2025-09-10T14:37:09,710 Created temporary directory: /tmp/pip-build-tracker-ve74z323 2025-09-10T14:37:09,710 Initialized build tracking at /tmp/pip-build-tracker-ve74z323 2025-09-10T14:37:09,710 Created build tracker: /tmp/pip-build-tracker-ve74z323 2025-09-10T14:37:09,711 Entered build tracker: /tmp/pip-build-tracker-ve74z323 2025-09-10T14:37:09,711 Created temporary directory: /tmp/pip-wheel-rzzkjwt1 2025-09-10T14:37:09,714 Created temporary directory: /tmp/pip-ephem-wheel-cache-zshte3lm 2025-09-10T14:37:09,770 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-10T14:37:09,772 2 location(s) to search for versions of collapse-gtdb-tree: 2025-09-10T14:37:09,772 * https://pypi.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,772 * https://www.piwheels.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,773 Fetching project page and analyzing links: https://pypi.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,773 Getting page https://pypi.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,774 Found index url https://pypi.org/simple/ 2025-09-10T14:37:09,922 Fetched page https://pypi.org/simple/collapse-gtdb-tree/ as application/vnd.pypi.simple.v1+json 2025-09-10T14:37:09,925 Found link https://files.pythonhosted.org/packages/f8/9f/6ac87c0c85832d3160d1e0e9869708864132309a3bbad81a5f9d6bc2d09a/collapse-gtdb-tree-0.0.1.tar.gz (from https://pypi.org/simple/collapse-gtdb-tree/), version: 0.0.1 2025-09-10T14:37:09,925 Skipping link: No binaries permitted for collapse-gtdb-tree: https://files.pythonhosted.org/packages/5c/2b/6f5785edb4f506dcde2ff926cb0347ac1895ff44e562880c6a4f4afcfad5/collapse_gtdb_tree-0.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/collapse-gtdb-tree/) 2025-09-10T14:37:09,926 Found link https://files.pythonhosted.org/packages/b5/bf/11a6614351295addb234f72338a311b6b5ed8ccd26d87c2a3c09a3d3e44a/collapse-gtdb-tree-0.0.2.tar.gz (from https://pypi.org/simple/collapse-gtdb-tree/), version: 0.0.2 2025-09-10T14:37:09,926 Skipping link: No binaries permitted for collapse-gtdb-tree: https://files.pythonhosted.org/packages/16/a5/3da4f2371428f13b20bc4af676f4aad210bea35ba55586c9855c1f7da972/collapse_gtdb_tree-0.0.2-py2.py3-none-any.whl (from https://pypi.org/simple/collapse-gtdb-tree/) 2025-09-10T14:37:09,927 Found link https://files.pythonhosted.org/packages/02/e2/4c6c2fb892d4752c07c7ab710f52e771fc8942269f4ef5b9ae21127ac487/collapse-gtdb-tree-0.0.3.tar.gz (from https://pypi.org/simple/collapse-gtdb-tree/), version: 0.0.3 2025-09-10T14:37:09,927 Skipping link: No binaries permitted for collapse-gtdb-tree: https://files.pythonhosted.org/packages/32/c8/5beb7757f69a30996e6b530116961765ea92138bb61c9ee6a93c8be951f5/collapse_gtdb_tree-0.0.3-py2.py3-none-any.whl (from https://pypi.org/simple/collapse-gtdb-tree/) 2025-09-10T14:37:09,928 Fetching project page and analyzing links: https://www.piwheels.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,928 Getting page https://www.piwheels.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:09,930 Found index url https://www.piwheels.org/simple/ 2025-09-10T14:37:10,026 Fetched page https://www.piwheels.org/simple/collapse-gtdb-tree/ as text/html 2025-09-10T14:37:10,027 Skipping link: No binaries permitted for collapse-gtdb-tree: https://archive1.piwheels.org/simple/collapse-gtdb-tree/collapse_gtdb_tree-0.0.3-py2.py3-none-any.whl#sha256=39efa9678ff97d62c026b15b8150c0075804978a9c7a45dd8825e658d9309913 (from https://www.piwheels.org/simple/collapse-gtdb-tree/) 2025-09-10T14:37:10,027 Skipping link: No binaries permitted for collapse-gtdb-tree: https://archive1.piwheels.org/simple/collapse-gtdb-tree/collapse_gtdb_tree-0.0.1-py2.py3-none-any.whl#sha256=94ddc47ef217317afd640b1257141bbedba8378be45eba05df6b17af9c522ece (from https://www.piwheels.org/simple/collapse-gtdb-tree/) 2025-09-10T14:37:10,027 Skipping link: not a file: https://www.piwheels.