2025-09-10T20:40:57,098 Created temporary directory: /tmp/pip-ephem-wheel-cache-15cal01s 2025-09-10T20:40:57,100 Created temporary directory: /tmp/pip-req-tracker-t2752cvl 2025-09-10T20:40:57,101 Initialized build tracking at /tmp/pip-req-tracker-t2752cvl 2025-09-10T20:40:57,101 Created build tracker: /tmp/pip-req-tracker-t2752cvl 2025-09-10T20:40:57,101 Entered build tracker: /tmp/pip-req-tracker-t2752cvl 2025-09-10T20:40:57,102 Created temporary directory: /tmp/pip-wheel-s0fqx5l5 2025-09-10T20:40:57,123 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-09-10T20:40:57,125 2 location(s) to search for versions of kssdutils: 2025-09-10T20:40:57,125 * https://pypi.org/simple/kssdutils/ 2025-09-10T20:40:57,125 * https://www.piwheels.org/simple/kssdutils/ 2025-09-10T20:40:57,126 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-09-10T20:40:57,126 Getting page https://pypi.org/simple/kssdutils/ 2025-09-10T20:40:57,127 Found index url https://pypi.org/simple 2025-09-10T20:40:57,132 Starting new HTTPS connection (1): pypi.org:443 2025-09-10T20:40:57,174 https://pypi.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1354 2025-09-10T20:40:57,245 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz#sha256=8d679d5f963a767a4df5ded96f9aa2cd10524d23f7d418797ae62baaca759e1f (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-09-10T20:40:57,246 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz#sha256=cc08f86ac8152ac9a7f506f8d2f4808dca0754cebd06565f3de1cb7e639a310c (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-09-10T20:40:57,246 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz#sha256=384edc154817d0cbea825d78f0d58bee3fbe1811532e1f8ea77b8b7cb1e7fc84 (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-09-10T20:40:57,246 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz#sha256=412ff6a0cfd2bd03e01e83c8cb7cb663679b530682d69aad8733e696d8a2fae7 (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-09-10T20:40:57,246 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz#sha256=34a917037f0205223ec2e2b6a87da9381a3c5224a109a2ca92f010b72824f284 (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-09-10T20:40:57,247 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz#sha256=9e8e97befc6bcdf3bc904d558ac9e6a0bddf4458096aaaa5f0ef1ab344223ed5 (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-09-10T20:40:57,247 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz#sha256=f5862cfef7ea29d8c668475cdedf83af1b6c352d24827694a07af0fc82597032 (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-09-10T20:40:57,247 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz#sha256=07328ca56be9994670fea19e700d7c9b8f67c317bc8731c48939dd54e1cba32e (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-09-10T20:40:57,248 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-09-10T20:40:57,248 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz#sha256=50dd2c513e94169e8fff9f28ff60e4bc059f409b49c3cff387d3ef49564f3c82 (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-09-10T20:40:57,248 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz#sha256=4f833f05e3fbed227f6cba1b2db89b12a0dbe7fc4634fa9c89c20446c3efab1b (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-09-10T20:40:57,248 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz#sha256=416f323a70d8f556b186cc63e8f0b2e4b0b2ce9d3d7f716e04bb2a3f7d08e86c (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-09-10T20:40:57,249 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-09-10T20:40:57,249 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-09-10T20:40:57,250 Found index url https://www.piwheels.org/simple 2025-09-10T20:40:57,252 Starting new HTTPS connection (1): www.piwheels.org:443 2025-09-10T20:40:57,312 https://www.piwheels.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1227 2025-09-10T20:40:57,333 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,334 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,334 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,334 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,335 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,335 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,335 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,335 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,335 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,336 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,336 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,336 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,336 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,337 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,337 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,337 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,337 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,337 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,338 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,338 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,338 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,338 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,338 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,339 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,339 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,339 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,339 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,339 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,340 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,340 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,340 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,340 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,341 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,341 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,341 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,341 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-10T20:40:57,371 