2025-09-12T02:06:42,684 Created temporary directory: /tmp/pip-build-tracker-rbbl8cg0 2025-09-12T02:06:42,685 Initialized build tracking at /tmp/pip-build-tracker-rbbl8cg0 2025-09-12T02:06:42,685 Created build tracker: /tmp/pip-build-tracker-rbbl8cg0 2025-09-12T02:06:42,685 Entered build tracker: /tmp/pip-build-tracker-rbbl8cg0 2025-09-12T02:06:42,686 Created temporary directory: /tmp/pip-wheel-1kwoqfb0 2025-09-12T02:06:42,689 Created temporary directory: /tmp/pip-ephem-wheel-cache-r6ba0k50 2025-09-12T02:06:42,766 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-12T02:06:42,769 2 location(s) to search for versions of dcicpyvcf: 2025-09-12T02:06:42,769 * https://pypi.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,769 * https://www.piwheels.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,769 Fetching project page and analyzing links: https://pypi.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,769 Getting page https://pypi.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,770 Found index url https://pypi.org/simple/ 2025-09-12T02:06:42,923 Fetched page https://pypi.org/simple/dcicpyvcf/ as application/vnd.pypi.simple.v1+json 2025-09-12T02:06:42,928 Found link https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/), version: 1.0.0 2025-09-12T02:06:42,929 Found link https://files.pythonhosted.org/packages/2c/3d/c4ce96ad7befff351faee377ba0f93c6458914437d7e5f2a3b8c3dccacd5/dcicpyvcf-1.0.0.1b0.tar.gz (from https://pypi.org/simple/dcicpyvcf/), version: 1.0.0.1b0 2025-09-12T02:06:42,930 Found link https://files.pythonhosted.org/packages/1a/dd/8240e91faf8d305a7c7b48e03101ee8bc3cca22c82d4efc06c91f12c03c9/dcicpyvcf-2.0.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/), version: 2.0.0 2025-09-12T02:06:42,930 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/b8/ac/cc293fd025db239f0dc38c6d983b02a2f0e59e9ea950317ca5d6dc3dfc30/dcicpyvcf-3.0.0a3-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,932 Link requires a different Python (3.13.5 not in: '>=3.8.0,<3.12'): https://files.pythonhosted.org/packages/63/1a/27299f212539df1f9c06ec03fd7663f40ed4a6fc854bda28803053852167/dcicpyvcf-3.0.0a3.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,932 Skipping link: 3.0.0a3 Requires-Python >=3.8.0,<3.12: https://files.pythonhosted.org/packages/63/1a/27299f212539df1f9c06ec03fd7663f40ed4a6fc854bda28803053852167/dcicpyvcf-3.0.0a3.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,933 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/2c/93/c5096bd3543497645e2de319ac5fc07562f41d9be42e67ebf6c2167dddfc/dcicpyvcf-3.0.0a4-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,933 Link requires a different Python (3.13.5 not in: '>=3.8.0,<3.12'): https://files.pythonhosted.org/packages/0b/e1/e033ff2b097e651f87296b2c24d06b66cc304e96cd931087459e4a5f70fc/dcicpyvcf-3.0.0a4.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,933 Skipping link: 3.0.0a4 Requires-Python >=3.8.0,<3.12: https://files.pythonhosted.org/packages/0b/e1/e033ff2b097e651f87296b2c24d06b66cc304e96cd931087459e4a5f70fc/dcicpyvcf-3.0.0a4.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,934 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/d6/61/87f4804b0423ea777343627a2faaa9e807d42a16ffd596ea1279689201a2/dcicpyvcf-3.0.0-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,934 Link requires a different Python (3.13.5 not in: '>=3.8.0,<3.12'): https://files.pythonhosted.org/packages/be/60/e9aaedfedbd31a24b2d50c765a959d69621975915195b9a986353db9d4b5/dcicpyvcf-3.0.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,935 Skipping link: 3.0.0 Requires-Python >=3.8.0,<3.12: https://files.pythonhosted.org/packages/be/60/e9aaedfedbd31a24b2d50c765a959d69621975915195b9a986353db9d4b5/dcicpyvcf-3.0.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.12) 2025-09-12T02:06:42,935 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/a5/aa/153bc456b08d8f29fc2bb60dc7c46d044ce32cbeb201fc61b22bf4f7f30a/dcicpyvcf-3.0.0.1b6-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,936 Link requires a different Python (3.13.5 not in: '<3.13,>=3.8.0'): https://files.pythonhosted.org/packages/ec/af/d43feb6e9e191f38cb38cc65cdce27105923c1f4f3a551089d2591ec083b/dcicpyvcf-3.0.0.1b6.