2025-09-10T14:37:00,946 Created temporary directory: /tmp/pip-build-tracker-xnhep4rr 2025-09-10T14:37:00,946 Initialized build tracking at /tmp/pip-build-tracker-xnhep4rr 2025-09-10T14:37:00,947 Created build tracker: /tmp/pip-build-tracker-xnhep4rr 2025-09-10T14:37:00,947 Entered build tracker: /tmp/pip-build-tracker-xnhep4rr 2025-09-10T14:37:00,947 Created temporary directory: /tmp/pip-wheel-vz7cureh 2025-09-10T14:37:00,950 Created temporary directory: /tmp/pip-ephem-wheel-cache-nnddsoai 2025-09-10T14:37:01,009 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T14:37:01,012 2 location(s) to search for versions of ont-bonito: 2025-09-10T14:37:01,012 * https://pypi.org/simple/ont-bonito/ 2025-09-10T14:37:01,012 * https://www.piwheels.org/simple/ont-bonito/ 2025-09-10T14:37:01,012 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito/ 2025-09-10T14:37:01,012 Getting page https://pypi.org/simple/ont-bonito/ 2025-09-10T14:37:01,013 Found index url https://pypi.org/simple/ 2025-09-10T14:37:01,084 Fetched page https://pypi.org/simple/ont-bonito/ as application/vnd.pypi.simple.v1+json 2025-09-10T14:37:01,090 Found link https://files.pythonhosted.org/packages/d9/db/561675d546075abac5f22cd30a78c084af0cf6aa376ace242405b801658f/ont-bonito-0.0.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.1 2025-09-10T14:37:01,091 Found link https://files.pythonhosted.org/packages/1e/d1/8e91e83711e166c9da2dd39017c9ac471c516b87b48bcdc0e25a4cb12d95/ont-bonito-0.0.3.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.3 2025-09-10T14:37:01,091 Found link https://files.pythonhosted.org/packages/e6/97/ee764ddc586c5fcf9be804289a26d80ce31a1eabfd550b1276dead9b9de1/ont-bonito-0.0.4.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.4 2025-09-10T14:37:01,091 Found link https://files.pythonhosted.org/packages/51/2a/771af15029be16025022b91ee7675af7945fc0350e3c1190c7d1cad934d3/ont-bonito-0.0.5.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.5 2025-09-10T14:37:01,092 Found link https://files.pythonhosted.org/packages/60/99/f9b4e7db2b81d07ca49873fef96a1d3378248ee8730cf07fda1231cd8910/ont-bonito-0.0.7.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.7 2025-09-10T14:37:01,092 Found link https://files.pythonhosted.org/packages/3a/cc/a64e90955addd8b831e43decc9ee2cd8f8395c7c44ceef250bc60f2550f8/ont-bonito-0.0.8.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.0.8 2025-09-10T14:37:01,092 Found link https://files.pythonhosted.org/packages/29/db/59fef46c323e86347b7558ad3c5a775037ef6923bc62b7e15173fefeed82/ont-bonito-0.1.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.1.0 2025-09-10T14:37:01,092 Found link https://files.pythonhosted.org/packages/78/52/9f978f27aa96ccbb07ed86f25d599c28c80f41f6414f8035372e7acc00f6/ont-bonito-0.1.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.1.2 2025-09-10T14:37:01,093 Found link https://files.pythonhosted.org/packages/9c/53/044d2ab2e0d2c00f5331aa4f1623c888dbc818c7fba70d069d80529ed113/ont-bonito-0.1.3.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.1.3 2025-09-10T14:37:01,093 Found link https://files.pythonhosted.org/packages/59/8d/0c2eb31f833160e51648eae8d49bd6610bd6fad6ae5879e22a76187b5979/ont-bonito-0.1.4.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.1.4 2025-09-10T14:37:01,093 Found link https://files.pythonhosted.org/packages/95/fa/8a178168ee44c7f66a4239e4a2a1569896e787397080d1e1e0c2b1a331c2/ont-bonito-0.1.5.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.1.5 2025-09-10T14:37:01,093 Found link https://files.pythonhosted.org/packages/43/3a/37759ab5cca2b641f6e8000ad79cf4c86708efd3a1a1cafd4112ca7abcc7/ont-bonito-0.2.0a1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.0a1 2025-09-10T14:37:01,093 Found link https://files.pythonhosted.org/packages/9f/92/8bc665b17c156ddd88ca5d5aab8a0df099ffb508068ca6b773aa5695973b/ont-bonito-0.2.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.0 2025-09-10T14:37:01,094 Found link https://files.pythonhosted.org/packages/41/fc/a2d21c9eeca274194294321505035094e407f3eed3466a831eb6de657912/ont-bonito-0.2.1a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.1a0 2025-09-10T14:37:01,094 Found link https://files.pythonhosted.org/packages/8d/1e/b5ea1a1ddcd184c797ebfe251ecbf23fa97850515acc175c8671d1f425d2/ont-bonito-0.2.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.1 2025-09-10T14:37:01,094 Found link https://files.pythonhosted.org/packages/9b/3f/5cc8fa4703f5322956fff3d14c50d10a4bc46cd116bb77afc107f9213377/ont-bonito-0.2.2a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.2a0 2025-09-10T14:37:01,094 Found link https://files.pythonhosted.org/packages/b4/38/79e98f2506fd0152989541ca93f25838e4017526c54e2b9b57df806ab28e/ont-bonito-0.2.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.2 2025-09-10T14:37:01,095 Found link https://files.pythonhosted.org/packages/7b/5c/c58113d696ef7b470cae9308134d039a156de85bca856fab94f2024e5e7c/ont-bonito-0.2.3a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.3a0 2025-09-10T14:37:01,095 Found link https://files.pythonhosted.org/packages/08/7f/c156a67a0aeb65da44d42c877d277e3135c79d934c943a64cff626fd317e/ont-bonito-0.2.3.