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-09-10T20:40:57,401 Collecting kssdutils==1.1.2 2025-09-10T20:40:57,402 Created temporary directory: /tmp/pip-unpack-jlbbrx6x 2025-09-10T20:40:57,406 Starting new HTTPS connection (1): files.pythonhosted.org:443 2025-09-10T20:40:57,515 https://files.pythonhosted.org:443 "GET /packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz HTTP/1.1" 200 47583 2025-09-10T20:40:57,516 Downloading kssdutils-1.1.2.tar.gz (47 kB) 2025-09-10T20:40:57,593 Added kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d to build tracker '/tmp/pip-req-tracker-t2752cvl' 2025-09-10T20:40:57,594 Running setup.py (path:/tmp/pip-wheel-s0fqx5l5/kssdutils_860aec70b0df4152ae9dca2ded61508a/setup.py) egg_info for package kssdutils 2025-09-10T20:40:57,595 Created temporary directory: /tmp/pip-pip-egg-info-2bqnj9fz 2025-09-10T20:40:57,595 Running command python setup.py egg_info 2025-09-10T20:40:58,540 running egg_info 2025-09-10T20:40:58,568 creating /tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info 2025-09-10T20:40:58,569 writing /tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/PKG-INFO 2025-09-10T20:40:58,573 writing dependency_links to /tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/dependency_links.txt 2025-09-10T20:40:58,575 writing requirements to /tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/requires.txt 2025-09-10T20:40:58,577 writing top-level names to /tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/top_level.txt 2025-09-10T20:40:58,578 writing manifest file '/tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/SOURCES.txt' 2025-09-10T20:40:58,685 reading manifest file '/tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/SOURCES.txt' 2025-09-10T20:40:58,687 reading manifest template 'MANIFEST.in' 2025-09-10T20:40:58,696 writing manifest file '/tmp/pip-pip-egg-info-2bqnj9fz/kssdutils.egg-info/SOURCES.txt' 2025-09-10T20:40:58,786 Source in /tmp/pip-wheel-s0fqx5l5/kssdutils_860aec70b0df4152ae9dca2ded61508a has version 1.1.2, which satisfies requirement kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d 2025-09-10T20:40:58,787 Removed kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d from build tracker '/tmp/pip-req-tracker-t2752cvl' 2025-09-10T20:40:58,795 Created temporary directory: /tmp/pip-unpack-76_zx1rz 2025-09-10T20:40:58,796 Building wheels for collected packages: kssdutils 2025-09-10T20:40:58,800 Created temporary directory: /tmp/pip-wheel-h724yjwq 2025-09-10T20:40:58,800 Building wheel for kssdutils (setup.py): started 2025-09-10T20:40:58,800 Destination directory: /tmp/pip-wheel-h724yjwq 2025-09-10T20:40:58,801 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s0fqx5l5/kssdutils_860aec70b0df4152ae9dca2ded61508a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s0fqx5l5/kssdutils_860aec70b0df4152ae9dca2ded61508a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-h724yjwq 2025-09-10T20:40:59,662 running bdist_wheel 2025-09-10T20:40:59,793 running build 2025-09-10T20:40:59,793 running build_py 2025-09-10T20:40:59,821 creating build/lib.linux-armv7l-cpython-39 2025-09-10T20:40:59,822 copying kssdutils.py -> build/lib.linux-armv7l-cpython-39 2025-09-10T20:40:59,825 running egg_info 2025-09-10T20:40:59,851 writing kssdutils.egg-info/PKG-INFO 2025-09-10T20:40:59,854 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-09-10T20:40:59,856 writing requirements to kssdutils.egg-info/requires.txt 2025-09-10T20:40:59,857 writing top-level names to kssdutils.egg-info/top_level.txt 2025-09-10T20:40:59,886 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-10T20:40:59,889 reading manifest template 'MANIFEST.in' 2025-09-10T20:40:59,899 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-10T20:40:59,901 running build_ext 2025-09-10T20:41:00,340 building 'kssdtool' extension 2025-09-10T20:41:00,342 creating build/temp.linux-armv7l-cpython-39 2025-09-10T20:41:00,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2025-09-10T20:41:00,504 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-10T20:41:00,504 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-10T20:41:00,504 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-10T20:41:00,505 | ^ 2025-09-10T20:41:00,507 co2mco.c: In function ‘co2unitllmco’: 2025-09-10T20:41:00,507 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-10T20:41:00,507 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-10T20:41:00,508 | ^ 2025-09-10T20:41:01,120 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2025-09-10T20:41:01,417 command_composite.c: In function ‘get_species_abundance’: 2025-09-10T20:41:01,417 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-10T20:41:01,417 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-10T20:41:01,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,418 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-10T20:41:01,418 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-10T20:41:01,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,418 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:01,419 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-10T20:41:01,419 | ^ 2025-09-10T20:41:01,419 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-10T20:41:01,419 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-10T20:41:01,420 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,420 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:01,420 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-10T20:41:01,420 | ^ 2025-09-10T20:41:01,421 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-10T20:41:01,421 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-10T20:41:01,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,421 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:01,422 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-10T20:41:01,422 | ^ 2025-09-10T20:41:01,422 