2025-09-10T23:17:52,313 Created temporary directory: /tmp/pip-build-tracker-f7p2mnuc
2025-09-10T23:17:52,314 Initialized build tracking at /tmp/pip-build-tracker-f7p2mnuc
2025-09-10T23:17:52,315 Created build tracker: /tmp/pip-build-tracker-f7p2mnuc
2025-09-10T23:17:52,316 Entered build tracker: /tmp/pip-build-tracker-f7p2mnuc
2025-09-10T23:17:52,316 Created temporary directory: /tmp/pip-wheel-48nwg6wf
2025-09-10T23:17:52,321 Created temporary directory: /tmp/pip-ephem-wheel-cache-0wulnrzc
2025-09-10T23:17:52,367 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-10T23:17:52,370 2 location(s) to search for versions of pyhmmsearch:
2025-09-10T23:17:52,370 * https://pypi.org/simple/pyhmmsearch/
2025-09-10T23:17:52,370 * https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T23:17:52,371 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmsearch/
2025-09-10T23:17:52,371 Getting page https://pypi.org/simple/pyhmmsearch/
2025-09-10T23:17:52,373 Found index url https://pypi.org/simple/
2025-09-10T23:17:52,518 Fetched page https://pypi.org/simple/pyhmmsearch/ as application/vnd.pypi.simple.v1+json
2025-09-10T23:17:52,520   Found link https://files.pythonhosted.org/packages/7c/cd/98e7487244f17f47d7a59a6a51cb8cb802bc528f21fbb62eb7ed2dda2452/pyhmmsearch-2024.4.25.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.4.25
2025-09-10T23:17:52,521   Found link https://files.pythonhosted.org/packages/34/bf/bc47f02347063541a81bd46209fb17b6875ab825d8cf68b9c816b8cf3cef/pyhmmsearch-2024.6.6.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.6
2025-09-10T23:17:52,522   Found link https://files.pythonhosted.org/packages/c6/d7/463abf0dfa0f0a9b16ac48c227f3d01f1f508a5c2c4585e7a646e61674bf/pyhmmsearch-2024.6.7.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.7
2025-09-10T23:17:52,522   Found link https://files.pythonhosted.org/packages/57/74/322d4c5a5b7be11bef316d94eca10dbda1c119538ad59a9862934d486086/pyhmmsearch-2024.6.8.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.8
2025-09-10T23:17:52,523   Found link https://files.pythonhosted.org/packages/10/73/e68e753b30def427e22ffb413e813263a9e3e633dcbd0492e18a2e2f49ed/pyhmmsearch-2024.7.29.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.7.29
2025-09-10T23:17:52,524   Found link https://files.pythonhosted.org/packages/67/27/6d3da29d36bf24b680b7cfa688908600b2da6b6ed84e924eaa2c274b9078/pyhmmsearch-2024.10.18.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.18
2025-09-10T23:17:52,524   Found link https://files.pythonhosted.org/packages/d6/2e/c500ecf945ff7914e7e7208456b8393295a11ee5588826a3924032a6527a/pyhmmsearch-2024.10.20.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.20
2025-09-10T23:17:52,525   Found link https://files.pythonhosted.org/packages/03/7f/39f2b4c0c2178b3a6cf5a4abfb56bdb94c0cc428bd094f84dfc30b352e61/pyhmmsearch-2025.1.23.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.1.23
2025-09-10T23:17:52,526   Found link https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4
2025-09-10T23:17:52,526   Found link https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4.post1
2025-09-10T23:17:52,527   Found link https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.5
2025-09-10T23:17:52,528 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T23:17:52,528 Getting page https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T23:17:52,530 Found index url https://www.piwheels.org/simple/
2025-09-10T23:17:52,699 Fetched page https://www.piwheels.org/simple/pyhmmsearch/ as text/html
2025-09-10T23:17:52,702   Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.4.post1-py3-none-any.whl#sha256=520479c15472c4a30fca0d210d560ea851789edefc609fe90f55f2d479a1fbd6 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,702   Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.4-py3-none-any.whl#sha256=5490d9457e1bd198733c098879e8e5be680705ac5fae57864c58683bb925f0f3 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,703   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.1.23-py3-none-any.whl#sha256=01541818335acf1bb63aacd9550b2a0693778ebab01c44a5e38a2f5378cb5efb (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,703   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.20-py3-none-any.whl#sha256=1ab100ddcf36d0e7e36089877fbab9b3aba84aac0bd1ba4592558ef552b014ac (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,704   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.18-py3-none-any.whl#sha256=c137db73e490f6c184a8839f86e0d3e656ef246bfdb33e92e20bfe9d3e2065ea (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,704   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.7.29-py3-none-any.whl#sha256=9d6e4f612bc54c2b8544ba0736d3ecd4077ad1903a240d3a3b21f1109023b5be (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,705   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.8-py3-none-any.whl#sha256=2aa87c32caa940ba9258c008b0068c85476ac26751885c44e8e88dd68d9b9a69 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,705   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.7-py3-none-any.whl#sha256=73b2ec6860fddad0f9486a3b2f37c53deec4318fa9e24e8e359c45258faf6749 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,706   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.6-py3-none-any.whl#sha256=879f7399d9f7a37b49e15a398ec51a93dd4a3685b0767a3d86f62fc23f4e5269 (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,706   Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.4.25-py3-none-any.whl#sha256=a394d806d600287765c3dd15b625b7f3e7b6c6d78c1155da6441060ceb803f6f (from https://www.piwheels.org/simple/pyhmmsearch/)