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:10,027 Skipping link: not a file: https://pypi.org/simple/collapse-gtdb-tree/ 2025-09-10T14:37:10,049 Given no hashes to check 1 links for project 'collapse-gtdb-tree': discarding no candidates 2025-09-10T14:37:10,050 Collecting collapse-gtdb-tree==0.0.2 2025-09-10T14:37:10,051 Created temporary directory: /tmp/pip-unpack-np03yiu7 2025-09-10T14:37:10,194 Downloading collapse-gtdb-tree-0.0.2.tar.gz (6.3 kB) 2025-09-10T14:37:10,222 Added collapse-gtdb-tree==0.0.2 from https://files.pythonhosted.org/packages/b5/bf/11a6614351295addb234f72338a311b6b5ed8ccd26d87c2a3c09a3d3e44a/collapse-gtdb-tree-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-ve74z323' 2025-09-10T14:37:10,223 Running setup.py (path:/tmp/pip-wheel-rzzkjwt1/collapse-gtdb-tree_767cdbc2cd674ebfb5d0db529014e1ab/setup.py) egg_info for package collapse-gtdb-tree 2025-09-10T14:37:10,223 Created temporary directory: /tmp/pip-pip-egg-info-10q94naz 2025-09-10T14:37:10,224 Preparing metadata (setup.py): started 2025-09-10T14:37:10,225 Running command python setup.py egg_info 2025-09-10T14:37:11,100 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T14:37:11,100 !! 2025-09-10T14:37:11,100 ******************************************************************************** 2025-09-10T14:37:11,100 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T14:37:11,100 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T14:37:11,101 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T14:37:11,101 or your builds will no longer be supported. 2025-09-10T14:37:11,101 ******************************************************************************** 2025-09-10T14:37:11,101 !! 2025-09-10T14:37:11,101 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T14:37:11,458 running egg_info 2025-09-10T14:37:11,531 creating /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info 2025-09-10T14:37:11,532 writing /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/PKG-INFO 2025-09-10T14:37:11,533 writing dependency_links to /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/dependency_links.txt 2025-09-10T14:37:11,533 writing entry points to /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/entry_points.txt 2025-09-10T14:37:11,534 writing requirements to /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/requires.txt 2025-09-10T14:37:11,534 writing top-level names to /tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/top_level.txt 2025-09-10T14:37:11,534 writing manifest file '/tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/SOURCES.txt' 2025-09-10T14:37:11,683 reading manifest file '/tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/SOURCES.txt' 2025-09-10T14:37:11,684 adding license file 'LICENSE' 2025-09-10T14:37:11,686 writing manifest file '/tmp/pip-pip-egg-info-10q94naz/collapse_gtdb_tree.egg-info/SOURCES.txt' 2025-09-10T14:37:11,805 Preparing metadata (setup.py): finished with status 'done' 2025-09-10T14:37:11,810 Source in /tmp/pip-wheel-rzzkjwt1/collapse-gtdb-tree_767cdbc2cd674ebfb5d0db529014e1ab has version 0.0.2, which satisfies requirement collapse-gtdb-tree==0.0.2 from https://files.pythonhosted.org/packages/b5/bf/11a6614351295addb234f72338a311b6b5ed8ccd26d87c2a3c09a3d3e44a/collapse-gtdb-tree-0.0.2.tar.gz 2025-09-10T14:37:11,810 Removed collapse-gtdb-tree==0.0.2 from