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-10T20:41:01,422 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-10T20:41:01,423 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,423 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:01,423 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-10T20:41:01,423 | ^ 2025-09-10T20:41:01,423 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-10T20:41:01,424 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-10T20:41:01,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,424 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:01,424 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-10T20:41:01,424 | ^ 2025-09-10T20:41:01,425 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2025-09-10T20:41:01,425 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-10T20:41:01,425 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,655 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2025-09-10T20:41:01,848 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-10T20:41:01,849 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,849 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,850 | ~~^ 2025-09-10T20:41:01,850 | | 2025-09-10T20:41:01,850 | long unsigned int 2025-09-10T20:41:01,850 | %u 2025-09-10T20:41:01,850 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,850 | ~~~~~~~ 2025-09-10T20:41:01,851 | | 2025-09-10T20:41:01,851 | size_t {aka unsigned int} 2025-09-10T20:41:01,851 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,851 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,851 | ~~^ 2025-09-10T20:41:01,852 | | 2025-09-10T20:41:01,852 | long unsigned int 2025-09-10T20:41:01,852 | %u 2025-09-10T20:41:01,852 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,852 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-10T20:41:01,853 | ~~~~~~~~~ 2025-09-10T20:41:01,853 | | 2025-09-10T20:41:01,853 | size_t {aka unsigned int} 2025-09-10T20:41:01,853 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-10T20:41:01,854 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,854 | ~~^ 2025-09-10T20:41:01,854 | | 2025-09-10T20:41:01,854 | long unsigned int 2025-09-10T20:41:01,854 | %u 2025-09-10T20:41:01,855 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,855 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-10T20:41:01,855 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,855 | | 2025-09-10T20:41:01,855 | unsigned int 2025-09-10T20:41:01,856 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T20:41:01,856 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-10T20:41:01,856 | ^ 2025-09-10T20:41:01,861 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-10T20:41:01,862 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,862 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-10T20:41:01,862 | ~~^ ~~~~~~~ 2025-09-10T20:41:01,862 | | | 2025-09-10T20:41:01,863 | long unsigned int size_t {aka unsigned int} 2025-09-10T20:41:01,863 | %u 2025-09-10T20:41:01,863 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,864 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-10T20:41:01,864 | ~~^ 2025-09-10T20:41:01,864 | | 2025-09-10T20:41:01,864 | long unsigned int 2025-09-10T20:41:01,864 | %u 2025-09-10T20:41:01,864 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-10T20:41:01,865 | ~~~~~~~~~ 2025-09-10T20:41:01,865 | | 2025-09-10T20:41:01,865 | size_t {aka unsigned int} 2025-09-10T20:41:01,865 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-10T20:41:01,865 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-10T20:41:01,866 | ~~^ 2025-09-10T20:41:01,866 | | 2025-09-10T20:41:01,866 | long unsigned int 2025-09-10T20:41:01,866 | %u 2025-09-10T20:41:01,866 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-10T20:41:01,867 865 | (size_t) b * unitsz_distf_mapped); 2025-09-10T20:41:01,867 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,867 | | 2025-09-10T20:41:01,867 | unsigned int 2025-09-10T20:41:01,867 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-10T20:41:01,867 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-10T20:41:01,868 | ^~~~~~~ 2025-09-10T20:41:01,868 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-10T20:41:01,868 809 | struct stat cbd_fcode_stat; 2025-09-10T20:41:01,868 | ^~~~~~~~~~~~~~ 2025-09-10T20:41:01,868 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-10T20:41:01,869 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-10T20:41:01,869 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,869 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-10T20:41:01,869 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-10T20:41:01,869 | ^~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,875 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-10T20:41:01,877 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,877 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,877 | ~~^ 2025-09-10T20:41:01,877 | | 2025-09-10T20:41:01,877 | long unsigned int 2025-09-10T20:41:01,878 | %u 2025-09-10T20:41:01,878 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,878 | ~~~~~~~ 2025-09-10T20:41:01,878 | | 2025-09-10T20:41:01,878 | size_t {aka unsigned int} 2025-09-10T20:41:01,879 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:01,879 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,879 | ~~^ 2025-09-10T20:41:01,879 | | 2025-09-10T20:41:01,879 | long unsigned int 2025-09-10T20:41:01,880 | %u 2025-09-10T20:41:01,880 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,880 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-10T20:41:01,880 | ~~~~~~~~~ 2025-09-10T20:41:01,880 | | 2025-09-10T20:41:01,880 | size_t {aka unsigned int} 2025-09-10T20:41:01,881 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-10T20:41:01,881 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-10T20:41:01,881 | ~~^ 2025-09-10T20:41:01,881 | | 2025-09-10T20:41:01,882 | long