2025-09-10T23:17:52,707 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmsearch/
2025-09-10T23:17:52,708 Skipping link: not a file: https://pypi.org/simple/pyhmmsearch/
2025-09-10T23:17:52,726 Given no hashes to check 1 links for project 'pyhmmsearch': discarding no candidates
2025-09-10T23:17:52,728 Collecting pyhmmsearch==2025.9.5
2025-09-10T23:17:52,730   Created temporary directory: /tmp/pip-unpack-e1l6d4xn
2025-09-10T23:17:52,949   Downloading pyhmmsearch-2025.9.5.tar.gz (9.5 kB)
2025-09-10T23:17:52,985   Added pyhmmsearch==2025.9.5 from https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz to build tracker '/tmp/pip-build-tracker-f7p2mnuc'
2025-09-10T23:17:52,987   Running setup.py (path:/tmp/pip-wheel-48nwg6wf/pyhmmsearch_2567b9a90df94d88b2a21ab33fb3b96f/setup.py) egg_info for package pyhmmsearch
2025-09-10T23:17:52,988   Created temporary directory: /tmp/pip-pip-egg-info-rgfhn1gt
2025-09-10T23:17:52,988   Preparing metadata (setup.py): started
2025-09-10T23:17:52,990   Running command python setup.py egg_info
2025-09-10T23:17:53,852   running egg_info
2025-09-10T23:17:53,879   creating /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info
2025-09-10T23:17:53,880   writing /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/PKG-INFO
2025-09-10T23:17:53,883   writing dependency_links to /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/dependency_links.txt
2025-09-10T23:17:53,884   writing entry points to /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/entry_points.txt
2025-09-10T23:17:53,886   writing requirements to /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/requires.txt
2025-09-10T23:17:53,887   writing top-level names to /tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/top_level.txt
2025-09-10T23:17:53,888   writing manifest file '/tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T23:17:53,971   reading manifest file '/tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T23:17:53,972   reading manifest template 'MANIFEST.in'
2025-09-10T23:17:53,975   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-09-10T23:17:53,976   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-09-10T23:17:53,976   warning: no previously-included files matching '*~' found anywhere in distribution
2025-09-10T23:17:53,977   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-10T23:17:53,977   adding license file 'LICENSE'
2025-09-10T23:17:53,980   writing manifest file '/tmp/pip-pip-egg-info-rgfhn1gt/pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T23:17:54,084   Preparing metadata (setup.py): finished with status 'done'
2025-09-10T23:17:54,088   Source in /tmp/pip-wheel-48nwg6wf/pyhmmsearch_2567b9a90df94d88b2a21ab33fb3b96f has version 2025.9.5, which satisfies requirement pyhmmsearch==2025.9.5 from https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz
2025-09-10T23:17:54,089   Removed pyhmmsearch==2025.9.5 from https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz from build tracker '/tmp/pip-build-tracker-f7p2mnuc'
2025-09-10T23:17:54,094 Created temporary directory: /tmp/pip-unpack-4vmrozpn
2025-09-10T23:17:54,095 Created temporary directory: /tmp/pip-unpack-d19v2_n0
2025-09-10T23:17:54,096 Building wheels for collected packages: pyhmmsearch
2025-09-10T23:17:54,099   Created temporary directory: /tmp/pip-wheel-q3ik2u4h
2025-09-10T23:17:54,100   DEPRECATION: Building 'pyhmmsearch' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyhmmsearch'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-10T23:17:54,101   Building wheel for pyhmmsearch (setup.py): started
2025-09-10T23:17:54,102   Destination directory: /tmp/pip-wheel-q3ik2u4h
2025-09-10T23:17:54,103   Running command python setup.py bdist_wheel
2025-09-10T23:17:54,944   running bdist_wheel
2025-09-10T23:17:55,072   running build
2025-09-10T23:17:55,073   running build_py
2025-09-10T23:17:55,102   creating build/lib/pyhmmsearch
2025-09-10T23:17:55,104   copying pyhmmsearch/serialize_hmm_models.py -> build/lib/pyhmmsearch
2025-09-10T23:17:55,107   copying pyhmmsearch/__init__.py -> build/lib/pyhmmsearch
2025-09-10T23:17:55,109   copying pyhmmsearch/reformat_pyhmmsearch.py -> build/lib/pyhmmsearch
2025-09-10T23:17:55,110   copying pyhmmsearch/pyhmmsearch.py -> build/lib/pyhmmsearch
2025-09-10T23:17:55,140   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-10T23:17:55,141   !!