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.2.3 2025-09-10T14:37:01,095 Found link https://files.pythonhosted.org/packages/64/2f/96816e8337128957d036e1a38b0ce8a5fa6b56fc6bd37462d56880b988de/ont-bonito-0.3.0a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.0a0 2025-09-10T14:37:01,095 Found link https://files.pythonhosted.org/packages/dd/bd/b1b51d7e504ac8b8f39a27acf479782be64d81d384fa5e4900050fdaa12d/ont-bonito-0.3.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.0 2025-09-10T14:37:01,095 Found link https://files.pythonhosted.org/packages/8e/95/db2f8b693a1f73ca3e26933e1ebe5413580c66124623ac7093b46dcccd88/ont-bonito-0.3.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.1 2025-09-10T14:37:01,096 Found link https://files.pythonhosted.org/packages/4f/e2/0f912ead53ac7d84aa202e74ec661d619bf44a736a609eb7e18b9b67ad16/ont-bonito-0.3.2a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.2a0 2025-09-10T14:37:01,096 Skipping link: No binaries permitted for ont-bonito: https://files.pythonhosted.org/packages/da/99/a3b4beaafacbd03215783a5e9e8f85cefbfcf66ca0d3341a0886acb0f7bc/ont_bonito-0.3.2a0-py3-none-any.whl (from https://pypi.org/simple/ont-bonito/) 2025-09-10T14:37:01,096 Found link https://files.pythonhosted.org/packages/33/5e/124215a3710a22980a3c6eb6af39a26550141e174452e7f38809a4738f21/ont-bonito-0.3.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.2 2025-09-10T14:37:01,096 Found link https://files.pythonhosted.org/packages/98/32/dd17e7b95b93e933615f0ab8d8b49d8a45193fe0161cbbb4b7c34e378f8f/ont-bonito-0.3.3b0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.3b0 2025-09-10T14:37:01,097 Found link https://files.pythonhosted.org/packages/24/23/1ed6f6a1fac7f0c16390b336283cec45d97d16221cef111b8df462ce9e4f/ont-bonito-0.3.5a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.5a0 2025-09-10T14:37:01,097 Found link https://files.pythonhosted.org/packages/50/8a/8733ae566d78e314a287358c58ef84390eac631838842e3695112ce63695/ont-bonito-0.3.5.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.5 2025-09-10T14:37:01,097 Found link https://files.pythonhosted.org/packages/eb/33/fbea6ee60a3fedc3caff883b416583142d18c07ed05b5408f2f1ffa8493e/ont-bonito-0.3.6b0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.6b0 2025-09-10T14:37:01,097 Found link https://files.pythonhosted.org/packages/0d/23/33458eb3c383f50eeb0bb59b4b0537a1bea3b487af6c8ca2ab897bb8ebe4/ont-bonito-0.3.6.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.6 2025-09-10T14:37:01,097 Found link https://files.pythonhosted.org/packages/09/a7/b82cd7ebd8aa7aab16444198185236f989b7b32b30f612b5aca49f26647e/ont-bonito-0.3.7.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.7 2025-09-10T14:37:01,098 Found link https://files.pythonhosted.org/packages/1f/49/51f19e59d17a1b224639f730164f40794e37619b7e6929d5c6d79acf49b6/ont-bonito-0.3.8a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.8a0 2025-09-10T14:37:01,098 Found link https://files.pythonhosted.org/packages/6e/31/1c2bc95210d36d0feedc9b70aab58ad4617ec0a2ec2d4243c642fde12691/ont-bonito-0.3.8.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.3.8 2025-09-10T14:37:01,098 Found link https://files.pythonhosted.org/packages/69/84/727b764926e98bdb04998e2245cbbea2913b8f08a3e4804b304382e53272/ont-bonito-0.4.0a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.4.0a0 2025-09-10T14:37:01,098 Found link https://files.pythonhosted.org/packages/50/d4/80be7268492c2e8862d883ad668761548b3ef2f6d5593b03b4ec872e8e77/ont-bonito-0.4.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.4.0 2025-09-10T14:37:01,098 Found link https://files.pythonhosted.org/packages/8a/1e/66b8a54e3a834ace2ca7da0cdcddb8e8aba6378a1138eae8d23a69717365/ont-bonito-0.5.0a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.0a0 2025-09-10T14:37:01,099 Found link https://files.pythonhosted.org/packages/c0/67/767711facb8ba83705205c97200da7c38ee237ea4f75ac238837a34470d7/ont-bonito-0.5.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.0 2025-09-10T14:37:01,099 Found link https://files.pythonhosted.org/packages/c3/83/92100e7d0d0c2f6fe308e0b59abca48abbc0964ae8ebe7ba3661db363d3f/ont-bonito-0.5.1a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.1a0 2025-09-10T14:37:01,099 Found link https://files.pythonhosted.org/packages/83/01/fd86e1b52f88835a57a95fffd87310b45943c2638d7f0d5ddc5d5d79f963/ont-bonito-0.5.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.1 2025-09-10T14:37:01,099 Found link https://files.pythonhosted.org/packages/fb/c4/ac0604938255e78079971e40d5c3f899c8a4da86b55555459cdcf84800ef/ont-bonito-0.5.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.2 2025-09-10T14:37:01,100 Found link https://files.pythonhosted.org/packages/c7/56/99ed87537a1bca4e37db92bc863e5b930911b12c5326da698f2250b0ca78/ont-bonito-0.5.3.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.5.3 2025-09-10T14:37:01,100 Found link https://files.pythonhosted.org/packages/5c/88/be3977f52a9f5d4c220ce5ba1c2ee13b86e190f1fec97fc1c7a8c1f38cbc/ont-bonito-0.6.0a0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.6.0a0 2025-09-10T14:37:01,100 Found link https://files.pythonhosted.org/packages/76/c6/80785be7f0c43e8547741e2e39c3ce03fc46bced660fe92662830b70fc39/ont-bonito-0.6.