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,937 Skipping link: 3.0.0.1b6 Requires-Python <3.13,>=3.8.0: https://files.pythonhosted.org/packages/ec/af/d43feb6e9e191f38cb38cc65cdce27105923c1f4f3a551089d2591ec083b/dcicpyvcf-3.0.0.1b6.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,937 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/cc/76/e3b8da55da26841c3143fcf9b20d677f1e1399f43334f41e03446941ab11/dcicpyvcf-3.0.0.1b7-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,937 Link requires a different Python (3.13.5 not in: '<3.13,>=3.8.0'): https://files.pythonhosted.org/packages/5d/fd/76c51a56878c1642291649f7681da5a5c423aea7bf89bd9e8968b4f468c6/dcicpyvcf-3.0.0.1b7.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,938 Skipping link: 3.0.0.1b7 Requires-Python <3.13,>=3.8.0: https://files.pythonhosted.org/packages/5d/fd/76c51a56878c1642291649f7681da5a5c423aea7bf89bd9e8968b4f468c6/dcicpyvcf-3.0.0.1b7.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,938 Skipping link: No binaries permitted for dcicpyvcf: https://files.pythonhosted.org/packages/bd/6c/7018d49f920347f19c3a3fe58c905cae7bf8437100ad83dca15292522570/dcicpyvcf-3.1.0-py3-none-any.whl (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,938 Link requires a different Python (3.13.5 not in: '<3.13,>=3.8.0'): https://files.pythonhosted.org/packages/0a/ae/c1939479499691fe07ea3f9a327447b71f90bc4ddbc66ccccb2ba40dd1e1/dcicpyvcf-3.1.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,939 Skipping link: 3.1.0 Requires-Python <3.13,>=3.8.0: https://files.pythonhosted.org/packages/0a/ae/c1939479499691fe07ea3f9a327447b71f90bc4ddbc66ccccb2ba40dd1e1/dcicpyvcf-3.1.0.tar.gz (from https://pypi.org/simple/dcicpyvcf/) (requires-python:<3.13,>=3.8.0) 2025-09-12T02:06:42,939 Fetching project page and analyzing links: https://www.piwheels.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,940 Getting page https://www.piwheels.org/simple/dcicpyvcf/ 2025-09-12T02:06:42,942 Found index url https://www.piwheels.org/simple/ 2025-09-12T02:06:43,097 Fetched page https://www.piwheels.org/simple/dcicpyvcf/ as text/html 2025-09-12T02:06:43,108 Skipping link: No binaries permitted for dcicpyvcf: https://archive1.piwheels.org/simple/dcicpyvcf/dcicpyvcf-3.1.0-py3-none-any.whl#sha256=a8c5a47ce2e859ad52a0089d67aa394370aaad90356dd834b08f23c7ad8cac9b (from https://www.piwheels.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.13) 2025-09-12T02:06:43,109 Skipping link: No binaries permitted for dcicpyvcf: https://archive1.piwheels.org/simple/dcicpyvcf/dcicpyvcf-3.0.0.1b7-py3-none-any.whl#sha256=19d68c347e4f8987e6469fe5c34bf4ca083d39254f43a1abfb3fdf37200e163c (from https://www.piwheels.org/simple/dcicpyvcf/) (requires-python:>=3.8.0,<3.13) 2025-09-12T02:06:43,109 Skipping link: No binaries permitted for dcicpyvcf: 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no hashes to check 1 links for project 'dcicpyvcf': discarding no candidates 2025-09-12T02:06:43,141 Collecting dcicpyvcf==1.0.0.1b0 2025-09-12T02:06:43,143 Created temporary directory: /tmp/pip-unpack-ay2myj9f 2025-09-12T02:06:43,287 Downloading dcicpyvcf-1.0.0.1b0.tar.gz (35 kB) 2025-09-12T02:06:43,323 Added dcicpyvcf==1.0.0.1b0 from https://files.pythonhosted.org/packages/2c/3d/c4ce96ad7befff351faee377ba0f93c6458914437d7e5f2a3b8c3dccacd5/dcicpyvcf-1.0.0.1b0.tar.gz to build tracker '/tmp/pip-build-tracker-rbbl8cg0' 2025-09-12T02:06:43,325 Running setup.py (path:/tmp/pip-wheel-1kwoqfb0/dcicpyvcf_8cb3594931e8478daf7ea369d2c599b4/setup.py) egg_info for package dcicpyvcf 2025-09-12T02:06:43,325 Created temporary directory: /tmp/pip-pip-egg-info-6xi2_o3k 2025-09-12T02:06:43,325 Preparing metadata (setup.py): started 2025-09-12T02:06:43,326 Running command python setup.py egg_info 2025-09-12T02:06:44,099 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-12T02:06:44,099 warnings.warn(msg) 2025-09-12T02:06:44,488 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-12T02:06:44,488 !! 