SRA.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,539 copying build/lib.linux-armv7l-cpython-313/repair_seq/demux_gDNA.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,539 copying build/lib.linux-armv7l-cpython-313/repair_seq/experiment_group.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,539 copying build/lib.linux-armv7l-cpython-313/repair_seq/guide_library.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,540 copying build/lib.linux-armv7l-cpython-313/repair_seq/paired_end_experiment.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,540 copying build/lib.linux-armv7l-cpython-313/repair_seq/perturb_seq.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,541 copying build/lib.linux-armv7l-cpython-313/repair_seq/pooled_layout.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,541 copying build/lib.linux-armv7l-cpython-313/repair_seq/pooled_screen.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,542 copying build/lib.linux-armv7l-cpython-313/repair_seq/prime_editing_experiment.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,543 copying build/lib.linux-armv7l-cpython-313/repair_seq/prime_editing_layout.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,543 copying build/lib.linux-armv7l-cpython-313/repair_seq/quantiles.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,544 copying build/lib.linux-armv7l-cpython-313/repair_seq/replicates.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,544 copying build/lib.linux-armv7l-cpython-313/repair_seq/single_end_experiment.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,545 copying build/lib.linux-armv7l-cpython-313/repair_seq/statistics.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,545 copying build/lib.linux-armv7l-cpython-313/repair_seq/twin_prime_layout.py -> build/bdist.linux-armv7l/wheel/./repair_seq 2025-09-10T08:32:11,546 running install_egg_info 2025-09-10T08:32:11,619 running egg_info 2025-09-10T08:32:11,691 writing repair_seq.egg-info/PKG-INFO 2025-09-10T08:32:11,692 writing dependency_links to repair_seq.egg-info/dependency_links.txt 2025-09-10T08:32:11,693 writing requirements to repair_seq.egg-info/requires.txt 2025-09-10T08:32:11,693 writing top-level names to repair_seq.egg-info/top_level.txt 2025-09-10T08:32:11,768 reading manifest file 'repair_seq.egg-info/SOURCES.txt' 2025-09-10T08:32:11,782 writing manifest file 'repair_seq.egg-info/SOURCES.txt' 2025-09-10T08:32:11,783 Copying repair_seq.egg-info to build/bdist.linux-armv7l/wheel/./repair_seq-1.0.3-py3.13.egg-info 2025-09-10T08:32:11,784 running install_scripts 2025-09-10T08:32:11,785 creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data/scripts 2025-09-10T08:32:11,785 copying build/scripts-3.13/repair-seq -> build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data/scripts 2025-09-10T08:32:11,786 changing mode of build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data/scripts/repair-seq to 755 2025-09-10T08:32:11,834 creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.dist-info/WHEEL 2025-09-10T08:32:11,835 creating '/tmp/pip-wheel-swg5k3tk/repair_seq-1.0.3-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T08:32:11,836 adding 'repair_seq/__init__.py' 2025-09-10T08:32:11,840 adding 'repair_seq/arrayed_experiment_group.py' 2025-09-10T08:32:11,841 adding 'repair_seq/base_editor.py' 2025-09-10T08:32:11,842 adding 'repair_seq/beta_binomial.py' 2025-09-10T08:32:11,843 adding 