unsigned int 2025-09-10T20:41:01,882 | %u 2025-09-10T20:41:01,882 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-10T20:41:01,882 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-10T20:41:01,882 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:01,882 | | 2025-09-10T20:41:01,883 | unsigned int 2025-09-10T20:41:01,883 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,883 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2025-09-10T20:41:01,883 | ^ 2025-09-10T20:41:01,886 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-10T20:41:01,886 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T20:41:01,887 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-10T20:41:01,887 | ^ 2025-09-10T20:41:01,892 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-10T20:41:01,893 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,893 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-10T20:41:01,893 | ^ 2025-09-10T20:41:01,895 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,895 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-10T20:41:01,895 | ^ 2025-09-10T20:41:01,900 command_dist.c: In function ‘dist_print_nobin’: 2025-09-10T20:41:01,901 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,901 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-10T20:41:01,901 | ^ 2025-09-10T20:41:01,903 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,903 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-10T20:41:01,903 | ^ 2025-09-10T20:41:01,904 command_dist.c:1380:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,905 1380 | for (int rid = 0; rid < ref_num; rid++) 2025-09-10T20:41:01,905 | ^ 2025-09-10T20:41:01,905 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-10T20:41:01,906 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-10T20:41:01,906 | ^ 2025-09-10T20:41:02,156 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-10T20:41:02,156 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2025-09-10T20:41:02,156 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-10T20:41:02,156 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:02,157 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-10T20:41:02,157 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-10T20:41:02,157 | ^~~~~~~~~~~~ 2025-09-10T20:41:02,878 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-10T20:41:02,878 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-10T20:41:02,879 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-10T20:41:02,879 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:02,879 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-10T20:41:02,879 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-10T20:41:02,879 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,663 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-10T20:41:03,663 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:03,663 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:03,664 | ^~ ~~~~~~~~~ 2025-09-10T20:41:03,664 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-10T20:41:03,664 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:03,664 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,664 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:03,665 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:03,665 | ^~~~~~~~~~~~~~~ 2025-09-10T20:41:03,665 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-10T20:41:03,665 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:03,665 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,666 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:03,666 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-10T20:41:03,666 | ^~~~~~~~~~~ 2025-09-10T20:41:03,667 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-10T20:41:03,667 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-10T20:41:03,667 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,667 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:03,667 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-10T20:41:03,667 | ^~~~~ 2025-09-10T20:41:03,668 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-10T20:41:03,668 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-10T20:41:03,668 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,875 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-10T20:41:03,875 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:03,875 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:03,876 | ^~ ~~~~~~~~~ 2025-09-10T20:41:03,876 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-10T20:41:03,876 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:03,876 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,877 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:03,877 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:03,877 | ^~~~~~~~~~~~~~~ 2025-09-10T20:41:03,877 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-10T20:41:03,877 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:03,877 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,878 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:03,878 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-10T20:41:03,878 | ^~~~~~~~~~~~~ 2025-09-10T20:41:03,878 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-10T20:41:03,879 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-10T20:41:03,879 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,880 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:03,880 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-10T20:41:03,880 | ^ 2025-09-10T20:41:03,880 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-10T20:41:03,880 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-10T20:41:03,880 | ^~~~~~~~~~ 2025-09-10T20:41:03,881 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-10T20:41:03,881 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-10T20:41:03,881 