2025-09-12T02:06:44,489 ******************************************************************************** 2025-09-12T02:06:44,489 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-12T02:06:44,489 License :: OSI Approved :: BSD License 2025-09-12T02:06:44,489 License :: OSI Approved :: MIT License 2025-09-12T02:06:44,489 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-12T02:06:44,489 ******************************************************************************** 2025-09-12T02:06:44,489 !! 2025-09-12T02:06:44,490 self._finalize_license_expression() 2025-09-12T02:06:44,564 running egg_info 2025-09-12T02:06:44,640 creating /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info 2025-09-12T02:06:44,640 writing /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/PKG-INFO 2025-09-12T02:06:44,641 writing dependency_links to /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/dependency_links.txt 2025-09-12T02:06:44,642 writing entry points to /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/entry_points.txt 2025-09-12T02:06:44,642 writing requirements to /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/requires.txt 2025-09-12T02:06:44,643 writing top-level names to /tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/top_level.txt 2025-09-12T02:06:44,643 writing manifest file '/tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/SOURCES.txt' 2025-09-12T02:06:44,952 reading manifest file '/tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/SOURCES.txt' 2025-09-12T02:06:44,953 reading manifest template 'MANIFEST.in' 2025-09-12T02:06:44,957 writing manifest file '/tmp/pip-pip-egg-info-6xi2_o3k/dcicpyvcf.egg-info/SOURCES.txt' 2025-09-12T02:06:45,070 Preparing metadata (setup.py): finished with status 'done' 2025-09-12T02:06:45,074 Source in /tmp/pip-wheel-1kwoqfb0/dcicpyvcf_8cb3594931e8478daf7ea369d2c599b4 has version 1.0.0.1b0, which satisfies requirement dcicpyvcf==1.0.0.1b0 from https://files.pythonhosted.org/packages/2c/3d/c4ce96ad7befff351faee377ba0f93c6458914437d7e5f2a3b8c3dccacd5/dcicpyvcf-1.0.0.1b0.tar.gz 2025-09-12T02:06:45,075 Removed dcicpyvcf==1.0.0.1b0 from https://files.pythonhosted.org/packages/2c/3d/c4ce96ad7befff351faee377ba0f93c6458914437d7e5f2a3b8c3dccacd5/dcicpyvcf-1.0.0.1b0.tar.gz from build tracker '/tmp/pip-build-tracker-rbbl8cg0' 2025-09-12T02:06:45,078 Created temporary directory: /tmp/pip-unpack-p182lmb7 2025-09-12T02:06:45,078 Created temporary directory: /tmp/pip-unpack-wfo2g5v5 2025-09-12T02:06:45,078 Building wheels for collected packages: dcicpyvcf 2025-09-12T02:06:45,079 Created temporary directory: /tmp/pip-wheel-azxv2z3l 2025-09-12T02:06:45,080 DEPRECATION: Building 'dcicpyvcf' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'dcicpyvcf'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-12T02:06:45,081 Building wheel for dcicpyvcf (setup.py): started 2025-09-12T02:06:45,082 Destination directory: /tmp/pip-wheel-azxv2z3l 2025-09-12T02:06:45,082 Running command python setup.py bdist_wheel 2025-09-12T02:06:45,785 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-12T02:06:45,785 warnings.warn(msg) 2025-09-12T02:06:46,162 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-12T02:06:46,163 !! 2025-09-12T02:06:46,163 ******************************************************************************** 2025-09-12T02:06:46,163 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-12T02:06:46,163 License :: OSI Approved :: BSD License 2025-09-12T02:06:46,163 License :: OSI Approved :: MIT License 2025-09-12T02:06:46,163 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-12T02:06:46,164 ******************************************************************************** 2025-09-12T02:06:46,164 !! 2025-09-12T02:06:46,164 self._finalize_license_expression() 2025-09-12T02:06:46,164 running bdist_wheel 2025-09-12T02:06:46,462 running build 2025-09-12T02:06:46,462 running build_py 2025-09-12T02:06:46,540 creating build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,541 copying vcf/filters.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,541 copying vcf/sample_filter.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,542 copying vcf/utils.