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.6.0 2025-09-10T14:37:01,100 Found link https://files.pythonhosted.org/packages/44/81/fd2d05d745a203673a8540581af478b9c9e512e866e813efde040816a9dd/ont-bonito-0.6.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.6.1 2025-09-10T14:37:01,100 Found link https://files.pythonhosted.org/packages/4a/65/64a411f93b81cacf9df362e6b287fc0558cbf39aa00749e960446aa9d6d5/ont-bonito-0.6.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.6.2 2025-09-10T14:37:01,101 Found link https://files.pythonhosted.org/packages/25/93/edefed8f84d0d26f786ceac1127f34994d83d3bd9008cc36417628b52a29/ont-bonito-0.7.0.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.7.0 2025-09-10T14:37:01,101 Found link https://files.pythonhosted.org/packages/ef/ad/ebed4ae6c1b2a7ddeb2c5af2c6fc84ad964cc2f326970dafbb0e75d9d18b/ont-bonito-0.7.1.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.7.1 2025-09-10T14:37:01,101 Found link https://files.pythonhosted.org/packages/c8/fe/dbe281544dff26a76fc448d50eaa05b45a6bcf114f48485db4e0d90bb0d4/ont-bonito-0.7.2.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.7.2 2025-09-10T14:37:01,101 Found link https://files.pythonhosted.org/packages/f9/c5/0809ab32bc8e8df3b68de4c58a385541fa25f16ff909084ce59d6a2c3410/ont-bonito-0.7.3.tar.gz (from https://pypi.org/simple/ont-bonito/), version: 0.7.3 2025-09-10T14:37:01,102 Found link https://files.pythonhosted.org/packages/f2/e9/2310bc3981df09815f6899a70792e6799233e7aa2b931f70b0aa60376816/ont-bonito-0.8.1.tar.gz (from https://pypi.org/simple/ont-bonito/) (requires-python:>=3.8), version: 0.8.1 2025-09-10T14:37:01,103 Found link https://files.pythonhosted.org/packages/f3/7c/54fa467d6de3e141d53a28b9d558bcd9958312c6b0b25e434b9056c1e18b/ont_bonito-0.9.0.tar.gz (from https://pypi.org/simple/ont-bonito/) (requires-python:>=3.9), version: 0.9.0 2025-09-10T14:37:01,103 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito/ 2025-09-10T14:37:01,103 Getting page https://www.piwheels.org/simple/ont-bonito/ 2025-09-10T14:37:01,104 Found index url https://www.piwheels.org/simple/ 2025-09-10T14:37:01,187 Fetched page https://www.piwheels.org/simple/ont-bonito/ as text/html 2025-09-10T14:37:01,196 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.9.0-py3-none-any.whl#sha256=64ec00f0cb932f8fb9ea7c2a5e0fc26b147afd4a3357b37e95d7121344ab5928 (from https://www.piwheels.org/simple/ont-bonito/) (requires-python:>=3.9) 2025-09-10T14:37:01,196 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.8.1-py3-none-any.whl#sha256=1245426c8d34ab785aefcbc2d5ae12f955a8129454fb86315ba5d2189152d955 (from https://www.piwheels.org/simple/ont-bonito/) (requires-python:>=3.8) 2025-09-10T14:37:01,196 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.7.3-py3-none-any.whl#sha256=2a040524fb3f100169ba217feb08e6383466ac11255d28af8456eb81ce3b6bec (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,196 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.7.2-py3-none-any.whl#sha256=21828a2841dad02c1c00096115aa095586dc8291a8cecb0c22ee2f349226b3ed (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.7.1-py3-none-any.whl#sha256=cbd03457f597f585bc1d64424fd28426169a3887581b90d25419fbe2fcf04a71 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.7.0-py3-none-any.whl#sha256=8eaedaf827f39cbeceb85498561289f0d3ec178dbae355b36a71babf8cdb60ab (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.6.2-py3-none-any.whl#sha256=a281400dcff05d8c5325aa28e48ee82ac635f71f18ad07a1d8f2239e53053caf (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.6.1-py3-none-any.whl#sha256=02483a01ad272731467c6a1ec2e598db55fff4d3b220e55531d65b4dbbc45c8c (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.6.0-py3-none-any.whl#sha256=53bed781c090241b0646b35d38ccfc1fc8b01a00c7e164c8d0efaa20aedf1a68 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.6.0a0-py3-none-any.whl#sha256=967f4e93c409e78e0804ae584c2cdee2b8a5a2a4a19c719cbb56c22fdefb96a1 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,197 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.5.1-py3-none-any.whl#sha256=adadb15fb95437b8aa445ad488ed159f8234ded4346696175449c532384b539f (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.5.1a0-py3-none-any.whl#sha256=a52542c89d1a7a0fc321906b26a4dd42565047099063019ed690a8450c42e54a (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.5.0-py3-none-any.whl#sha256=52a911611f5d80acdb091df9ac8db0bdd44b77a7bd563bb8fd2ccfdcb9213a20 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.5.0a0-py3-none-any.whl#sha256=d570163c7029fc60c523ad5b225774a9622536b57f08dd5d4c391530d4f2188d (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.3.2a0-py3-none-any.whl#sha256=c622655cea50f18508ce6830f4f4775bdf1008a83ca168d6ea1cb576ccfc32a1 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.3-py3-none-any.whl#sha256=9d1f667cbe5f8cb1376ee7ca89763d691b11d20fb11348a84e25ca31e2fa9dd3 