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:03,881 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:03,882 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-10T20:41:03,882 | ^ 2025-09-10T20:41:03,882 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-10T20:41:03,882 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-10T20:41:03,882 | ^~~~~~~~~~ 2025-09-10T20:41:03,883 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-10T20:41:03,883 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-10T20:41:03,883 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,118 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-10T20:41:04,119 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:04,119 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:04,119 | ^~ ~~~~~~~~~ 2025-09-10T20:41:04,120 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-10T20:41:04,120 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-10T20:41:04,120 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,121 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:04,121 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:04,121 | ^~~~~~~~~~~~~~~ 2025-09-10T20:41:04,121 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-10T20:41:04,122 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-10T20:41:04,122 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,122 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:04,122 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-10T20:41:04,123 | ^~~~~~~~~~~~~ 2025-09-10T20:41:04,123 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-10T20:41:04,123 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-10T20:41:04,123 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,124 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:04,125 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-10T20:41:04,125 | ^~~~~~~~~~~ 2025-09-10T20:41:04,125 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-10T20:41:04,125 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-10T20:41:04,125 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,126 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-10T20:41:04,126 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-10T20:41:04,126 | ^~~~~ 2025-09-10T20:41:04,126 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-10T20:41:04,127 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-10T20:41:04,127 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,376 command_dist.c: In function ‘combine_queries’: 2025-09-10T20:41:04,377 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:04,377 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-10T20:41:04,378 | ^ 2025-09-10T20:41:04,378 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:04,378 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-10T20:41:04,379 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,379 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:04,380 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-10T20:41:04,380 | ^ 2025-09-10T20:41:04,380 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:04,381 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-10T20:41:04,381 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,383 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:04,383 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-10T20:41:04,383 | ^~ ~~~~~~~~ 2025-09-10T20:41:04,384 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-10T20:41:04,384 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-10T20:41:04,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:04,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2025-09-10T20:41:05,016 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2025-09-10T20:41:05,161 command_set.c: In function ‘sketch_operate’: 2025-09-10T20:41:05,162 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-10T20:41:05,162 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-10T20:41:05,162 | ^ 2025-09-10T20:41:05,171 command_set.c: In function ‘combin_subset_pans’: 2025-09-10T20:41:05,171 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-10T20:41:05,172 457 | free(co_dstat_fpath); 2025-09-10T20:41:05,172 | ^~~~~~~~~~~~~~ 2025-09-10T20:41:05,172 In file included from kssdheaders/global_basic.h:159, 2025-09-10T20:41:05,172 from command_set.c:15: 2025-09-10T20:41:05,173 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-10T20:41:05,173 565 | extern void free (void *__ptr) __THROW; 2025-09-10T20:41:05,173 | ~~~~~~^~~~~ 2025-09-10T20:41:05,176 command_set.c: In function ‘grouping_genomes’: 2025-09-10T20:41:05,177 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-10T20:41:05,177 562 | free(co_dstat_fpath); 2025-09-10T20:41:05,177 | ^~~~~~~~~~~~~~ 2025-09-10T20:41:05,177 In file included from kssdheaders/global_basic.h:159, 2025-09-10T20:41:05,178 from command_set.c:15: 2025-09-10T20:41:05,178 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-10T20:41:05,178 565 | extern void free (void *__ptr) __THROW; 2025-09-10T20:41:05,178 | ~~~~~~^~~~~ 2025-09-10T20:41:05,294 command_set.c: In function ‘sketch_union’: 2025-09-10T20:41:05,294 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:05,294 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,294 | ^ 2025-09-10T20:41:05,295 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:05,295 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,295 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,295 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,296 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-10T20:41:05,296 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,296 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,296 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-10T20:41:05,297 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,297 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,297 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-10T20:41:05,297 