'repair_seq/bootstrapper.py' 2025-09-10T08:32:11,844 adding 'repair_seq/build_guide_specific_targets.py' 2025-09-10T08:32:11,847 adding 'repair_seq/cluster.py' 2025-09-10T08:32:11,848 adding 'repair_seq/coherence.py' 2025-09-10T08:32:11,849 adding 'repair_seq/collapse.py' 2025-09-10T08:32:12,062 adding 'repair_seq/collapse_cython.cpython-313-arm-linux-gnueabihf.so' 2025-09-10T08:32:12,070 adding 'repair_seq/common_sequences.py' 2025-09-10T08:32:12,071 adding 'repair_seq/convert_outcomes.py' 2025-09-10T08:32:12,072 adding 'repair_seq/demux.py' 2025-09-10T08:32:12,073 adding 'repair_seq/demux_arrayed_experiments.py' 2025-09-10T08:32:12,074 adding 'repair_seq/demux_for_SRA.py' 2025-09-10T08:32:12,076 adding 'repair_seq/demux_gDNA.py' 2025-09-10T08:32:12,078 adding 'repair_seq/experiment_group.py' 2025-09-10T08:32:12,079 adding 'repair_seq/guide_library.py' 2025-09-10T08:32:12,080 adding 'repair_seq/paired_end_experiment.py' 2025-09-10T08:32:12,082 adding 'repair_seq/perturb_seq.py' 2025-09-10T08:32:12,092 adding 'repair_seq/pooled_layout.py' 2025-09-10T08:32:12,104 adding 'repair_seq/pooled_screen.py' 2025-09-10T08:32:12,107 adding 'repair_seq/prime_editing_experiment.py' 2025-09-10T08:32:12,116 adding 'repair_seq/prime_editing_layout.py' 2025-09-10T08:32:12,117 adding 'repair_seq/quantiles.py' 2025-09-10T08:32:12,120 adding 'repair_seq/replicates.py' 2025-09-10T08:32:12,121 adding 'repair_seq/single_end_experiment.py' 2025-09-10T08:32:12,122 adding 'repair_seq/statistics.py' 2025-09-10T08:32:12,124 adding 'repair_seq/twin_prime_layout.py' 2025-09-10T08:32:12,125 adding 'repair_seq/test/build_read_sets.py' 2025-09-10T08:32:12,126 adding 'repair_seq/test/test_pegRNAs.py' 2025-09-10T08:32:12,127 adding 'repair_seq/test/test_read_sets.py' 2025-09-10T08:32:12,128 adding 'repair_seq/visualize/__init__.py' 2025-09-10T08:32:12,130 adding 'repair_seq/visualize/clustermap.py' 2025-09-10T08:32:12,132 adding 'repair_seq/visualize/conversion_tracts.py' 2025-09-10T08:32:12,135 adding 'repair_seq/visualize/gene_significance.py' 2025-09-10T08:32:12,140 adding 'repair_seq/visualize/heatmap.py' 2025-09-10T08:32:12,145 adding 'repair_seq/visualize/outcome_diagrams.py' 2025-09-10T08:32:12,148 adding 'repair_seq/visualize/scatter.py' 2025-09-10T08:32:12,153 adding 'repair_seq/visualize/scratch.py' 2025-09-10T08:32:12,154 adding 'repair_seq/visualize/templated_insertions.py' 2025-09-10T08:32:12,155 adding 'repair_seq/visualize/volcano.py' 2025-09-10T08:32:12,156 adding 'repair_seq-1.0.3.data/scripts/repair-seq' 2025-09-10T08:32:12,156 adding 'repair_seq-1.0.3.dist-info/METADATA' 2025-09-10T08:32:12,157 adding 'repair_seq-1.0.3.dist-info/WHEEL' 2025-09-10T08:32:12,157 adding 'repair_seq-1.0.3.dist-info/top_level.txt' 2025-09-10T08:32:12,159 adding 'repair_seq-1.0.3.dist-info/RECORD' 2025-09-10T08:32:12,159 removing build/bdist.linux-armv7l/wheel 2025-09-10T08:32:12,596 Building wheel for repair-seq (setup.py): finished with status 'done' 2025-09-10T08:32:12,603 Created wheel for repair-seq: filename=repair_seq-1.0.3-cp313-cp313-linux_armv7l.whl size=606324 sha256=bf1132ba5f819c6f8f44bdcc135b553ddd8d1fe3b13e55ca283f9fb4a0ab5b4c 2025-09-10T08:32:12,604 Stored in directory: /tmp/pip-ephem-wheel-cache-j0cjuvqd/wheels/32/67/a6/63546e1167980e0cc778850b1a8694abf441fcb3220bf2ed0e 2025-09-10T08:32:12,612 Successfully built repair-seq 2025-09-10T08:32:12,615 Removed build tracker: '/tmp/pip-build-tracker-3gwtf519'