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.3a0-py3-none-any.whl#sha256=3f6cfda8101ae11440f5416df9056a109d43edf85bb04d21acf4b516c931f0d8 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.2-py3-none-any.whl#sha256=3da544c8dbe1554efc330e34bfc4916660581d2dad83b32cecf963c08dbf6067 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,198 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.2a0-py3-none-any.whl#sha256=de54eff144081067f01c83de23981303e9d04c00f2ac9ef5e156fc03021ac909 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,199 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.1-py3-none-any.whl#sha256=028f0680f5fdc98b537e1b0fcc5ca0f21631a3d5a532ef7e531ee6c905267754 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,199 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.1a0-py3-none-any.whl#sha256=2e354a310e5c511630b851b43d2d7a99ab723911f111ec643ec327798f1af45d (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,199 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.0-py3-none-any.whl#sha256=af94713a499bd2aa542914d7de4c2e6a3bf5ba4b6c69467962e92e43b17c7bbb (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.2.0a1-py3-none-any.whl#sha256=d85713e49bbe28aba61e6ece58049327e2ed591ab836a3dee332f7492440f60c (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.1.5-py3-none-any.whl#sha256=8f8b6261f20a0fd4acd119cb9292de2a1592aca4205d52e5bf2b869888d1c34b (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.1.4-py3-none-any.whl#sha256=95ecf6751cac2e62cafedee8c7fd36395aa3d06683b465f05f38fc63217c76ec (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.1.3-py3-none-any.whl#sha256=aa5a1ad050f416a356a275ff7c1edf434f2536ecaedf39868c17e6e03612f80c (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.1.2-py3-none-any.whl#sha256=c19ce7dd24737098ed21721c2119fcf05495d6c6f1f28ce34bbe4e5381a1cb6d (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.1.0-py3-none-any.whl#sha256=d8530f0cab49e0a617c041c69b5ff3072e12bdf71c5791223aa6840bb03c563a (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,200 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.8-py3-none-any.whl#sha256=e9789f86f9f4fdcf93e943b22612c247b9799881bab9917132d5b31213115818 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.7-py3-none-any.whl#sha256=d67d2643174f008c4147a21f3d48f5ea6e0c8f6d24cf04f8e56c9d41c7ad3a11 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.5-py3-none-any.whl#sha256=dba97dc16615c6084af661cdd650c990dc6f5e801b977d586b3984fbf9cd9cc0 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.4-py3-none-any.whl#sha256=f4296580ddbea57bc95225cf1970b24bd6399bbe45db8e332e7b2526154213d2 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.3-py3-none-any.whl#sha256=7627466cf3e20b953515974d554131dfc7328da352874e47149686dfb162947a (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: No binaries permitted for ont-bonito: https://archive1.piwheels.org/simple/ont-bonito/ont_bonito-0.0.1-py3-none-any.whl#sha256=921810adb533b8964600c2600af50dba5338d8585fc4dfdaa32b482a3585bd20 (from https://www.piwheels.org/simple/ont-bonito/) 2025-09-10T14:37:01,201 Skipping link: not a file: https://www.piwheels.org/simple/ont-bonito/ 2025-09-10T14:37:01,201 Skipping link: not a file: https://pypi.org/simple/ont-bonito/ 2025-09-10T14:37:01,228 Given no hashes to check 1 links for project 'ont-bonito': discarding no candidates 2025-09-10T14:37:01,229 Collecting ont-bonito==0.5.3 2025-09-10T14:37:01,231 Created temporary directory: /tmp/pip-unpack-q7o01hik 2025-09-10T14:37:01,367 Downloading ont-bonito-0.5.3.tar.gz (50 kB) 2025-09-10T14:37:01,428 Added ont-bonito==0.5.3 from https://files.pythonhosted.org/packages/c7/56/99ed87537a1bca4e37db92bc863e5b930911b12c5326da698f2250b0ca78/ont-bonito-0.5.3.tar.gz to build tracker '/tmp/pip-build-tracker-xnhep4rr' 2025-09-10T14:37:01,429 Running setup.py (path:/tmp/pip-wheel-vz7cureh/ont-bonito_4d71f55252184232a74ea4aaef668c3a/setup.py) egg_info for package ont-bonito 2025-09-10T14:37:01,430 Created temporary directory: /tmp/pip-pip-egg-info-qj6e47qm 2025-09-10T14:37:01,430 Preparing metadata (setup.py): started 2025-09-10T14:37:01,430 Running command python setup.py egg_info 2025-09-10T14:37:02,642 Building with CUDA 10.2 2025-09-10T14:37:02,642 running egg_info 2025-09-10T14:37:02,716 creating /tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info 2025-09-10T14:37:02,716 writing /tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/PKG-INFO 2025-09-10T14:37:02,718 writing entry points to /tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/entry_points.txt 2025-09-10T14:37:02,718 writing requirements to /tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/requires.txt 2025-09-10T14:37:02,719 writing top-level names to /tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/top_level.txt 2025-09-10T14:37:02,719 writing manifest file '/tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/SOURCES.txt' 2025-09-10T14:37:02,944 reading manifest file '/tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/SOURCES.txt' 