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:05,297 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-10T20:41:05,298 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-10T20:41:05,298 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,408 command_set.c: In function ‘sketch_operate’: 2025-09-10T20:41:05,408 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,409 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-10T20:41:05,409 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:05,409 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-10T20:41:05,409 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-10T20:41:05,410 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,410 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,410 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-10T20:41:05,410 | ^~ ~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,410 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-10T20:41:05,411 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-10T20:41:05,411 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,411 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,411 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-10T20:41:05,411 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,412 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:05,412 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-10T20:41:05,412 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,412 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,412 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-10T20:41:05,413 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,413 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,413 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-10T20:41:05,413 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,414 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,414 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-10T20:41:05,414 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,414 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,414 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-10T20:41:05,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,415 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,415 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-10T20:41:05,415 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,416 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:05,416 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-10T20:41:05,416 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,416 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:05,416 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,417 | ^ 2025-09-10T20:41:05,417 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:05,417 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,417 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,565 command_set.c: In function ‘uniq_sketch_union’: 2025-09-10T20:41:05,565 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:05,565 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,565 | ^ 2025-09-10T20:41:05,566 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:05,566 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,566 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,566 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,566 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-10T20:41:05,567 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,567 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,567 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-10T20:41:05,567 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,567 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,568 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-10T20:41:05,568 | ^~ ~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,568 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-10T20:41:05,568 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-10T20:41:05,568 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,691 command_set.c: In function ‘combin_pans’: 2025-09-10T20:41:05,692 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,692 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:05,692 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,692 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-10T20:41:05,693 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:05,693 | ^~~~~~~~~~ 2025-09-10T20:41:05,693 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-10T20:41:05,693 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:05,693 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,694 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,694 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:05,694 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:05,694 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-10T20:41:05,694 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:05,695 | ^~~~~~~~~~ 2025-09-10T20:41:05,695 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-10T20:41:05,695 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:05,695 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,695 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:05,696 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,696 | ^ 2025-09-10T20:41:05,696 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:05,696 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,696 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,877 command_set.c: In function ‘combin_subset_pans’: 2025-09-10T20:41:05,878 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,878 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-10T20:41:05,878 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,878 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,879 