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,542 copying vcf/parser.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,543 copying vcf/model.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,544 copying vcf/__init__.py -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,544 creating build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-12T02:06:46,545 copying vcf/test/__init__.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-12T02:06:46,545 copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-12T02:06:46,546 copying vcf/test/prof.py -> build/lib.linux-armv7l-cpython-313/vcf/test 2025-09-12T02:06:46,546 running egg_info 2025-09-12T02:06:46,621 writing dcicpyvcf.egg-info/PKG-INFO 2025-09-12T02:06:46,622 writing dependency_links to dcicpyvcf.egg-info/dependency_links.txt 2025-09-12T02:06:46,622 writing entry points to dcicpyvcf.egg-info/entry_points.txt 2025-09-12T02:06:46,623 writing requirements to dcicpyvcf.egg-info/requires.txt 2025-09-12T02:06:46,623 writing top-level names to dcicpyvcf.egg-info/top_level.txt 2025-09-12T02:06:46,703 reading manifest file 'dcicpyvcf.egg-info/SOURCES.txt' 2025-09-12T02:06:46,705 reading manifest template 'MANIFEST.in' 2025-09-12T02:06:46,709 writing manifest file 'dcicpyvcf.egg-info/SOURCES.txt' 2025-09-12T02:06:46,711 copying vcf/cparse.pyx -> build/lib.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:46,712 running build_ext 2025-09-12T02:06:47,052 Compiling vcf/cparse.pyx because it changed. 2025-09-12T02:06:47,052 [1/1] Cythonizing vcf/cparse.pyx 2025-09-12T02:06:47,904 warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-12T02:06:47,905 warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-12T02:06:47,905 warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-12T02:06:47,905 warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-12T02:06:48,141 building 'vcf.cparse' extension 2025-09-12T02:06:48,142 creating build/temp.linux-armv7l-cpython-313/vcf 2025-09-12T02:06:48,143 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-armv7l-cpython-313/vcf/cparse.o 2025-09-12T02:06:55,741 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/vcf/cparse.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/vcf/cparse.cpython-313-arm-linux-gnueabihf.so 2025-09-12T02:06:55,863 running build_scripts 2025-09-12T02:06:55,864 creating build/scripts-3.13 2025-09-12T02:06:55,864 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 2025-09-12T02:06:55,864 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 2025-09-12T02:06:55,864 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 2025-09-12T02:06:55,864 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 2025-09-12T02:06:55,864 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 2025-09-12T02:06:55,864 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 2025-09-12T02:06:55,944 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-12T02:06:55,944 !! 2025-09-12T02:06:55,945 ******************************************************************************** 2025-09-12T02:06:55,945 Please avoid running ``setup.py`` directly. 2025-09-12T02:06:55,945 Instead, use pypa/build, pypa/installer or other 2025-09-12T02:06:55,945 standards-based tools. 2025-09-12T02:06:55,945 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-12T02:06:55,945 or your builds will no longer be supported. 2025-09-12T02:06:55,945 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-12T02:06:55,946 ******************************************************************************** 2025-09-12T02:06:55,946 !! 2025-09-12T02:06:55,946 self.initialize_options() 2025-09-12T02:06:56,018 installing to build/bdist.linux-armv7l/wheel 2025-09-12T02:06:56,018 running install 2025-09-12T02:06:56,040 running install_lib 2025-09-12T02:06:56,115 creating build/bdist.linux-armv7l/wheel 2025-09-12T02:06:56,115 creating build/bdist.linux-armv7l/wheel/vcf 2025-09-12T02:06:56,116 copying build/lib.linux-armv7l-cpython-313/vcf/cparse.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,118 copying build/lib.linux-armv7l-cpython-313/vcf/cparse.pyx -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,118 creating build/bdist.linux-armv7l/wheel/vcf/test 2025-09-12T02:06:56,119 copying build/lib.linux-armv7l-cpython-313/vcf/test/prof.