2025-09-10T14:37:02,945 reading manifest template 'MANIFEST.in' 2025-09-10T14:37:02,947 adding license file 'LICENCE.txt' 2025-09-10T14:37:02,950 writing manifest file '/tmp/pip-pip-egg-info-qj6e47qm/ont_bonito.egg-info/SOURCES.txt' 2025-09-10T14:37:03,062 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T14:37:03,067 Source in /tmp/pip-wheel-vz7cureh/ont-bonito_4d71f55252184232a74ea4aaef668c3a has version 0.5.3, which satisfies requirement ont-bonito==0.5.3 from https://files.pythonhosted.org/packages/c7/56/99ed87537a1bca4e37db92bc863e5b930911b12c5326da698f2250b0ca78/ont-bonito-0.5.3.tar.gz 2025-09-10T14:37:03,067 Removed ont-bonito==0.5.3 from https://files.pythonhosted.org/packages/c7/56/99ed87537a1bca4e37db92bc863e5b930911b12c5326da698f2250b0ca78/ont-bonito-0.5.3.tar.gz from build tracker '/tmp/pip-build-tracker-xnhep4rr' 2025-09-10T14:37:03,076 Created temporary directory: /tmp/pip-unpack-m_vs54gc 2025-09-10T14:37:03,076 Created temporary directory: /tmp/pip-unpack-21i211f3 2025-09-10T14:37:03,076 Building wheels for collected packages: ont-bonito 2025-09-10T14:37:03,077 Created temporary directory: /tmp/pip-wheel-1eanfdb9 2025-09-10T14:37:03,078 DEPRECATION: Building 'ont-bonito' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ont-bonito'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T14:37:03,079 Building wheel for ont-bonito (setup.py): started 2025-09-10T14:37:03,079 Destination directory: /tmp/pip-wheel-1eanfdb9 2025-09-10T14:37:03,080 Running command python setup.py bdist_wheel 2025-09-10T14:37:03,585 Building with CUDA 10.2 2025-09-10T14:37:04,141 running bdist_wheel 2025-09-10T14:37:04,497 running build 2025-09-10T14:37:04,497 running build_py 2025-09-10T14:37:04,572 creating build/lib/bonito 2025-09-10T14:37:04,573 copying bonito/util.py -> build/lib/bonito 2025-09-10T14:37:04,573 copying bonito/training.py -> build/lib/bonito 2025-09-10T14:37:04,574 copying bonito/schedule.py -> build/lib/bonito 2025-09-10T14:37:04,574 copying bonito/reader.py -> build/lib/bonito 2025-09-10T14:37:04,575 copying bonito/pod5.py -> build/lib/bonito 2025-09-10T14:37:04,575 copying bonito/nn.py -> build/lib/bonito 2025-09-10T14:37:04,576 copying bonito/multiprocessing.py -> build/lib/bonito 2025-09-10T14:37:04,576 copying bonito/mod_util.py -> build/lib/bonito 2025-09-10T14:37:04,577 copying bonito/io.py -> build/lib/bonito 2025-09-10T14:37:04,577 copying bonito/fast5.py -> build/lib/bonito 2025-09-10T14:37:04,578 copying bonito/data.py -> build/lib/bonito 2025-09-10T14:37:04,578 copying bonito/aligner.py -> build/lib/bonito 2025-09-10T14:37:04,579 copying bonito/__init__.py -> build/lib/bonito 2025-09-10T14:37:04,580 creating build/lib/bonito/ctc 2025-09-10T14:37:04,580 copying bonito/ctc/model.py -> build/lib/bonito/ctc 2025-09-10T14:37:04,581 copying bonito/ctc/basecall.py -> build/lib/bonito/ctc 2025-09-10T14:37:04,581 copying bonito/ctc/__init__.py -> build/lib/bonito/ctc 2025-09-10T14:37:04,582 creating build/lib/bonito/crf 2025-09-10T14:37:04,582 copying bonito/crf/model.py -> build/lib/bonito/crf 2025-09-10T14:37:04,583 copying bonito/crf/basecall.py -> build/lib/bonito/crf 2025-09-10T14:37:04,583 copying bonito/crf/__init__.py -> build/lib/bonito/crf 2025-09-10T14:37:04,584 creating build/lib/bonito/cli 2025-09-10T14:37:04,584 copying bonito/cli/view.py -> build/lib/bonito/cli 2025-09-10T14:37:04,585 copying bonito/cli/train.py -> build/lib/bonito/cli 2025-09-10T14:37:04,585 copying bonito/cli/export.py -> build/lib/bonito/cli 2025-09-10T14:37:04,586 copying bonito/cli/evaluate.py -> build/lib/bonito/cli 2025-09-10T14:37:04,586 copying bonito/cli/duplex.py -> build/lib/bonito/cli 2025-09-10T14:37:04,587 copying bonito/cli/download.py -> build/lib/bonito/cli 2025-09-10T14:37:04,587 copying bonito/cli/convert.py -> build/lib/bonito/cli 2025-09-10T14:37:04,588 copying bonito/cli/basecaller.py -> build/lib/bonito/cli 2025-09-10T14:37:04,588 copying bonito/cli/__init__.py -> build/lib/bonito/cli 2025-09-10T14:37:04,589 running egg_info 2025-09-10T14:37:04,662 writing ont_bonito.egg-info/PKG-INFO 2025-09-10T14:37:04,664 writing entry points to ont_bonito.egg-info/entry_points.txt 2025-09-10T14:37:04,664 writing requirements to ont_bonito.egg-info/requires.txt 2025-09-10T14:37:04,665 writing top-level names to ont_bonito.egg-info/top_level.txt 2025-09-10T14:37:04,741 reading manifest file 'ont_bonito.egg-info/SOURCES.txt' 2025-09-10T14:37:04,744 reading manifest template 'MANIFEST.in' 2025-09-10T14:37:04,746 adding license file 'LICENCE.txt' 2025-09-10T14:37:04,749 writing manifest file 'ont_bonito.egg-info/SOURCES.txt' 2025-09-10T14:37:04,751 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bonito.data' is absent from the `packages` configuration. 2025-09-10T14:37:04,751 !! 2025-09-10T14:37:04,751 ******************************************************************************** 2025-09-10T14:37:04,751 ############################ 2025-09-10T14:37:04,751 # Package would be ignored # 2025-09-10T14:37:04,751 ############################ 2025-09-10T14:37:04,752 Python recognizes 'bonito.data' as an importable package[^1], 2025-09-10T14:37:04,752 but it is absent from setuptools' `packages` configuration. 