https://files.pythonhosted.org/packages/b5/bf/11a6614351295addb234f72338a311b6b5ed8ccd26d87c2a3c09a3d3e44a/collapse-gtdb-tree-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-ve74z323' 2025-09-10T14:37:11,814 Created temporary directory: /tmp/pip-unpack-s_cttw_w 2025-09-10T14:37:11,814 Created temporary directory: /tmp/pip-unpack-ghl_v1ue 2025-09-10T14:37:11,814 Building wheels for collected packages: collapse-gtdb-tree 2025-09-10T14:37:11,816 Created temporary directory: /tmp/pip-wheel-b8vj_uwv 2025-09-10T14:37:11,816 DEPRECATION: Building 'collapse-gtdb-tree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'collapse-gtdb-tree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-10T14:37:11,817 Building wheel for collapse-gtdb-tree (setup.py): started 2025-09-10T14:37:11,818 Destination directory: /tmp/pip-wheel-b8vj_uwv 2025-09-10T14:37:11,818 Running command python setup.py bdist_wheel 2025-09-10T14:37:12,689 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-10T14:37:12,689 !! 2025-09-10T14:37:12,690 ******************************************************************************** 2025-09-10T14:37:12,690 Requirements should be satisfied by a PEP 517 installer. 2025-09-10T14:37:12,690 If you are using pip, you can try `pip install --use-pep517`. 2025-09-10T14:37:12,690 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T14:37:12,690 or your builds will no longer be supported. 2025-09-10T14:37:12,690 ******************************************************************************** 2025-09-10T14:37:12,690 !! 2025-09-10T14:37:12,691 dist.fetch_build_eggs(dist.setup_requires) 2025-09-10T14:37:13,044 running bdist_wheel 2025-09-10T14:37:13,191 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-09-10T14:37:13,191 !! 2025-09-10T14:37:13,192 ******************************************************************************** 2025-09-10T14:37:13,192 With Python 2.7 end-of-life, support for building universal wheels 2025-09-10T14:37:13,192 (i.e., wheels that support both Python 2 and Python 3) 2025-09-10T14:37:13,192 is being obviated. 2025-09-10T14:37:13,192 Please discontinue using this option, or if you still need it, 2025-09-10T14:37:13,192 file an issue with pypa/setuptools describing your use case. 2025-09-10T14:37:13,192 This deprecation is overdue, please update your project and remove deprecated 2025-09-10T14:37:13,192 calls to avoid build errors in the future. 2025-09-10T14:37:13,192 ******************************************************************************** 2025-09-10T14:37:13,193 !! 2025-09-10T14:37:13,193 self.finalize_options() 2025-09-10T14:37:13,265 running build 2025-09-10T14:37:13,266 running build_py 2025-09-10T14:37:13,272 creating build/lib/collapse_gtdb_tree 2025-09-10T14:37:13,273 copying collapse_gtdb_tree/utils.py -> build/lib/collapse_gtdb_tree 2025-09-10T14:37:13,273 copying collapse_gtdb_tree/_version.py -> build/lib/collapse_gtdb_tree 2025-09-10T14:37:13,274 copying collapse_gtdb_tree/__main__.py -> build/lib/collapse_gtdb_tree 2025-09-10T14:37:13,274 copying collapse_gtdb_tree/__init__.py -> build/lib/collapse_gtdb_tree 2025-09-10T14:37:13,275 UPDATING build/lib/collapse_gtdb_tree/_version.py 2025-09-10T14:37:13,276 set build/lib/collapse_gtdb_tree/_version.py to '0.0.2' 2025-09-10T14:37:13,351 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T14:37:13,351 !! 2025-09-10T14:37:13,351 ******************************************************************************** 2025-09-10T14:37:13,351 Please avoid running ``setup.py`` directly. 2025-09-10T14:37:13,351 Instead, use pypa/build, pypa/installer or other 2025-09-10T14:37:13,351 standards-based tools. 2025-09-10T14:37:13,351 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T14:37:13,352 or your builds will no longer be supported. 