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-12T02:06:56,119 copying build/lib.linux-armv7l-cpython-313/vcf/test/test_vcf.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-12T02:06:56,120 copying build/lib.linux-armv7l-cpython-313/vcf/test/__init__.py -> build/bdist.linux-armv7l/wheel/./vcf/test 2025-09-12T02:06:56,120 copying build/lib.linux-armv7l-cpython-313/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,120 copying build/lib.linux-armv7l-cpython-313/vcf/model.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,121 copying build/lib.linux-armv7l-cpython-313/vcf/parser.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,121 copying build/lib.linux-armv7l-cpython-313/vcf/utils.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,122 copying build/lib.linux-armv7l-cpython-313/vcf/sample_filter.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,122 copying build/lib.linux-armv7l-cpython-313/vcf/filters.py -> build/bdist.linux-armv7l/wheel/./vcf 2025-09-12T02:06:56,123 running install_egg_info 2025-09-12T02:06:56,201 Copying dcicpyvcf.egg-info to build/bdist.linux-armv7l/wheel/./dcicpyvcf-1.0.0.1b0-py3.13.egg-info 2025-09-12T02:06:56,203 running install_scripts 2025-09-12T02:06:56,204 creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts 2025-09-12T02:06:56,204 copying build/scripts-3.13/vcf_sample_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts 2025-09-12T02:06:56,204 copying build/scripts-3.13/vcf_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts 2025-09-12T02:06:56,205 copying build/scripts-3.13/vcf_melt -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts 2025-09-12T02:06:56,205 changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts/vcf_sample_filter.py to 755 2025-09-12T02:06:56,205 changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts/vcf_filter.py to 755 2025-09-12T02:06:56,205 changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.data/scripts/vcf_melt to 755 2025-09-12T02:06:56,255 creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.1b0.dist-info/WHEEL 2025-09-12T02:06:56,256 creating '/tmp/pip-wheel-azxv2z3l/dcicpyvcf-1.0.0.1b0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-12T02:06:56,258 adding 'dcicpyvcf-1.0.0.1b0.data/scripts/vcf_filter.py' 2025-09-12T02:06:56,258 adding 'dcicpyvcf-1.0.0.1b0.data/scripts/vcf_melt' 2025-09-12T02:06:56,259 adding 'dcicpyvcf-1.0.0.1b0.data/scripts/vcf_sample_filter.py' 2025-09-12T02:06:56,260 adding 'vcf/__init__.py' 2025-09-12T02:06:56,339 adding 'vcf/cparse.cpython-313-arm-linux-gnueabihf.so' 2025-09-12T02:06:56,342 adding 'vcf/cparse.pyx' 2025-09-12T02:06:56,343 adding 'vcf/filters.py' 2025-09-12T02:06:56,345 adding 'vcf/model.py' 2025-09-12T02:06:56,348 adding 'vcf/parser.py' 2025-09-12T02:06:56,349 adding 'vcf/sample_filter.py' 2025-09-12T02:06:56,350 adding 'vcf/utils.py' 2025-09-12T02:06:56,351 adding 'vcf/test/__init__.py' 2025-09-12T02:06:56,351 adding 'vcf/test/prof.py' 2025-09-12T02:06:56,356 adding 'vcf/test/test_vcf.py' 2025-09-12T02:06:56,357 adding 'dcicpyvcf-1.0.0.1b0.dist-info/METADATA' 2025-09-12T02:06:56,357 adding 'dcicpyvcf-1.0.0.1b0.dist-info/WHEEL' 2025-09-12T02:06:56,358 adding 'dcicpyvcf-1.0.0.1b0.dist-info/entry_points.txt' 2025-09-12T02:06:56,358 adding 'dcicpyvcf-1.0.0.1b0.dist-info/top_level.txt' 2025-09-12T02:06:56,359 adding 'dcicpyvcf-1.0.0.1b0.dist-info/RECORD' 2025-09-12T02:06:56,359 removing build/bdist.linux-armv7l/wheel 2025-09-12T02:06:56,622 Building wheel for dcicpyvcf (setup.py): finished with status 'done' 2025-09-12T02:06:56,626 Created wheel for dcicpyvcf: filename=dcicpyvcf-1.0.0.1b0-cp313-cp313-linux_armv7l.whl size=192746 sha256=d6c7ee7f734a039dcadadf82b0a4e8c5ce54ae49b38f4e7ae9e34a84e10aed36 2025-09-12T02:06:56,626 Stored in directory: /tmp/pip-ephem-wheel-cache-r6ba0k50/wheels/7c/80/b2/4328e4da99066507a0d62a37f0b7a9e2ebc856798307f56a8b 2025-09-12T02:06:56,635 Successfully built dcicpyvcf 2025-09-12T02:06:56,636 Removed build tracker: '/tmp/pip-build-tracker-rbbl8cg0'