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-10T20:41:05,879 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,879 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,879 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-10T20:41:05,879 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:05,879 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:05,880 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-10T20:41:05,880 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,880 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,880 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:05,880 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:05,881 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:05,881 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:05,881 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,882 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:05,882 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:05,882 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:05,882 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:05,882 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:05,882 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:05,883 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:05,883 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,883 | ^ 2025-09-10T20:41:05,883 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:05,883 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:05,884 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,084 command_set.c: In function ‘grouping_genomes’: 2025-09-10T20:41:06,085 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:06,085 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-10T20:41:06,085 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:06,085 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:06,085 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-10T20:41:06,085 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,086 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:06,086 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-10T20:41:06,086 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:06,086 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:06,086 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-10T20:41:06,087 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,088 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:06,088 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:06,088 | ^~ ~~~~~~~~~~~ 2025-09-10T20:41:06,089 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-10T20:41:06,089 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-10T20:41:06,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,089 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-10T20:41:06,090 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:06,090 | ^~ ~~~~~~~~~~ 2025-09-10T20:41:06,090 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-10T20:41:06,090 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-10T20:41:06,090 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,090 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-10T20:41:06,091 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:06,091 | ^ 2025-09-10T20:41:06,091 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-10T20:41:06,091 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-10T20:41:06,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:06,362 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2025-09-10T20:41:06,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2025-09-10T20:41:06,788 global_basic.c: In function ‘organize_infile_list’: 2025-09-10T20:41:06,789 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-10T20:41:06,789 195 | while (isspace(*buf)) buf++; 2025-09-10T20:41:06,789 | ^~~~~~~ 2025-09-10T20:41:06,790 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:06,790 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-10T20:41:06,790 | ~~^ 2025-09-10T20:41:06,790 | | 2025-09-10T20:41:06,790 | long unsigned int 2025-09-10T20:41:06,791 | %u 2025-09-10T20:41:06,791 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-10T20:41:06,791 | ~~~~~~~~~~~ 2025-09-10T20:41:06,791 | | 2025-09-10T20:41:06,792 | size_t {aka unsigned int} 2025-09-10T20:41:06,792 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-10T20:41:06,792 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-10T20:41:06,792 | ~~^ 2025-09-10T20:41:06,793 | | 2025-09-10T20:41:06,793 | long unsigned int 2025-09-10T20:41:06,793 | %u 2025-09-10T20:41:06,793 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-10T20:41:06,793 | ~~~~~~~~~~~ 2025-09-10T20:41:06,794 | | 2025-09-10T20:41:06,794 | size_t {aka unsigned int} 2025-09-10T20:41:07,462 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2025-09-10T20:41:07,612 iseq2comem.c: In function ‘reads2mco’: 2025-09-10T20:41:07,612 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,613 156 | if (base > TL) { 2025-09-10T20:41:07,613 | ^ 2025-09-10T20:41:07,613 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,614 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,614 | ^~ 2025-09-10T20:41:07,614 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,614 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,615 | ^ 2025-09-10T20:41:07,615 iseq2comem.c: In function ‘fasta2co’: 2025-09-10T20:41:07,615 iseq2comem.c:240:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,615 240 | if (base > TL) { 2025-09-10T20:41:07,615 | ^ 2025-09-10T20:41:07,616 iseq2comem.c:244:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,616 244 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,616 | ^~ 2025-09-10T20:41:07,616 iseq2comem.c:244:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,617 244 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,617 | ^ 2025-09-10T20:41:07,617 iseq2comem.c: In function ‘fastq2co’: 2025-09-10T20:41:07,617 