2025-09-10T14:37:13,352 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T14:37:13,352 ******************************************************************************** 2025-09-10T14:37:13,352 !! 2025-09-10T14:37:13,352 self.initialize_options() 2025-09-10T14:37:13,423 installing to build/bdist.linux-armv7l/wheel 2025-09-10T14:37:13,423 running install 2025-09-10T14:37:13,446 running install_lib 2025-09-10T14:37:13,519 creating build/bdist.linux-armv7l/wheel 2025-09-10T14:37:13,519 creating build/bdist.linux-armv7l/wheel/collapse_gtdb_tree 2025-09-10T14:37:13,519 copying build/lib/collapse_gtdb_tree/__init__.py -> build/bdist.linux-armv7l/wheel/./collapse_gtdb_tree 2025-09-10T14:37:13,520 copying build/lib/collapse_gtdb_tree/__main__.py -> build/bdist.linux-armv7l/wheel/./collapse_gtdb_tree 2025-09-10T14:37:13,520 copying build/lib/collapse_gtdb_tree/_version.py -> build/bdist.linux-armv7l/wheel/./collapse_gtdb_tree 2025-09-10T14:37:13,521 copying build/lib/collapse_gtdb_tree/utils.py -> build/bdist.linux-armv7l/wheel/./collapse_gtdb_tree 2025-09-10T14:37:13,521 running install_egg_info 2025-09-10T14:37:13,597 running egg_info 2025-09-10T14:37:13,670 writing collapse_gtdb_tree.egg-info/PKG-INFO 2025-09-10T14:37:13,671 writing dependency_links to collapse_gtdb_tree.egg-info/dependency_links.txt 2025-09-10T14:37:13,672 writing entry points to collapse_gtdb_tree.egg-info/entry_points.txt 2025-09-10T14:37:13,672 writing requirements to collapse_gtdb_tree.egg-info/requires.txt 2025-09-10T14:37:13,672 writing top-level names to collapse_gtdb_tree.egg-info/top_level.txt 2025-09-10T14:37:13,748 reading manifest file 'collapse_gtdb_tree.egg-info/SOURCES.txt' 2025-09-10T14:37:13,749 adding license file 'LICENSE' 2025-09-10T14:37:13,752 writing manifest file 'collapse_gtdb_tree.egg-info/SOURCES.txt' 2025-09-10T14:37:13,755 Copying collapse_gtdb_tree.egg-info to build/bdist.linux-armv7l/wheel/./collapse_gtdb_tree-0.0.2-py3.13.egg-info 2025-09-10T14:37:13,757 running install_scripts 2025-09-10T14:37:13,760 creating build/bdist.linux-armv7l/wheel/collapse_gtdb_tree-0.0.2.dist-info/WHEEL 2025-09-10T14:37:13,761 creating '/tmp/pip-wheel-b8vj_uwv/collapse_gtdb_tree-0.0.2-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T14:37:13,762 adding 'collapse_gtdb_tree/__init__.py' 2025-09-10T14:37:13,763 adding 'collapse_gtdb_tree/__main__.py' 2025-09-10T14:37:13,764 adding 'collapse_gtdb_tree/_version.py' 2025-09-10T14:37:13,764 adding 'collapse_gtdb_tree/utils.py' 2025-09-10T14:37:13,765 adding 'collapse_gtdb_tree-0.0.2.dist-info/licenses/LICENSE' 2025-09-10T14:37:13,766 adding 'collapse_gtdb_tree-0.0.2.dist-info/METADATA' 2025-09-10T14:37:13,766 adding 'collapse_gtdb_tree-0.0.2.dist-info/WHEEL' 2025-09-10T14:37:13,767 adding 'collapse_gtdb_tree-0.0.2.dist-info/entry_points.txt' 2025-09-10T14:37:13,767 adding 'collapse_gtdb_tree-0.0.2.dist-info/top_level.txt' 2025-09-10T14:37:13,768 adding 'collapse_gtdb_tree-0.0.2.dist-info/RECORD' 2025-09-10T14:37:13,768 removing build/bdist.linux-armv7l/wheel 2025-09-10T14:37:13,886 Building wheel for collapse-gtdb-tree (setup.py): finished with status 'done' 2025-09-10T14:37:13,887 Created wheel for collapse-gtdb-tree: filename=collapse_gtdb_tree-0.0.2-py2.py3-none-any.whl size=6825 sha256=90423ae72a9262d16898a6b78b2b99746817c642a1e7be3df828e6dfb3a66bb0 2025-09-10T14:37:13,888 Stored in directory: /tmp/pip-ephem-wheel-cache-zshte3lm/wheels/8c/5a/63/c108e8bc21667db7b9f70c6414e8b4e73c5ac5747d34775166 2025-09-10T14:37:13,895 Successfully built collapse-gtdb-tree 2025-09-10T14:37:13,896 Removed build tracker: '/tmp/pip-build-tracker-ve74z323'