2025-09-10T14:37:04,752 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-10T14:37:04,752 package, please make sure that 'bonito.data' is explicitly added 2025-09-10T14:37:04,752 to the `packages` configuration field. 2025-09-10T14:37:04,752 Alternatively, you can also rely on setuptools' discovery methods 2025-09-10T14:37:04,752 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-10T14:37:04,752 instead of `find_packages(...)`/`find:`). 2025-09-10T14:37:04,753 You can read more about "package discovery" on setuptools documentation page: 2025-09-10T14:37:04,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-10T14:37:04,753 If you don't want 'bonito.data' to be distributed and are 2025-09-10T14:37:04,753 already explicitly excluding 'bonito.data' via 2025-09-10T14:37:04,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-10T14:37:04,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-10T14:37:04,753 combination with a more fine grained `package-data` configuration. 2025-09-10T14:37:04,753 You can read more about "package data files" on setuptools documentation page: 2025-09-10T14:37:04,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-10T14:37:04,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-10T14:37:04,754 even if it does not contain any `.py` files. 2025-09-10T14:37:04,754 On the other hand, currently there is no concept of package data 2025-09-10T14:37:04,754 directory, all directories are treated like packages. 2025-09-10T14:37:04,754 ******************************************************************************** 2025-09-10T14:37:04,754 !! 2025-09-10T14:37:04,755 check.warn(importable) 2025-09-10T14:37:04,755 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bonito.models' is absent from the `packages` configuration. 2025-09-10T14:37:04,755 !! 2025-09-10T14:37:04,755 ******************************************************************************** 2025-09-10T14:37:04,755 ############################ 2025-09-10T14:37:04,755 # Package would be ignored # 2025-09-10T14:37:04,755 ############################ 2025-09-10T14:37:04,755 Python recognizes 'bonito.models' as an importable package[^1], 2025-09-10T14:37:04,755 but it is absent from setuptools' `packages` configuration. 2025-09-10T14:37:04,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-10T14:37:04,756 package, please make sure that 'bonito.models' is explicitly added 2025-09-10T14:37:04,756 to the `packages` configuration field. 2025-09-10T14:37:04,756 Alternatively, you can also rely on setuptools' discovery methods 2025-09-10T14:37:04,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-10T14:37:04,756 instead of `find_packages(...)`/`find:`). 2025-09-10T14:37:04,756 You can read more about "package discovery" on setuptools documentation page: 2025-09-10T14:37:04,756 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-10T14:37:04,757 If you don't want 'bonito.models' to be distributed and are 2025-09-10T14:37:04,757 already explicitly excluding 'bonito.models' via 2025-09-10T14:37:04,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-10T14:37:04,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-10T14:37:04,757 combination with a more fine grained `package-data` configuration. 2025-09-10T14:37:04,757 You can read more about "package data files" on setuptools documentation page: 2025-09-10T14:37:04,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-10T14:37:04,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-10T14:37:04,758 even if it does not contain any `.py` files. 2025-09-10T14:37:04,758 On the other hand, currently there is no concept of package data 2025-09-10T14:37:04,758 directory, all directories are treated like packages. 2025-09-10T14:37:04,758 ******************************************************************************** 2025-09-10T14:37:04,758 !! 2025-09-10T14:37:04,758 check.warn(importable) 2025-09-10T14:37:04,758 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bonito.models.configs' is absent from the `packages` configuration. 2025-09-10T14:37:04,758 !! 2025-09-10T14:37:04,759 ******************************************************************************** 2025-09-10T14:37:04,759 ############################ 2025-09-10T14:37:04,759 # Package would be ignored # 2025-09-10T14:37:04,759 ############################ 2025-09-10T14:37:04,759 Python recognizes 'bonito.models.configs' as an importable package[^1], 2025-09-10T14:37:04,759 but it is absent from setuptools' `packages` configuration. 2025-09-10T14:37:04,759 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-10T14:37:04,759 package, please make sure that 'bonito.models.configs' is explicitly added 2025-09-10T14:37:04,759 to the `packages` configuration field. 2025-09-10T14:37:04,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-10T14:37:04,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-10T14:37:04,760 instead of `find_packages(...)`/`find:`). 