iseq2comem.c:274:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2025-09-10T20:41:07,618 274 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2025-09-10T20:41:07,618 | ^~ 2025-09-10T20:41:07,618 iseq2comem.c:320:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,618 320 | if (base > TL) { 2025-09-10T20:41:07,618 | ^ 2025-09-10T20:41:07,619 iseq2comem.c:324:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,619 324 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,619 | ^~ 2025-09-10T20:41:07,619 iseq2comem.c:324:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,619 324 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,620 | ^ 2025-09-10T20:41:07,620 iseq2comem.c:343:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,620 343 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2025-09-10T20:41:07,620 | ^ 2025-09-10T20:41:07,621 iseq2comem.c: In function ‘fastq2koc’: 2025-09-10T20:41:07,621 iseq2comem.c:405:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,621 405 | if (base > TL) { 2025-09-10T20:41:07,621 | ^ 2025-09-10T20:41:07,622 iseq2comem.c:409:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,622 409 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,622 | ^~ 2025-09-10T20:41:07,622 iseq2comem.c:409:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,623 409 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,623 | ^ 2025-09-10T20:41:07,627 iseq2comem.c: In function ‘mt_shortreads2koc’: 2025-09-10T20:41:07,627 iseq2comem.c:585:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,627 585 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,628 | ^~ 2025-09-10T20:41:07,628 iseq2comem.c:585:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-10T20:41:07,628 585 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-10T20:41:07,628 | ^ 2025-09-10T20:41:08,796 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2025-09-10T20:41:08,855 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2025-09-10T20:41:08,976 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2025-09-10T20:41:09,288 pykssd.c: In function ‘py_dist_dispatch’: 2025-09-10T20:41:09,289 pykssd.c:339:13: warning: unused variable ‘state1’ [-Wunused-variable] 2025-09-10T20:41:09,289 339 | int state1 = dist_dispatch(&dist_opt_val1); 2025-09-10T20:41:09,289 | ^~~~~~ 2025-09-10T20:41:09,290 pykssd.c:404:13: warning: unused variable ‘state2’ [-Wunused-variable] 2025-09-10T20:41:09,290 404 | int state2 = dist_dispatch(&dist_opt_val2); 2025-09-10T20:41:09,290 | ^~~~~~ 2025-09-10T20:41:09,291 pykssd.c:538:13: warning: unused variable ‘state4’ [-Wunused-variable] 2025-09-10T20:41:09,292 538 | int state4 = dist_dispatch(&dist_opt_val4); 2025-09-10T20:41:09,292 | ^~~~~~ 2025-09-10T20:41:09,436 pykssd.c: In function ‘rename_file’: 2025-09-10T20:41:09,437 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2025-09-10T20:41:09,437 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2025-09-10T20:41:09,437 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-10T20:41:09,437 pykssd.c:41:15: note: length computed here 2025-09-10T20:41:09,438 41 | int len = strlen(p1); 2025-09-10T20:41:09,438 | ^~~~~~~~~~ 2025-09-10T20:41:09,871 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -fopenmp 2025-09-10T20:41:10,041 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-10T20:41:10,042 !! 2025-09-10T20:41:10,042 ******************************************************************************** 2025-09-10T20:41:10,042 Please avoid running ``setup.py`` directly. 2025-09-10T20:41:10,042 Instead, use pypa/build, pypa/installer or other 2025-09-10T20:41:10,043 standards-based tools. 2025-09-10T20:41:10,043 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-10T20:41:10,043 or your builds will no longer be supported. 2025-09-10T20:41:10,043 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-10T20:41:10,044 ******************************************************************************** 2025-09-10T20:41:10,044 !! 2025-09-10T20:41:10,044 self.initialize_options() 2025-09-10T20:41:10,070 installing to build/bdist.linux-armv7l/wheel 2025-09-10T20:41:10,071 running install 2025-09-10T20:41:10,092 running install_lib 2025-09-10T20:41:10,118 creating build/bdist.linux-armv7l/wheel 2025-09-10T20:41:10,120 copying build/lib.linux-armv7l-cpython-39/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2025-09-10T20:41:10,123 copying build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-10T20:41:10,132 running install_egg_info 2025-09-10T20:41:10,168 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.1.2-py3.9.egg-info 2025-09-10T20:41:10,182 running install_scripts 2025-09-10T20:41:10,229 creating build/bdist.linux-armv7l/wheel/kssdutils-1.1.2.dist-info/WHEEL 2025-09-10T20:41:10,232 creating '/tmp/pip-wheel-h724yjwq/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-10T20:41:10,327 adding 'kssdtool.cpython-39-arm-linux-gnueabihf.so' 2025-09-10T20:41:10,332 adding 'kssdutils.py' 2025-09-10T20:41:10,335 adding 'kssdutils-1.1.2.dist-info/METADATA' 2025-09-10T20:41:10,336 adding 'kssdutils-1.1.2.dist-info/WHEEL' 2025-09-10T20:41:10,337 adding 'kssdutils-1.1.2.dist-info/dependency_links.txt' 2025-09-10T20:41:10,338 adding 'kssdutils-1.1.2.dist-info/top_level.txt' 2025-09-10T20:41:10,340 adding 'kssdutils-1.1.2.dist-info/RECORD' 2025-09-10T20:41:10,343 removing build/bdist.linux-armv7l/wheel 2025-09-10T20:41:10,469 Building wheel for kssdutils (setup.py): finished with status 'done' 2025-09-10T20:41:10,472 Created wheel for kssdutils: filename=kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl size=182541 sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 2025-09-10T20:41:10,472 Stored in directory: /tmp/pip-ephem-wheel-cache-15cal01s/wheels/d3/43/13/1c2be1d08ee4dedd345243fd8334b5a533a249989568aff461 2025-09-10T20:41:10,480 Successfully built kssdutils 2025-09-10T20:41:10,487 Removed build tracker: '/tmp/pip-req-tracker-t2752cvl'