2025-09-10T23:17:55,142           ********************************************************************************
2025-09-10T23:17:55,143           Please avoid running ``setup.py`` directly.
2025-09-10T23:17:55,144           Instead, use pypa/build, pypa/installer or other
2025-09-10T23:17:55,144           standards-based tools.

2025-09-10T23:17:55,145           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-10T23:17:55,145           or your builds will no longer be supported.

2025-09-10T23:17:55,146           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-10T23:17:55,147           ********************************************************************************

2025-09-10T23:17:55,148   !!
2025-09-10T23:17:55,148     self.initialize_options()
2025-09-10T23:17:55,168   installing to build/bdist.linux-armv7l/wheel
2025-09-10T23:17:55,169   running install
2025-09-10T23:17:55,192   running install_lib
2025-09-10T23:17:55,218   creating build/bdist.linux-armv7l/wheel
2025-09-10T23:17:55,220   creating build/bdist.linux-armv7l/wheel/pyhmmsearch
2025-09-10T23:17:55,221   copying build/lib/pyhmmsearch/serialize_hmm_models.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T23:17:55,224   copying build/lib/pyhmmsearch/__init__.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T23:17:55,225   copying build/lib/pyhmmsearch/reformat_pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T23:17:55,227   copying build/lib/pyhmmsearch/pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch
2025-09-10T23:17:55,229   running install_egg_info
2025-09-10T23:17:55,262   running egg_info
2025-09-10T23:17:55,289   writing pyhmmsearch.egg-info/PKG-INFO
2025-09-10T23:17:55,292   writing dependency_links to pyhmmsearch.egg-info/dependency_links.txt
2025-09-10T23:17:55,293   writing entry points to pyhmmsearch.egg-info/entry_points.txt
2025-09-10T23:17:55,295   writing requirements to pyhmmsearch.egg-info/requires.txt
2025-09-10T23:17:55,296   writing top-level names to pyhmmsearch.egg-info/top_level.txt
2025-09-10T23:17:55,326   reading manifest file 'pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T23:17:55,328   reading manifest template 'MANIFEST.in'
2025-09-10T23:17:55,330   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-09-10T23:17:55,331   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-09-10T23:17:55,332   warning: no previously-included files matching '*~' found anywhere in distribution
2025-09-10T23:17:55,332   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-10T23:17:55,333   adding license file 'LICENSE'
2025-09-10T23:17:55,336   writing manifest file 'pyhmmsearch.egg-info/SOURCES.txt'
2025-09-10T23:17:55,337   Copying pyhmmsearch.egg-info to build/bdist.linux-armv7l/wheel/./pyhmmsearch-2025.9.5-py3.11.egg-info
2025-09-10T23:17:55,348   running install_scripts
2025-09-10T23:17:55,362   creating build/bdist.linux-armv7l/wheel/pyhmmsearch-2025.9.5.dist-info/WHEEL
2025-09-10T23:17:55,364   creating '/tmp/pip-wheel-q3ik2u4h/pyhmmsearch-2025.9.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-10T23:17:55,366   adding 'pyhmmsearch/__init__.py'
2025-09-10T23:17:55,368   adding 'pyhmmsearch/pyhmmsearch.py'
2025-09-10T23:17:55,370   adding 'pyhmmsearch/reformat_pyhmmsearch.py'
2025-09-10T23:17:55,372   adding 'pyhmmsearch/serialize_hmm_models.py'
2025-09-10T23:17:55,375   adding 'pyhmmsearch-2025.9.5.dist-info/licenses/LICENSE'
2025-09-10T23:17:55,376   adding 'pyhmmsearch-2025.9.5.dist-info/METADATA'
2025-09-10T23:17:55,377   adding 'pyhmmsearch-2025.9.5.dist-info/WHEEL'
2025-09-10T23:17:55,378   adding 'pyhmmsearch-2025.9.5.dist-info/entry_points.txt'
2025-09-10T23:17:55,379   adding 'pyhmmsearch-2025.9.5.dist-info/top_level.txt'
2025-09-10T23:17:55,379   adding 'pyhmmsearch-2025.9.5.dist-info/RECORD'
2025-09-10T23:17:55,381   removing build/bdist.linux-armv7l/wheel
2025-09-10T23:17:55,491   Building wheel for pyhmmsearch (setup.py): finished with status 'done'
2025-09-10T23:17:55,493   Created wheel for pyhmmsearch: filename=pyhmmsearch-2025.9.5-py3-none-any.whl size=8923 sha256=b37dcb5b77df27ed90a0363fb6e72167b45733959714120bddbb2f4f727efb60
2025-09-10T23:17:55,495   Stored in directory: /tmp/pip-ephem-wheel-cache-0wulnrzc/wheels/5b/d8/8f/0e961255b787c7e870bf9b49e6a3914b6bd5e044558d56526b
2025-09-10T23:17:55,504 Successfully built pyhmmsearch
2025-09-10T23:17:55,507 Removed build tracker: '/tmp/pip-build-tracker-f7p2mnuc'