2025-09-10T14:37:04,760 You can read more about "package discovery" on setuptools documentation page: 2025-09-10T14:37:04,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-10T14:37:04,760 If you don't want 'bonito.models.configs' to be distributed and are 2025-09-10T14:37:04,761 already explicitly excluding 'bonito.models.configs' via 2025-09-10T14:37:04,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-10T14:37:04,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-10T14:37:04,761 combination with a more fine grained `package-data` configuration. 2025-09-10T14:37:04,761 You can read more about "package data files" on setuptools documentation page: 2025-09-10T14:37:04,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-10T14:37:04,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-10T14:37:04,762 even if it does not contain any `.py` files. 2025-09-10T14:37:04,762 On the other hand, currently there is no concept of package data 2025-09-10T14:37:04,762 directory, all directories are treated like packages. 2025-09-10T14:37:04,762 ******************************************************************************** 2025-09-10T14:37:04,762 !! 2025-09-10T14:37:04,762 check.warn(importable) 2025-09-10T14:37:04,762 creating build/lib/bonito/data 2025-09-10T14:37:04,762 copying bonito/data/README.md -> build/lib/bonito/data 2025-09-10T14:37:04,762 creating build/lib/bonito/models 2025-09-10T14:37:04,763 copying bonito/models/README.md -> build/lib/bonito/models 2025-09-10T14:37:04,763 creating build/lib/bonito/models/configs 2025-09-10T14:37:04,763 copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs 2025-09-10T14:37:04,763 copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs 2025-09-10T14:37:04,763 copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs 2025-09-10T14:37:04,830 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T14:37:04,830 !! 2025-09-10T14:37:04,830 ******************************************************************************** 2025-09-10T14:37:04,830 Please avoid running ``setup.py`` directly. 2025-09-10T14:37:04,830 Instead, use pypa/build, pypa/installer or other 2025-09-10T14:37:04,830 standards-based tools. 2025-09-10T14:37:04,831 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T14:37:04,831 or your builds will no longer be supported. 2025-09-10T14:37:04,831 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T14:37:04,831 ******************************************************************************** 2025-09-10T14:37:04,831 !! 2025-09-10T14:37:04,831 self.initialize_options() 2025-09-10T14:37:04,904 installing to build/bdist.linux-armv7l/wheel 2025-09-10T14:37:04,905 running install 2025-09-10T14:37:04,928 running install_lib 2025-09-10T14:37:05,000 creating build/bdist.linux-armv7l/wheel 2025-09-10T14:37:05,000 creating build/bdist.linux-armv7l/wheel/bonito 2025-09-10T14:37:05,000 creating build/bdist.linux-armv7l/wheel/bonito/models 2025-09-10T14:37:05,001 creating build/bdist.linux-armv7l/wheel/bonito/models/configs 2025-09-10T14:37:05,001 copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/./bonito/models/configs 2025-09-10T14:37:05,002 copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/./bonito/models/configs 2025-09-10T14:37:05,002 copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/./bonito/models/configs 2025-09-10T14:37:05,002 copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/./bonito/models 2025-09-10T14:37:05,003 creating build/bdist.linux-armv7l/wheel/bonito/data 2025-09-10T14:37:05,003 copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/./bonito/data 2025-09-10T14:37:05,004 creating build/bdist.linux-armv7l/wheel/bonito/cli 2025-09-10T14:37:05,004 copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,004 copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,005 copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,005 copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,005 copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,006 copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,006 copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,007 copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,007 copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/./bonito/cli 2025-09-10T14:37:05,007 creating build/bdist.linux-armv7l/wheel/bonito/crf 2025-09-10T14:37:05,008 copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/./bonito/crf 2025-09-10T14:37:05,008 copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/./bonito/crf 2025-09-10T14:37:05,008 copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/./bonito/crf 2025-09-10T14:37:05,009 creating build/bdist.linux-armv7l/wheel/bonito/ctc 2025-09-10T14:37:05,009 copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/./bonito/ctc 2025-09-10T14:37:05,010 copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/./bonito/ctc 2025-09-10T14:37:05,010 copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/./bonito/ctc 2025-09-10T14:37:05,010 copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,011 copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,011 copying build/lib/bonito/data.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,011 copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,012 copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,012 copying build/lib/bonito/mod_util.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,013 copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,013 copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,013 copying build/lib/bonito/pod5.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,014 copying build/lib/bonito/reader.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,014 copying build/lib/bonito/schedule.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,014 copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,015 copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/./bonito 2025-09-10T14:37:05,015 running install_egg_info 2025-09-10T14:37:05,090 Copying ont_bonito.egg-info to build/bdist.linux-armv7l/wheel/./ont_bonito-0.5.3-py3.13.egg-info 2025-09-10T14:37:05,092 running install_scripts 2025-09-10T14:37:05,093 error: [Errno 2] No such file or directory: 'build/bdist.linux-armv7l/wheel/ont_bonito-0.5.3.dist-info/dependency_links.txt' 2025-09-10T14:37:05,208 ERROR: python setup.py bdist_wheel exited with 1 2025-09-10T14:37:05,220 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-10T14:37:05,220 exec(compile('"'"''"'"''"'"' 2025-09-10T14:37:05,220 # This is -- a caller that pip uses to run setup.py 2025-09-10T14:37:05,220 # 2025-09-10T14:37:05,220 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-10T14:37:05,220 # import from `distutils.core` to work with newer packaging standards. 2025-09-10T14:37:05,220 # - It provides a clear error message when setuptools is not installed. 2025-09-10T14:37:05,220 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-10T14:37:05,220 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-10T14:37:05,220 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-10T14:37:05,220 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-10T14:37:05,220 import os, sys, tokenize, traceback 2025-09-10T14:37:05,220 2025-09-10T14:37:05,220 try: 2025-09-10T14:37:05,220 import setuptools 2025-09-10T14:37:05,220 except ImportError: 2025-09-10T14:37:05,220 print( 2025-09-10T14:37:05,220 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-10T14:37:05,220 "the build environment with exception:", 2025-09-10T14:37:05,220 file=sys.stderr, 2025-09-10T14:37:05,220 ) 2025-09-10T14:37:05,220 traceback.print_exc() 2025-09-10T14:37:05,220 sys.exit(1) 2025-09-10T14:37:05,220 2025-09-10T14:37:05,220 __file__ = %r 2025-09-10T14:37:05,220 sys.argv[0] = __file__ 2025-09-10T14:37:05,220 2025-09-10T14:37:05,220 if os.path.exists(__file__): 2025-09-10T14:37:05,220 filename = __file__ 2025-09-10T14:37:05,220 with tokenize.open(__file__) as f: 2025-09-10T14:37:05,220 setup_py_code = f.read() 2025-09-10T14:37:05,220 else: 2025-09-10T14:37:05,220 filename = "" 2025-09-10T14:37:05,220 setup_py_code = "from setuptools import setup; setup()" 2025-09-10T14:37:05,220 2025-09-10T14:37:05,220 exec(compile(setup_py_code, filename, "exec")) 2025-09-10T14:37:05,220 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-vz7cureh/ont-bonito_4d71f55252184232a74ea4aaef668c3a/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-1eanfdb9[/] 2025-09-10T14:37:05,220 [bold magenta]cwd[/]: /tmp/pip-wheel-vz7cureh/ont-bonito_4d71f55252184232a74ea4aaef668c3a/ 2025-09-10T14:37:05,220 Building wheel for ont-bonito (setup.py): finished with status 'error' 2025-09-10T14:37:05,221 ERROR: Failed building wheel for ont-bonito 2025-09-10T14:37:05,222 Running setup.py clean for ont-bonito 2025-09-10T14:37:05,222 Running command python setup.py clean 2025-09-10T14:37:05,738 Building with CUDA 10.2 2025-09-10T14:37:06,372 running clean 2025-09-10T14:37:06,518 removing 'build/lib' (and everything under it) 2025-09-10T14:37:06,520 removing 'build/bdist.linux-armv7l' (and everything under it) 2025-09-10T14:37:06,522 'build/scripts-3.13' does not exist -- can't clean it 2025-09-10T14:37:06,522 removing 'build' 2025-09-10T14:37:06,635 Failed to build ont-bonito 2025-09-10T14:37:06,636 ERROR: Failed to build one or more wheels 2025-09-10T14:37:06,637 Exception information: 2025-09-10T14:37:06,637 Traceback (most recent call last): 2025-09-10T14:37:06,637 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-10T14:37:06,637 status = _inner_run() 2025-09-10T14:37:06,637 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-10T14:37:06,637 return self.run(options, args) 2025-09-10T14:37:06,637 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-10T14:37:06,637 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-10T14:37:06,637 return func(self, options, args) 2025-09-10T14:37:06,637 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-10T14:37:06,637 raise CommandError("Failed to build one or more wheels") 2025-09-10T14:37:06,637 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-10T14:37:06,641 Removed build tracker: '/tmp/pip-build-tracker-xnhep4rr'